Query psy14469
Match_columns 482
No_of_seqs 216 out of 241
Neff 5.0
Searched_HMMs 29240
Date Fri Aug 16 20:39:16 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14469.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14469hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4dzn_A Coiled-coil peptide CC- 78.3 3.9 0.00013 27.4 4.6 28 234-261 3-30 (33)
2 2js5_A Uncharacterized protein 52.8 14 0.00049 29.6 4.0 54 233-295 3-56 (71)
3 4etp_A Kinesin-like protein KA 52.7 39 0.0013 34.8 8.5 30 233-262 31-60 (403)
4 3csx_A Putative uncharacterize 49.6 11 0.00039 30.9 3.0 55 232-295 14-68 (81)
5 2k48_A Nucleoprotein; viral pr 48.7 60 0.002 27.8 7.4 41 170-210 30-71 (107)
6 4fi5_A Nucleoprotein; structur 45.4 65 0.0022 27.9 7.2 69 176-263 23-92 (113)
7 2ic9_A Nucleocapsid protein; h 38.8 1.2E+02 0.0042 25.5 7.8 70 175-263 5-75 (96)
8 1go4_E MAD1 (mitotic arrest de 35.0 49 0.0017 28.0 4.9 16 232-247 74-89 (100)
9 2aze_B Transcription factor E2 34.8 54 0.0019 27.8 5.2 37 233-269 6-42 (106)
10 3lay_A Zinc resistance-associa 33.7 2E+02 0.007 26.3 9.3 35 229-266 109-143 (175)
11 2l5g_A GPS2 protein, G protein 32.9 37 0.0013 24.0 3.0 25 232-256 14-38 (38)
12 2jee_A YIIU; FTSZ, septum, coi 32.8 87 0.003 25.6 5.8 30 232-261 19-48 (81)
13 2wt7_A Proto-oncogene protein 32.0 83 0.0029 23.9 5.4 33 233-265 23-55 (63)
14 3ra3_B P2F; coiled coil domain 31.1 19 0.00065 23.3 1.3 11 237-247 11-21 (28)
15 2yy0_A C-MYC-binding protein; 27.1 1E+02 0.0035 23.0 4.9 35 230-264 16-50 (53)
16 3u06_A Protein claret segregat 26.2 1.8E+02 0.0061 30.0 8.3 30 233-262 31-60 (412)
17 2v71_A Nuclear distribution pr 25.2 2.7E+02 0.0092 26.0 8.5 30 233-262 88-117 (189)
18 1fmh_A General control protein 25.1 1.4E+02 0.0048 19.9 4.6 28 234-261 2-29 (33)
19 3nmd_A CGMP dependent protein 24.7 1.9E+02 0.0066 23.1 6.3 24 235-258 42-65 (72)
20 3tnu_B Keratin, type II cytosk 24.4 1.1E+02 0.0037 26.3 5.4 32 234-265 44-75 (129)
21 1t2k_D Cyclic-AMP-dependent tr 24.4 1.4E+02 0.0048 22.4 5.4 32 233-264 22-53 (61)
22 2xdj_A Uncharacterized protein 24.2 1.2E+02 0.0042 24.6 5.3 27 235-261 29-55 (83)
23 3vkg_A Dynein heavy chain, cyt 23.7 2.5E+02 0.0085 36.7 10.3 9 281-289 2110-2118(3245)
24 2ic6_A Nucleocapsid protein; h 23.4 3E+02 0.01 22.3 8.1 36 175-210 5-41 (78)
25 3tnu_A Keratin, type I cytoske 23.3 1.2E+02 0.004 26.2 5.4 33 233-265 45-77 (131)
26 1t3j_A Mitofusin 1; coiled coi 23.2 73 0.0025 26.8 3.8 36 236-281 50-85 (96)
27 1kd8_A GABH AIV, GCN4 acid bas 21.8 2E+02 0.0069 20.0 5.1 32 234-265 2-33 (36)
28 3na7_A HP0958; flagellar bioge 20.1 5.5E+02 0.019 24.1 10.2 21 176-196 33-53 (256)
No 1
>4dzn_A Coiled-coil peptide CC-PIL; de novo protein; HET: PHI; 1.59A {Synthetic} PDB: 4dzm_A* 4dzl_A* 4dzk_A 1u0i_A 1u0i_B
Probab=78.27 E-value=3.9 Score=27.41 Aligned_cols=28 Identities=29% Similarity=0.274 Sum_probs=19.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 234 NVWQLKQEVAGLEELSRQLYLEAHDTCN 261 (482)
Q Consensus 234 ~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~ 261 (482)
||+.|+|||++|+.--..|-.|+..+++
T Consensus 3 eiaalkqeiaalkkeiaalkfeiaalkq 30 (33)
T 4dzn_A 3 EIAALKQEIAALKKEIAALKFEIAALKQ 30 (33)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHc
Confidence 6778888888887755555556666554
No 2
>2js5_A Uncharacterized protein; homodimer, protein structure, spectroscopy, structural genomics, PSI-2, protein structure initiative; NMR {Methylococcus capsulatus}
Probab=52.77 E-value=14 Score=29.57 Aligned_cols=54 Identities=17% Similarity=0.178 Sum_probs=40.9
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhHHhhhhhhhhhhhHHHHHHH
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWSKTWKGKYFNVLGYFFSLYCIWKILIC 295 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~SrT~kGr~~n~lGy~FSIYCVYKI~~s 295 (482)
+++.+|+.||..|.....|+-.||+||-.. +...+-+++..+=..|-+|+=...
T Consensus 3 edi~eLkkevkKL~~~A~q~kmdLHDLaEd---------LP~~w~~i~~vA~~tyda~~~l~~ 56 (71)
T 2js5_A 3 EGAEELKAKLKKLNAQATALKMDLHDLAED---------LPTGWNRIMEVAEKTYEAYRQLDE 56 (71)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHS---------TTTSGGGHHHHHHHHHHHHHHHHH
T ss_pred chHHHHHHHHHHHHHHHHHHHHhHHHHhcc---------chhhHHHHHHHHHHHHHHHHHHHH
Confidence 578899999999999999999999998652 333344666666667777766544
No 3
>4etp_A Kinesin-like protein KAR3; kinesin motor protein, kinesin motor homology domain, karyog mitosis, microtubules; HET: ADP EBC; 2.30A {Saccharomyces cerevisiae}
Probab=52.72 E-value=39 Score=34.83 Aligned_cols=30 Identities=17% Similarity=0.090 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNM 262 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~ 262 (482)
++.+.++++...-|.+++.|++++.||+..
T Consensus 31 ~~~~~~~~~~~~~~~~rr~l~n~~~elkgn 60 (403)
T 4etp_A 31 LGMKELNEILIKEETVRRTLHNELQELRGN 60 (403)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHcCCC
Confidence 355677777888888999999999998763
No 4
>3csx_A Putative uncharacterized protein; metalloprotein, nitrogen fixation, cyanobacteria, circadian rhythms, metal binding protein, unknown function; 1.84A {Cyanothece}
Probab=49.64 E-value=11 Score=30.86 Aligned_cols=55 Identities=25% Similarity=0.266 Sum_probs=37.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhHHhhhhhhhhhhhHHHHHHH
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWSKTWKGKYFNVLGYFFSLYCIWKILIC 295 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~SrT~kGr~~n~lGy~FSIYCVYKI~~s 295 (482)
.+++.+|+.||..|.....|+-.|||||-.. +.-.+-+++..+=..|-+|+=...
T Consensus 14 ~~di~eLkkevkKL~~~A~q~kmdLHDLaEd---------LP~~w~~i~~vA~~tyda~~~l~~ 68 (81)
T 3csx_A 14 PEAVADLKKKVRKLNSKAGQMKMDLHDLAEG---------LPTDYENLVETAEKTYEIFRELDQ 68 (81)
T ss_dssp ----CCHHHHHHHHHHHHHHHHHHHHHHHHH---------TTTTGGGHHHHHHHHHHHHHHHHH
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHcc---------chhhHHHHHHHHHHHHHHHHHHHH
Confidence 4678999999999999999999999998654 222333566666666666665543
No 5
>2k48_A Nucleoprotein; viral protein; NMR {Andes virus}
Probab=48.71 E-value=60 Score=27.81 Aligned_cols=41 Identities=15% Similarity=0.340 Sum_probs=30.1
Q ss_pred ccCChhhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCc
Q psy14469 170 RPVTSTDVYSIQKRLMQTLEMIVAKKKRIAVAKK-MNSNTSQ 210 (482)
Q Consensus 170 R~Vte~DI~~~er~L~~T~d~l~~KK~rl~~~q~-~~~~~~~ 210 (482)
.|.+-+|+..+|+.+.+.-.-|..-++++..+++ ++.+|++
T Consensus 30 ~~~tM~~ieeLQ~Ei~~~E~QL~iArQKLkdAe~~~E~DPDe 71 (107)
T 2k48_A 30 DPFTMSTLQELQENITAHEQQLVTARQKLKDAEKAVEVDPDD 71 (107)
T ss_dssp CSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 3666788888888888777777777778888876 5555554
No 6
>4fi5_A Nucleoprotein; structural genomics, niaid, national institute of allergy AN infectious diseases; 2.20A {Hantaan virus}
Probab=45.37 E-value=65 Score=27.88 Aligned_cols=69 Identities=9% Similarity=0.118 Sum_probs=37.9
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCccchhhhccccccccccccCccchhhHHHHHHHHHHHHHHHHHHH
Q psy14469 176 DVYSIQKRLMQTLEMIVAKKKRIAVAKK-MNSNTSQSQAYTQALWGMLKNVTTYSRSSENVWQLKQEVAGLEELSRQLYL 254 (482)
Q Consensus 176 DI~~~er~L~~T~d~l~~KK~rl~~~q~-~~~~~~~~~~~~~~l~~~l~s~~~~~~~~~~i~~Lq~EI~gLE~L~~~Lf~ 254 (482)
++..+|..+.+.-.-|..-++++..+++ ++.+|+.-+ ++. +..-+.|+++||+--.+|-.
T Consensus 23 ~ieeLq~Ei~~~E~QL~~ArQKLkdA~~~~e~DPDevN--K~t-----------------l~~R~~~Vs~lq~KiaeLKr 83 (113)
T 4fi5_A 23 TMEELQREINAHEGQLVIARQKVRDAEKQYEKDPDELN--KRT-----------------LTDREGVAVSIQAKIDELKR 83 (113)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHH-----------------HHHHHHHHHHHHHHHHHHHH
T ss_pred cHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH--HHH-----------------HHHHHHHHHHHHHHHHHHHH
Confidence 4555555555555555555566777765 455554422 111 22336677777776666666
Q ss_pred HHHHHHHHH
Q psy14469 255 EAHDTCNMM 263 (482)
Q Consensus 255 eL~eL~~~~ 263 (482)
.+.+.....
T Consensus 84 qLAd~va~~ 92 (113)
T 4fi5_A 84 QLADRIATG 92 (113)
T ss_dssp HHHHHHHC-
T ss_pred HHHHHHHhc
Confidence 666655533
No 7
>2ic9_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 2.00A {Sin nombre virus}
Probab=38.75 E-value=1.2e+02 Score=25.48 Aligned_cols=70 Identities=13% Similarity=0.192 Sum_probs=36.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCccchhhhccccccccccccCccchhhHHHHHHHHHHHHHHHHHH
Q psy14469 175 TDVYSIQKRLMQTLEMIVAKKKRIAVAKK-MNSNTSQSQAYTQALWGMLKNVTTYSRSSENVWQLKQEVAGLEELSRQLY 253 (482)
Q Consensus 175 ~DI~~~er~L~~T~d~l~~KK~rl~~~q~-~~~~~~~~~~~~~~l~~~l~s~~~~~~~~~~i~~Lq~EI~gLE~L~~~Lf 253 (482)
+|+..+|..+.+.-.-|..-++++..+++ ++.+|+.-+ ++. +..-+.|+++||.=-.+|-
T Consensus 5 ~~i~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDevN--k~~-----------------~~~R~~~V~~lq~Ki~elk 65 (96)
T 2ic9_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDDVN--KST-----------------LQSRRAAVSALETKLGELK 65 (96)
T ss_dssp CTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCHHH--HHH-----------------HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcHHH--HHH-----------------HHHHHHHHHHHHHHHHHHH
Confidence 35666666665555555555666777765 555554422 111 1222556666665555555
Q ss_pred HHHHHHHHHH
Q psy14469 254 LEAHDTCNMM 263 (482)
Q Consensus 254 ~eL~eL~~~~ 263 (482)
..+.+...+.
T Consensus 66 r~lAd~v~~~ 75 (96)
T 2ic9_A 66 RELADLIAAQ 75 (96)
T ss_dssp HHHHHHHHHH
T ss_pred HHHHHHHhcc
Confidence 5555555533
No 8
>1go4_E MAD1 (mitotic arrest deficient)-like 1; mitotic spindle checkpoint, cell cycle, mitosis, nuclear Pro; 2.05A {Homo sapiens} SCOP: h.1.22.1
Probab=35.01 E-value=49 Score=28.03 Aligned_cols=16 Identities=31% Similarity=0.304 Sum_probs=9.9
Q ss_pred chhhHHHHHHHHHHHH
Q psy14469 232 SENVWQLKQEVAGLEE 247 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~ 247 (482)
.+++..||+|++.|..
T Consensus 74 ~~~~e~Lq~E~erLr~ 89 (100)
T 1go4_E 74 REDHSQLQAECERLRG 89 (100)
T ss_dssp HHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHH
Confidence 3456666666666655
No 9
>2aze_B Transcription factor E2F1; coiled coil, beta sandwich, cell cycle, transcription; 2.55A {Homo sapiens} SCOP: e.63.1.2
Probab=34.84 E-value=54 Score=27.79 Aligned_cols=37 Identities=16% Similarity=0.086 Sum_probs=29.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWS 269 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~S 269 (482)
++...|++|++.|+..++.|=.-+..+++..+.....
T Consensus 6 ~~~~~Lk~El~~L~~~E~~LD~~i~~~~~~l~~lted 42 (106)
T 2aze_B 6 GRLEGLTQDLRQLQESEQQLDHLMNICTTQLRLLSED 42 (106)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence 4677899999999999998888888777766655544
No 10
>3lay_A Zinc resistance-associated protein; salmonella typhimurium L structural genomics, center for structural genomics of INFE diseases; 2.70A {Salmonella enterica subsp}
Probab=33.75 E-value=2e+02 Score=26.31 Aligned_cols=35 Identities=14% Similarity=0.145 Sum_probs=24.8
Q ss_pred CccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 229 SRSSENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKI 266 (482)
Q Consensus 229 ~~~~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~ 266 (482)
+.+.+.++++..||..|+. ++..+-.+++.+.++.
T Consensus 109 ~~DeakI~aL~~Ei~~Lr~---qL~~~R~k~~~em~Ke 143 (175)
T 3lay_A 109 SPDTAKINAVAKEMESLGQ---KLDEQRVKRDVAMAQA 143 (175)
T ss_dssp SCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHT
T ss_pred CCCHHHHHHHHHHHHHHHH---HHHHHHHHHHHHHHHh
Confidence 3556778888888877766 7777777777766544
No 11
>2l5g_A GPS2 protein, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}
Probab=32.94 E-value=37 Score=23.98 Aligned_cols=25 Identities=28% Similarity=0.547 Sum_probs=20.8
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHH
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEA 256 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL 256 (482)
.++|..|+.++++|.+=+-|||.+|
T Consensus 14 keQi~~l~~kl~~LkeEKHQLFlQL 38 (38)
T 2l5g_A 14 KEQILKLEEKLLALQEEKHQLFLQL 38 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHC
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHcC
Confidence 4688899999999998888888764
No 12
>2jee_A YIIU; FTSZ, septum, coiled-coil, cell division, cell cycle, hypothetical protein; 2.8A {Escherichia coli}
Probab=32.83 E-value=87 Score=25.58 Aligned_cols=30 Identities=20% Similarity=0.278 Sum_probs=23.9
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEAHDTCN 261 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~ 261 (482)
.+.|.-||+||+.|+.=..+|..+..++++
T Consensus 19 vdtI~lLqmEieELKekN~~L~~e~~e~~~ 48 (81)
T 2jee_A 19 IDTITLLQMEIEELKEKNNSLSQEVQNAQH 48 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 356788899999999988888888877544
No 13
>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D
Probab=32.03 E-value=83 Score=23.92 Aligned_cols=33 Identities=27% Similarity=0.172 Sum_probs=24.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEK 265 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r 265 (482)
+.+..|+.|++.|+.-...|-.++..|+.+.+.
T Consensus 23 ~~~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~ 55 (63)
T 2wt7_A 23 ELTDTLQAETDQLEDEKSALQTEIANLLKEKEK 55 (63)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 456777888888888777777777777766543
No 14
>3ra3_B P2F; coiled coil domain, fiber, KIH interactions, synthetic biolo helical reconstruction, de novo protein; HET: PHI; 2.31A {Synthetic}
Probab=31.14 E-value=19 Score=23.31 Aligned_cols=11 Identities=64% Similarity=0.785 Sum_probs=5.2
Q ss_pred HHHHHHHHHHH
Q psy14469 237 QLKQEVAGLEE 247 (482)
Q Consensus 237 ~Lq~EI~gLE~ 247 (482)
.|++||++||.
T Consensus 11 rlkqeiaaley 21 (28)
T 3ra3_B 11 RLKQEIAALEY 21 (28)
T ss_dssp HHHHHHHHHHH
T ss_pred HHHHHHHHHHH
Confidence 44445554443
No 15
>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}
Probab=27.08 E-value=1e+02 Score=23.00 Aligned_cols=35 Identities=14% Similarity=0.136 Sum_probs=28.6
Q ss_pred ccchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 230 RSSENVWQLKQEVAGLEELSRQLYLEAHDTCNMME 264 (482)
Q Consensus 230 ~~~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~ 264 (482)
+...+...|++|.+.|+.=-..|-.+..|++++.+
T Consensus 16 p~~~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l~ 50 (53)
T 2yy0_A 16 PENPEIELLRLELAEMKEKYEAIVEENKKLKAKLA 50 (53)
T ss_dssp CCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred CChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 44578889999999999988888888888887654
No 16
>3u06_A Protein claret segregational; motor domain, stalk rotation, power stroke, kinesin-14, MICR binding, NCD, transport, molecular motor; HET: ADP GOL; 2.35A {Drosophila melanogaster} PDB: 2ncd_A* 1n6m_A* 1cz7_A* 3l1c_A*
Probab=26.18 E-value=1.8e+02 Score=30.00 Aligned_cols=30 Identities=10% Similarity=-0.010 Sum_probs=24.0
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNM 262 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~ 262 (482)
++.+.+++++...|..++.|++++.|++..
T Consensus 31 ~~~~~~~~~l~~~~~~rr~l~n~~~~l~gn 60 (412)
T 3u06_A 31 AELETCKEQLFQSNMERKELHNTVMDLRDN 60 (412)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHTCS
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence 355667777778888999999999998863
No 17
>2v71_A Nuclear distribution protein NUDE-like 1; developmental protein, nuclear protein, neurogenesis, cytosk LIS1 binding, differentiation; 2.24A {Rattus norvegicus}
Probab=25.17 E-value=2.7e+02 Score=25.98 Aligned_cols=30 Identities=13% Similarity=0.140 Sum_probs=24.3
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNM 262 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~ 262 (482)
..++.||.|+..|.....+|-..+.+|...
T Consensus 88 ~~~~~Lq~el~~l~~~~~~l~~~ireLEq~ 117 (189)
T 2v71_A 88 KQVSVLEDDLSQTRAIKEQLHKYVRELEQA 117 (189)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 357888999999999888888877777663
No 18
>1fmh_A General control protein GCN4; coiled coil, leucine zipper, inter-helical ION pairing, transcription; NMR {Synthetic} SCOP: k.6.1.1 PDB: 1u2u_A
Probab=25.14 E-value=1.4e+02 Score=19.93 Aligned_cols=28 Identities=36% Similarity=0.243 Sum_probs=18.9
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 234 NVWQLKQEVAGLEELSRQLYLEAHDTCN 261 (482)
Q Consensus 234 ~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~ 261 (482)
+.++|+.|++.-|.-..||-.|+..|..
T Consensus 2 evaqlekevaqaeaenyqleqevaqleh 29 (33)
T 1fmh_A 2 EVAQLEKEVAQAEAENYQLEQEVAQLEH 29 (33)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHhHHHHHHHHHHH
Confidence 3567777777777777777666665543
No 19
>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}
Probab=24.74 E-value=1.9e+02 Score=23.07 Aligned_cols=24 Identities=25% Similarity=0.235 Sum_probs=11.2
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 235 VWQLKQEVAGLEELSRQLYLEAHD 258 (482)
Q Consensus 235 i~~Lq~EI~gLE~L~~~Lf~eL~e 258 (482)
|..|+.|++..|+.-++|-.++++
T Consensus 42 I~eLEk~L~ekd~eI~~LqseLDK 65 (72)
T 3nmd_A 42 IDELELELDQKDELIQMLQNELDK 65 (72)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444455555555544444444443
No 20
>3tnu_B Keratin, type II cytoskeletal 5; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=24.43 E-value=1.1e+02 Score=26.31 Aligned_cols=32 Identities=16% Similarity=0.135 Sum_probs=24.2
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 234 NVWQLKQEVAGLEELSRQLYLEAHDTCNMMEK 265 (482)
Q Consensus 234 ~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r 265 (482)
.+..|+.|+++++.+...|=..+.|+..+.+.
T Consensus 44 ~iq~L~~el~~l~~~~~~LE~~l~e~e~~~~~ 75 (129)
T 3tnu_B 44 MIQRLRAEIDNVKKQCANLQNAIADAEQRGEL 75 (129)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHH
Confidence 56778888888888888888777777765543
No 21
>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1
Probab=24.37 E-value=1.4e+02 Score=22.37 Aligned_cols=32 Identities=25% Similarity=0.148 Sum_probs=21.2
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNMME 264 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~ 264 (482)
+.+..|+.+++.|+.-..+|-.++..|+.+..
T Consensus 22 ~~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~ 53 (61)
T 1t2k_D 22 VWVQSLEKKAEDLSSLNGQLQSEVTLLRNEVA 53 (61)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34566677777777777777777776666544
No 22
>2xdj_A Uncharacterized protein YBGF; unknown function; 1.82A {Escherichia coli} PDB: 2wz7_A
Probab=24.16 E-value=1.2e+02 Score=24.61 Aligned_cols=27 Identities=4% Similarity=0.079 Sum_probs=12.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 235 VWQLKQEVAGLEELSRQLYLEAHDTCN 261 (482)
Q Consensus 235 i~~Lq~EI~gLE~L~~~Lf~eL~eL~~ 261 (482)
+..|+.||+.|.-.-.++-.++.++++
T Consensus 29 l~~Lq~Ev~~LRGqiE~~~~~l~ql~~ 55 (83)
T 2xdj_A 29 LSDNQSDIDSLRGQIQENQYQLNQVVE 55 (83)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhHHHHHHHHHHHHHH
Confidence 444455554444444444444444443
No 23
>3vkg_A Dynein heavy chain, cytoplasmic; AAA+ protein, molecular motor, microtubles, motor protein; HET: ADP SPM; 2.81A {Dictyostelium discoideum} PDB: 3vkh_A*
Probab=23.75 E-value=2.5e+02 Score=36.72 Aligned_cols=9 Identities=22% Similarity=0.084 Sum_probs=5.4
Q ss_pred hhhhhhhhH
Q psy14469 281 GYFFSLYCI 289 (482)
Q Consensus 281 Gy~FSIYCV 289 (482)
.-+|..||-
T Consensus 2110 aaafisY~G 2118 (3245)
T 3vkg_A 2110 ASAFLAYIG 2118 (3245)
T ss_dssp HHHHHHTGG
T ss_pred HHHHHHHcC
Confidence 445667774
No 24
>2ic6_A Nucleocapsid protein; hantavirus, bunyaviridae, ssRNA negative- strand viruses, antiparallel coiled coil, viral protein; 1.15A {Sin nombre virus}
Probab=23.43 E-value=3e+02 Score=22.31 Aligned_cols=36 Identities=8% Similarity=0.272 Sum_probs=22.3
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHH-hccCCCc
Q psy14469 175 TDVYSIQKRLMQTLEMIVAKKKRIAVAKK-MNSNTSQ 210 (482)
Q Consensus 175 ~DI~~~er~L~~T~d~l~~KK~rl~~~q~-~~~~~~~ 210 (482)
+|+..+|..+.+.-.-|..-++++..+++ ++.+|+.
T Consensus 5 ~~l~eLq~e~~~~E~QL~~A~QKLkdA~~~~e~DPDe 41 (78)
T 2ic6_A 5 STLKEVQDNITLHEQRLVTTRQKLKDAERAVELDPDD 41 (78)
T ss_dssp CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCcH
Confidence 45666666666655555556666777765 5555554
No 25
>3tnu_A Keratin, type I cytoskeletal 14; coiled-coil, structural support, cytosolic protein; 3.00A {Homo sapiens}
Probab=23.33 E-value=1.2e+02 Score=26.21 Aligned_cols=33 Identities=12% Similarity=0.022 Sum_probs=25.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEK 265 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r 265 (482)
..+..|+.|+++++.++..|-..+.|+..+.+.
T Consensus 45 r~iq~L~~el~~l~~~~~sLE~~l~e~e~~~~~ 77 (131)
T 3tnu_A 45 RTMQNLEIELQSQLSMKASLENSLEETKGRYCM 77 (131)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 457788889999888888888888877775544
No 26
>1t3j_A Mitofusin 1; coiled coil antiparallel, dimer, membrane protein; 2.50A {Mus musculus} SCOP: h.4.16.1
Probab=23.25 E-value=73 Score=26.82 Aligned_cols=36 Identities=19% Similarity=0.198 Sum_probs=0.0
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhHHhhhh
Q psy14469 236 WQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWSKTWKGKYFNVLG 281 (482)
Q Consensus 236 ~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~SrT~kGr~~n~lG 281 (482)
+.|+.||+.|+. ++.....-+..++++++|...+-+
T Consensus 50 ~eL~~EI~~L~~----------eI~~LE~iqs~aK~LRnKA~~L~~ 85 (96)
T 1t3j_A 50 KHLEEEIARLSK----------EIDQLEKMQNNSKLLRNKAVQLES 85 (96)
T ss_dssp HHHHHHHHHHHH----------HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHH----------HHHHHHHHHHHhHHHHHHHHHHHH
No 27
>1kd8_A GABH AIV, GCN4 acid base heterodimer acid-D12IA16V; coiled coil heterodimer, de novo protein; 1.90A {Synthetic} SCOP: h.1.3.1 PDB: 1kdd_A 1kd9_A
Probab=21.78 E-value=2e+02 Score=20.05 Aligned_cols=32 Identities=25% Similarity=0.122 Sum_probs=22.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 234 NVWQLKQEVAGLEELSRQLYLEAHDTCNMMEK 265 (482)
Q Consensus 234 ~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r 265 (482)
++++|+.+++.|..=...|-+|+..|+.....
T Consensus 2 RMnQLE~kVEeLl~~~~~Le~EV~RL~~ll~~ 33 (36)
T 1kd8_A 2 EVKQLEAEVEEIESEVWHLENEVARLEKENAE 33 (36)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred chhHHHHHHHHHHHhhHHHHHHHHHHHHHhcc
Confidence 35677777777777777777777777765543
No 28
>3na7_A HP0958; flagellar biogenesis, flagellum export, C4 Zn-ribbon, coiled post-transcriptional, gene regulation, chaperone; HET: EPE; 2.20A {Helicobacter pylori}
Probab=20.07 E-value=5.5e+02 Score=24.14 Aligned_cols=21 Identities=10% Similarity=0.018 Sum_probs=8.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHH
Q psy14469 176 DVYSIQKRLMQTLEMIVAKKK 196 (482)
Q Consensus 176 DI~~~er~L~~T~d~l~~KK~ 196 (482)
++..++..+....+.+.+.+.
T Consensus 33 el~~le~~~~~l~~~~~~~~~ 53 (256)
T 3na7_A 33 DLDKALNDKEAKNKAILNLEE 53 (256)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344444444333333333333
Done!