RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14469
         (482 letters)



>d2e9xc1 a.278.1.3 (C:1088-1192) GINS complex subunit 3, PSF3 {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 105

 Score = 27.1 bits (60), Expect = 1.9
 Identities = 9/29 (31%), Positives = 13/29 (44%), Gaps = 2/29 (6%)

Query: 242 VAGLEELSRQLYLEAHDTCNMMEKIQWSK 270
           VA L+E+ R L+       N  +   W K
Sbjct: 78  VARLDEMERGLFQTGQKGLNDFQC--WEK 104


>d1bf5a1 a.47.1.1 (A:136-316) STAT-1, coiled coil domain {Human
           (Homo sapiens) [TaxId: 9606]}
          Length = 181

 Score = 26.7 bits (59), Expect = 4.2
 Identities = 8/23 (34%), Positives = 16/23 (69%)

Query: 233 ENVWQLKQEVAGLEELSRQLYLE 255
           E++ Q++Q++  LEEL ++   E
Sbjct: 133 ESLQQVRQQLKKLEELEQKYTYE 155


>d1bg1a1 a.47.1.1 (A:136-321) STAT3b {Mouse (Mus musculus) [TaxId:
           10090]}
          Length = 186

 Score = 26.8 bits (59), Expect = 4.4
 Identities = 7/20 (35%), Positives = 14/20 (70%)

Query: 233 ENVWQLKQEVAGLEELSRQL 252
           E+  Q +Q++  LEEL +++
Sbjct: 137 ESQLQTRQQIKKLEELQQKV 156


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.328    0.142    0.440 

Gapped
Lambda     K      H
   0.267   0.0638    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,827,695
Number of extensions: 83812
Number of successful extensions: 190
Number of sequences better than 10.0: 1
Number of HSP's gapped: 189
Number of HSP's successfully gapped: 7
Length of query: 482
Length of database: 2,407,596
Length adjustment: 89
Effective length of query: 393
Effective length of database: 1,185,626
Effective search space: 465951018
Effective search space used: 465951018
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.2 bits)