BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14473
(94 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2
OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3
Length = 2074
Score = 54.3 bits (129), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 20 GRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
GR LP + +Q+V P+G+L I V++ SD YTC A+ QG+S+R + EV V+
Sbjct: 557 GRELPDDIRQRVQPDGSLTISPVQKNSDSGVYTCWARNKQGHSARRSGEVTVI 609
Score = 30.8 bits (68), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 32/56 (57%), Gaps = 5/56 (8%)
Query: 16 FYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
+Y +GR LP + + + TL++ V R+ ++ Y CV + +G + + T E+Q+
Sbjct: 368 WYKDGRQLPSSGRVE----DTLVVPRVSRE-NRGMYQCVVRRPEGDTFQATAELQL 418
>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens
GN=DSCAML1 PE=1 SV=2
Length = 2053
Score = 38.1 bits (87), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 12 YHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTC 53
Y +Y + LP N +Q VF NGTL + +V++ D+ Y C
Sbjct: 534 YSIKWYKDALLLPDNHRQVVFENGTLKLTDVQKGMDEGEYLC 575
>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus
musculus GN=Dscaml1 PE=1 SV=2
Length = 2053
Score = 38.1 bits (87), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 16/42 (38%), Positives = 24/42 (57%)
Query: 12 YHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTC 53
Y +Y + LP N +Q VF NGTL + +V++ D+ Y C
Sbjct: 534 YSIKWYKDALLLPDNHRQVVFENGTLKLTDVQKGMDEGEYLC 575
>sp|Q02246|CNTN2_HUMAN Contactin-2 OS=Homo sapiens GN=CNTN2 PE=1 SV=1
Length = 1040
Score = 37.4 bits (85), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%), Gaps = 3/57 (5%)
Query: 16 FYTEGRTLPINRKQ-KVFPNGTLIIENVERQSDQATYTCVAKTAQGYS-SRGTLEVQ 70
+++G + +N + V P+GTLII N+ R SD+ YTC A+ G + S G L V+
Sbjct: 451 LWSKGTEILVNSSRVTVTPDGTLIIRNISR-SDEGKYTCFAENFMGKANSTGILSVR 506
>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus
GN=Dscam PE=1 SV=1
Length = 2013
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 12 YHQSFYTEGRTLPINRKQKVFPN-GTLIIENVERQSDQATYTC 53
Y +Y LP N +Q F N GTL + +V+++ D+ YTC
Sbjct: 533 YSIKWYKNANLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTC 575
>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus
GN=Dscam PE=1 SV=1
Length = 2013
Score = 36.6 bits (83), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 12 YHQSFYTEGRTLPINRKQKVFPN-GTLIIENVERQSDQATYTC 53
Y +Y LP N +Q F N GTL + +V+++ D+ YTC
Sbjct: 533 YSIKWYKNANLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTC 575
>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1
SV=2
Length = 2012
Score = 36.2 bits (82), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 16/43 (37%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 12 YHQSFYTEGRTLPINRKQKVFPN-GTLIIENVERQSDQATYTC 53
Y +Y LP N +Q F N GTL + +V+++ D+ YTC
Sbjct: 533 YSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTC 575
>sp|A1KZ92|PXDNL_HUMAN Peroxidasin-like protein OS=Homo sapiens GN=PXDNL PE=1 SV=3
Length = 1463
Score = 35.4 bits (80), Expect = 0.11, Method: Composition-based stats.
Identities = 18/55 (32%), Positives = 31/55 (56%), Gaps = 1/55 (1%)
Query: 31 VFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGLLPK 85
VF +GTL+I N R+SDQ Y C+A+ + G + + ++ + KP + P+
Sbjct: 284 VFDDGTLMIRNT-RESDQGVYQCMARNSAGEAKTQSAMLRYSSLPAKPSFVIQPQ 337
>sp|Q6GQU6|LIGO3_MOUSE Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 3 OS=Mus musculus GN=Lingo3
PE=2 SV=2
Length = 589
Score = 35.0 bits (79), Expect = 0.13, Method: Composition-based stats.
Identities = 20/44 (45%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 28 KQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQ 70
+ +V P GTL I + R D TYTCVA A G + TL VQ
Sbjct: 455 RARVLPGGTLTIADT-RPQDSGTYTCVASNAGGNDTYFATLTVQ 497
>sp|P52743|ZN137_HUMAN Putative zinc finger protein 137 OS=Homo sapiens GN=ZNF137P PE=5
SV=1
Length = 207
Score = 35.0 bits (79), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 31/69 (44%), Gaps = 2/69 (2%)
Query: 12 YHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEV-Q 70
YHQ+ + G+ N KVF N T I + ++ +Y C K + + R L V Q
Sbjct: 61 YHQAIHGVGKLCKCNDCHKVFSNATTIANHWRIHNEDRSYKC-NKCGKIFRHRSYLAVYQ 119
Query: 71 VMGINEKPF 79
EKP+
Sbjct: 120 RTHTGEKPY 128
>sp|Q9NR99|MXRA5_HUMAN Matrix-remodeling-associated protein 5 OS=Homo sapiens GN=MXRA5 PE=2
SV=3
Length = 2828
Score = 34.7 bits (78), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 10/67 (14%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGLLPK 85
+ K +++ +GTL+I+ +R SD YTC+ + + G R T+ + V N +P PK
Sbjct: 2392 SEKYQIYQDGTLLIQKAQR-SDSGNYTCLVRNSAG-EDRKTVWIHV---NVQP-----PK 2441
Query: 86 INKETSP 92
IN +P
Sbjct: 2442 INGNPNP 2448
Score = 33.5 bits (75), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 3/56 (5%)
Query: 31 VFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGT-LEVQVMGINEKPFSGLLPK 85
VFPNGTL I N+ + D Y CVA G + R L VQ N + +G P+
Sbjct: 2101 VFPNGTLYIRNLAPK-DSGRYECVAANLVGSARRTVQLNVQRAAANAR-ITGTSPR 2154
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/35 (40%), Positives = 22/35 (62%), Gaps = 1/35 (2%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
+ + KVF NGTL++++V + D Y CVA+ G
Sbjct: 2195 DSRIKVFANGTLVVKSVTDK-DAGDYLCVARNKVG 2228
>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2
Length = 5065
Score = 33.9 bits (76), Expect = 0.28, Method: Composition-based stats.
Identities = 17/44 (38%), Positives = 26/44 (59%), Gaps = 1/44 (2%)
Query: 20 GRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSS 63
G+ L +R+ + P+G+L +ENVE D TY CVA G ++
Sbjct: 4346 GQPLRASRRLRTLPDGSLWLENVE-TGDAGTYDCVAHNLLGSAT 4388
Score = 32.7 bits (73), Expect = 0.74, Method: Composition-based stats.
Identities = 16/37 (43%), Positives = 24/37 (64%), Gaps = 1/37 (2%)
Query: 28 KQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR 64
K + P+G L+++N+E Q D TYTC A+ A G + R
Sbjct: 4084 KFTIQPSGELLVKNLEGQ-DAGTYTCTAENAVGRARR 4119
Score = 32.3 bits (72), Expect = 0.91, Method: Composition-based stats.
Identities = 22/61 (36%), Positives = 36/61 (59%), Gaps = 3/61 (4%)
Query: 13 HQSFYTEGRTLPINRKQKVFPNG-TLIIENVERQSDQATYTCVAKTAQGYSSRG-TLEVQ 70
H S+ +G LP++++ + +G TL I V+ +D +TCVA + G + R TL+VQ
Sbjct: 3344 HVSWLKDGLPLPLSQRTLLHGSGHTLRISKVQ-LADAGIFTCVAASPAGVADRNFTLQVQ 3402
Query: 71 V 71
V
Sbjct: 3403 V 3403
>sp|P0C6S8|LIGO3_HUMAN Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 3 OS=Homo sapiens GN=LINGO3
PE=2 SV=1
Length = 592
Score = 33.9 bits (76), Expect = 0.29, Method: Composition-based stats.
Identities = 16/33 (48%), Positives = 20/33 (60%), Gaps = 1/33 (3%)
Query: 28 KQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
+ +V P GTL I++ R D TYTCVA A G
Sbjct: 456 RARVLPGGTLEIQDA-RPQDSGTYTCVASNAGG 487
>sp|A4IFW2|PTPRF_DANRE Receptor-type tyrosine-protein phosphatase F OS=Danio rerio
GN=ptprf PE=2 SV=1
Length = 1909
Score = 33.9 bits (76), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 27/69 (39%), Positives = 36/69 (52%), Gaps = 6/69 (8%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMGINEKPFSGLL 83
N + K +G L IEN E +SDQ Y CVA + G YS+ L V+V + + FS +
Sbjct: 182 NGRIKQLRSGALQIENSE-ESDQGKYECVATNSAGTRYSAPANLYVRVRRVPPR-FS--I 237
Query: 84 PKINKETSP 92
P N E P
Sbjct: 238 PPTNHEVMP 246
>sp|Q6WRI0|IGS10_HUMAN Immunoglobulin superfamily member 10 OS=Homo sapiens GN=IGSF10 PE=2
SV=1
Length = 2623
Score = 33.9 bits (76), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR 64
N K +F NGTL I N+ SD+ TY C+A ++ G R
Sbjct: 1891 NSKLFLFSNGTLYIRNLA-SSDRGTYECIATSSTGSERR 1928
Score = 30.4 bits (67), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 16/35 (45%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
N + +V PNGTL I+ VE Q D+ Y C A G
Sbjct: 1697 NSRVQVLPNGTLSIQRVEIQ-DRGQYLCSASNLFG 1730
>sp|Q61006|MUSK_MOUSE Muscle, skeletal receptor tyrosine-protein kinase OS=Mus musculus
GN=Musk PE=1 SV=1
Length = 868
Score = 33.5 bits (75), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMG 73
N + V +G+L I NV+++ D Y CVAK + G YS LEV+V
Sbjct: 164 NSRIAVLESGSLRIHNVQKE-DAGQYRCVAKNSLGTAYSKLVKLEVEVFA 212
>sp|Q62838|MUSK_RAT Muscle, skeletal receptor tyrosine protein kinase OS=Rattus
norvegicus GN=Musk PE=1 SV=1
Length = 868
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMG 73
N + V +G+L I NV+++ D Y CVAK + G YS LEV+V
Sbjct: 164 NSRIAVLESGSLRIHNVQKE-DAGQYRCVAKNSLGTAYSKLVKLEVEVFA 212
>sp|O15146|MUSK_HUMAN Muscle, skeletal receptor tyrosine-protein kinase OS=Homo sapiens
GN=MUSK PE=1 SV=1
Length = 869
Score = 33.5 bits (75), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMG 73
N + V +G+L I NV+++ D Y CVAK + G YS LEV+V
Sbjct: 164 NSRIAVLESGSLRIHNVQKE-DAGQYRCVAKNSLGTAYSKVVKLEVEVFA 212
>sp|Q9HCK4|ROBO2_HUMAN Roundabout homolog 2 OS=Homo sapiens GN=ROBO2 PE=1 SV=2
Length = 1378
Score = 33.5 bits (75), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 15 SFYTEGRTLP-INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSS 63
S+ EG T P + + + GTL I+N+ R SD TYTCVA ++ G +S
Sbjct: 450 SWLKEGFTFPGRDPRATIQEQGTLQIKNL-RISDTGTYTCVATSSSGETS 498
>sp|Q3UQ28|PXDN_MOUSE Peroxidasin homolog OS=Mus musculus GN=Pxdn PE=2 SV=2
Length = 1475
Score = 33.1 bits (74), Expect = 0.54, Method: Composition-based stats.
Identities = 21/47 (44%), Positives = 28/47 (59%), Gaps = 3/47 (6%)
Query: 14 QSFYTEG-RT-LPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTA 58
Q +T G RT LPI+ + + P+G L I+NV QSD YTC A +
Sbjct: 369 QITWTRGDRTPLPIDPRVNITPSGGLYIQNVA-QSDSGEYTCFASNS 414
>sp|P22063|CNTN2_RAT Contactin-2 OS=Rattus norvegicus GN=Cntn2 PE=1 SV=1
Length = 1040
Score = 32.7 bits (73), Expect = 0.67, Method: Compositional matrix adjust.
Identities = 19/41 (46%), Positives = 25/41 (60%), Gaps = 2/41 (4%)
Query: 31 VFPNGTLIIENVERQSDQATYTCVAKTAQGYS-SRGTLEVQ 70
V +GTLII N+ R SD+ YTC A+ G + S G L V+
Sbjct: 469 VTSDGTLIIRNISR-SDEGKYTCFAENFMGKANSTGILSVR 508
>sp|A2AJ76|HMCN2_MOUSE Hemicentin-2 OS=Mus musculus GN=Hmcn2 PE=1 SV=1
Length = 5100
Score = 32.7 bits (73), Expect = 0.73, Method: Composition-based stats.
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 30 KVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTL 67
KVFP G ++ R SD +Y+CVA +A G R +
Sbjct: 2061 KVFPGGQVLTVASARASDSGSYSCVAVSAVGEDRRDVI 2098
Score = 29.3 bits (64), Expect = 7.6, Method: Composition-based stats.
Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
Query: 33 PNGTLIIENVERQSDQATYTCVAKTAQGYSSR 64
P+G L+++N E Q D TY C A+ A G + R
Sbjct: 4123 PSGELLVKNSEGQ-DAGTYICTAENAVGRARR 4153
>sp|Q61330|CNTN2_MOUSE Contactin-2 OS=Mus musculus GN=Cntn2 PE=2 SV=2
Length = 1040
Score = 32.7 bits (73), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 18/38 (47%), Positives = 24/38 (63%), Gaps = 2/38 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYS-SRGTLEVQ 70
+GTLII N+ R SD+ YTC A+ G + S G L V+
Sbjct: 472 DGTLIIRNISR-SDEGKYTCFAENFMGKANSTGILSVR 508
>sp|Q6UXK5|LRRN1_HUMAN Leucine-rich repeat neuronal protein 1 OS=Homo sapiens GN=LRRN1
PE=1 SV=1
Length = 716
Score = 32.3 bits (72), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 25 INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEV 69
++ K K+ GTL I N++ + D YTCVA+ QG +R T++V
Sbjct: 472 LSDKYKLSSEGTLEISNIQIE-DSGRYTCVAQNVQGADTRVATIKV 516
>sp|Q32Q07|LRRN1_RAT Leucine-rich repeat neuronal protein 1 OS=Rattus norvegicus
GN=Lrrn1 PE=2 SV=1
Length = 716
Score = 32.3 bits (72), Expect = 0.87, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 25 INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEV 69
++ K K+ GTL I N++ + D YTCVA+ QG +R T++V
Sbjct: 472 LSDKYKLSSEGTLEIANIQIE-DSGRYTCVAQNVQGADTRVATIKV 516
>sp|Q61809|LRRN1_MOUSE Leucine-rich repeat neuronal protein 1 OS=Mus musculus GN=Lrrn1
PE=2 SV=1
Length = 716
Score = 32.3 bits (72), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%), Gaps = 2/46 (4%)
Query: 25 INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEV 69
++ K K+ GTL I N++ + D YTCVA+ QG +R T++V
Sbjct: 472 LSDKYKLSSEGTLEIANIQIE-DSGRYTCVAQNVQGADTRVATIKV 516
>sp|Q9N008|LIGO1_MACFA Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Macaca fascicularis
GN=LINGO1 PE=2 SV=1
Length = 614
Score = 32.3 bits (72), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSS 63
N + VFP+GTL + + Q D TY C+A A G S
Sbjct: 465 NGRLTVFPDGTLEVRYAQVQ-DNGTYLCIAANAGGNDS 501
>sp|Q96FE5|LIGO1_HUMAN Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Homo sapiens GN=LINGO1
PE=1 SV=2
Length = 620
Score = 32.3 bits (72), Expect = 0.97, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSS 63
N + VFP+GTL + + Q D TY C+A A G S
Sbjct: 471 NGRLTVFPDGTLEVRYAQVQ-DNGTYLCIAANAGGNDS 507
>sp|Q6ZNL6|FGD5_HUMAN FYVE, RhoGEF and PH domain-containing protein 5 OS=Homo sapiens
GN=FGD5 PE=1 SV=3
Length = 1462
Score = 32.3 bits (72), Expect = 0.97, Method: Composition-based stats.
Identities = 18/57 (31%), Positives = 32/57 (56%), Gaps = 3/57 (5%)
Query: 12 YHQSFYTEGRTLPINRKQKVFPNGT-LIIENVERQSDQATYTCVAKTAQGYSSRGTL 67
Y +SF EGR +P++ Q+ P G+ L ++R+ D + +CV ++ +S R L
Sbjct: 547 YPRSFSVEGREIPVSVYQE--PEGSGLDDHRIKRKEDNLSLSCVIGSSGSFSQRNHL 601
>sp|P60029|IRPL1_PANTR Interleukin-1 receptor accessory protein-like 1 OS=Pan troglodytes
GN=IL1RAPL1 PE=2 SV=1
Length = 696
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 16 FYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG-I 74
+Y E RT R VF TL+I V R+ D YTC K G+ R T E+ V +
Sbjct: 181 WYKECRT-KTWRPSIVFKRDTLLIREV-REDDIGNYTCELKYG-GFVVRRTTELTVTAPL 237
Query: 75 NEKPFSGLLPKINKET 90
+KP L P +K T
Sbjct: 238 TDKPPKLLYPMESKLT 253
>sp|Q9NZN1|IRPL1_HUMAN Interleukin-1 receptor accessory protein-like 1 OS=Homo sapiens
GN=IL1RAPL1 PE=1 SV=2
Length = 696
Score = 32.0 bits (71), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 28/76 (36%), Positives = 36/76 (47%), Gaps = 4/76 (5%)
Query: 16 FYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG-I 74
+Y E RT R VF TL+I V R+ D YTC K G+ R T E+ V +
Sbjct: 181 WYKECRT-KTWRPSIVFKRDTLLIREV-REDDIGNYTCELKYG-GFVVRRTTELTVTAPL 237
Query: 75 NEKPFSGLLPKINKET 90
+KP L P +K T
Sbjct: 238 TDKPPKLLYPMESKLT 253
>sp|P28685|CNTN2_CHICK Contactin-2 OS=Gallus gallus GN=CNTN2 PE=1 SV=1
Length = 1036
Score = 32.0 bits (71), Expect = 1.3, Method: Composition-based stats.
Identities = 20/57 (35%), Positives = 33/57 (57%), Gaps = 3/57 (5%)
Query: 16 FYTEGRTLPINRKQ-KVFPNGTLIIENVERQSDQATYTCVAKTAQGYS-SRGTLEVQ 70
+T+G L N + + +GTLI++N+ + SD+ YTC A+ G + S G L V+
Sbjct: 446 LWTKGTELLTNSSRVTITADGTLILQNISK-SDEGKYTCFAENFMGKANSTGILSVR 501
>sp|A4IIW9|LIGO1_XENTR Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Xenopus tropicalis
GN=lingo1 PE=2 SV=1
Length = 606
Score = 31.6 bits (70), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
N + VFP+GTL + + Q D TY C+A A G
Sbjct: 457 NGRLTVFPDGTLEVRYAQVQ-DNGTYHCIASNAGG 490
>sp|Q7TPD3|ROBO2_MOUSE Roundabout homolog 2 OS=Mus musculus GN=Robo2 PE=2 SV=2
Length = 1470
Score = 31.6 bits (70), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%), Gaps = 2/50 (4%)
Query: 15 SFYTEGRT-LPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSS 63
S+ EG T L + + + GTL I+N+ R SD TYTCVA ++ G +S
Sbjct: 454 SWLKEGFTFLGRDPRATIQDQGTLQIKNL-RISDTGTYTCVATSSSGETS 502
>sp|Q3V1M1|IGS10_MOUSE Immunoglobulin superfamily member 10 OS=Mus musculus GN=Igsf10 PE=2
SV=2
Length = 2594
Score = 31.6 bits (70), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 27/54 (50%), Gaps = 4/54 (7%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPF 79
+RK V P+GTLII N+ D+ Y CVA G S L V++ I P
Sbjct: 1765 SRKVWVTPDGTLIIHNLSLY-DRGFYKCVANNPSGQDS---LLVKIQVITAPPV 1814
Score = 30.8 bits (68), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 14/34 (41%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Query: 31 VFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR 64
++PNGTL I N+ S + TY C+A ++ G R
Sbjct: 1867 LYPNGTLYIRNIV-SSVRGTYECIATSSSGSERR 1899
Score = 30.0 bits (66), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Query: 31 VFPNGTLIIENVERQSDQATYTCVAKTAQG 60
V+PNG+L+I +V + D Y CVA+ G
Sbjct: 1966 VYPNGSLVIGSVT-EKDGGDYLCVARNKMG 1994
>sp|Q50L44|LIGO1_CHICK Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Gallus gallus
GN=LINGO1 PE=2 SV=1
Length = 613
Score = 31.2 bits (69), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 15/35 (42%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
N + VFP+GTL + + Q D TY C+A A G
Sbjct: 464 NGRLTVFPDGTLEVRYAQIQ-DNGTYLCIASNAGG 497
>sp|Q5RDJ4|LIGO1_PONAB Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Pongo abelii GN=LINGO1
PE=2 SV=1
Length = 614
Score = 31.2 bits (69), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 16/38 (42%), Positives = 20/38 (52%), Gaps = 1/38 (2%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSS 63
N + VFP GTL + + Q D TY C+A A G S
Sbjct: 465 NGRLTVFPGGTLEVRYAQVQ-DNGTYLCIAANAGGNDS 501
>sp|Q9D1T0|LIGO1_MOUSE Leucine-rich repeat and immunoglobulin-like domain-containing nogo
receptor-interacting protein 1 OS=Mus musculus GN=Lingo1
PE=1 SV=1
Length = 614
Score = 30.8 bits (68), Expect = 2.3, Method: Composition-based stats.
Identities = 16/38 (42%), Positives = 21/38 (55%), Gaps = 1/38 (2%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSS 63
N + VFP+GTL + + Q D TY C+A A G S
Sbjct: 465 NGRLTVFPDGTLEVRYAQVQ-DNGTYLCIAANAGGNDS 501
>sp|B4GBH0|PTK7_DROPE Tyrosine-protein kinase-like otk OS=Drosophila persimilis GN=otk
PE=3 SV=1
Length = 1035
Score = 30.8 bits (68), Expect = 2.5, Method: Composition-based stats.
Identities = 17/39 (43%), Positives = 24/39 (61%), Gaps = 2/39 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
NGTLI NV R + YTC A+++QG S T+ + V+
Sbjct: 430 NGTLIFRNV-RAEHRGNYTCQARSSQGQIS-ATVSINVV 466
>sp|P35918|VGFR2_MOUSE Vascular endothelial growth factor receptor 2 OS=Mus musculus
GN=Kdr PE=1 SV=1
Length = 1367
Score = 30.8 bits (68), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 22/62 (35%), Positives = 30/62 (48%), Gaps = 12/62 (19%)
Query: 25 INRKQKVFPN-------GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEK 77
+NR K FP TL IE+V + SDQ YTCVA + + T + ++ K
Sbjct: 275 VNRDVKPFPGTVAKMFLSTLTIESVTK-SDQGEYTCVASSGRMIKRNRTF----VRVHTK 329
Query: 78 PF 79
PF
Sbjct: 330 PF 331
>sp|P10586|PTPRF_HUMAN Receptor-type tyrosine-protein phosphatase F OS=Homo sapiens
GN=PTPRF PE=1 SV=2
Length = 1907
Score = 30.8 bits (68), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMGINEKPFSGLL 83
N + K +G L IE+ E +SDQ Y CVA + G YS+ L V+V + + FS +
Sbjct: 181 NGRIKQLRSGALQIESSE-ESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPR-FS--I 236
Query: 84 PKINKETSPSA 94
P ++E P
Sbjct: 237 PPSSQEVMPGG 247
>sp|Q64604|PTPRF_RAT Receptor-type tyrosine-protein phosphatase F OS=Rattus norvegicus
GN=Ptprf PE=2 SV=1
Length = 1898
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMGINEKPFSGLL 83
N + K +G L IE+ E +SDQ Y CVA + G YS+ L V+V + + FS +
Sbjct: 181 NGRIKQLRSGALQIESSE-ESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPR-FS--I 236
Query: 84 PKINKETSPSA 94
P ++E P
Sbjct: 237 PPSSQEVMPGG 247
>sp|Q868Z9|PPN_DROME Papilin OS=Drosophila melanogaster GN=Ppn PE=1 SV=2
Length = 2898
Score = 30.4 bits (67), Expect = 3.0, Method: Composition-based stats.
Identities = 18/45 (40%), Positives = 22/45 (48%), Gaps = 1/45 (2%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78
NG L I V RQ+D TY CVA G R + +QV +P
Sbjct: 2574 NGDLTIVQV-RQTDDGTYVCVASNGLGEPVRREVALQVTEPVSQP 2617
>sp|A7MBJ4|PTPRF_BOVIN Receptor-type tyrosine-protein phosphatase F OS=Bos taurus GN=PTPRF
PE=2 SV=1
Length = 1898
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMGINEKPFSGLL 83
N + K +G L IE+ E +SDQ Y CVA + G YS+ L V+V + + FS +
Sbjct: 181 NGRIKQLRSGALQIESSE-ESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPR-FS--I 236
Query: 84 PKINKETSPSA 94
P ++E P
Sbjct: 237 PPSSQEVMPGG 247
>sp|A2A8L5|PTPRF_MOUSE Receptor-type tyrosine-protein phosphatase F OS=Mus musculus
GN=Ptprf PE=1 SV=1
Length = 1898
Score = 30.4 bits (67), Expect = 3.1, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 6/71 (8%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMGINEKPFSGLL 83
N + K +G L IE+ E +SDQ Y CVA + G YS+ L V+V + + FS +
Sbjct: 181 NGRIKQLRSGALQIESSE-ESDQGKYECVATNSAGTRYSAPANLYVRVRRVAPR-FS--I 236
Query: 84 PKINKETSPSA 94
P ++E P
Sbjct: 237 PPSSQEVMPGG 247
>sp|P98160|PGBM_HUMAN Basement membrane-specific heparan sulfate proteoglycan core
protein OS=Homo sapiens GN=HSPG2 PE=1 SV=4
Length = 4391
Score = 30.4 bits (67), Expect = 3.2, Method: Composition-based stats.
Identities = 15/26 (57%), Positives = 19/26 (73%), Gaps = 1/26 (3%)
Query: 35 GTLIIENVERQSDQATYTCVAKTAQG 60
GTLII +V ++SDQ YTC A A+G
Sbjct: 462 GTLIIRDV-KESDQGAYTCEAMNARG 486
Score = 28.9 bits (63), Expect = 9.6, Method: Composition-based stats.
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 4/55 (7%)
Query: 31 VFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGLLPK 85
+ PNG++I R S+ TY CVA A G + V + ++ P +LP+
Sbjct: 3069 ISPNGSIITIVGTRPSNHGTYRCVASNAYGVAQ----SVVNLSVHGPPTVSVLPE 3119
>sp|Q92626|PXDN_HUMAN Peroxidasin homolog OS=Homo sapiens GN=PXDN PE=1 SV=2
Length = 1479
Score = 30.4 bits (67), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 14/57 (24%), Positives = 30/57 (52%), Gaps = 1/57 (1%)
Query: 22 TLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78
++ + + + +GTL+I+N + ++DQ Y C+AK G + ++ G +P
Sbjct: 287 SMKTDSRLNLLDDGTLMIQNTQ-ETDQGIYQCMAKNVAGEVKTQEVTLRYFGSPARP 342
>sp|Q6WRH9|IGS10_RAT Immunoglobulin superfamily member 10 OS=Rattus norvegicus GN=Igsf10
PE=2 SV=1
Length = 2597
Score = 30.4 bits (67), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 27/47 (57%), Gaps = 2/47 (4%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
+R + + P GTL+I+N++ SD Y C A+ G + T +QV+
Sbjct: 2553 HRSEMLHPQGTLVIQNLQ-TSDSGVYKCRAQNLLG-TDYATTYIQVL 2597
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 27/53 (50%), Gaps = 4/53 (7%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78
+RK V P+GTLII N+ D+ Y CVA G S L V++ I P
Sbjct: 1768 SRKVWVTPDGTLIIYNLSLY-DRGFYKCVASNPSGQDS---LLVKIQVITAPP 1816
>sp|Q2EY13|PRTGB_DANRE Protogenin B (Fragment) OS=Danio rerio GN=prtgb PE=2 SV=1
Length = 1069
Score = 30.0 bits (66), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 11/31 (35%), Positives = 18/31 (58%)
Query: 30 KVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
++ NG+L + N+ +Q D+ Y CVA G
Sbjct: 77 RLLSNGSLCVSNLTQQRDEGYYQCVANNQYG 107
>sp|Q8WZ75|ROBO4_HUMAN Roundabout homolog 4 OS=Homo sapiens GN=ROBO4 PE=1 SV=1
Length = 1007
Score = 30.0 bits (66), Expect = 3.9, Method: Composition-based stats.
Identities = 15/57 (26%), Positives = 29/57 (50%), Gaps = 1/57 (1%)
Query: 15 SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
S++ +G+ L + + G+L++ E+ SD+ TY CVA + G+ V +
Sbjct: 170 SWWKDGKPLALQPGRHTVSGGSLLMARAEK-SDEGTYMCVATNSAGHRESRAARVSI 225
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.316 0.133 0.379
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 34,027,876
Number of Sequences: 539616
Number of extensions: 1105559
Number of successful extensions: 3308
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 70
Number of HSP's that attempted gapping in prelim test: 3227
Number of HSP's gapped (non-prelim): 159
length of query: 94
length of database: 191,569,459
effective HSP length: 64
effective length of query: 30
effective length of database: 157,034,035
effective search space: 4711021050
effective search space used: 4711021050
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)