RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14469
(482 letters)
>gnl|CDD|221626 pfam12537, DUF3735, Protein of unknown function (DUF3735). This
domain family is found in eukaryotes, and is
approximately 70 amino acids in length. There is a
conserved LSG sequence motif. There is a single
completely conserved residue G that may be functionally
important.
Length = 71
Score = 98.4 bits (246), Expect = 3e-25
Identities = 34/70 (48%), Positives = 50/70 (71%)
Query: 130 GFLSIEQGISRIGVIGVTVMALLSGFGAVNYPYTSMFYFIRPVTSTDVYSIQKRLMQTLE 189
GF +E +SR+ VIGVT+MA+LSGFGAV+ PY F RPV+ +D+ +++KRL TL+
Sbjct: 2 GFFYLENLLSRVSVIGVTIMAILSGFGAVSTPYYYFSLFRRPVSESDINNLEKRLWHTLD 61
Query: 190 MIVAKKKRIA 199
++ KKK +
Sbjct: 62 LLAEKKKELE 71
Score = 68.0 bits (167), Expect = 1e-14
Identities = 23/42 (54%), Positives = 29/42 (69%)
Query: 41 GFLSIEQGISRIGVIGVTVMALLSGFGAVNYPYTSMFYFIRK 82
GF +E +SR+ VIGVT+MA+LSGFGAV+ PY F R
Sbjct: 2 GFFYLENLLSRVSVIGVTIMAILSGFGAVSTPYYYFSLFRRP 43
>gnl|CDD|153335 cd07651, F-BAR_PombeCdc15_like, The F-BAR (FES-CIP4 Homology and
Bin/Amphiphysin/Rvs) domain of Schizosaccharomyces pombe
Cdc15, and similar proteins. F-BAR domains are
dimerization modules that bind and bend membranes and
are found in proteins involved in membrane dynamics and
actin reorganization. This subfamily is composed of
Schizosaccharomyces pombe Cdc15 and Imp2, and similar
proteins. These proteins contain an N-terminal F-BAR
domain and a C-terminal SH3 domain. S. pombe Cdc15 and
Imp2 play both distinct and overlapping roles in the
maintenance and strengthening of the contractile ring at
the division site, which is required in cell division.
Cdc15 is a component of the actomyosin ring and is
required in normal cytokinesis. Imp2 colocalizes with
the medial ring during septation and is required for
normal septation. F-BAR domains form banana-shaped
dimers with a positively-charged concave surface that
binds to negatively-charged lipid membranes. They can
induce membrane deformation in the form of long tubules.
Length = 236
Score = 29.2 bits (66), Expect = 4.2
Identities = 22/96 (22%), Positives = 43/96 (44%), Gaps = 18/96 (18%)
Query: 180 IQKRLMQTLEMIVAKKKRIAVAKKMNSNTSQSQAYTQALWG--MLKNVTTYSRSSENVWQ 237
++K+ Q + A++K A K+NS T QS Q WG + KN +++ ++
Sbjct: 113 LKKKQDQEKYLEKAREKYEADCSKINSYTLQS----QLTWGKELEKNNAKLNKAQSSINS 168
Query: 238 LKQEVAGLEELSRQLYLEAHDTCNMMEKIQWSKTWK 273
+++ Q ++A N + W++ WK
Sbjct: 169 SRRDY--------QNAVKALRELNEI----WNREWK 192
>gnl|CDD|143462 cd07144, ALDH_ALD2-YMR170C, Saccharomyces cerevisiae aldehyde
dehydrogenase 2 (YMR170c)-like. NAD(P)+-dependent
Saccharomyces cerevisiae aldehyde dehydrogenase 2
(YMR170c, ALD5, EC=1.2.1.5) and other similar sequences,
are present in this CD.
Length = 484
Score = 29.3 bits (66), Expect = 4.6
Identities = 20/74 (27%), Positives = 25/74 (33%), Gaps = 22/74 (29%)
Query: 116 WKLGDPF-------PILSAKQ-----GFLSIEQGISRIGVIGVTVMALLSGFGAVNYPYT 163
+K+G PF P +S Q + IE+G A L G
Sbjct: 315 YKVGSPFDDDTVVGPQVSKTQYDRVLSY--IEKGKKEG--------AKLVYGGEKAPEGL 364
Query: 164 SMFYFIRPVTSTDV 177
YFI P TDV
Sbjct: 365 GKGYFIPPTIFTDV 378
>gnl|CDD|182747 PRK10807, PRK10807, paraquat-inducible protein B; Provisional.
Length = 547
Score = 29.2 bits (66), Expect = 5.5
Identities = 25/96 (26%), Positives = 45/96 (46%), Gaps = 9/96 (9%)
Query: 161 PYTSMFYFIRPVTSTDVYSIQKRLMQTLEMIVAKKKRIAVAKKMNSNTS---QSQAYTQA 217
P Y I P S + IQ++LM+ L+ I + + + TS +SQ +
Sbjct: 399 PREFNGYPIIPTVSGGLAQIQQKLMEALDKI----NNLPLNPMIEQATSTLSESQRTMRE 454
Query: 218 LWGMLKNVTTYSRSSENVWQLKQEV-AGLEELSRQL 252
L L ++ + SS+++ QL ++ L EL+R +
Sbjct: 455 LQTTLDSLNKIT-SSQSMQQLPADMQKTLRELNRSM 489
>gnl|CDD|238265 cd00475, CIS_IPPS, Cis (Z)-Isoprenyl Diphosphate Synthases
(cis-IPPS); homodimers which catalyze the successive
1'-4 condensation of the isopentenyl diphosphate (IPP)
molecule to trans,trans-farnesyl diphosphate (FPP) or to
cis,trans-FPP to form long-chain polyprenyl
diphosphates. A few can also catalyze the condensation
of IPP to trans-geranyl diphosphate to form the
short-chain cis,trans- FPP. In prokaryotes, the
cis-IPPS, undecaprenyl diphosphate synthase (UPP
synthase) catalyzes the formation of the carrier lipid
UPP in bacterial cell wall peptidooglycan biosynthesis.
Similarly, in eukaryotes, the cis-IPPS, dehydrodolichyl
diphosphate (dedol-PP) synthase catalyzes the formation
of the polyisoprenoid glycosyl carrier lipid dolichyl
monophosphate. cis-IPPS are mechanistically and
structurally distinct from trans-IPPS, lacking the DDXXD
motifs, yet requiring Mg2+ for activity.
Length = 221
Score = 28.4 bits (64), Expect = 7.7
Identities = 18/61 (29%), Positives = 29/61 (47%), Gaps = 3/61 (4%)
Query: 193 AKKKRIAVAK--KMNSNTSQSQAYTQALWGMLKNVTTYSRSSENVWQLKQEVAGLEELSR 250
AK++ + + K + + G +K VT Y+ S+EN + K+EV L EL R
Sbjct: 15 AKQRGMDRIEGHKAGAEKLRDILRWCLELG-VKEVTLYAFSTENWKRPKEEVDFLMELFR 73
Query: 251 Q 251
Sbjct: 74 D 74
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.328 0.142 0.440
Gapped
Lambda K H
0.267 0.0759 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 25,011,886
Number of extensions: 2510074
Number of successful extensions: 3064
Number of sequences better than 10.0: 1
Number of HSP's gapped: 3051
Number of HSP's successfully gapped: 30
Length of query: 482
Length of database: 10,937,602
Length adjustment: 101
Effective length of query: 381
Effective length of database: 6,457,848
Effective search space: 2460440088
Effective search space used: 2460440088
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 61 (27.2 bits)