BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14473
(94 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|B Chain B, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
pdb|3DMK|C Chain C, Crystal Structure Of Down Syndrome Cell Adhesion Molecule
(Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains
Length = 816
Score = 97.8 bits (242), Expect = 1e-21, Method: Composition-based stats.
Identities = 45/54 (83%), Positives = 49/54 (90%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
+ R LPINRKQKVFPNGTLIIENVER SDQATYTCVAK +GYS+RG+LEVQVM
Sbjct: 563 DNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM 616
>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From
Human Roundabout Homolog 2
Length = 100
Score = 33.9 bits (76), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 15 SFYTEGRTLPI-NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSS 63
S+ EG T P + + + GTL I+N+ R SD TYTCVA ++ G +S
Sbjct: 41 SWLKEGFTFPGRDPRATIQEQGTLQIKNL-RISDTGTYTCVATSSSGETS 89
>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
pdb|2IEP|B Chain B, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2
Of The Receptor Tyrosine Kinase Musk
Length = 192
Score = 33.1 bits (74), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMG 73
N + V +G+L I NV+++ D Y CVAK + G YS LEV+V
Sbjct: 144 NSRIAVLESGSLRIHNVQKE-DAGQYRCVAKNSLGTAYSKLVKLEVEVFA 192
>pdb|2ID5|A Chain A, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|B Chain B, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|C Chain C, Crystal Structure Of The Lingo-1 Ectodomain
pdb|2ID5|D Chain D, Crystal Structure Of The Lingo-1 Ectodomain
Length = 477
Score = 31.2 bits (69), Expect = 0.14, Method: Composition-based stats.
Identities = 23/63 (36%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 2 PPLLLFLIYSYHQ-SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
PP +L+L H S + GR VFP+GTL + + Q D TY C+A A G
Sbjct: 414 PPAILWLSPRKHLVSAKSNGRL-------TVFPDGTLEVRYAQVQ-DNGTYLCIAANAGG 465
Query: 61 YSS 63
S
Sbjct: 466 NDS 468
>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 304
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 32/61 (52%), Gaps = 5/61 (8%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMGINEKPFSGLL 83
N + K +G L IE+ E ++DQ Y CVA + G YSS L V+V N P +L
Sbjct: 155 NGRIKQLRSGALQIESSE-ETDQGKYECVATNSAGVRYSSPANLYVRVQ--NVAPRFSIL 211
Query: 84 P 84
P
Sbjct: 212 P 212
>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin
Length = 100
Score = 30.0 bits (66), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/53 (35%), Positives = 27/53 (50%), Gaps = 5/53 (9%)
Query: 15 SFYTEGRTLPINRKQKVFPN----GTLIIENVERQSDQATYTCVAKTAQGYSS 63
S+Y GRT+ + K+ + +LI E V R SD Y CVAK G ++
Sbjct: 38 SWYLNGRTVQSDDLHKMIVSEKGLHSLIFE-VVRASDAGAYACVAKNRAGEAT 89
>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar
pdb|2YD8|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Lar In Complex
With Sucrose Octasulphate
Length = 214
Score = 29.6 bits (65), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
N + K +G L IE+ E +SDQ Y CVA + G YS+ L V+V
Sbjct: 155 NGRIKQLRSGALQIESSE-ESDQGKYECVATNSAGTRYSAPANLYVRV 201
>pdb|2YD3|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 202
Score = 29.3 bits (64), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
N + K +G L IE+ E ++DQ Y CVA + G YSS L V+V
Sbjct: 155 NGRIKQLRSGALQIESSE-ETDQGKYECVATNSAGVRYSSPANLYVRV 201
>pdb|2YD2|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Sigma
Length = 214
Score = 29.3 bits (64), Expect = 0.59, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
N + K +G L IE+ E ++DQ Y CVA + G YSS L V+V
Sbjct: 155 NGRIKQLRSGALQIESSE-ETDQGKYECVATNSAGVRYSSPANLYVRV 201
>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Chicken Receptor Protein Tyrosine Phosphatase Sigma
Length = 210
Score = 29.3 bits (64), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
N + K +G L IE+ E ++DQ Y CVA + G YSS L V+V
Sbjct: 155 NGRIKQLRSGGLQIESSE-ETDQGKYECVASNSAGVRYSSPANLYVRV 201
>pdb|3LCY|A Chain A, Titin Ig Tandem Domains A164-A165
pdb|3LCY|B Chain B, Titin Ig Tandem Domains A164-A165
pdb|3LCY|C Chain C, Titin Ig Tandem Domains A164-A165
pdb|3LCY|D Chain D, Titin Ig Tandem Domains A164-A165
Length = 197
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 17/48 (35%), Positives = 25/48 (52%), Gaps = 4/48 (8%)
Query: 16 FYTEGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQG 60
+Y G+ L +RK K+ +G TL + E Q D+ YTC+A G
Sbjct: 41 WYRFGKELIQSRKYKMSSDGRTHTLTV-MTEEQEDEGVYTCIATNEVG 87
>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar
Length = 201
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 26/47 (55%), Gaps = 3/47 (6%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQ 70
N + K +G L IE+ E +SDQ Y CVA + G YS+ L V+
Sbjct: 156 NGRIKQLRSGALQIESSE-ESDQGKYECVATNSAGTRYSAPANLYVR 201
>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of
Drosophila Receptor Protein Tyrosine Phosphatase Dlar
Length = 212
Score = 28.1 bits (61), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 25/46 (54%), Gaps = 3/46 (6%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMGINEK 77
+G L IEN R+ DQ Y CVA+ + G +S L V+V + K
Sbjct: 162 DGFLQIEN-SREEDQGKYECVAENSMGTEHSKATNLYVKVRRVGTK 206
>pdb|3S35|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S36|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
pdb|3S37|X Chain X, Structural Basis For The Function Of Two Anti-Vegf
Receptor Antibodies
Length = 122
Score = 27.7 bits (60), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPF 79
TL I+ V R SDQ YTC A + T + ++EKPF
Sbjct: 75 TLTIDGVTR-SDQGLYTCAASSGLMTKKNSTF----VRVHEKPF 113
>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4
pdb|3JXA|B Chain B, Immunoglobulin Domains 1-4 Of Mouse Cntn4
Length = 383
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 24 PINRKQKVF-PNGTLIIENVERQSDQATYTCVAKTAQG 60
PI RK + NG L I N + Q D +Y CVA+ ++G
Sbjct: 245 PIARKARRHKSNGILEIPNFQ-QEDAGSYECVAENSRG 281
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQG 60
+G+L+I N + D TY C+A + G
Sbjct: 60 DGSLLINNPNKTQDAGTYQCIATNSFG 86
>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex
Length = 384
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 22/38 (57%), Gaps = 2/38 (5%)
Query: 24 PINRKQKVF-PNGTLIIENVERQSDQATYTCVAKTAQG 60
PI RK + NG L I N + Q D +Y CVA+ ++G
Sbjct: 246 PIARKARRHKSNGILEIPNFQ-QEDAGSYECVAENSRG 282
Score = 26.9 bits (58), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 10/27 (37%), Positives = 16/27 (59%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQG 60
+G+L+I N + D TY C+A + G
Sbjct: 61 DGSLLINNPNKTQDAGTYQCIATNSFG 87
>pdb|3V6B|R Chain R, Vegfr-2VEGF-E Complex Structure
Length = 424
Score = 27.7 bits (60), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPF 79
TL I+ V R SDQ YTC A + T + ++EKPF
Sbjct: 161 TLTIDGVTR-SDQGLYTCAASSGLMTKKNSTF----VRVHEKPF 199
>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar
pdb|3PXJ|B Chain B, Tandem Ig Repeats Of Dlar
pdb|3PXJ|C Chain C, Tandem Ig Repeats Of Dlar
pdb|3PXJ|D Chain D, Tandem Ig Repeats Of Dlar
Length = 210
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 13/27 (48%), Positives = 17/27 (62%), Gaps = 1/27 (3%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQG 60
+G L IEN R+ DQ Y CVA+ + G
Sbjct: 164 DGFLQIEN-SREEDQGKYECVAENSMG 189
>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure
Length = 772
Score = 27.3 bits (59), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/44 (38%), Positives = 22/44 (50%), Gaps = 5/44 (11%)
Query: 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPF 79
TL I+ V R SDQ YTC A + T + ++EKPF
Sbjct: 291 TLTIDGVTR-SDQGLYTCAASSGLMTKKNSTF----VRVHEKPF 329
>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken
Length = 382
Score = 27.3 bits (59), Expect = 2.5, Method: Composition-based stats.
Identities = 16/43 (37%), Positives = 23/43 (53%), Gaps = 2/43 (4%)
Query: 18 TEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
TE + P +R + V G L+I N + D +Y CVA A+G
Sbjct: 46 TELKMGPDSRYRLV--AGDLVISNPVKAKDAGSYQCVATNARG 86
>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor
Length = 403
Score = 26.9 bits (58), Expect = 2.5, Method: Composition-based stats.
Identities = 20/54 (37%), Positives = 30/54 (55%), Gaps = 8/54 (14%)
Query: 26 NRKQKVFPNGTLIIENV----ERQSDQATYTCVAKTAQGYS--SRGTLEVQVMG 73
+RKQ++ PNG+L+I+N+ + D+ Y C A S SR T +V V G
Sbjct: 69 DRKQQL-PNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISR-TAKVMVAG 120
>pdb|3Q5T|A Chain A, V BetaV BETA HOMODIMERIZATION-Based Pre-Tcr Model
Suggested By Tcr Beta Crystal Structures
Length = 241
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 29/62 (46%), Gaps = 8/62 (12%)
Query: 2 PPLLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGT---LIIENVERQSDQATYTCVAKTA 58
P LL++ + + LP +R V P GT L I++ +Q D ATY C + +
Sbjct: 44 PQLLVY----FRDEAVIDNSQLPSDRFSAVRPKGTNSTLKIQSA-KQGDTATYLCASSSG 98
Query: 59 QG 60
G
Sbjct: 99 VG 100
>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human
Roundabout Homo1
Length = 118
Score = 26.6 bits (57), Expect = 4.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 26/54 (48%), Gaps = 2/54 (3%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGT-LEVQVMGINEKP 78
+ + K NG L I + D YTC+A T G ++ +EVQ G+ +P
Sbjct: 53 DSRIKQLENGVLQIR-YAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQP 105
>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
pdb|2YD7|B Chain B, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human
Receptor Protein Tyrosine Phosphatase Delta
Length = 212
Score = 26.2 bits (56), Expect = 5.2, Method: Compositional matrix adjust.
Identities = 17/38 (44%), Positives = 21/38 (55%), Gaps = 3/38 (7%)
Query: 35 GTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQ 70
G L IE E +SDQ Y CVA + G YS+ L V+
Sbjct: 167 GALQIEQSE-ESDQGKYECVATNSAGTRYSAPANLYVR 203
>pdb|1HWM|A Chain A, Ebulin,Orthorhombic Crystal Form Model
pdb|1HWN|A Chain A, Ebulin Complexed With Galactose, Trigonal Crystal Form
pdb|1HWO|A Chain A, Ebulin Complexed With Lactose, Trigonal Crystal Form
pdb|1HWP|A Chain A, Ebulin Complexed With Pteroic Acid, Trigonal Crystal Form
Length = 254
Score = 25.8 bits (55), Expect = 6.2, Method: Compositional matrix adjust.
Identities = 12/27 (44%), Positives = 17/27 (62%)
Query: 66 TLEVQVMGINEKPFSGLLPKINKETSP 92
+LEVQ+ G N PFSG + N + +P
Sbjct: 201 SLEVQLSGDNVSPFSGTVQLQNYDHTP 227
>pdb|3SJV|D Chain D, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|I Chain I, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|N Chain N, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SJV|S Chain S, Crystal Structure Of The Rl42 Tcr In Complex With
Hla-B8-Flr
pdb|3SKN|A Chain A, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|C Chain C, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|E Chain E, Crystal Structure Of The Rl42 Tcr Unliganded
pdb|3SKN|G Chain G, Crystal Structure Of The Rl42 Tcr Unliganded
Length = 203
Score = 25.8 bits (55), Expect = 6.6, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 33/65 (50%), Gaps = 8/65 (12%)
Query: 3 PLLLFLIYSYHQSFYTEGR-TLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY 61
P LL +YS S +GR T +NR + +L+I + + SD ATY CV + +
Sbjct: 46 PKLLMSVYS---SGNEDGRFTAQLNRASQYI---SLLIRD-SKLSDSATYLCVVRAGKLI 98
Query: 62 SSRGT 66
+GT
Sbjct: 99 FGQGT 103
>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1
Length = 381
Score = 25.4 bits (54), Expect = 8.1, Method: Compositional matrix adjust.
Identities = 15/43 (34%), Positives = 20/43 (46%), Gaps = 2/43 (4%)
Query: 18 TEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
TE + P +R Q V G L+I N + D Y C+A G
Sbjct: 45 TEMKLEPGSRHQLV--GGNLVIMNPTKAQDAGVYQCLASNPVG 85
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.316 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,675,667
Number of Sequences: 62578
Number of extensions: 84757
Number of successful extensions: 419
Number of sequences better than 100.0: 30
Number of HSP's better than 100.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 405
Number of HSP's gapped (non-prelim): 37
length of query: 94
length of database: 14,973,337
effective HSP length: 61
effective length of query: 33
effective length of database: 11,156,079
effective search space: 368150607
effective search space used: 368150607
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 45 (21.9 bits)