Query psy14469
Match_columns 482
No_of_seqs 216 out of 241
Neff 5.0
Searched_HMMs 13730
Date Fri Aug 16 20:39:25 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14469.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14469hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1io1a_ e.32.1.1 (A:) Phase 1 49.2 8.7 0.00064 34.1 5.1 33 231-277 49-81 (395)
2 d2azeb1 e.63.1.2 (B:201-301) T 26.8 45 0.0033 26.1 5.3 31 235-265 3-33 (101)
3 d1gqea_ e.38.1.1 (A:) Polypept 19.6 1.8E+02 0.013 27.0 9.2 29 175-203 6-36 (362)
4 d1nkpa_ a.38.1.1 (A:) Myc prot 14.8 1.3E+02 0.0092 22.1 5.4 33 232-264 51-83 (88)
5 d2pila_ d.24.1.1 (A:) Pilin Gc 13.7 39 0.0028 25.9 2.1 14 146-159 10-23 (158)
6 d1nlwa_ a.38.1.1 (A:) Mad prot 13.7 1.1E+02 0.0079 22.0 4.6 33 232-264 46-78 (79)
7 d1ydxa2 d.287.1.2 (A:194-374) 13.0 73 0.0053 25.1 3.7 21 234-254 154-174 (181)
8 d1seta1 a.2.7.1 (A:1-110) Sery 12.8 2.6E+02 0.019 20.8 7.4 26 233-258 71-96 (110)
9 d2azeb1 e.63.1.2 (B:201-301) T 12.5 1.2E+02 0.009 23.4 4.8 37 232-268 7-43 (101)
10 d2hgsa4 d.142.1.6 (A:3-201,A:3 12.0 7.6 0.00055 37.6 -3.5 30 134-163 315-369 (370)
No 1
>d1io1a_ e.32.1.1 (A:) Phase 1 flagellin {Salmonella typhimurium [TaxId: 90371]}
Probab=49.25 E-value=8.7 Score=34.10 Aligned_cols=33 Identities=9% Similarity=0.211 Sum_probs=25.8
Q ss_pred cchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCchhhhHH
Q psy14469 231 SSENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQWSKTWKGKYF 277 (482)
Q Consensus 231 ~~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~SrT~kGr~~ 277 (482)
..++.+.+|.|++.|.+ +..|.....++-|+.+
T Consensus 49 ~~~dr~ai~~E~~~l~~--------------ei~~ia~~T~fng~~L 81 (395)
T d1io1a_ 49 SQSDLDSIQAEITQRLN--------------EIDRVSGQTQFNGVKV 81 (395)
T ss_dssp CHHHHHHHHHHHHHHHH--------------HHHHHHHHCCBTTBCT
T ss_pred CHHHHHHHHHHHHHHHH--------------HHHHHHHhCeeCCccc
Confidence 34677888999988888 7788887788887764
No 2
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=26.83 E-value=45 Score=26.11 Aligned_cols=31 Identities=19% Similarity=0.116 Sum_probs=18.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 235 VWQLKQEVAGLEELSRQLYLEAHDTCNMMEK 265 (482)
Q Consensus 235 i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r 265 (482)
+..|++|++.|+..++.|=.-+..+++..+.
T Consensus 3 ~~~L~~El~~L~~~E~~LD~li~~~~~~L~~ 33 (101)
T d2azeb1 3 LEGLTQDLRQLQESEQQLDHLMNICTTQLRL 33 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4566777777777666665555555444433
No 3
>d1gqea_ e.38.1.1 (A:) Polypeptide chain release factor 2 (RF2) {Escherichia coli [TaxId: 562]}
Probab=19.56 E-value=1.8e+02 Score=27.01 Aligned_cols=29 Identities=17% Similarity=0.110 Sum_probs=19.9
Q ss_pred hhHHHHHHHHHHHHH--HHHHHHHHHHHHHH
Q psy14469 175 TDVYSIQKRLMQTLE--MIVAKKKRIAVAKK 203 (482)
Q Consensus 175 ~DI~~~er~L~~T~d--~l~~KK~rl~~~q~ 203 (482)
.+|+.+.+++..... .+.+||+|+.+++.
T Consensus 6 ~~i~eL~~rl~~Lr~~fDld~kk~Rl~ELE~ 36 (362)
T d1gqea_ 6 NRIQDLTERSDVLRGYLDYDAKKERLEEVNA 36 (362)
T ss_dssp HHHHHHHHHHHHHHHHTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHcCHHHHHHHHHHHHH
Confidence 456666666655444 46778889998876
No 4
>d1nkpa_ a.38.1.1 (A:) Myc proto-oncogene protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=14.77 E-value=1.3e+02 Score=22.06 Aligned_cols=33 Identities=12% Similarity=0.068 Sum_probs=25.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEAHDTCNMME 264 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~ 264 (482)
.+.|..|+.|++.|+.-..++-.+...|+++.+
T Consensus 51 ~~yI~~L~~~~~~l~~~~~~l~~~~~~L~~~l~ 83 (88)
T d1nkpa_ 51 TAYILSVQAEEQKLISEEDLLRKRREQLKHKLE 83 (88)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 467889999998888877777777777666654
No 5
>d2pila_ d.24.1.1 (A:) Pilin Gc {Neisseria gonorrhoeae [TaxId: 485]}
Probab=13.70 E-value=39 Score=25.92 Aligned_cols=14 Identities=7% Similarity=0.349 Sum_probs=11.3
Q ss_pred HHHHHHhhcccccc
Q psy14469 146 VTVMALLSGFGAVN 159 (482)
Q Consensus 146 VTlMAiLSGfGAVs 159 (482)
|.++|+|+++|.-+
T Consensus 10 iaIIgILaaia~P~ 23 (158)
T d2pila_ 10 IAIVGILAAVALPA 23 (158)
T ss_dssp HHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHH
Confidence 56788999998766
No 6
>d1nlwa_ a.38.1.1 (A:) Mad protein {Human (Homo sapiens) [TaxId: 9606]}
Probab=13.70 E-value=1.1e+02 Score=21.98 Aligned_cols=33 Identities=15% Similarity=0.040 Sum_probs=26.4
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEAHDTCNMME 264 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~ 264 (482)
.+.|..|+.++..++.-..+|..+..+|+.+.+
T Consensus 46 ~~yI~~L~~~~~~l~~~~~~L~~~~~~L~~~l~ 78 (79)
T d1nlwa_ 46 KLHIKKLEDSDRKAVHQIDQLQREQRHLKRQLE 78 (79)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 468889999999888888888888888777654
No 7
>d1ydxa2 d.287.1.2 (A:194-374) Bipartite methylase S protein MG438 {Mycoplasma genitalium [TaxId: 2097]}
Probab=13.03 E-value=73 Score=25.15 Aligned_cols=21 Identities=24% Similarity=0.286 Sum_probs=10.1
Q ss_pred hhHHHHHHHHHHHHHHHHHHH
Q psy14469 234 NVWQLKQEVAGLEELSRQLYL 254 (482)
Q Consensus 234 ~i~~Lq~EI~gLE~L~~~Lf~ 254 (482)
.+..++++++.|+++++.|..
T Consensus 154 ~i~~~~~~i~~l~~lk~~Ll~ 174 (181)
T d1ydxa2 154 KLDQYKKELSSLTVIRDTLLK 174 (181)
T ss_dssp HHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHH
Confidence 344445555555555444433
No 8
>d1seta1 a.2.7.1 (A:1-110) Seryl-tRNA synthetase (SerRS) {Thermus thermophilus, strain hb27 [TaxId: 274]}
Probab=12.75 E-value=2.6e+02 Score=20.85 Aligned_cols=26 Identities=23% Similarity=0.102 Sum_probs=12.6
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14469 233 ENVWQLKQEVAGLEELSRQLYLEAHD 258 (482)
Q Consensus 233 ~~i~~Lq~EI~gLE~L~~~Lf~eL~e 258 (482)
++.+.+..||..||.-.+++-.++++
T Consensus 71 ~~~k~lk~~i~~le~~~~~~~~~l~~ 96 (110)
T d1seta1 71 ARGKALGEEAKRLEEALREKEARLEA 96 (110)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 34455555555555544444444333
No 9
>d2azeb1 e.63.1.2 (B:201-301) Transcription factor E2F1 {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.53 E-value=1.2e+02 Score=23.36 Aligned_cols=37 Identities=11% Similarity=0.101 Sum_probs=31.0
Q ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy14469 232 SENVWQLKQEVAGLEELSRQLYLEAHDTCNMMEKIQW 268 (482)
Q Consensus 232 ~~~i~~Lq~EI~gLE~L~~~Lf~eL~eL~~~~~r~~~ 268 (482)
.+|+..|++|-+.|..+.+.+-.++.++....+..++
T Consensus 7 ~~El~~L~~~E~~LD~li~~~~~~L~~lted~~n~k~ 43 (101)
T d2azeb1 7 TQDLRQLQESEQQLDHLMNICTTQLRLLSEDTDSQRL 43 (101)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHHhhhchhhccC
Confidence 4688999999999999999999999998876655554
No 10
>d2hgsa4 d.142.1.6 (A:3-201,A:304-474) Eukaryotic glutathione synthetase ATP-binding domain {Human (Homo sapiens) [TaxId: 9606]}
Probab=12.03 E-value=7.6 Score=37.60 Aligned_cols=30 Identities=33% Similarity=0.640 Sum_probs=26.0
Q ss_pred hhhhhheeehhhHHH-------------------------HHHhhcccccccccc
Q psy14469 134 IEQGISRIGVIGVTV-------------------------MALLSGFGAVNYPYT 163 (482)
Q Consensus 134 ~e~~lsRIgViGVTl-------------------------MAiLSGfGAVstPY~ 163 (482)
.+++++.+||-|+.+ .++-+||||+.+||=
T Consensus 315 ~~~~iSElGifG~~l~~~~~~~~N~~~G~LlRTK~~~~~EGGVaaG~g~lDSpyl 369 (370)
T d2hgsa4 315 VVQCISELGIFGVYVRQEKTLVMNKHVGHLLRTKAIEHADGGVAAGVAVLDNPYP 369 (370)
T ss_dssp EEEEEEEEEEEEEEEEETTEEEEEEEEEEEEEEEETTCSSCCTTTTSCEEECCEE
T ss_pred eccccccccccEEEEeCCCEEEEeccceEEEecCCCCCCCCCeecceecccCccc
Confidence 689999999999875 578899999999983
Done!