RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14469
(482 letters)
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 53.9 bits (129), Expect = 1e-07
Identities = 72/433 (16%), Positives = 132/433 (30%), Gaps = 157/433 (36%)
Query: 125 LSAK-QGFLSIEQGISRIGVIGVTVMALLSGFGAVNYPYTSMFYFIRPVTSTDVYSIQKR 183
L K G++S S++G + L+ F + + + D++++ +
Sbjct: 60 LVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEF-------ENCY-----LEGNDIHALAAK 107
Query: 184 LMQTLEMIVAKKKRIAVAKKMNSNTSQSQAYTQALWGMLKNVTTYSRSSENVWQLKQEVA 243
L+Q + + K K + + Y A + S S+ L + V
Sbjct: 108 LLQENDTTLVKTKELI------------KNYITARIMAKRPFDKKSNSA-----LFRAVG 150
Query: 244 -----------G-------LEELSRQLYLEAHDTCNMMEKIQWSKTWKGKYFNVLGYFFS 285
G EEL R LY T Y ++G
Sbjct: 151 EGNAQLVAIFGGQGNTDDYFEEL-RDLY----QT----------------YHVLVGDLIK 189
Query: 286 LYCIWKILICTINIVFDRVGKKDPVTRGIEILVHWVEL-----DIDVVFWSQHISFLLVG 340
+ L ++ + + T+G+ IL W+E D D S IS L+G
Sbjct: 190 F--SAETL---SELIRTTLDAEKVFTQGLNIL-EWLENPSNTPDKD-YLLSIPISCPLIG 242
Query: 341 ----------CIVL--------TSIRGLLLTLTKVRT-------------LDPIELDIDV 369
+L + ++G + T + I V
Sbjct: 243 VIQLAHYVVTAKLLGFTPGELRSYLKGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV 302
Query: 370 VFW----SQH------ISFLLV------GCIVLT---SIRGLLLTLTKVRTLDPIELDID 410
+F+ + ++ V + SI L T + ++ ++
Sbjct: 303 LFFIGVRCYEAYPNTSLPPSILEDSLENNEGVPSPMLSISNL--------TQEQVQDYVN 354
Query: 411 VV----FWSQHISFLLV-G--CIVLT----SIRGLLLTLTKVRTLDPIELDIDVVFWSQ- 458
+ + LV G +V++ S+ GL LTL K + P LD + +S+
Sbjct: 355 KTNSHLPAGKQVEISLVNGAKNLVVSGPPQSLYGLNLTLRKAKA--PSGLDQSRIPFSER 412
Query: 459 ----HISFLLVGC 467
FL V
Sbjct: 413 KLKFSNRFLPVAS 425
Score = 37.0 bits (85), Expect = 0.017
Identities = 47/282 (16%), Positives = 86/282 (30%), Gaps = 86/282 (30%)
Query: 27 WKLGDPFPILSAKQGFLSIEQGISRIGVIGVTVMALLSGFG-----AVNYPYTSMFY--- 78
W D GF SI I + +T+ FG + Y++M +
Sbjct: 1646 WNRADNH--FKDTYGF-SI-LDIVINNPVNLTIH-----FGGEKGKRIRENYSAMIFETI 1696
Query: 79 ----FIRKGHLDNMGPRSSRV----PNNMIRPMAVT---IWLTYIYLFWKLGDPFPI--- 124
+ + S+ ++ T + L F L I
Sbjct: 1697 VDGKLKTEKIFKEINEHSTSYTFRSEKGLLSATQFTQPALTLMEKAAFEDLKSKGLIPAD 1756
Query: 125 -------------LSAKQGFLSIEQGIS----RIGVIGVTVMALLSG--FGAVNYPYTSM 165
L++ +SIE + R G+T+ + G NY M
Sbjct: 1757 ATFAGHSLGEYAALASLADVMSIESLVEVVFYR----GMTMQVAVPRDELGRSNY---GM 1809
Query: 166 FYFIRPVTSTDVYSIQKRL-MQTLEMIVAKKKR-------IAVAKKMNSNTSQSQAY--- 214
I P + + L+ +V + + I N N Q Y
Sbjct: 1810 IA-INPG------RVAASFSQEALQYVVERVGKRTGWLVEIV-----NYNVENQQ-YVAA 1856
Query: 215 --TQALWGMLKNVTTYSRS-SENVWQLKQEVAGLEELSRQLY 253
+AL + NV + + ++ +L++ ++ LEE+ L+
Sbjct: 1857 GDLRALD-TVTNVLNFIKLQKIDIIELQKSLS-LEEVEGHLF 1896
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 36.8 bits (84), Expect = 0.018
Identities = 47/393 (11%), Positives = 109/393 (27%), Gaps = 131/393 (33%)
Query: 168 FIRPVTST----DVYSIQKRLMQT---LEMIVAKKKRI------------------AVAK 202
+ + S + + + T +++K++ + +
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 203 KMNSNTSQSQAYTQA---LWGMLKNVTTYSRSS-ENVWQLKQEVAGLEELSRQLYLEAH- 257
+ + ++ Y + L+ + Y+ S + +L+Q L EL +
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQ---ALLELRPAKNVLIDG 157
Query: 258 -----------DTCNMMEKIQWSKTWKGKYFNV----LGYFFSLYCIWKIL--ICTINIV 300
D C K+Q F + L S + ++L + I
Sbjct: 158 VLGSGKTWVALDVCLS-YKVQ-----CKMDFKIFWLNLKNCNSPETVLEMLQKLLY-QID 210
Query: 301 FDRVGKKDPVTRGIEILVHWVE------------------LDIDVVFWS-QHISFLLVGC 341
+ + D + I++ +H ++ L +V + + + + C
Sbjct: 211 PNWTSRSDHSSN-IKLRIHSIQAELRRLLKSKPYENCLLVLL-NV--QNAKAWNAFNLSC 266
Query: 342 --IVLTSIRGLLLTLTKVRTLDPIELDIDVVFWSQHISFLLVGCIVLTSIRGLLLTLTKV 399
++ T + + L+ T + ++ LLL
Sbjct: 267 KILLTTRFKQVTDFLSAATTTHISLDHHSMTL-------------TPDEVKSLLLKYLDC 313
Query: 400 RTLD-PIE------LDIDVV--FWSQHIS----FLLVGCIVLTSIRGLLLTLTKVRTLDP 446
R D P E + ++ ++ + V C LT+I + L+P
Sbjct: 314 RPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIES-----SLNVLEP 368
Query: 447 IEL------------DIDV------VFWSQHIS 461
E + + W I
Sbjct: 369 AEYRKMFDRLSVFPPSAHIPTILLSLIWFDVIK 401
Score = 36.0 bits (82), Expect = 0.029
Identities = 56/343 (16%), Positives = 102/343 (29%), Gaps = 108/343 (31%)
Query: 156 GAVNYPYTSMFYFIRP--VTSTDVYSIQKRLMQTLEMIVAKKKRIAVAKKMNSNTSQSQA 213
G Y Y + V + D +Q I++K++ + + S + S
Sbjct: 12 GEHQYQYKDILSVFEDAFVDNFDCKDVQDMPKS----ILSKEE---IDHIIMSKDAVSGT 64
Query: 214 YTQALWGML-KNVTTYSRSSENV------W---QLKQEVAGLEELSRQLYLEAHDTCNMM 263
+ W +L K + E V + +K E + ++Y+E D
Sbjct: 65 L-RLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQ-PSMMTRMYIEQRD----- 117
Query: 264 EKIQWSKTWKGKYFNVLGYFFSLYCIWKILICTINIVFDRVGKKDPVTRGIEILV---HW 320
+ +N N VF K V+R L
Sbjct: 118 -----------RLYND------------------NQVF----AKYNVSRLQPYLKLRQAL 144
Query: 321 VELDIDVVFWSQHISFLLV----GCIVLTSIRG-LLLTLTKVRTLDPIELDIDVVFWSQH 375
+EL + +L+ G G + L + +FW
Sbjct: 145 LEL--------RPAKNVLIDGVLGS-------GKTWVALDVCLSYKVQCKMDFKIFW--- 186
Query: 376 ISFLLVGCIVLTSIRGLLLTLTKV-RTLDP---IELDIDVVFWSQHISFLLVGCIVLTSI 431
L + S +L L K+ +DP D S +I + + +
Sbjct: 187 ---LNLKNC--NSPETVLEMLQKLLYQIDPNWTSRSDH-----SSNIKLRIH--SIQAEL 234
Query: 432 RGLLLTLTKVRTLDPIELDIDVVFWS-QHISFLLVGC-IVLTS 472
R LL + L + L +V + + + + C I+LT+
Sbjct: 235 RRLLKSKPYENCL--LVLL-NV--QNAKAWNAFNLSCKILLTT 272
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 32.6 bits (73), Expect = 0.14
Identities = 8/21 (38%), Positives = 12/21 (57%), Gaps = 3/21 (14%)
Query: 239 KQEVAGLEELSRQLYLEAHDT 259
KQ + L+ S +LY A D+
Sbjct: 19 KQALKKLQA-SLKLY--ADDS 36
>2pff_A Fatty acid synthase subunit alpha, 3-oxoacyl-[acyl-carrier-PR; fatty
acid synthase, acyl-carrier-protein, beta-ketoacyl RED
beta-ketoacyl synthase, dehydratase; 4.00A {Saccharomyces
cerevisiae}
Length = 1688
Score = 29.5 bits (66), Expect = 3.7
Identities = 18/118 (15%), Positives = 31/118 (26%), Gaps = 52/118 (44%)
Query: 3 DHKIPNNMIRPMAVTIWLTYIYLFWKLGDPFPIL----SAKQGF----LSIEQ------G 48
+ I +++I + DP L S + F ++
Sbjct: 998 TYGISDDIISQV----------------DPI-TLFVLVSVVEAFIASGITDPYEMYKYVH 1040
Query: 49 ISRIGVIGVTVMALLSGFGAVNYPYTSMFYFIRKGHLDNM--GPRSS-----RVPNNM 99
+S +G SG G V+ +R D P + N M
Sbjct: 1041 VSEVGNCS------GSGMGGVS--------ALRGMFKDRFKDEPVQNDILQESFINTM 1084
>2ahu_A Putative enzyme YDIF; COA transferase, glutamyl thioester,
structural genomi montreal-kingston bacterial structural
genomics initiative; 1.90A {Escherichia coli} SCOP:
c.124.1.3 c.124.1.2 PDB: 2ahv_A* 2ahw_A*
Length = 531
Score = 27.7 bits (62), Expect = 9.6
Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 11/52 (21%)
Query: 40 QGFLSIEQGISRIGVIGVTVMALLSGFGAVNYPY-----TSMFYFIRKGHLD 86
L++E G IG ++ FGA TS F F G LD
Sbjct: 327 DFILTVETGP-----IGGITSQGIA-FGANVNTRAILDMTSQFDFYHGGGLD 372
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.328 0.142 0.440
Gapped
Lambda K H
0.267 0.0616 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 7,492,360
Number of extensions: 454652
Number of successful extensions: 967
Number of sequences better than 10.0: 1
Number of HSP's gapped: 962
Number of HSP's successfully gapped: 15
Length of query: 482
Length of database: 6,701,793
Length adjustment: 97
Effective length of query: 385
Effective length of database: 3,993,456
Effective search space: 1537480560
Effective search space used: 1537480560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 59 (26.7 bits)