Query psy14473
Match_columns 94
No_of_seqs 164 out of 1340
Neff 9.8
Searched_HMMs 46136
Date Fri Aug 16 20:44:38 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14473.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14473hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 cd05852 Ig5_Contactin-1 Fifth 99.7 1.7E-16 3.7E-21 83.4 8.0 64 4-71 10-73 (73)
2 cd05762 Ig8_MLCK Eighth immuno 99.7 6.1E-16 1.3E-20 85.5 9.1 72 3-78 23-97 (98)
3 cd05854 Ig6_Contactin-2 Sixth 99.7 8E-16 1.7E-20 83.0 9.0 70 4-75 9-85 (85)
4 cd05745 Ig3_Peroxidasin Third 99.7 5E-16 1.1E-20 81.7 7.9 64 4-71 11-74 (74)
5 cd05738 Ig2_RPTP_IIa_LAR_like 99.7 6.8E-16 1.5E-20 81.2 8.3 65 4-71 7-73 (74)
6 cd04970 Ig6_Contactin_like Six 99.7 4.7E-16 1E-20 83.7 7.9 70 4-75 9-85 (85)
7 cd05723 Ig4_Neogenin Fourth im 99.7 7.7E-16 1.7E-20 80.4 8.3 64 4-71 8-71 (71)
8 cd05853 Ig6_Contactin-4 Sixth 99.7 9.4E-16 2E-20 82.7 8.7 69 5-75 10-85 (85)
9 cd05892 Ig_Myotilin_C C-termin 99.7 9E-16 1.9E-20 81.1 7.9 65 3-71 6-75 (75)
10 cd05746 Ig4_Peroxidasin Fourth 99.6 2.3E-15 5E-20 78.2 8.0 63 3-69 6-68 (69)
11 cd05855 Ig_TrkB_d5 Fifth domai 99.6 1.9E-15 4E-20 80.6 7.4 64 3-70 6-77 (79)
12 cd05893 Ig_Palladin_C C-termin 99.6 2.1E-15 4.6E-20 79.7 7.5 65 3-71 6-75 (75)
13 cd04976 Ig2_VEGFR Second immun 99.6 3.3E-15 7.1E-20 78.1 8.1 65 3-72 6-70 (71)
14 cd05863 Ig2_VEGFR-3 Second imm 99.6 2.5E-15 5.3E-20 77.8 7.4 61 3-72 6-66 (67)
15 cd05876 Ig3_L1-CAM Third immun 99.6 3.4E-15 7.4E-20 77.9 7.6 64 4-71 7-70 (71)
16 cd04969 Ig5_Contactin_like Fif 99.6 4.6E-15 1E-19 77.7 8.0 64 4-71 10-73 (73)
17 cd05864 Ig2_VEGFR-2 Second imm 99.6 4.9E-15 1.1E-19 77.3 7.4 63 3-71 6-68 (70)
18 cd05744 Ig_Myotilin_C_like Imm 99.6 8.6E-15 1.9E-19 77.2 8.3 65 3-71 6-75 (75)
19 cd04971 Ig_TrKABC_d5 Fifth dom 99.6 6E-15 1.3E-19 79.0 7.8 64 3-70 6-79 (81)
20 cd05859 Ig4_PDGFR-alpha Fourth 99.6 8.3E-15 1.8E-19 81.4 8.2 66 3-72 26-100 (101)
21 cd05748 Ig_Titin_like Immunogl 99.6 1.8E-14 4E-19 75.6 8.6 64 3-70 7-73 (74)
22 cd05849 Ig1_Contactin-1 First 99.6 2.1E-14 4.6E-19 78.7 8.6 64 4-70 28-92 (93)
23 cd05735 Ig8_DSCAM Eight immuno 99.6 2.4E-14 5.3E-19 77.7 8.6 71 4-78 10-88 (88)
24 cd04975 Ig4_SCFR_like Fourth i 99.6 1.7E-14 3.7E-19 80.2 7.8 66 4-73 27-101 (101)
25 cd07702 Ig2_VEGFR-1 Second imm 99.6 2.4E-14 5.2E-19 75.1 7.8 55 3-61 6-61 (72)
26 cd05734 Ig7_DSCAM Seventh immu 99.6 2.1E-14 4.5E-19 76.3 7.4 65 4-71 7-79 (79)
27 cd05868 Ig4_NrCAM Fourth immun 99.6 4.4E-14 9.5E-19 74.7 8.0 64 4-71 10-75 (76)
28 cd05894 Ig_C5_MyBP-C C5 immuno 99.6 3.9E-14 8.5E-19 76.6 7.8 66 2-71 17-86 (86)
29 cd05867 Ig4_L1-CAM_like Fourth 99.6 7.7E-14 1.7E-18 73.6 8.7 64 4-71 10-75 (76)
30 cd05848 Ig1_Contactin-5 First 99.6 4.4E-14 9.6E-19 77.5 8.0 64 4-69 28-92 (94)
31 cd05725 Ig3_Robo Third immunog 99.6 4.7E-14 1E-18 73.1 7.6 63 4-71 7-69 (69)
32 cd05731 Ig3_L1-CAM_like Third 99.6 4.7E-14 1E-18 73.2 7.5 64 4-71 7-70 (71)
33 cd05724 Ig2_Robo Second immuno 99.5 9.2E-14 2E-18 74.6 8.5 63 5-70 22-85 (86)
34 cd05726 Ig4_Robo Fhird immunog 99.5 1.2E-13 2.5E-18 75.1 8.9 68 4-75 10-85 (90)
35 cd05760 Ig2_PTK7 Second immuno 99.5 1.6E-13 3.4E-18 72.7 8.8 67 3-72 6-75 (77)
36 cd05866 Ig1_NCAM-2 First immun 99.5 1E-13 2.2E-18 75.9 8.3 64 4-71 24-91 (92)
37 cd05730 Ig3_NCAM-1_like Third 99.5 1.8E-13 3.9E-18 74.9 9.0 66 4-73 27-94 (95)
38 cd05875 Ig6_hNeurofascin_like 99.5 2E-13 4.4E-18 72.3 8.8 64 4-69 7-76 (77)
39 cd05763 Ig_1 Subgroup of the i 99.5 1.3E-13 2.8E-18 72.5 7.9 65 3-71 6-74 (75)
40 cd04978 Ig4_L1-NrCAM_like Four 99.5 1.6E-13 3.5E-18 72.1 8.2 65 3-71 9-75 (76)
41 cd05764 Ig_2 Subgroup of the i 99.5 1.7E-13 3.7E-18 71.8 8.2 63 4-70 10-73 (74)
42 cd05851 Ig3_Contactin-1 Third 99.5 9.9E-14 2.2E-18 75.2 7.4 63 4-71 25-87 (88)
43 cd05850 Ig1_Contactin-2 First 99.5 2.2E-13 4.7E-18 74.7 8.6 63 4-69 28-92 (94)
44 cd05733 Ig6_L1-CAM_like Sixth 99.5 1.3E-13 2.7E-18 73.1 7.4 64 4-69 7-76 (77)
45 cd05722 Ig1_Neogenin First imm 99.5 2.5E-13 5.4E-18 74.4 8.5 66 4-71 23-95 (95)
46 cd05737 Ig_Myomesin_like_C C-t 99.5 1.4E-13 3.1E-18 75.1 7.5 64 3-70 24-91 (92)
47 cd05874 Ig6_NrCAM Sixth immuno 99.5 2.9E-13 6.3E-18 71.7 8.2 65 3-69 6-76 (77)
48 cd05740 Ig_CEACAM_D4 Fourth im 99.5 3.7E-13 8.1E-18 73.4 8.7 63 4-71 27-90 (91)
49 cd05728 Ig4_Contactin-2-like F 99.5 2.4E-13 5.2E-18 73.2 7.8 63 4-71 23-85 (85)
50 cd05865 Ig1_NCAM-1 First immun 99.5 2.3E-13 4.9E-18 75.0 7.5 65 4-71 24-95 (96)
51 cd05857 Ig2_FGFR Second immuno 99.5 6.3E-13 1.4E-17 71.2 8.3 65 3-71 17-85 (85)
52 cd04968 Ig3_Contactin_like Thi 99.5 7.1E-13 1.5E-17 71.6 7.8 63 4-71 25-87 (88)
53 cd05747 Ig5_Titin_like M5, fif 99.5 9E-13 1.9E-17 71.8 8.2 63 3-69 26-91 (92)
54 cd07693 Ig1_Robo First immunog 99.5 1.3E-12 2.8E-17 71.5 8.5 65 4-71 25-99 (100)
55 cd05736 Ig2_Follistatin_like S 99.4 2E-12 4.3E-17 68.1 8.7 65 4-72 7-74 (76)
56 cd05743 Ig_Perlecan_D2_like Im 99.4 8.5E-13 1.8E-17 69.9 6.8 56 4-62 10-68 (78)
57 cd05773 Ig8_hNephrin_like Eigh 99.4 1.9E-12 4.1E-17 72.8 8.5 69 4-75 32-108 (109)
58 cd04972 Ig_TrkABC_d4 Fourth do 99.4 1.5E-12 3.2E-17 70.7 7.6 64 4-71 24-90 (90)
59 cd05757 Ig2_IL1R_like Second i 99.4 5.9E-12 1.3E-16 68.9 9.4 50 8-61 28-77 (92)
60 cd05869 Ig5_NCAM-1 Fifth immun 99.4 2.9E-12 6.4E-17 70.5 7.7 64 4-71 26-97 (97)
61 cd05891 Ig_M-protein_C C-termi 99.4 3.3E-12 7.1E-17 69.8 7.8 63 4-70 25-91 (92)
62 cd04977 Ig1_NCAM-1_like First 99.4 2.8E-12 6E-17 70.0 7.3 63 4-70 24-91 (92)
63 cd04967 Ig1_Contactin First Ig 99.4 3.7E-12 8E-17 69.3 7.4 58 4-64 28-87 (91)
64 cd05739 Ig3_RPTP_IIa_LAR_like 99.4 5.8E-12 1.3E-16 65.4 7.7 59 4-69 10-68 (69)
65 cd05856 Ig2_FGFRL1-like Second 99.4 2.6E-12 5.7E-17 68.1 6.4 63 4-70 18-81 (82)
66 cd05756 Ig1_IL1R_like First im 99.4 6.1E-12 1.3E-16 69.0 7.3 61 7-71 31-94 (94)
67 PF07679 I-set: Immunoglobulin 99.4 3.7E-12 8E-17 68.7 6.3 64 4-71 24-90 (90)
68 cd05750 Ig_Pro_neuregulin Immu 99.4 5.6E-12 1.2E-16 65.9 6.5 56 4-62 7-69 (75)
69 cd05870 Ig5_NCAM-2 Fifth immun 99.3 1.2E-11 2.5E-16 68.2 7.5 64 4-71 25-98 (98)
70 cd04974 Ig3_FGFR Third immunog 99.3 1.1E-11 2.4E-16 67.4 7.0 64 4-71 10-89 (90)
71 cd04973 Ig1_FGFR First immunog 99.3 1.1E-11 2.4E-16 65.8 6.8 53 14-69 25-77 (79)
72 cd05732 Ig5_NCAM-1_like Fifth 99.3 1.3E-11 2.8E-16 67.5 7.3 64 4-71 25-96 (96)
73 cd05765 Ig_3 Subgroup of the i 99.3 2.5E-11 5.4E-16 64.3 8.1 65 3-71 9-81 (81)
74 cd05897 Ig2_IL1R2_like Second 99.3 2.3E-11 5E-16 66.9 8.0 61 8-71 28-93 (95)
75 KOG3513|consensus 99.3 6.5E-12 1.4E-16 90.9 7.2 68 4-75 450-517 (1051)
76 cd05858 Ig3_FGFR-2 Third immun 99.3 1.6E-11 3.4E-16 66.7 6.9 64 4-71 10-89 (90)
77 cd05727 Ig2_Contactin-2-like S 99.3 1.9E-11 4.1E-16 67.3 5.4 56 3-61 27-85 (96)
78 cd05749 Ig2_Tyro3_like Second 99.3 3.9E-11 8.5E-16 64.2 6.4 58 4-69 22-80 (81)
79 cd05758 Ig5_KIRREL3-like Fifth 99.2 1.2E-10 2.6E-15 64.1 7.6 63 4-69 25-97 (98)
80 cd05774 Ig_CEACAM_D1 First imm 99.2 1.8E-10 4E-15 64.4 8.0 67 3-70 19-104 (105)
81 cd05895 Ig_Pro_neuregulin-1 Im 99.2 8.2E-11 1.8E-15 61.9 5.9 54 6-62 10-70 (76)
82 cd04979 Ig_Semaphorin_C Immuno 99.2 3.4E-10 7.4E-15 61.2 7.6 61 8-72 23-87 (89)
83 KOG4222|consensus 99.1 1.1E-10 2.4E-15 84.9 6.3 82 3-87 155-240 (1281)
84 cd05873 Ig_Sema4D_like Immunog 99.1 4.8E-10 1E-14 60.7 6.9 48 8-59 23-71 (87)
85 KOG3513|consensus 99.1 6.7E-10 1.5E-14 80.8 9.4 66 4-74 355-423 (1051)
86 PHA02826 IL-1 receptor-like pr 99.1 7.3E-10 1.6E-14 69.5 8.3 51 6-59 160-211 (227)
87 cd05729 Ig2_FGFR_like Second i 99.1 1.3E-09 2.8E-14 57.9 7.9 63 4-70 18-84 (85)
88 cd05845 Ig2_L1-CAM_like Second 99.1 3.1E-10 6.8E-15 62.3 5.4 54 3-59 27-82 (95)
89 smart00408 IGc2 Immunoglobulin 99.1 2.3E-09 5.1E-14 53.2 7.3 53 4-60 11-63 (63)
90 cd05742 Ig1_VEGFR_like First i 99.0 1.5E-09 3.3E-14 58.0 6.8 66 4-71 10-83 (84)
91 cd05861 Ig1_PDGFR-alphabeta Fr 99.0 8.4E-09 1.8E-13 55.3 7.6 66 4-72 10-83 (84)
92 KOG4194|consensus 99.0 2.1E-09 4.5E-14 74.9 6.2 81 4-88 636-722 (873)
93 KOG4221|consensus 99.0 3.9E-09 8.5E-14 77.5 7.7 68 4-75 261-329 (1381)
94 cd05871 Ig_Semaphorin_classIII 99.0 1.2E-08 2.6E-13 55.6 8.0 63 6-73 21-90 (91)
95 cd05753 Ig2_FcgammaR_like Seco 98.9 2.6E-09 5.6E-14 57.3 5.0 53 13-71 31-83 (83)
96 cd05885 Ig2_Necl-4 Second immu 98.9 1.2E-08 2.7E-13 54.3 6.7 54 5-61 10-68 (80)
97 cd05752 Ig1_FcgammaR_like Frst 98.9 5.7E-09 1.2E-13 55.4 5.4 55 4-71 24-78 (78)
98 PHA02785 IL-beta-binding prote 98.9 2E-08 4.3E-13 66.0 8.9 62 5-73 56-118 (326)
99 cd05754 Ig3_Perlecan_like Thir 98.9 8.4E-09 1.8E-13 55.2 6.0 50 7-62 29-78 (85)
100 cd05862 Ig1_VEGFR First immuno 98.9 1.6E-08 3.5E-13 54.5 6.7 66 5-72 11-85 (86)
101 cd05896 Ig1_IL1RAPL-1_like Fir 98.9 2.2E-08 4.8E-13 55.7 7.0 56 13-70 42-103 (104)
102 PHA02785 IL-beta-binding prote 98.8 2.6E-08 5.7E-13 65.5 8.1 62 6-72 152-216 (326)
103 cd05882 Ig1_Necl-1 First (N-te 98.8 2.2E-08 4.7E-13 55.0 6.6 52 4-58 21-84 (95)
104 cd07701 Ig1_Necl-3 First (N-te 98.8 2.2E-08 4.8E-13 54.9 6.0 63 4-71 21-95 (95)
105 cd05872 Ig_Sema4B_like Immunog 98.8 9.3E-08 2E-12 51.5 7.6 44 9-56 24-67 (85)
106 cd05741 Ig_CEACAM_D1_like Firs 98.8 1.1E-07 2.3E-12 51.4 8.0 43 27-70 49-91 (92)
107 PF13895 Ig_2: Immunoglobulin 98.8 2.9E-08 6.3E-13 51.8 5.3 57 5-71 24-80 (80)
108 smart00409 IG Immunoglobulin. 98.7 2.5E-07 5.4E-12 48.1 8.6 57 13-71 25-85 (86)
109 smart00410 IG_like Immunoglobu 98.7 2.5E-07 5.4E-12 48.1 8.6 57 13-71 25-85 (86)
110 PHA02826 IL-1 receptor-like pr 98.7 1.6E-07 3.4E-12 59.1 7.9 62 11-74 62-135 (227)
111 KOG4221|consensus 98.7 9.7E-08 2.1E-12 70.5 7.1 67 4-73 164-230 (1381)
112 cd05759 Ig2_KIRREL3-like Secon 98.6 3.4E-07 7.4E-12 48.6 7.1 63 5-70 9-81 (82)
113 cd05898 Ig5_KIRREL3 Fifth immu 98.6 7.5E-07 1.6E-11 49.2 7.5 62 5-69 26-97 (98)
114 PF00047 ig: Immunoglobulin do 98.5 5E-08 1.1E-12 49.3 2.1 42 13-55 18-64 (64)
115 cd05717 Ig1_Necl-1-3_like Firs 98.5 1E-06 2.2E-11 48.0 6.9 61 5-70 22-94 (95)
116 cd05713 Ig_MOG_like Immunoglob 98.5 1.3E-06 2.8E-11 47.9 7.1 35 35-71 65-99 (100)
117 cd05718 Ig1_PVR_like First imm 98.4 2.5E-06 5.4E-11 46.5 7.1 36 34-71 61-97 (98)
118 cd05860 Ig4_SCFR Fourth immuno 98.4 3.2E-06 6.9E-11 46.9 7.3 65 4-72 27-100 (101)
119 cd05879 Ig_P0 Immunoglobulin ( 98.4 3.1E-06 6.7E-11 48.1 7.2 27 33-60 78-104 (116)
120 cd05886 Ig1_Nectin-1_like Firs 98.4 2.1E-06 4.4E-11 47.5 5.7 36 34-71 62-98 (99)
121 cd05883 Ig2_Necl-2 Second immu 98.3 5.6E-06 1.2E-10 44.3 6.5 66 5-73 10-81 (82)
122 cd05751 Ig1_LILRB1_like First 98.2 3E-06 6.5E-11 46.0 4.7 58 13-71 31-90 (91)
123 cd05888 Ig1_Nectin-4_like Frst 98.2 5E-06 1.1E-10 45.9 5.5 36 34-71 63-99 (100)
124 cd05775 Ig_SLAM-CD84_like_N N- 98.2 6.5E-06 1.4E-10 45.2 5.7 37 34-71 60-96 (97)
125 KOG4222|consensus 98.2 2.4E-06 5.1E-11 63.2 4.6 67 4-75 249-316 (1281)
126 cd05887 Ig1_Nectin-3_like Firs 98.2 9.8E-06 2.1E-10 44.6 5.7 36 34-71 59-95 (96)
127 cd05900 Ig_Aggrecan Immunoglob 98.1 3.5E-05 7.5E-10 43.6 7.7 37 34-72 73-109 (112)
128 cd05714 Ig_CSPGs_LP Immunoglob 98.1 9.1E-06 2E-10 45.1 5.3 37 34-72 67-103 (106)
129 cd05771 IgC_Tapasin_R Tapasin- 98.1 6E-06 1.3E-10 48.0 4.7 38 36-75 2-39 (139)
130 cd07690 Ig1_CD4 First immunogl 98.1 8.6E-06 1.9E-10 44.7 4.7 24 36-60 66-89 (94)
131 PF13927 Ig_3: Immunoglobulin 98.1 8.7E-07 1.9E-11 45.4 0.7 24 33-57 52-75 (75)
132 cd05901 Ig_Versican Immunoglob 98.1 0.0001 2.2E-09 42.0 9.2 37 34-72 78-114 (117)
133 cd05877 Ig_LP_like Immunoglobu 98.0 1.7E-05 3.7E-10 43.9 5.0 36 35-72 68-103 (106)
134 cd05761 Ig2_Necl-1-4_like Seco 98.0 7.9E-05 1.7E-09 39.6 7.1 54 5-61 10-70 (82)
135 cd05902 Ig_Neurocan Immunoglob 98.0 5.8E-05 1.2E-09 42.5 6.6 37 34-72 71-107 (110)
136 cd07705 Ig2_Necl-1 Second immu 98.0 0.00016 3.4E-09 38.6 7.8 52 6-59 11-69 (83)
137 cd00098 IgC Immunoglobulin Con 97.9 3E-05 6.5E-10 41.9 4.7 56 4-60 22-86 (95)
138 PHA02633 hypothetical protein; 97.9 8.5E-05 1.8E-09 37.5 5.6 39 34-74 17-55 (63)
139 cd05846 Ig1_MRC-OX-2_like Firs 97.9 4.4E-05 9.6E-10 41.7 5.1 37 34-71 60-96 (97)
140 cd05881 Ig1_Necl-2 First (N-te 97.9 0.00016 3.5E-09 39.7 7.2 34 25-59 48-85 (95)
141 cd05878 Ig_Aggrecan_like Immun 97.9 5.3E-05 1.1E-09 42.5 5.2 38 34-73 71-108 (110)
142 cd05889 Ig1_DNAM-1_like First 97.8 0.00012 2.5E-09 40.3 5.5 33 34-68 59-92 (96)
143 cd05880 Ig_EVA1 Immunoglobulin 97.8 5.6E-05 1.2E-09 42.7 4.2 26 34-60 78-103 (115)
144 KOG4194|consensus 97.7 6.8E-05 1.5E-09 53.2 4.9 67 5-75 731-799 (873)
145 cd05755 Ig2_ICAM-1_like Second 97.7 0.0002 4.3E-09 39.7 5.4 55 5-61 27-87 (100)
146 PHA03376 BARF1; Provisional 97.7 0.00049 1.1E-08 42.4 7.4 24 35-59 87-110 (221)
147 cd05715 Ig_P0-like Immunoglobu 97.7 0.0001 2.2E-09 41.6 4.3 25 35-60 80-104 (116)
148 cd04983 IgV_TCR_alpha_like Imm 97.7 0.00015 3.2E-09 40.2 4.8 24 35-59 70-93 (109)
149 cd05884 Ig2_Necl-3 Second immu 97.6 0.00074 1.6E-08 36.1 6.9 51 6-59 11-69 (83)
150 cd00099 IgV Immunoglobulin var 97.6 0.00014 3.1E-09 39.8 4.2 24 36-60 68-91 (105)
151 KOG1480|consensus 97.6 3.6E-05 7.8E-10 55.3 2.1 68 3-73 153-220 (909)
152 cd00096 Ig Immunoglobulin doma 97.6 0.00032 6.9E-09 34.3 5.0 51 6-59 9-66 (74)
153 PF07686 V-set: Immunoglobulin 97.6 0.00015 3.3E-09 39.8 4.1 35 36-71 80-114 (114)
154 PF07354 Sp38: Zona-pellucida- 97.6 0.00022 4.8E-09 45.6 5.0 47 8-57 11-58 (271)
155 PHA02987 Ig domain OX-2-like p 97.4 0.0012 2.7E-08 40.4 6.7 41 33-74 83-124 (189)
156 cd07698 IgC_MHC_I_alpha3 Class 97.3 0.003 6.5E-08 34.2 6.7 55 4-59 23-83 (93)
157 cd07691 Ig_CD3_gamma_delta Imm 97.3 0.00085 1.8E-08 34.6 4.1 36 14-57 19-54 (69)
158 smart00407 IGc1 Immunoglobulin 97.2 0.0029 6.2E-08 32.9 6.0 54 5-59 9-71 (75)
159 cd05766 IgC_MHC_II_beta Class 97.2 0.0047 1E-07 33.7 6.8 55 4-59 23-83 (94)
160 cd05772 IgC_SIRP Signal-regula 97.1 0.0099 2.1E-07 33.5 8.0 53 5-59 31-92 (111)
161 cd05770 IgC_beta2m Class I maj 97.1 0.0016 3.4E-08 35.6 4.4 53 4-58 24-82 (93)
162 PF11465 Receptor_2B4: Natural 97.1 0.0042 9.1E-08 34.7 5.8 39 32-71 68-106 (108)
163 cd05711 Ig_FcalphaRI Immunoglo 96.9 0.0044 9.5E-08 33.7 5.1 43 13-56 30-75 (94)
164 cd05767 IgC_MHC_II_alpha Class 96.9 0.0077 1.7E-07 32.9 5.9 55 4-59 24-84 (94)
165 cd04982 IgV_TCR_gamma Immunogl 96.9 0.0026 5.6E-08 35.6 4.2 22 35-57 77-98 (116)
166 cd04984 IgV_L_lambda Immunoglo 96.8 0.0027 5.9E-08 34.6 3.7 22 36-58 64-85 (98)
167 cd05719 Ig2_PVR_like Second im 96.7 0.0098 2.1E-07 32.6 5.4 51 5-59 26-82 (95)
168 cd04980 IgV_L_kappa Immunoglob 96.6 0.003 6.6E-08 34.9 3.0 22 36-58 72-93 (106)
169 cd05771 IgC_Tapasin_R Tapasin- 96.6 0.007 1.5E-07 35.0 4.6 54 5-59 63-131 (139)
170 cd07694 Ig2_CD4 Second immunog 96.5 0.039 8.5E-07 29.9 7.0 46 7-58 28-73 (88)
171 cd05716 Ig_pIgR Immunoglobulin 96.5 0.0048 1E-07 33.5 3.4 23 36-59 65-87 (98)
172 PF07654 C1-set: Immunoglobuli 96.5 0.019 4.1E-07 30.3 5.5 55 4-59 17-77 (83)
173 PF08204 V-set_CD47: CD47 immu 96.4 0.014 3.1E-07 33.8 5.2 62 7-71 42-119 (130)
174 cd05847 IgC_CH2_IgE CH2 domain 96.4 0.015 3.2E-07 31.8 5.0 56 4-59 23-86 (94)
175 cd05899 IgV_TCR_beta Immunoglo 96.3 0.004 8.7E-08 34.6 2.5 23 35-58 72-94 (110)
176 smart00406 IGv Immunoglobulin 96.3 0.002 4.3E-08 33.3 1.1 19 35-54 62-80 (81)
177 cd07700 IgV_CD8_beta Immunoglo 96.3 0.006 1.3E-07 33.8 3.0 21 36-57 73-93 (107)
178 cd07699 IgC_L Immunoglobulin C 96.2 0.028 6E-07 31.0 5.5 55 5-59 27-89 (100)
179 cd05768 IgC_CH4 CH4 domain (fo 96.2 0.019 4.2E-07 31.7 4.7 56 4-59 25-91 (102)
180 PF08205 C2-set_2: CD80-like C 96.1 0.032 6.9E-07 29.6 5.2 52 5-59 25-84 (89)
181 cd07697 IgC_TCR_gamma T cell r 96.0 0.096 2.1E-06 28.7 6.9 54 4-58 25-84 (96)
182 cd07703 Ig2_Nectin-2_like Seco 95.9 0.028 6E-07 30.8 4.5 51 5-59 26-82 (95)
183 cd05712 Ig_Siglec_N Immunoglob 95.8 0.013 2.8E-07 33.2 2.9 23 35-58 80-102 (119)
184 cd05720 Ig_CD8_alpha Immunoglo 95.7 0.0072 1.6E-07 33.4 1.8 21 36-57 70-90 (104)
185 cd07692 Ig_CD3_epsilon Immunog 95.6 0.033 7.2E-07 28.5 3.7 36 14-58 21-56 (65)
186 cd07706 IgV_TCR_delta Immunogl 95.6 0.01 2.2E-07 33.3 1.9 21 36-57 73-93 (116)
187 cd05769 IgC_TCR_beta T cell re 95.0 0.082 1.8E-06 30.0 4.4 55 5-59 28-92 (115)
188 cd04986 IgC_CH2 CH2 domain (se 94.9 0.087 1.9E-06 29.2 4.2 54 5-59 29-89 (99)
189 PHA03042 CD47-like protein; Pr 94.8 0.21 4.5E-06 32.5 6.3 57 10-72 49-105 (286)
190 cd07696 IgC_CH3 CH3 domain (th 94.5 0.29 6.3E-06 26.7 5.8 56 4-59 23-86 (96)
191 KOG4597|consensus 93.9 0.12 2.6E-06 36.1 4.1 65 3-71 219-291 (560)
192 cd04985 IgC_CH1 CH1 domain (fi 93.9 0.2 4.4E-06 27.3 4.4 54 4-59 25-87 (95)
193 cd04981 IgV_H Immunoglobulin ( 93.8 0.05 1.1E-06 30.7 1.9 21 36-57 77-97 (117)
194 cd07704 Ig2_Nectin-3-4_like Se 93.4 0.33 7.1E-06 26.8 4.6 51 5-59 28-84 (97)
195 KOG3515|consensus 93.2 0.096 2.1E-06 38.5 2.9 63 8-75 36-98 (741)
196 cd07689 Ig2_VCAM-1 Second immu 92.0 0.8 1.7E-05 25.4 4.9 52 6-59 27-86 (99)
197 KOG3515|consensus 90.2 0.88 1.9E-05 33.7 5.0 71 2-75 423-496 (741)
198 PHA02914 Immunoglobulin-like d 87.4 2 4.3E-05 29.8 4.9 37 36-75 82-118 (500)
199 PHA03282 envelope glycoprotein 85.1 2.8 6.1E-05 29.6 4.8 23 33-56 122-144 (540)
200 PHA03286 envelope glycoprotein 82.5 10 0.00022 26.8 6.6 37 35-72 127-163 (492)
201 PF02480 Herpes_gE: Alphaherpe 81.9 0.44 9.4E-06 33.2 0.0 40 33-73 87-126 (439)
202 PHA03283 envelope glycoprotein 81.1 7.7 0.00017 27.8 5.7 39 35-75 134-172 (542)
203 PHA02865 MHC-like TNF binding 80.8 5 0.00011 27.2 4.6 15 5-19 224-238 (338)
204 KOG3611|consensus 77.2 12 0.00027 28.0 6.0 41 33-74 610-650 (737)
205 cd05721 IgV_CTLA-4 Immunoglobu 76.7 2.4 5.1E-05 24.2 1.9 19 36-55 75-93 (115)
206 PF05790 C2-set: Immunoglobuli 74.9 10 0.00023 20.0 6.7 23 36-59 44-67 (80)
207 PHA03189 UL14 tegument protein 72.1 13 0.00029 25.0 4.7 17 45-61 142-158 (348)
208 PF11049 KSHV_K1: Glycoprotein 70.1 7.6 0.00016 20.0 2.6 47 14-75 13-59 (71)
209 PHA02982 hypothetical protein; 69.2 12 0.00025 24.0 3.8 25 34-59 99-123 (251)
210 PF02124 Marek_A: Marek's dise 68.9 27 0.00058 22.2 6.1 49 8-56 102-158 (211)
211 PHA03281 envelope glycoprotein 60.7 36 0.00077 24.9 5.2 40 34-74 297-336 (642)
212 PHA03282 envelope glycoprotein 57.7 13 0.00027 26.6 2.7 23 36-59 334-357 (540)
213 COG5475 Uncharacterized small 54.1 27 0.00059 17.3 3.0 23 36-61 19-41 (60)
214 PHA03286 envelope glycoprotein 53.0 17 0.00038 25.7 2.7 23 36-59 308-331 (492)
215 PHA03290 envelope glycoprotein 52.6 59 0.0013 22.3 5.0 38 36-75 130-167 (357)
216 PF02480 Herpes_gE: Alphaherpe 50.2 14 0.00029 26.0 2.0 23 35-58 269-292 (439)
217 PF01688 Herpes_gI: Alphaherpe 48.3 61 0.0013 19.7 4.7 22 36-58 125-146 (161)
218 PHA02914 Immunoglobulin-like d 47.6 16 0.00035 25.6 2.0 24 34-58 345-368 (500)
219 PHA03283 envelope glycoprotein 43.2 31 0.00066 25.0 2.8 24 35-59 315-339 (542)
220 PHA03240 envelope glycoprotein 40.8 31 0.00067 22.1 2.3 20 33-53 103-122 (258)
221 PF06832 BiPBP_C: Penicillin-B 40.8 57 0.0012 17.1 5.3 39 15-62 46-84 (89)
222 PHA03292 envelope glycoprotein 39.5 1.1E+02 0.0023 21.5 4.8 23 36-59 129-151 (413)
223 PF11327 DUF3129: Protein of u 39.1 86 0.0019 19.4 4.0 25 32-57 88-114 (184)
224 COG4953 PbpC Membrane carboxyp 37.7 1.1E+02 0.0023 23.3 4.8 42 14-64 685-726 (733)
225 PRK09919 anti-adapter protein 37.0 77 0.0017 18.1 3.3 18 14-31 30-47 (114)
226 PHA03281 envelope glycoprotein 37.0 43 0.00092 24.6 2.7 23 36-59 476-499 (642)
227 PF02440 Adeno_E3_CR1: Adenovi 36.6 62 0.0013 16.4 3.1 11 6-18 12-22 (63)
228 PHA03289 envelope glycoprotein 36.6 1.4E+02 0.003 20.5 4.9 36 36-73 123-158 (352)
229 PHA03291 envelope glycoprotein 32.3 1.7E+02 0.0038 20.3 4.9 35 36-72 130-164 (401)
230 PF11781 RRN7: RNA polymerase 31.2 25 0.00055 15.6 0.6 10 45-54 20-29 (36)
231 PF06214 SLAM: Signaling lymph 31.0 73 0.0016 18.3 2.6 27 28-55 95-122 (126)
232 PHA03271 envelope glycoprotein 29.5 52 0.0011 23.3 2.2 18 7-24 273-290 (490)
233 cd05890 Ig2_Nectin-1_like Seco 27.6 1.2E+02 0.0026 16.9 3.1 49 4-58 30-86 (98)
234 cd01617 DCX Ubiquitin-like dom 27.5 67 0.0015 16.7 2.0 25 33-57 52-76 (80)
235 PHA03269 envelope glycoprotein 26.3 2.7E+02 0.0058 20.5 6.2 39 36-75 290-330 (566)
236 COG3151 Uncharacterized protei 25.1 63 0.0014 19.1 1.7 19 2-20 71-89 (147)
237 PF08329 ChitinaseA_N: Chitina 24.7 1.6E+02 0.0034 17.3 5.8 42 46-87 80-126 (133)
238 PF03607 DCX: Doublecortin; I 24.3 1E+02 0.0022 15.0 3.0 22 33-55 34-55 (60)
239 KOG0200|consensus 22.8 90 0.002 22.9 2.5 23 34-57 12-34 (609)
240 PF06491 Disulph_isomer: Disul 22.0 1.1E+02 0.0025 18.0 2.4 19 5-23 90-108 (136)
241 PF12690 BsuPI: Intracellular 21.2 1.4E+02 0.0031 15.7 2.5 7 48-54 75-81 (82)
242 KOG3757|consensus 20.0 66 0.0014 21.7 1.2 24 34-57 81-104 (301)
No 1
>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.70 E-value=1.7e-16 Score=83.43 Aligned_cols=64 Identities=23% Similarity=0.332 Sum_probs=53.8
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ +|+|++..+....++.+..+++|.|.++. ..|+|.|+|.|.|..|.. ..+..|+|
T Consensus 10 ~~g~P~p~v--~W~k~~~~l~~~~r~~~~~~g~L~I~~v~-~~D~G~Y~C~A~N~~G~~-~~~~~l~~ 73 (73)
T cd05852 10 PKAAPKPKF--SWSKGTELLVNNSRISIWDDGSLEILNIT-KLDEGSYTCFAENNRGKA-NSTGVLSV 73 (73)
T ss_pred cceeCCCEE--EEEeCCEecccCCCEEEcCCCEEEECcCC-hhHCEEEEEEEECCCCce-eEEEEEEC
Confidence 568998877 89999998877778888888999999998 599999999999999874 44666653
No 2
>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has
Probab=99.68 E-value=6.1e-16 Score=85.54 Aligned_cols=72 Identities=13% Similarity=0.140 Sum_probs=59.2
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCcEEEc---cCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecCCCC
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKVF---PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~~~~~---~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p~~p 78 (94)
.+.|.|.+.+ .|+|+++.+....++.+. ....|.|.++. .+|+|.|+|.+.|..|.. ..++.|.|..+|.+|
T Consensus 23 ~~~G~p~p~v--~W~kdg~~l~~~~~~~~~~~~~~s~L~I~~~~-~~D~G~Ytc~a~N~~G~~-~~~~~l~V~~~P~pP 97 (98)
T cd05762 23 KVTGTQPITC--TWMKFRKQIQEGEGIKIENTENSSKLTITEGQ-QEHCGCYTLEVENKLGSR-QAQVNLTVVDKPDPP 97 (98)
T ss_pred EEcccCCCce--EEEECCEEecCCCcEEEEecCCeeEEEECCCC-hhhCEEEEEEEEcCCCce-eEEEEEEEecCCCCC
Confidence 5789998887 899999999766666553 24579999998 599999999999999874 568999999888554
No 3
>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.68 E-value=8e-16 Score=83.03 Aligned_cols=70 Identities=19% Similarity=0.207 Sum_probs=55.3
Q ss_pred ccccCCCCeEEEEeeCCEEcCCC---CcEEE---c-cCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPIN---RKQKV---F-PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~---~~~~~---~-~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
+.|.|.|.++++|+|++..+... .++.. . ..++|.|.+++ ..|+|.|+|.|.|..|. .++.+.|.|..||
T Consensus 9 a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~YtC~A~n~~g~-~~~~~~L~V~~~P 85 (85)
T cd05854 9 ASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQ-LSHAGTYTCTAQTVVDS-ASASATLVVRGPP 85 (85)
T ss_pred EecCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCC-hhhCeEEEEEEecCCCC-EEEEEEEEEECCC
Confidence 56899998777999999887532 23211 1 34689999998 69999999999999987 4668899998876
No 4
>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin. Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.68 E-value=5e-16 Score=81.67 Aligned_cols=64 Identities=27% Similarity=0.396 Sum_probs=53.4
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ +|+|++..+....+..+..+++|.|.++. .+|+|.|+|.|.|..|.. +..+.|.|
T Consensus 11 ~~g~P~p~i--~W~k~g~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~-~~~~~L~V 74 (74)
T cd05745 11 AQGYPQPVI--AWTKGGSQLSVDRRHLVLSSGTLRISRVA-LHDQGQYECQAVNIVGSQ-RTVAQLTV 74 (74)
T ss_pred CCEecCCEE--EEEECCEECCCCCCeEEccCCeEEEeeCC-HHhCEEEEEEEEeCCCce-eEEEEEeC
Confidence 679999988 89999999876666667778899999998 599999999999999874 55666653
No 5
>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.
Probab=99.68 E-value=6.8e-16 Score=81.22 Aligned_cols=65 Identities=26% Similarity=0.308 Sum_probs=54.2
Q ss_pred ccccCCCCeEEEEeeCCEEcC--CCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLP--INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~--~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ +|+|++..+. ...++....++.|.|.++. .+|+|.|+|.|.|..|...+..+.|.|
T Consensus 7 ~~G~P~p~v--~W~k~~~~~~~~~~~~~~~~~~g~L~i~~~~-~~D~G~Y~C~a~N~~G~~~s~~a~l~v 73 (74)
T cd05738 7 ASGNPDPEI--TWFKDFLPVDTTSNGRIKQLRSGALQIENSE-ESDQGKYECVATNSAGTRYSAPANLYV 73 (74)
T ss_pred EeEecCCEE--EEEECCEECccCCCCCEEEcCCcEEEECCCC-hhhCEEEEEEEECCCCceEcccEEEEE
Confidence 679999988 7999999886 3456666778899999997 699999999999999986666666665
No 6
>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin. Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.68 E-value=4.7e-16 Score=83.72 Aligned_cols=70 Identities=19% Similarity=0.234 Sum_probs=55.2
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCC---cE----EEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINR---KQ----KVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~---~~----~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
+.|.|.+.++++|+|++..+.... ++ ....+++|.|.+++ ..|+|.|+|.+.|..|. .+..+.|.|.+||
T Consensus 9 ~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~n~~g~-~~~~~~l~V~~pP 85 (85)
T cd04970 9 ASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQ-LKHAGKYTCTAQTVVDS-LSASADLIVRGPP 85 (85)
T ss_pred EecCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCC-HHhCeeeEEEEecCCCc-EEEEEEEEEECCC
Confidence 568899887779999999875332 11 11346789999997 69999999999999986 4668889998876
No 7
>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.67 E-value=7.7e-16 Score=80.40 Aligned_cols=64 Identities=14% Similarity=0.219 Sum_probs=53.0
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ +|+|++..+....++.+..++.|.|.++. .+|+|.|+|.|.|..|. ....+.|.|
T Consensus 8 ~~G~P~p~v--~W~k~g~~~~~~~~~~~~~~~~l~i~~v~-~~D~G~Y~C~A~N~~G~-~~~~~~L~V 71 (71)
T cd05723 8 VTGKPTPTV--KWVKNGDMVIPSDYFKIVKEHNLQVLGLV-KSDEGFYQCIAENDVGN-VQASAQLII 71 (71)
T ss_pred EEEeCCCEE--EEEECCeECCCCCCEEEEecCCEEEEcCC-cccCEEEEEEEEcCCCE-EEEEEEEEC
Confidence 679999988 89999998876667777677889999997 59999999999999987 455666653
No 8
>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.
Probab=99.67 E-value=9.4e-16 Score=82.75 Aligned_cols=69 Identities=13% Similarity=0.189 Sum_probs=54.0
Q ss_pred cccCCCCeEEEEeeCCEEcCC--C-CcEEE----ccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPI--N-RKQKV----FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~--~-~~~~~----~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
.+.|...++|.|+|+|+++.. . .++.. ..++.|.|.+++ ..|+|.|+|.|+|..+. .+.+..|.|.+||
T Consensus 10 ~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~-~~dsG~YtC~a~n~~~~-~~a~a~L~V~~pP 85 (85)
T cd05853 10 SHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQ-LKHAGKYVCMVQTSVDK-LSAAADLIVRGPP 85 (85)
T ss_pred ccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCC-HHHCEEEEEEEEcccCc-eEEEEEEEEecCC
Confidence 344555666799999999962 2 24434 245789999997 69999999999999976 5678999999887
No 9
>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin. Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.
Probab=99.67 E-value=9e-16 Score=81.10 Aligned_cols=65 Identities=18% Similarity=0.280 Sum_probs=50.5
Q ss_pred CccccCCCCeEEEEeeCCEEcCC-CCcEEEccC--C--eEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPI-NRKQKVFPN--G--TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~-~~~~~~~~~--~--~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.+.|.|.|.| +|+|++..+.. ..|+.+..+ + +|.|.++. .+|+|.|+|.|.|..|.. .....|.|
T Consensus 6 ~v~G~P~P~i--~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~-~~D~G~Y~C~A~N~~G~~-~~~a~L~V 75 (75)
T cd05892 6 QISAIPPPKI--FWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVN-KKDAGWYTVSAVNEAGVA-TCHARLDV 75 (75)
T ss_pred EEEecCCCeE--EEEECCEECcCCCCeEEEEEcCCCcEEEEECCCC-hhhCEEEEEEEEcCcCeE-EEEEEEeC
Confidence 3679999998 89999999864 356655432 3 79999997 699999999999999874 44566543
No 10
>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin. Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.
Probab=99.65 E-value=2.3e-15 Score=78.15 Aligned_cols=63 Identities=24% Similarity=0.367 Sum_probs=52.4
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEV 69 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l 69 (94)
.+.|.|.|.+ +|+|++..+....++.+..++.|.|.++. ..|+|.|+|.|.|..|.. +..+.|
T Consensus 6 ~~~g~P~p~i--~W~k~g~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~-~~~~~L 68 (69)
T cd05746 6 SAQGDPEPTI--TWNKDGVQVTESGKFHISPEGYLAIRDVG-VADQGRYECVARNTIGYA-SVSMVL 68 (69)
T ss_pred cceEeCCCEE--EEEECCEECCCCCCEEECCCCEEEECcCC-hhhCEEEEEEEECCCCcE-EEEEEe
Confidence 3679999987 89999998876677777778899999997 699999999999999874 445544
No 11
>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB. TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.
Probab=99.64 E-value=1.9e-15 Score=80.57 Aligned_cols=64 Identities=19% Similarity=0.208 Sum_probs=49.4
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCcEEE----c----cCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKV----F----PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~~~~----~----~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
.|.|+|.|.+ +|+|++++|..+.+... . ..+.|.|.++. ..|+|.|+|+|.|..|.. ++++.+.
T Consensus 6 ~v~G~P~Pti--~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~YtC~A~N~~G~~-~~~~~~~ 77 (79)
T cd05855 6 TVKGNPKPTL--QWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPT-HLNNGIYTLVAKNEYGED-EKNVSAH 77 (79)
T ss_pred EEeEeCCCce--EEEECCEECCCCcceeeeeEeecccceEEEEEECCCC-cccCEEEEEEEEcCCccc-ceEEEee
Confidence 3689999999 79999999976554321 1 23579999998 599999999999999874 4455543
No 12
>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin. Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.
Probab=99.64 E-value=2.1e-15 Score=79.66 Aligned_cols=65 Identities=20% Similarity=0.222 Sum_probs=50.6
Q ss_pred CccccCCCCeEEEEeeCCEEcCCC-CcEEEccCC----eEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPIN-RKQKVFPNG----TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~-~~~~~~~~~----~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.+.|.|.|.+ +|+|++..+..+ .++.+..++ .|.|.++. .+|+|.|+|.|.|..|.. +.+..|.|
T Consensus 6 ~v~G~P~P~v--~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~-~~~a~L~V 75 (75)
T cd05893 6 RVSGVPHPQI--FWKKENESLTHNTDRVSMHQDNCGYICLLIQGAT-KEDAGWYTVSAKNEAGIV-SCTARLDV 75 (75)
T ss_pred EEeEecCCEE--EEEECCEECCCCCCeEEEEEcCCCEEEEEECCCC-HHHCEEEEEEEEcCCCEE-EEEEEEeC
Confidence 3689999988 899999988643 455554332 69999997 699999999999999874 45666653
No 13
>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa
Probab=99.64 E-value=3.3e-15 Score=78.08 Aligned_cols=65 Identities=17% Similarity=0.284 Sum_probs=51.3
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
.+.|+|.|.+ .|+|++..+....+. ....+.|.|.++. .+|+|.|+|.+.|..|.. ...+.+.+.
T Consensus 6 ~v~g~P~p~v--~W~k~g~~l~~~~~~-~~~~~~L~I~~v~-~~D~G~YtC~a~N~~g~~-~~~~~~~~~ 70 (71)
T cd04976 6 KVKAYPPPEI--QWYKNGKLISEKNRT-KKSGHSLTIKDVT-EEDAGNYTVVLTNKQAKL-EKRLTFTLV 70 (71)
T ss_pred EEEEeCCCEE--EEEECCEECCCCCEE-EcCCCEEEECcCC-HHHCEEEEEEEEcCCccE-EEEEEEEEE
Confidence 4789999987 899999998765433 3456789999997 599999999999998763 445666554
No 14
>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.
Probab=99.64 E-value=2.5e-15 Score=77.81 Aligned_cols=61 Identities=15% Similarity=0.309 Sum_probs=48.4
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
.+.|+|.|.+ +|+|+|+.+... ...+.|.|.++. .+|+|.|+|.|.|..|. ..+++.+.+.
T Consensus 6 ~v~g~P~P~v--~W~kdg~~l~~~-----~~~~~L~i~~v~-~~D~G~YtC~a~N~~g~-~~~~~~~~l~ 66 (67)
T cd05863 6 KVAAYPPPEF--QWYKDGKLISGK-----HSQHSLQIKDVT-EASAGTYTLVLWNSAAG-LEKRISLELI 66 (67)
T ss_pred EEEEeCCCEE--EEEECCEECccc-----CCcCEEEECCCC-HHHCEEEEEEEEECCcc-EEEEEEEEEE
Confidence 4689999988 899999988522 134689999997 69999999999999986 3456666654
No 15
>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.63 E-value=3.4e-15 Score=77.93 Aligned_cols=64 Identities=28% Similarity=0.342 Sum_probs=50.6
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|+|.|.+ +|+|++..+..+.......++.|.|.++. .+|+|.|+|.|.|..|. .+..+.|.|
T Consensus 7 ~~G~P~P~v--~W~k~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05876 7 AEGLPTPEV--HWDRIDGPLSPNRTKKLNNNKTLQLDNVL-ESDDGEYVCTAENSEGS-ARHHYTVTV 70 (71)
T ss_pred eeEecCCeE--EEEECCcCCCCCceeEEcCCCEEEEcccC-HHhCEEEEEEEEcCCCe-EEEEEEEEE
Confidence 579999988 89999887754433334567899999998 59999999999999987 455666665
No 16
>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin. Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.63 E-value=4.6e-15 Score=77.74 Aligned_cols=64 Identities=27% Similarity=0.327 Sum_probs=53.3
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.+.+ +|+|++..+....++.+..+++|.|.++. ..|+|.|+|.+.|..|.. ..++.|.|
T Consensus 10 ~~g~P~p~v--~W~k~~~~~~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~~-~~~~~l~V 73 (73)
T cd04969 10 PKAAPKPTI--SWSKGTELLTNSSRICIWPDGSLEILNVT-KSDEGKYTCFAENFFGKA-NSTGSLSV 73 (73)
T ss_pred eeEcCCCEE--EEEECCEEcccCCCEEECCCCeEEEccCC-hhHCEEEEEEEECCCCce-EEEEEEEC
Confidence 578898877 89999999877777888788899999998 599999999999999874 44555543
No 17
>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.62 E-value=4.9e-15 Score=77.32 Aligned_cols=63 Identities=17% Similarity=0.203 Sum_probs=48.3
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.+.|+|.|.+ +|+|+++++....+ ...+..|.|.++. .+|+|.|+|.+.|..|.. .....+++
T Consensus 6 ~v~G~P~P~v--~W~k~g~~l~~~~~--~~~~~~L~I~~v~-~~D~G~YtC~a~N~~G~~-~~~~t~~l 68 (70)
T cd05864 6 KYYGYPPPEV--KWYKNGQLIVLNHT--FKRGVHLTIYEVT-EKDAGNYTVVLTNPITKE-EQRHTFQL 68 (70)
T ss_pred EEEEeCCCEE--EEEECCEECCCCCE--EccCCEEEECcCC-HHHCEEEEEEEEECCCce-eeEEEEEE
Confidence 4679999998 89999999865433 3345689999997 599999999999999864 23344443
No 18
>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin. Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).
Probab=99.61 E-value=8.6e-15 Score=77.24 Aligned_cols=65 Identities=17% Similarity=0.250 Sum_probs=50.1
Q ss_pred CccccCCCCeEEEEeeCCEEcCC-CCcEEEccC--C--eEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPI-NRKQKVFPN--G--TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~-~~~~~~~~~--~--~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.+.|.|.|.+ +|+|++..+.. ..++.+..+ + +|.|.++. ..|+|.|+|.+.|..|.. ...+.|.|
T Consensus 6 ~v~G~P~P~v--~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~-~~~~~l~v 75 (75)
T cd05744 6 RVSAIPPPQI--FWKKNNEMLTYNTDRISLYQDNCGRICLLIQNAN-KEDAGWYTVSAVNEAGVV-SCNARLDV 75 (75)
T ss_pred EEeecCCCeE--EEEECCEECCCCCCcEEEEEcCCCeEEEEECCCC-cccCEEEEEEEEcCCCcE-EEEEEEeC
Confidence 4679999988 89999999864 345555432 2 59999997 699999999999999874 44566543
No 19
>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun
Probab=99.61 E-value=6e-15 Score=78.98 Aligned_cols=64 Identities=17% Similarity=0.215 Sum_probs=48.8
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCcEEE----------ccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKV----------FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~~~~----------~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
.+.|+|.|.+ +|+|+|+.+....+... ...+.|.|.++. ..|+|.|+|.|.|..|.. ...+.|.
T Consensus 6 ~v~G~P~P~v--~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~YtC~A~N~~G~~-~~~~~~~ 79 (81)
T cd04971 6 TVRGNPKPTL--TWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPT-HVNNGNYTLVASNEYGQD-SKSISAH 79 (81)
T ss_pred EeEeeCCCcE--EEEECCEECcCCCceeEEEEeecccccccEEEEEECCCC-cccCeEEEEEEEeCCCCe-eeEEEee
Confidence 4689999998 89999999875543321 113479999998 599999999999999874 4455543
No 20
>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.
Probab=99.61 E-value=8.3e-15 Score=81.42 Aligned_cols=66 Identities=17% Similarity=0.177 Sum_probs=51.3
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCcEEEc---------cCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKVF---------PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~~~~~---------~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
.+.|+|.|.+ .|+|++.++..+.+.... ...+|.|.++. .+|+|.|+|.|.|..|. .+.++.|.|.
T Consensus 26 ~v~g~P~P~v--~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~-~~D~G~Ytc~A~N~~g~-~~~t~~l~V~ 100 (101)
T cd05859 26 EVEAYPPPQI--RWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAK-EEDSGLYTALAQNEDAV-KSYTFALQIQ 100 (101)
T ss_pred EEEEeCCCce--EEEECCEECcCCcceEEeccccccceeeccEEEEeeCC-HHHCEEEEEEEEcCCce-EEEEEEEEEE
Confidence 4789999987 899999998755443221 12579999997 69999999999999986 4556777664
No 21
>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins. Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-
Probab=99.60 E-value=1.8e-14 Score=75.55 Aligned_cols=64 Identities=23% Similarity=0.395 Sum_probs=50.8
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCcEEEcc---CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKVFP---NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
++.|.|.|.+ .|+|++..+....+..+.. ...|.|.++. .+|+|.|+|.|.|..|. .+..+.|.
T Consensus 7 ~~~G~P~p~v--~W~k~g~~l~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~-~~~~~~l~ 73 (74)
T cd05748 7 PISGRPTPTV--TWSKDGKPLKLSGRVQIETTASSTSLVIKNAE-RSDSGKYTLTLKNPAGE-KSATINVK 73 (74)
T ss_pred eEeeeCCCeE--EEEECCEEcCCCCeEEEEECCCeEEEEECCCC-cCcCEEEEEEEECCCcc-EEEEEEEE
Confidence 5789999988 8999999986666665532 3579999997 69999999999999986 34455554
No 22
>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1. Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.59 E-value=2.1e-14 Score=78.68 Aligned_cols=64 Identities=16% Similarity=0.296 Sum_probs=49.7
Q ss_pred ccccCCCCeEEEEeeCCEEcCC-CCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPI-NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~-~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
+.|.|.|.+ +|+|++..+.. ..++ ...++.|.|.++.+..|+|.|+|.|.|..|...++.++|.
T Consensus 28 a~G~P~P~i--~W~k~~~~i~~~~~~~-~~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l~ 92 (93)
T cd05849 28 ARANPFPIY--KWRKNNLDIDLTNDRY-SMVGGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATLS 92 (93)
T ss_pred CccCCCCEE--EEEECCEEccCCCCeE-EEECCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEEe
Confidence 578999987 89999988753 3343 3457899999874348999999999999998666666653
No 23
>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.59 E-value=2.4e-14 Score=77.65 Aligned_cols=71 Identities=20% Similarity=0.211 Sum_probs=54.0
Q ss_pred ccccCCCCeEEEEeeCCEEcCCC-CcEEEcc----C---CeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPIN-RKQKVFP----N---GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~-~~~~~~~----~---~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
+.|.|.+.+ +|+|++..+... .++.+.. . .+|.|.++. .+|+|.|+|.|.|..|. ....+.|.|..+|
T Consensus 10 ~~g~p~~~i--~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~-~~D~G~YtC~A~N~~G~-~~~~~~L~V~~~P 85 (88)
T cd05735 10 AHGEKPIIV--RWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTV-REDSGFFSCHAINSYGE-DRGIIQLTVQEPP 85 (88)
T ss_pred EECCCCCEE--EEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCC-cccCEEEEEEEEcCCCc-ceEEEEEEEeCCC
Confidence 568887776 899999887543 3443321 1 469999997 69999999999999987 4568889998877
Q ss_pred CCC
Q psy14473 76 EKP 78 (94)
Q Consensus 76 ~~p 78 (94)
..|
T Consensus 86 ~~P 88 (88)
T cd05735 86 DPP 88 (88)
T ss_pred CCC
Confidence 543
No 24
>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins. Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes
Probab=99.58 E-value=1.7e-14 Score=80.15 Aligned_cols=66 Identities=20% Similarity=0.136 Sum_probs=50.7
Q ss_pred ccc-cCCCCeEEEEeeCCEEcCCCCcEEEc-c-------CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEe
Q psy14473 4 LLL-FLIYSYHQSFYTEGRTLPINRKQKVF-P-------NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73 (94)
Q Consensus 4 v~g-~P~~~i~i~W~k~~~~l~~~~~~~~~-~-------~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~ 73 (94)
+.| .|.|.+ +|+|||.++....+..+. . ...|.|.++. .+|+|.|+|.|.|..|. .+..+.|.|.+
T Consensus 27 v~g~~P~p~v--~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~D~G~Ytc~A~N~~G~-~~~t~~L~V~v 101 (101)
T cd04975 27 VEAYPPPPHI--NWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLK-ESEAGTYTFLASNSDAS-KSLTFELYVNV 101 (101)
T ss_pred EEecCCCCcc--EEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecC-HhhCeeEEEEEECCCcc-EEEEEEEEEEC
Confidence 578 788877 899999998755443322 1 2579999997 69999999999999986 45677777653
No 25
>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.
Probab=99.58 E-value=2.4e-14 Score=75.08 Aligned_cols=55 Identities=18% Similarity=0.215 Sum_probs=44.2
Q ss_pred CccccCCCCeEEEEeeCCEEcCCC-CcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCc
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPIN-RKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY 61 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~-~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~ 61 (94)
.+.|+|.|.+ +|+|++.++... .++.. .+++|.|.++. .+|+|.|+|.+.|....
T Consensus 6 ~v~g~P~P~v--~W~kdg~~l~~~~~~~~~-~~~~L~I~~v~-~~D~G~YtC~a~~~~~~ 61 (72)
T cd07702 6 KVKAFPAPEV--IWLKDGLPAAEKCSRYHV-DGYSLVIKDVT-EEDAGIYTILLGIKQYN 61 (72)
T ss_pred eEEEcCCCeE--EEEECCEECCCCCcEEEe-CCCEEEECcCC-HHHCEEEEEEEEccccc
Confidence 5789999998 899999998654 33333 34589999998 59999999999998643
No 26
>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.
Probab=99.57 E-value=2.1e-14 Score=76.28 Aligned_cols=65 Identities=17% Similarity=0.309 Sum_probs=50.4
Q ss_pred ccccCCCCeEEEEeeCCEE-cC-------CCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRT-LP-------INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~-l~-------~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|+|.|.+ +|+|++.. .. ...+..+..+++|.|.++. .+|+|.|.|.|.|..|...+..+.|+|
T Consensus 7 ~~G~P~P~v--~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~s~~~~l~~ 79 (79)
T cd05734 7 AEGYPPPTI--VWKHSKGRGHPQHTHTCCLAGRIQLLSNGSLLIKHVL-EEDSGYYLCKVSNDVGADASKSMVLTV 79 (79)
T ss_pred CeEeCCCEE--EEEECCCccccccccccccCCCEEEecCCeEEECcCC-cccCEEEEEEEEeCCCCCCceEEEEeC
Confidence 579999988 89996432 11 2345556678899999997 599999999999999987677777654
No 27
>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.56 E-value=4.4e-14 Score=74.67 Aligned_cols=64 Identities=25% Similarity=0.286 Sum_probs=49.4
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCC--cEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINR--KQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~--~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ +|+|+++++.... ......++.|.|.++. ..|+|.|+|.|.|..|.. ...+.|.|
T Consensus 10 a~G~P~P~i--~W~k~g~~i~~~~~~~~~~~~~~~l~i~~v~-~~D~G~Y~C~A~N~~G~~-~~~~~l~v 75 (76)
T cd05868 10 ANGNPKPSI--SWLTNGVPIEIAPTDPSRKVDGDTIIFSKVQ-ERSSAVYQCNASNEYGYL-LANAFVNV 75 (76)
T ss_pred eeEeCCCeE--EEEECCEEccccCCCceEEecCCEEEECCCC-HhhCEEEEEEEEcCCCEE-EEEEEEEe
Confidence 579999988 8999999885321 2223344589999997 699999999999999874 55777766
No 28
>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.
Probab=99.56 E-value=3.9e-14 Score=76.56 Aligned_cols=66 Identities=18% Similarity=0.250 Sum_probs=51.3
Q ss_pred CCccccCCCCeEEEEeeCCEEcCCC-CcEEEcc---CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 2 PPLLLFLIYSYHQSFYTEGRTLPIN-RKQKVFP---NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 2 ~pv~g~P~~~i~i~W~k~~~~l~~~-~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.++.|.|.|.+ +|+|++..+... .++.+.. .+.|.|.++. ..|+|.|+|.|.|..|.. +..+.|.|
T Consensus 17 c~~~G~P~P~v--~W~k~~~~i~~~~~r~~~~~~~~~~~L~I~~~~-~~D~G~Y~c~a~N~~G~~-~~~~~l~V 86 (86)
T cd05894 17 VPISGEPAPTV--TWSRGDKAFTETEGRVRVESYKDLSSFVIEGAE-REDEGVYTITVTNPVGED-HASLFVKV 86 (86)
T ss_pred eeEeecCCCeE--EEEECCEECccCCCeEEEEEcCCeEEEEECCCc-cCcCEEEEEEEEeCCCcE-EEEEEEEC
Confidence 36789999988 899999998643 4555432 3579999998 599999999999999874 45666653
No 29
>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.
Probab=99.56 E-value=7.7e-14 Score=73.60 Aligned_cols=64 Identities=22% Similarity=0.352 Sum_probs=49.8
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCc--EEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRK--QKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~--~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ +|+|++..+..... .....++.|.|.++. .+|+|.|+|.|.|..|.. ...++|.|
T Consensus 10 ~~G~P~p~i--~W~k~g~~i~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~-~~~~~l~V 75 (76)
T cd05867 10 VEGIPTPNI--TWSINGAPIEGTDPDPRRHVSSGALILTDVQ-PSDTAVYQCEARNRHGNL-LANAHVHV 75 (76)
T ss_pred eeEeCCCeE--EEEECCEECCCCCCCceEEeeCCEEEECCCC-hhhCEEEEEEEECCCCeE-EEEEEEEE
Confidence 578999987 89999998864321 223456899999997 699999999999999874 55666665
No 30
>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5. Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.
Probab=99.56 E-value=4.4e-14 Score=77.49 Aligned_cols=64 Identities=19% Similarity=0.299 Sum_probs=48.5
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEE-EccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQK-VFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEV 69 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~-~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l 69 (94)
+.|.|.|.+ +|+|++..+......+ ...++.|.|.++....|+|.|+|.|.|..|...++.+.|
T Consensus 28 ~~G~P~P~i--~W~k~g~~l~~~~~~~~~~~~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S~~~~l 92 (94)
T cd05848 28 ARGNPVPTY--RWLRNGTEIDTESDYRYSLIDGNLIISNPSEVKDSGRYQCLATNSIGSILSREALL 92 (94)
T ss_pred eeecCCCEE--EEEECCeECccCCCceEEeeCCeEEEccCCccCcCEEEEEEEEcCCCeEEeccEEE
Confidence 568999987 8999999886433222 235689999987434899999999999999866655544
No 31
>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.55 E-value=4.7e-14 Score=73.07 Aligned_cols=63 Identities=22% Similarity=0.326 Sum_probs=49.6
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ .|+|++..+.. .+..+..++.|.|.++. .+|+|.|+|.+.|..|.. ...+.|.|
T Consensus 7 ~~g~P~p~v--~W~k~~~~~~~-~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~-~~~~~l~V 69 (69)
T cd05725 7 VGGDPVPTV--LWRKEDGELPK-GRAEILDDKSLKIRNVT-AGDEGSYTCEAENMVGKI-EASASLTV 69 (69)
T ss_pred CccCCCCEE--EEEECCccCCC-CcEEEeeCCEEEECcCC-hhHCEEEEEEEEcCCCcE-EEEEEEEC
Confidence 678999987 89999876643 35556677899999997 599999999999999874 44555543
No 32
>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.
Probab=99.55 E-value=4.7e-14 Score=73.21 Aligned_cols=64 Identities=31% Similarity=0.389 Sum_probs=48.7
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ .|+|++..+...........+.|.|.++. ..|+|.|+|.|.|..|. .+..+.|.|
T Consensus 7 ~~g~P~p~v--~W~k~~~~~~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~-~~~~~~l~V 70 (71)
T cd05731 7 AEGLPTPEI--SWIKIGGELPADRTKFENFNKTLKIDNVS-EEDDGEYRCTASNSLGS-ARHTISVTV 70 (71)
T ss_pred eeEecCCeE--EEEECCeECCCCceeEecCCCEEEECCCC-HHHCEEEEEEEEeCCce-EEEEEEEEE
Confidence 578999987 89999887754322222345689999997 69999999999999986 455666655
No 33
>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago
Probab=99.55 E-value=9.2e-14 Score=74.58 Aligned_cols=63 Identities=24% Similarity=0.431 Sum_probs=51.3
Q ss_pred cccCCCCeEEEEeeCCEEcCC-CCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPI-NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~-~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
.|.|.+.+ .|+|++..+.. ..+..+..++.|.|.++. ..|+|.|+|.+.|..|...+..+.|.
T Consensus 22 ~g~p~p~i--~W~k~g~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~s~~~~l~ 85 (86)
T cd05724 22 RGHPEPTV--SWRKDGQPLNLDNERVRIVDDGNLLIAEAR-KSDEGTYKCVATNMVGERESAAARLS 85 (86)
T ss_pred CCCCCCEE--EEEECCEECCCCCCCEEEccCCEEEEeECC-cccCEEEEEEEEeccCceeeeeEEEE
Confidence 57888877 79999998865 456666667899999998 59999999999999987666566554
No 34
>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni
Probab=99.54 E-value=1.2e-13 Score=75.09 Aligned_cols=68 Identities=21% Similarity=0.178 Sum_probs=53.7
Q ss_pred ccccCCCCeEEEEeeCCEEc--------CCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTL--------PINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l--------~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
+.|.|.|.+ .|+|++..+ ....++.+..++.|.|.++. .+|+|.|+|.+.|..|. ....+.|.|....
T Consensus 10 ~~g~P~p~v--~W~k~g~~~~~~~~~~~~~~~r~~v~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~-~~~~~~l~V~~~~ 85 (90)
T cd05726 10 ATGNPQPAI--FWQKEGSQNLLFSYQPPQSSSRFSVSQTGDLTITNVQ-RSDVGYYICQTLNVAGS-ILTKAYLEVTDVI 85 (90)
T ss_pred CCccCCCEE--EEEeCCCcceeecccCCCCCCeEEECCCCeEEEeeCC-hhhCEEEEEEEEcCCCc-eEEEEEEEEeecc
Confidence 578898887 799987643 12345666667899999997 59999999999999987 4567888887654
No 35
>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4. Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s
Probab=99.54 E-value=1.6e-13 Score=72.69 Aligned_cols=67 Identities=18% Similarity=0.306 Sum_probs=50.5
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCC-cEEEc-cCCeEEEeccCCCCCCeEEEEEEecCCCcee-eeEEEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINR-KQKVF-PNGTLIIENVERQSDQATYTCVAKTAQGYSS-RGTLEVQVM 72 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~-~~~~~-~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~-~~~~~l~v~ 72 (94)
.+.|.|.|.+ +|+|++.++.... +..+. ..+.|.|.++. .+|+|.|+|.+.|..|... +..+.|.|.
T Consensus 6 ~~~g~P~p~v--~W~k~g~~l~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~~s~~~~~l~v~ 75 (77)
T cd05760 6 HIDGHPRPTY--QWFRDGTPLSDGQGNYSVSSKERTLTLRSAG-PDDSGLYYCCAHNAFGSVCSSQNFTLSII 75 (77)
T ss_pred EeeecCCCcE--EEEECCEECCCCCccEEEeCCCCEEEEeeCC-cccCEEEEEEEEeCCCeEeeCceEEEEEe
Confidence 3679999988 8999999886543 33343 34689999997 6999999999999998743 345666553
No 36
>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2. Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.54 E-value=1e-13 Score=75.86 Aligned_cols=64 Identities=23% Similarity=0.378 Sum_probs=49.9
Q ss_pred ccccCCCCeEEEEee-CCEEcCCCCcEEEccCC---eEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYT-EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k-~~~~l~~~~~~~~~~~~---~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|. .+ .|++ ++..+....|+.+..++ .|.|.++. .+|+|.|+|.|.|..|....+++.|.+
T Consensus 24 ~~G~P~-~v--~W~k~~g~~~~~~~r~~~~~~g~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~~~~~i~l~~ 91 (92)
T cd05866 24 AIGEPE-SI--DWYNPQGEKIVSSQRVVVQKEGVRSRLTIYNAN-IEDAGIYRCQATDAKGQTQEATVVLEI 91 (92)
T ss_pred EEEeCC-eE--EEEeCCCeEecCCCCEEEEeCCCeeEEEEecCC-hHHCEEEEEEEEcCCCcEEEEEEEEEE
Confidence 468886 55 8998 57777666677665555 79999997 699999999999999886666776654
No 37
>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the
Probab=99.53 E-value=1.8e-13 Score=74.92 Aligned_cols=66 Identities=20% Similarity=0.358 Sum_probs=51.9
Q ss_pred ccccCCCCeEEEEeeCCEEcCCC-CcEEEccC-CeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEe
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPIN-RKQKVFPN-GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~-~~~~~~~~-~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~ 73 (94)
+.|+|.|.+ .|+|++..+... .++....+ ..|.|.++. .+|+|.|+|.|.|..|.. ...+.|.|..
T Consensus 27 ~~g~P~p~v--~W~k~g~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~-~~~~~L~V~~ 94 (95)
T cd05730 27 ADGFPEPTM--TWTKDGEPIESGEEKYSFNEDGSEMTILDVD-KLDEAEYTCIAENKAGEQ-EAEIHLKVFA 94 (95)
T ss_pred ccEeCCCEE--EEEECCEECcCCCCEEEEeCCCCEEEECCCC-hhhCEEEEEEEEcCCCeE-EEEEEEEEEe
Confidence 578999987 899999988654 44444434 469999997 599999999999999874 5677887754
No 38
>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.
Probab=99.53 E-value=2e-13 Score=72.33 Aligned_cols=64 Identities=14% Similarity=0.265 Sum_probs=48.3
Q ss_pred ccccCCCCeEEEEeeCCEEcC--CCCcEEE-ccCCeEEEeccCC---CCCCeEEEEEEecCCCceeeeEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLP--INRKQKV-FPNGTLIIENVER---QSDQATYTCVAKTAQGYSSRGTLEV 69 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~--~~~~~~~-~~~~~L~i~~v~~---~~D~G~Y~C~~~n~~g~~~~~~~~l 69 (94)
+.|+|.|.+ +|+|++..+. .+.++.+ ..+++|.|..+.. ..|+|.|+|.|.|..|...+..++|
T Consensus 7 ~~G~P~P~v--~W~k~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05875 7 AKGNPVPTF--QWTRNGKFFNVAKDPRVSMRRRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSNKILL 76 (77)
T ss_pred ccccCCCEE--EEEECCEEccCcCCCcEEEeCCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEEEEEE
Confidence 679999988 8999998763 3344444 4578999987631 1469999999999999876666554
No 39
>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily. Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.53 E-value=1.3e-13 Score=72.50 Aligned_cols=65 Identities=20% Similarity=0.336 Sum_probs=48.8
Q ss_pred CccccCCCCeEEEEeeCCEEc-C--CCCcEEEc-cCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTL-P--INRKQKVF-PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l-~--~~~~~~~~-~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.+.|.|.|.+ +|+|++... . ...++.+. .++.|.|.++. .+|+|.|+|.|.|..|. ....+.|.|
T Consensus 6 ~~~G~P~P~v--~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~A~N~~G~-~~~~~~l~V 74 (75)
T cd05763 6 AATGHPTPQI--AWQKDGGTDFPAARERRMHVMPEDDVFFIVDVK-IEDTGVYSCTAQNTAGS-ISANATLTV 74 (75)
T ss_pred ecccccCCEE--EEEeCCCccCCcccccceEEecCCCEEEEeeCC-cccCEEEEEEEEcCCCE-EEeeEEEEE
Confidence 4689999988 899987642 2 22344443 35689999997 69999999999999986 455677765
No 40
>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.53 E-value=1.6e-13 Score=72.10 Aligned_cols=65 Identities=25% Similarity=0.322 Sum_probs=50.8
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCc--EEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRK--QKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~--~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.+.|.|.|.+ .|++++..+....+ .....++.|.|.++. ..|+|.|+|.|.|..|.. ...+.|.|
T Consensus 9 ~~~g~P~p~i--~W~~~g~~~~~~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~A~N~~G~~-~~~~~l~V 75 (76)
T cd04978 9 EAEGIPQPTI--TWRLNGVPIEELPPDPRRRVDGGTLILSNVQ-PNDTAVYQCNASNVHGYL-LANAFVHV 75 (76)
T ss_pred EceeeCCCEE--EEEECCEECCCCCCcceEEccCCEEEECCCC-hhhCEEEEEEEEccCCeE-EEeEEEEE
Confidence 3578999987 89999998864432 233456799999997 599999999999999874 55666665
No 41
>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily. Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.52 E-value=1.7e-13 Score=71.77 Aligned_cols=63 Identities=24% Similarity=0.344 Sum_probs=49.9
Q ss_pred ccccCCCCeEEEEee-CCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 4 LLLFLIYSYHQSFYT-EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 4 v~g~P~~~i~i~W~k-~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
+.|.|.|.+ .|++ ++..+....+.....+++|.|..+. ..|+|.|+|.|.|..|. .+..+.|.
T Consensus 10 ~~g~P~p~v--~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~N~~G~-~~~~~~l~ 73 (74)
T cd05764 10 ARGDPEPAI--HWISPDGKLISNSSRTLVYDNGTLDILITT-VKDTGSFTCIASNAAGE-ATATVELH 73 (74)
T ss_pred ccCcCCCEE--EEEeCCCEEecCCCeEEEecCCEEEEEECC-hhhCEEEEEEEECCCCe-EEEEEEEE
Confidence 578898887 8997 6776665556666778899999997 69999999999999986 35555554
No 42
>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1. Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.
Probab=99.52 E-value=9.9e-14 Score=75.22 Aligned_cols=63 Identities=21% Similarity=0.271 Sum_probs=49.3
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ +|+|++..+....+.. ..++.|.|.++. ..|+|.|+|.|.|..|.. ...+.|.|
T Consensus 25 ~~G~P~P~v--~W~k~~~~~~~~~~~~-~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~-~~~~~l~V 87 (88)
T cd05851 25 ALGNPVPVI--RWRKILEPMPATAEIS-MSGAVLKIFNIQ-PEDEGTYECEAENIKGKD-KHQARVYV 87 (88)
T ss_pred ecccCCCEE--EEEECCcCCCCCCEEe-cCCCEEEECcCC-hhhCEEEEEEEEcCCCce-EEEEEEEE
Confidence 578999988 8999988776544433 345689999997 599999999999999874 45666655
No 43
>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2. Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c
Probab=99.52 E-value=2.2e-13 Score=74.71 Aligned_cols=63 Identities=17% Similarity=0.318 Sum_probs=48.2
Q ss_pred ccccCCCCeEEEEeeCCEEcCCC--CcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPIN--RKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEV 69 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~--~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l 69 (94)
+.|.|.+.+ +|++++..+... .++. ..++.|.|.++.+..|+|.|+|.|.|..|...++.+.|
T Consensus 28 a~g~P~p~i--~W~~~g~~l~~~~~~~~~-~~~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l 92 (94)
T cd05850 28 ARASPPATY--RWKMNGTEIKFAPESRYT-LVAGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL 92 (94)
T ss_pred ceeCCCCEE--EEEECCEECccCCCceEE-EECCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence 468898877 899999998633 2333 34679999886534899999999999999876666655
No 44
>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.
Probab=99.52 E-value=1.3e-13 Score=73.05 Aligned_cols=64 Identities=17% Similarity=0.288 Sum_probs=48.3
Q ss_pred ccccCCCCeEEEEeeCCEEcCCC--CcEEE-ccCCeEEEeccCC---CCCCeEEEEEEecCCCceeeeEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPIN--RKQKV-FPNGTLIIENVER---QSDQATYTCVAKTAQGYSSRGTLEV 69 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~--~~~~~-~~~~~L~i~~v~~---~~D~G~Y~C~~~n~~g~~~~~~~~l 69 (94)
+.|.|.|.+ +|+|++..+... .++.. ..++.|.|..+.. .+|+|.|+|.|.|..|...+..++|
T Consensus 7 ~~G~P~P~v--~W~k~g~~l~~~~~~~~~~~~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~l 76 (77)
T cd05733 7 AKGNPPPTF--SWTRNGTHFDPEKDPRVTMKPDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAISNEIHL 76 (77)
T ss_pred CcccCCCeE--EEEECCeECCCCCCCCEEEeCCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEccccEE
Confidence 679999988 899999987532 34433 3578999988741 2689999999999999866655544
No 45
>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins. Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.
Probab=99.51 E-value=2.5e-13 Score=74.44 Aligned_cols=66 Identities=24% Similarity=0.349 Sum_probs=51.0
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCC--cEEEccCCeEEEeccC----CCCCCeEEEEEEecC-CCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINR--KQKVFPNGTLIIENVE----RQSDQATYTCVAKTA-QGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~--~~~~~~~~~L~i~~v~----~~~D~G~Y~C~~~n~-~g~~~~~~~~l~v 71 (94)
+.|.|.+.+ +|+|++..+.... +..+..+++|.|.++. ...|+|.|+|.+.|. .|...++.+.|.|
T Consensus 23 v~g~P~p~i--~W~k~g~~l~~~~~~~~~~~~~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~s~~~~l~v 95 (95)
T cd05722 23 AEGEPPPKI--EWKKDGVLLNLVSDERRQQLPNGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIVSRTARLTV 95 (95)
T ss_pred cccCCCCEE--EEEECCeECccccCcceEEccCCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEEEeeeEEeC
Confidence 568888877 8999999886443 3556677888887762 248999999999999 9887677777654
No 46
>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.
Probab=99.51 E-value=1.4e-13 Score=75.07 Aligned_cols=64 Identities=19% Similarity=0.186 Sum_probs=49.1
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCcEEEc-c---CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKVF-P---NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~~~~~-~---~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
.+.|.|.|.+ .|+|++..+....++.+. . ..+|.|.++. .+|+|.|+|.+.|..|.. ...+.|.
T Consensus 24 ~v~G~P~p~v--~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~-~~~~~v~ 91 (92)
T cd05737 24 TVFGDPDPEV--SWLKNDQALALSDHYNVKVEQGKYASLTIKGVS-SEDSGKYGIVVKNKYGGE-TVDVTVS 91 (92)
T ss_pred EEEecCCCeE--EEEECCEECccCCCEEEEEcCCCEEEEEEccCC-hhhCEEEEEEEEECCCcc-eEEEEEe
Confidence 4678999988 799999998766665543 2 2369999997 599999999999999864 3344443
No 47
>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.
Probab=99.50 E-value=2.9e-13 Score=71.72 Aligned_cols=65 Identities=20% Similarity=0.319 Sum_probs=47.8
Q ss_pred CccccCCCCeEEEEeeCCEEcCC--CCcEEE-ccCCeEEEeccCC---CCCCeEEEEEEecCCCceeeeEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPI--NRKQKV-FPNGTLIIENVER---QSDQATYTCVAKTAQGYSSRGTLEV 69 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~--~~~~~~-~~~~~L~i~~v~~---~~D~G~Y~C~~~n~~g~~~~~~~~l 69 (94)
.+.|.|.|.+ +|+|++..+.. ..+..+ ..+++|.|..+.. ..|+|.|+|.|.|..|...+..++|
T Consensus 6 ~a~G~P~P~i--~W~k~g~~l~~~~~~~~~~~~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~~~ 76 (77)
T cd05874 6 EAKGKPPPSF--SWTRNGTHFDIDKDPKVTMKPNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNIVI 76 (77)
T ss_pred eCcccCCCeE--EEEECCeECCCcCCCCEEEeCCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEEEE
Confidence 3679999998 89999998743 233444 3478898887742 1378999999999999866655554
No 48
>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the
Probab=99.50 E-value=3.7e-13 Score=73.45 Aligned_cols=63 Identities=21% Similarity=0.195 Sum_probs=49.7
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEc-cCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVF-PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~-~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|. .|.+ .|+|++..+... +..+. .+++|.|.++. .+|+|.|+|.|.|..|...+..+.|.|
T Consensus 27 a~g~-~p~i--~W~kng~~l~~~-~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~~S~~~~L~V 90 (91)
T cd05740 27 AEGQ-ATYI--WWVNNGSLLVPP-RLQLSNDNRTLTFNNVT-RSDTGHYQCEASNEVSNMTSDPYILNV 90 (91)
T ss_pred eCCC-CCEE--EEEECCEECCCC-CEEEeCCCCEEEECcCC-hhhCEEEEEEEEcCCCCEEeeeEEEEe
Confidence 4567 6666 899999887543 44443 34689999997 599999999999999987777777776
No 49
>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.50 E-value=2.4e-13 Score=73.18 Aligned_cols=63 Identities=25% Similarity=0.370 Sum_probs=50.5
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ .|+|++..+....++.. .++.|.|.++. ..|+|.|+|.|.|..|. ....+.|+|
T Consensus 23 ~~g~p~p~v--~W~k~g~~~~~~~~~~~-~~~~L~i~~~~-~~D~G~Y~C~a~N~~G~-~~~~~~l~V 85 (85)
T cd05728 23 ASGNPRPAY--RWLKNGQPLASENRIEV-EAGDLRITKLS-LSDSGMYQCVAENKHGT-IYASAELAV 85 (85)
T ss_pred eeEeCCCEE--EEEECCEECCCCCeEEE-eCCEEEEeeCC-HHHCEEEEEEEECCCCe-EEEEEEEEC
Confidence 578998877 89999999876656554 46799999997 69999999999999986 455666543
No 50
>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans
Probab=99.49 E-value=2.3e-13 Score=75.02 Aligned_cols=65 Identities=25% Similarity=0.358 Sum_probs=47.4
Q ss_pred ccccCC-CCeEEEEee-CCEEcCC-CCcEEEccC----CeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLI-YSYHQSFYT-EGRTLPI-NRKQKVFPN----GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~-~~i~i~W~k-~~~~l~~-~~~~~~~~~----~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|. |.+ +|++ ++..+.. ..++.+..+ ++|.|.++. .+|+|.|+|.|.|..|.....++.|.|
T Consensus 24 v~G~P~~p~i--~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~-~~D~G~YtC~A~N~~~g~~~~s~~l~v 95 (96)
T cd05865 24 VAGEAKDKDI--SWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNAN-IDDAGIYKCVVSNEDEGESEATVNVKI 95 (96)
T ss_pred EeCCCCCCEE--EEECCCCcCccccCCeEEEEeCCCCceEEEEeccC-hhhCEEEEEEEEcCCCCcEEEEEEEEE
Confidence 578885 576 8998 7766654 345444322 579999997 699999999999997444566777765
No 51
>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.
Probab=99.48 E-value=6.3e-13 Score=71.23 Aligned_cols=65 Identities=26% Similarity=0.371 Sum_probs=48.7
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCcE---EE-ccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRKQ---KV-FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~~---~~-~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.+.|+|.+.+ +|+|++..+....+. .. .....|.|.++. ..|+|.|+|.+.|..|. ....+.|.|
T Consensus 17 ~~~g~P~p~i--~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~-~~D~G~Y~C~a~N~~G~-~~~~~~l~v 85 (85)
T cd05857 17 PAAGNPTPTM--RWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVV-PSDKGNYTCVVENEYGS-INHTYHLDV 85 (85)
T ss_pred EcCCCCCCEE--EEEECCEECCCCCceeeeEEeCCceEEEEccCC-cccCEEEEEEEEeCCCE-EEEEEEEEC
Confidence 3578888877 899999998654432 22 234579999997 69999999999999987 455666653
No 52
>cd04968 Ig3_Contactin_like Third Ig domain of contactin. Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week
Probab=99.46 E-value=7.1e-13 Score=71.64 Aligned_cols=63 Identities=19% Similarity=0.275 Sum_probs=48.8
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ +|+|++..+....+.. ..++.|.|.++. .+|+|.|+|.+.|..|.. ...+.|.|
T Consensus 25 ~~g~P~p~v--~W~k~~~~~~~~~~~~-~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~~-~~~~~l~V 87 (88)
T cd04968 25 ALGNPVPQI--KWRKVDGSMPSSAEIS-MSGAVLKIPNIQ-FEDEGTYECEAENIKGKD-THQGRIYV 87 (88)
T ss_pred eeEeCCCEE--EEEECCCcCCCccEEE-EeCCEEEECCCC-cccCEEEEEEEEECCCcE-EEEEEEEE
Confidence 568898887 8999877665443333 457899999997 699999999999999874 45666655
No 53
>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins. Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.
Probab=99.46 E-value=9e-13 Score=71.85 Aligned_cols=63 Identities=17% Similarity=0.300 Sum_probs=49.3
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCcEEEcc---CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKVFP---NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEV 69 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l 69 (94)
.+.|+|.|.+ .|+|++..+....++.+.. .+.|.|.++. .+|+|.|+|.+.|..|.. ...+.|
T Consensus 26 ~~~g~P~p~v--~W~k~g~~l~~~~~~~~~~~~~~~~L~i~~~~-~~D~G~Y~C~a~N~~G~~-~~~~~l 91 (92)
T cd05747 26 DVDGEPAPTV--TWMREGQIIVSSQRHQITSTEYKSTFEISKVQ-MSDEGNYTVVVENSEGKQ-EAQFTL 91 (92)
T ss_pred EEeecCCCEE--EEEECCEECCCCCcEEEEEcCCeeEEEECCCC-cccCEeEEEEEEcCCCCE-eEEEEe
Confidence 3578999887 8999999887666666543 3589999997 699999999999999863 444443
No 54
>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins. Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res
Probab=99.45 E-value=1.3e-12 Score=71.51 Aligned_cols=65 Identities=23% Similarity=0.375 Sum_probs=46.7
Q ss_pred ccccCCCCeEEEEeeCCEEcCC-----CCcEEEccCCeEEEecc-----CCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPI-----NRKQKVFPNGTLIIENV-----ERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~-----~~~~~~~~~~~L~i~~v-----~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|+|.|.+ +|+|++..+.. ..+.....++.+.+..+ . .+|+|.|+|.+.|..|...+..+.|.|
T Consensus 25 ~~g~P~p~i--~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~-~~D~G~Y~C~a~N~~G~~~s~~~~l~v 99 (100)
T cd07693 25 AEGRPTPTI--QWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKG-RSDEGVYVCVAHNSLGEAVSRNASLEV 99 (100)
T ss_pred CCcCCCCEE--EEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCC-cCcCEEEEEEEEccccceecceEEEEe
Confidence 578898877 89999998865 12233345565544332 4 589999999999999986666777765
No 55
>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins. Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.
Probab=99.45 E-value=2e-12 Score=68.06 Aligned_cols=65 Identities=23% Similarity=0.342 Sum_probs=50.3
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCC--cEEEccCC-eEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINR--KQKVFPNG-TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~--~~~~~~~~-~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
+.|.|.|.+ .|+|++..+.... +.....++ .|.|.++. ..|.|.|+|.+.|..|.. ...+.|.|.
T Consensus 7 v~g~P~p~v--~W~k~~~~l~~~~~~~~~~~~~~~~l~I~~~~-~~D~G~Y~C~a~N~~G~~-~~~~~l~V~ 74 (76)
T cd05736 7 AEGIPLPRL--TWLKNGMDITPKLSKQLTLIANGSELHISNVR-YEDTGAYTCIAKNEAGVD-EDISSLFVE 74 (76)
T ss_pred eeecCCCEE--EEEECCEECCCCCCccEEEeCCCCEEEECcCC-cccCEEEEEEEEcCCCCc-ceEEEEEEE
Confidence 678998887 8999999876442 34444444 69999997 699999999999999874 557777664
No 56
>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.
Probab=99.44 E-value=8.5e-13 Score=69.94 Aligned_cols=56 Identities=25% Similarity=0.317 Sum_probs=45.5
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEcc---CCeEEEeccCCCCCCeEEEEEEecCCCce
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFP---NGTLIIENVERQSDQATYTCVAKTAQGYS 62 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~ 62 (94)
+.|.|.|.+ +|++++..+....++.+.. .+.|.|.++. .+|+|.|+|.+.|..|..
T Consensus 10 ~~g~P~p~v--~W~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~ 68 (78)
T cd05743 10 ATGVPTPII--NWRLNWGHVPDSARVSITSEGGYGTLTIRDVK-ESDQGAYTCEAINTRGMV 68 (78)
T ss_pred EEEecCCEE--EEEECCeECCCCCCEEEEECCCEEEEEECCCC-hHHCEEEEEEEEecCCEE
Confidence 568899987 8999998887666655432 3579999997 699999999999999864
No 57
>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin. Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p
Probab=99.43 E-value=1.9e-12 Score=72.78 Aligned_cols=69 Identities=19% Similarity=0.192 Sum_probs=51.7
Q ss_pred ccccCCCCeEEEEeeCCEEcCC-CCcEEE--cc-----CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPI-NRKQKV--FP-----NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~-~~~~~~--~~-----~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
+.|.|.+.+ +|+|++..+.. +.++.+ .. .+.|.|.++.+.+|.|.|+|.|.|..|.. ...+.|.+..+|
T Consensus 32 a~G~P~p~i--~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~-~~~i~L~~~~~p 108 (109)
T cd05773 32 AQGVPRVQF--RWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGED-SLDIQLVSTSRP 108 (109)
T ss_pred CcccCCCEE--EEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccC-cEEEEEEecCCC
Confidence 468888876 89999998863 334432 11 35799998852489999999999999874 568888887665
No 58
>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC. TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo
Probab=99.43 E-value=1.5e-12 Score=70.73 Aligned_cols=64 Identities=19% Similarity=0.203 Sum_probs=48.3
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEE---ccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKV---FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~---~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ +|++++..+........ .....|.|.++. ..|.|.|+|.|.|..|.. ...+.|+|
T Consensus 24 ~~G~P~p~v--~W~~~g~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~g~Y~C~A~N~~G~~-~~~~~L~v 90 (90)
T cd04972 24 AEGSPLPKV--EWIIAGLIVIQTRTDTLETTVDIYNLQLSNIT-SETQTTVTCTAENPVGQA-NVSVQVTV 90 (90)
T ss_pred EEEcCCCeE--EEEECCEEccCCccEEEEecCCEEEEEEecCC-cccCEEEEEEEECCCCce-eEEEEEeC
Confidence 568999988 89999998765433222 233579999997 699999999999999874 45666653
No 59
>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1
Probab=99.41 E-value=5.9e-12 Score=68.87 Aligned_cols=50 Identities=26% Similarity=0.431 Sum_probs=40.4
Q ss_pred CCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCc
Q psy14473 8 LIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY 61 (94)
Q Consensus 8 P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~ 61 (94)
|.+.+ .|+|+++++....+... .++.|.|.++. .+|+|.|+|.+.|..+.
T Consensus 28 ~~p~i--~Wyk~~~~i~~~~~~~~-~~~~L~I~~v~-~~DsG~YtC~~~n~~~~ 77 (92)
T cd05757 28 TLPPV--QWYKDCKLLEGDRKRFV-KGSKLLIQNVT-EEDAGNYTCKLTFTHNG 77 (92)
T ss_pred CCCcE--EEeECCEECCCCccEEe-cCCEEEEeeCC-hhhCEEEEEEEEecCCC
Confidence 55666 89999999875544333 67899999997 69999999999988765
No 60
>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr
Probab=99.40 E-value=2.9e-12 Score=70.46 Aligned_cols=64 Identities=19% Similarity=0.233 Sum_probs=47.0
Q ss_pred ccccCCCCeEEEEeeCCEEcCCC-----CcEEEcc---CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPIN-----RKQKVFP---NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~-----~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ +|++++..+... .++.+.. .+.|.|.++. .+|+|.|+|.|.|..|.. ..++.|.|
T Consensus 26 ~~G~P~P~v--~W~~~~~~~~~~~~~~~~~~~v~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~-~~~~~l~v 97 (97)
T cd05869 26 ASGDPIPSI--TWRTSTRNISSEEKTLDGHIVVRSHARVSSLTLKYIQ-YTDAGEYLCTASNTIGQD-SQSMYLEV 97 (97)
T ss_pred eeEeCCCEE--EEEECCccccCCccccCccEEEEcCccEEEEEEecCc-cCcCEEEEEEEecCCCCe-eEEEEEEC
Confidence 468899987 899988776432 2333322 2479999997 699999999999999874 55666654
No 61
>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.
Probab=99.40 E-value=3.3e-12 Score=69.76 Aligned_cols=63 Identities=14% Similarity=0.181 Sum_probs=47.3
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEc-cC---CeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVF-PN---GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~-~~---~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
+.|.|.|.+ .|+|++..+....++.+. .. .+|.|.++. .+|+|.|+|.+.|..|.. ...+.|.
T Consensus 25 v~g~P~p~i--~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~-~~~~~v~ 91 (92)
T cd05891 25 VFGNPDPEV--IWFKNDQDIELSEHYSVKLEQGKYASLTIKGVT-SEDSGKYSINVKNKYGGE-TVDVTVS 91 (92)
T ss_pred EEEeCCCeE--EEEECCEECCCCCCEEEEEcCCCEEEEEECCCC-hhhCEEEEEEEEeCCCce-eeEEEEE
Confidence 568888877 899999988766555432 22 379999997 699999999999999864 4444443
No 62
>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins. Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s
Probab=99.40 E-value=2.8e-12 Score=70.04 Aligned_cols=63 Identities=29% Similarity=0.443 Sum_probs=44.7
Q ss_pred ccccCCCCeEEEEee-CCEEcCCCCcEEEccC----CeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 4 LLLFLIYSYHQSFYT-EGRTLPINRKQKVFPN----GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 4 v~g~P~~~i~i~W~k-~~~~l~~~~~~~~~~~----~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
+.|.|. .+ +|++ ++..+....+..+..+ .+|.|.++. .+|+|.|+|.|.|..|.....++.|.
T Consensus 24 ~~G~p~-~i--~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~g~~~~~sv~l~ 91 (92)
T cd04977 24 VIGEPK-DI--SWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNAN-IEDAGIYKCVATDAKGTESEATVNLK 91 (92)
T ss_pred eEeeCC-eE--EEECCCCCEeccCCCEEEEeCCCCEEEEEEecCC-cccCEEEEEEEEcCCCCcceeEEEEE
Confidence 467763 55 8998 6666654444444322 379999997 69999999999998766556666664
No 63
>cd04967 Ig1_Contactin First Ig domain of contactin. Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata
Probab=99.39 E-value=3.7e-12 Score=69.28 Aligned_cols=58 Identities=19% Similarity=0.311 Sum_probs=44.2
Q ss_pred ccccCCCCeEEEEeeCCEEcCC--CCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceee
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPI--NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR 64 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~--~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~ 64 (94)
+.|.|.+.+ +|+|++..+.. ..++. ..++.|.|.++.+..|+|.|+|.+.|..|...+
T Consensus 28 ~~g~p~p~i--~W~k~~~~l~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S 87 (91)
T cd04967 28 ARGSPPPTY--RWLMNGTEIDDEPDSRYS-LVGGNLVISNPSKAKDAGRYQCLASNIVGTVLS 87 (91)
T ss_pred eeEcCCCEE--EEEECCEECCCCCCCCEE-EECCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence 568888877 89999998843 22333 356789998875348999999999999987544
No 64
>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).
Probab=99.38 E-value=5.8e-12 Score=65.40 Aligned_cols=59 Identities=24% Similarity=0.316 Sum_probs=43.6
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEV 69 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l 69 (94)
+.|.|.|.+ +|+|++..+....+... .+..|.|.++ .|+|.|+|.|.|..|. ...++.|
T Consensus 10 a~G~P~P~v--~W~k~g~~l~~~~~~~~-~~~~L~i~~~---~d~G~Y~C~A~N~~G~-~~~~a~l 68 (69)
T cd05739 10 AVGAPMPYV--KWMKGGEELTKEDEMPV-GRNVLELTNI---YESANYTCVAISSLGM-IEATAQV 68 (69)
T ss_pred eeecCCCEE--EEEECCEECCCccceec-CccEEEEecc---ccCeeEEEEEEeCCCE-EEEEEEE
Confidence 568999988 79999988765444332 3457888875 4799999999999986 3444443
No 65
>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.
Probab=99.38 E-value=2.6e-12 Score=68.11 Aligned_cols=63 Identities=17% Similarity=0.194 Sum_probs=46.2
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEE-ccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKV-FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
+.|.|.|.+ +|+|++..+........ .....|.|.++. .+|+|.|+|.+.|..|. ....+.|.
T Consensus 18 ~~g~p~p~i--~W~k~~~~~~~~~~~~~~~~~~~L~i~~v~-~~D~G~Y~C~a~N~~G~-~~~~~~v~ 81 (82)
T cd05856 18 ASGNPRPDI--TWLKDNKPLTPTEIGESRKKKWTLSLKNLK-PEDSGKYTCHVSNRAGE-INATYKVD 81 (82)
T ss_pred eeEeCCCcE--EEEECCcCCcCCccceecCceEEEEEccCC-hhhCEEEEEEEEcCCcc-EEEEEEEe
Confidence 468888887 89999887754332222 223579999997 69999999999999986 34455544
No 66
>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins. Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.36 E-value=6.1e-12 Score=69.04 Aligned_cols=61 Identities=16% Similarity=0.289 Sum_probs=42.9
Q ss_pred cCCCCeEEEEeeCCEEcCCC--CcEEE-ccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 7 FLIYSYHQSFYTEGRTLPIN--RKQKV-FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 7 ~P~~~i~i~W~k~~~~l~~~--~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.|.+.+ .|||++..+... ...++ ..++.|.|.++. .+|+|.|+|.+.|..|. ....+.|+|
T Consensus 31 ~p~~~v--~Wyk~~~~~~~~~~~~~r~~~~~~~L~I~~~~-~~DsG~Y~C~~~N~~g~-~~~~~~L~v 94 (94)
T cd05756 31 SPGLNL--TWYKSDGKTPIPTEERSRMHQQKDLLWFLPAA-LEDSGLYTCVVRNSTYC-MKVSISLTV 94 (94)
T ss_pred CCCceE--EEEEcCCCCcccccccceeeecCCeEEEccCC-cccCeEEEEEEcCCCcc-EEEEEEEEC
Confidence 577776 899998664321 11222 246789999997 69999999999999876 344555543
No 67
>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....
Probab=99.36 E-value=3.7e-12 Score=68.70 Aligned_cols=64 Identities=27% Similarity=0.452 Sum_probs=50.2
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEc---cCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVF---PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~---~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.+.+ .|++++..+..+.++.+. ...+|.|.++. .+|+|.|+|.+.|..|. ....+.|.|
T Consensus 24 ~~~~p~~~v--~W~~~~~~l~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~~~n~~g~-~~~~~~l~V 90 (90)
T PF07679_consen 24 VSGNPPPTV--TWYKNGRPLTSSQRYQIESDGGSSSLTIKNVT-REDAGTYTCVASNSSGE-ATASVNLTV 90 (90)
T ss_dssp EEESSSSEE--EEEETTEEEESSSSEEEEEETTEEEEEESSES-GGGSEEEEEEEEETTEE-EEEEEEEEE
T ss_pred EEeCCCCcc--cccccccceeeeeeeeeecccceeEEccCCCC-hhhCEEEEEEEEECCCE-EEEEEEEEC
Confidence 567777777 899999999877777653 34579999998 59999999999999765 445666654
No 68
>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs). Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv
Probab=99.35 E-value=5.6e-12 Score=65.94 Aligned_cols=56 Identities=21% Similarity=0.460 Sum_probs=43.0
Q ss_pred ccc-cCCCCeEEEEeeCCEEcCCCCcEE---E---ccCCeEEEeccCCCCCCeEEEEEEecCCCce
Q psy14473 4 LLL-FLIYSYHQSFYTEGRTLPINRKQK---V---FPNGTLIIENVERQSDQATYTCVAKTAQGYS 62 (94)
Q Consensus 4 v~g-~P~~~i~i~W~k~~~~l~~~~~~~---~---~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~ 62 (94)
+.| .|.+.+ .|+|++..+....+.. + ...+.|.|.++. .+|+|.|+|.+.|..|..
T Consensus 7 ~~g~~P~p~~--~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~~ 69 (75)
T cd05750 7 ATSEYPSLRF--KWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAK-LADSGEYTCVVENILGND 69 (75)
T ss_pred ccCCCCCceE--EEEcCCeeccccCCcceEEEEecCceEEEEEccCC-cccCeEEEEEEEEcCCce
Confidence 456 888877 8999999886543322 2 123579999997 699999999999999864
No 69
>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.
Probab=99.34 E-value=1.2e-11 Score=68.18 Aligned_cols=64 Identities=20% Similarity=0.266 Sum_probs=46.2
Q ss_pred ccccCCCCeEEEEeeC--CEEcCC-----CCcEEEcc---CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTE--GRTLPI-----NRKQKVFP---NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~--~~~l~~-----~~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ +|+|. +..+.. +.|+.+.. ...|.|.++. .+|+|.|+|.|.|..|.. ...+.|.|
T Consensus 25 ~~G~P~p~i--~W~k~~~g~~~~~~~~~~~~r~~v~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~-~~~~~l~~ 98 (98)
T cd05870 25 AEGEPIPEI--TWKRASDGHTFSEGDKSPDGRIEVKGQHGESSLHIKDVK-LSDSGRYDCEAASRIGGH-QKSMYLDI 98 (98)
T ss_pred cccCCCCeE--EEEECCCCceeccCCcCcCceEEEeecCCeeEEEEeeCC-cCCCEEEEEEEeccCCcc-eeEEEEeC
Confidence 568999988 89993 444321 23444432 3589999998 699999999999999864 45666653
No 70
>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.
Probab=99.33 E-value=1.1e-11 Score=67.38 Aligned_cols=64 Identities=19% Similarity=0.184 Sum_probs=44.7
Q ss_pred ccccCCCCeEEEEeeCC----EEcCCC--CcEEEc----------cCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEE
Q psy14473 4 LLLFLIYSYHQSFYTEG----RTLPIN--RKQKVF----------PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTL 67 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~----~~l~~~--~~~~~~----------~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~ 67 (94)
+.|.|.|.| +|+|++ ..+... ....+. ..+.|.|.++. ..|+|.|+|.|.|..|.. ..++
T Consensus 10 v~g~P~P~i--~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~-~~sa 85 (90)
T cd04974 10 VYSDAQPHI--QWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVS-FDDAGEYTCLAGNSIGPS-HHSA 85 (90)
T ss_pred EeCCCCCeE--EEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccc-cccCcEEEEEeecccCcc-cCCE
Confidence 578999998 899963 222211 111111 12479999997 699999999999999874 5577
Q ss_pred EEEE
Q psy14473 68 EVQV 71 (94)
Q Consensus 68 ~l~v 71 (94)
.|.|
T Consensus 86 ~L~V 89 (90)
T cd04974 86 WLTV 89 (90)
T ss_pred EEEe
Confidence 7776
No 71
>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.
Probab=99.33 E-value=1.1e-11 Score=65.85 Aligned_cols=53 Identities=19% Similarity=0.382 Sum_probs=41.1
Q ss_pred EEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEE
Q psy14473 14 QSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEV 69 (94)
Q Consensus 14 i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l 69 (94)
|.|+|+|.++..+.+..+. ++.|.|.++. ..|+|.|+|.+.|..|.. ...+.|
T Consensus 25 v~W~k~g~~l~~~~~~~~~-~~~L~I~~~~-~~DsG~Y~C~a~n~~g~~-~~~~~v 77 (79)
T cd04973 25 INWTKDGVQLGENNRTRIT-GEEVQIKDAV-PRDSGLYACVTSSPSGSD-TTYFSV 77 (79)
T ss_pred EEEeeCCcCCCCCceEEEe-CCEEEECCCC-hhhCEEEEEEEeCCCCcc-cEEEEE
Confidence 4899999988766666553 5689999997 699999999999988763 334443
No 72
>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins. Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole
Probab=99.33 E-value=1.3e-11 Score=67.49 Aligned_cols=64 Identities=17% Similarity=0.201 Sum_probs=46.9
Q ss_pred ccccCCCCeEEEEeeCCEEcCCC-----CcEEEcc---CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPIN-----RKQKVFP---NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~-----~~~~~~~---~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.|.+ .|++++..+... .++.+.. .+.|.|.++. .+|+|.|+|.|.|..|.. ..++.|.|
T Consensus 25 ~~g~p~p~v--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~a~N~~G~~-~~s~~l~v 96 (96)
T cd05732 25 AEGDPIPEI--TWRRATRNFSEGDKSLDGRIVVRGHARVSSLTLKDVQ-LTDAGRYDCEASNRIGGD-QQSMYLEV 96 (96)
T ss_pred EeEcCCCcE--EEEECCcccCCCCccccceEEEeCCccEEEEEECcCC-cCcCEEeEEEEEeCCCCc-EEEEEEeC
Confidence 468898887 899988665422 2333322 2479999997 699999999999999874 55666653
No 73
>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily. Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=99.32 E-value=2.5e-11 Score=64.32 Aligned_cols=65 Identities=23% Similarity=0.273 Sum_probs=45.9
Q ss_pred CccccCCCCeEEEEeeCCE---Ec--CCC---CcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYTEGR---TL--PIN---RKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~---~l--~~~---~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.+.|.|.|.+ +|+|+.. .+ ... .+......+.|.|.++. .+|+|.|+|.+.|..|. ....+.|+|
T Consensus 9 ~~~g~P~p~v--~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~D~G~Y~C~a~N~~G~-~~~~~~l~v 81 (81)
T cd05765 9 DVTGRPPPEI--TWEKQVHGKENLIMRPNHVRGNVVVTNIGQLVIYNAQ-PQDAGLYTCTARNSGGL-LRANFPLSV 81 (81)
T ss_pred eccccCCCcE--EEEecCCCCcceeecCCcccCCEEEccccEEEEccCC-cccCEEEEEEEecCCce-EEEEEEEeC
Confidence 4678999988 8999631 11 111 12233445789999997 69999999999999987 455666654
No 74
>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.
Probab=99.32 E-value=2.3e-11 Score=66.85 Aligned_cols=61 Identities=16% Similarity=0.214 Sum_probs=42.2
Q ss_pred CCCCeEEEEeeCCEEcCCCC-cEEEc-cCCeEEEeccCCCCCCeEEEEEEecCCCce---eeeEEEEEE
Q psy14473 8 LIYSYHQSFYTEGRTLPINR-KQKVF-PNGTLIIENVERQSDQATYTCVAKTAQGYS---SRGTLEVQV 71 (94)
Q Consensus 8 P~~~i~i~W~k~~~~l~~~~-~~~~~-~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~---~~~~~~l~v 71 (94)
+.+.+ +|||++.++..+. +.... ....|.|.++. .+|+|.|+|.+.+..|.. ..+.+.|.|
T Consensus 28 ~~~~v--~WYKd~~~l~~~~~~~~~~~~~~~L~I~~v~-~~D~G~YtC~~~~~~~g~~y~vtr~~~l~v 93 (95)
T cd05897 28 TDVEL--QWYKDSVLLDKDNEKFYSLKGSTYLHIIDVS-LNDSGYYTCKLQFTHEGKKYNITRIIKLRI 93 (95)
T ss_pred CCCcE--EEccCCEECcCCCcceEecCCCCEEEEEEcC-hhhCEEEEEEEEEeeCCEEEEEEEEEEEEE
Confidence 34455 8999999987543 33332 34579999997 699999999999876442 234444544
No 75
>KOG3513|consensus
Probab=99.32 E-value=6.5e-12 Score=90.90 Aligned_cols=68 Identities=29% Similarity=0.381 Sum_probs=59.0
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
..|.|.+.+ +|.|++..+..+.|+.++.+|+|.|.++++ +|+|.|+|.|.|..|.. .....|.|..++
T Consensus 450 ~~asP~p~~--~W~k~~~~~~~~~r~~i~edGtL~I~n~t~-~DaG~YtC~A~N~~G~a-~~~~~L~Vkd~t 517 (1051)
T KOG3513|consen 450 PFASPKPKV--SWLKGGEKLLQSGRIRILEDGTLEISNVTR-SDAGKYTCVAENKLGKA-ESTGNLIVKDAT 517 (1051)
T ss_pred cCCCCcceE--EEEcCCcccccCceEEECCCCcEEecccCc-ccCcEEEEEEEcccCcc-ceEEEEEEecCc
Confidence 356777777 899998877788899999999999999995 99999999999999874 568889988777
No 76
>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2). Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.
Probab=99.31 E-value=1.6e-11 Score=66.68 Aligned_cols=64 Identities=20% Similarity=0.228 Sum_probs=44.8
Q ss_pred ccccCCCCeEEEEeeC----CEEcCCCCc--EEEcc----------CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEE
Q psy14473 4 LLLFLIYSYHQSFYTE----GRTLPINRK--QKVFP----------NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTL 67 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~----~~~l~~~~~--~~~~~----------~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~ 67 (94)
+.|.|.|.+ +|+|+ +..+..+.+ ..+.. .+.|.|.++. .+|+|.|+|.|.|..|.. ..++
T Consensus 10 ~~g~P~P~i--~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~-~~D~G~Y~C~A~N~~G~~-~~~a 85 (90)
T cd05858 10 VYSDAQPHI--QWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVT-FEDAGEYTCLAGNSIGIS-HHSA 85 (90)
T ss_pred EecCCCCEE--EEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCC-HHHCEEEEEEEEeCCCcc-cceE
Confidence 578999987 89984 333322211 11111 1479999997 699999999999999874 5577
Q ss_pred EEEE
Q psy14473 68 EVQV 71 (94)
Q Consensus 68 ~l~v 71 (94)
.|.|
T Consensus 86 ~L~V 89 (90)
T cd05858 86 WLTV 89 (90)
T ss_pred EEEE
Confidence 7766
No 77
>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins. Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.
Probab=99.25 E-value=1.9e-11 Score=67.25 Aligned_cols=56 Identities=27% Similarity=0.423 Sum_probs=43.8
Q ss_pred CccccCCCCeEEEEeeCCEEc--CCCCcEEE-ccCCeEEEeccCCCCCCeEEEEEEecCCCc
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTL--PINRKQKV-FPNGTLIIENVERQSDQATYTCVAKTAQGY 61 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l--~~~~~~~~-~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~ 61 (94)
|..|+|.+.+ .|+|++.++ ..+.|..+ ..+|.|.+.++. .+|+|.|+|.|+|..+.
T Consensus 27 pP~g~P~p~~--~W~k~~~~~~~~~d~r~~~~~~~G~L~fs~v~-~~D~g~Y~C~A~n~~~~ 85 (96)
T cd05727 27 PPPHYPDLSY--RWLLNEFPNFIPEDGRRFVSQTNGNLYIAKVE-ASDRGNYSCFVSSPSST 85 (96)
T ss_pred CCCCCCCCEE--EEEECCcccccccCCCeEEeCCCCcEEEeecC-HhhCceeEEEEEecccC
Confidence 6688998887 899998764 23344444 358999999998 69999999999997643
No 78
>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs). Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c
Probab=99.25 E-value=3.9e-11 Score=64.17 Aligned_cols=58 Identities=16% Similarity=0.184 Sum_probs=42.7
Q ss_pred ccccCCC-CeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEE
Q psy14473 4 LLLFLIY-SYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEV 69 (94)
Q Consensus 4 v~g~P~~-~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l 69 (94)
+.|.|.| .| +|+|++.++.. +.. ...+.|.|..+ .|+|.|.|.|.|..|...++.+.|
T Consensus 22 a~G~P~P~~I--~W~k~g~~l~~--~~~-~~~s~L~i~~~---~d~g~Y~C~A~N~~G~~~s~~a~~ 80 (81)
T cd05749 22 AVGPPEPVEI--LWWQGGSPLGD--PPA-PSPSVLNVPGL---NETSKFSCEAHNAKGVTTSRTGTV 80 (81)
T ss_pred eeeecCCeEE--EEEECCEECCC--CCC-CCCCEEEEccc---cCCeEEEEEEEeccCcEEeeeEEe
Confidence 5789999 68 79999998753 111 12357888765 588999999999999766555544
No 79
>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins. Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=99.22 E-value=1.2e-10 Score=64.14 Aligned_cols=63 Identities=17% Similarity=0.207 Sum_probs=45.3
Q ss_pred ccccCCCC-eEEEEeeCCEEcCCC--CcEEEccC-------CeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEE
Q psy14473 4 LLLFLIYS-YHQSFYTEGRTLPIN--RKQKVFPN-------GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEV 69 (94)
Q Consensus 4 v~g~P~~~-i~i~W~k~~~~l~~~--~~~~~~~~-------~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l 69 (94)
+.|.|.|. + .|++++..+... .++.+... ..|.|.++...+|.|.|.|.|.|..|.. ...+.|
T Consensus 25 ~~g~P~P~~v--~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~-~~~~~L 97 (98)
T cd05758 25 IFSTPPPDRI--VWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG-TAIISL 97 (98)
T ss_pred EcccCCCCEe--EEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc-cEEEEe
Confidence 56889884 6 799999887642 45655432 3799999973244899999999999874 334443
No 80
>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM). IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D
Probab=99.21 E-value=1.8e-10 Score=64.37 Aligned_cols=67 Identities=22% Similarity=0.339 Sum_probs=47.9
Q ss_pred CccccCCCCeEEEEeeCCE-----Ec--------------CCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCcee
Q psy14473 3 PLLLFLIYSYHQSFYTEGR-----TL--------------PINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSS 63 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~-----~l--------------~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~ 63 (94)
++.+.|..-..++|+|+.. .+ ....|..+..||+|.|++++ ..|+|.|+|.+.+......
T Consensus 19 ~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ngSL~I~~v~-~~D~G~Y~~~v~~~~~~~~ 97 (105)
T cd05774 19 LVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNGSLLIQNVT-QKDTGFYTLQTITTNFQVE 97 (105)
T ss_pred EecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCCcEEEecCC-cccCEEEEEEEEeCCccEE
Confidence 4677787766779999621 11 12356677889999999998 6999999999998764444
Q ss_pred eeEEEEE
Q psy14473 64 RGTLEVQ 70 (94)
Q Consensus 64 ~~~~~l~ 70 (94)
...+.|.
T Consensus 98 ~~~v~l~ 104 (105)
T cd05774 98 QATVHLQ 104 (105)
T ss_pred EEEEEEE
Confidence 4455543
No 81
>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process
Probab=99.20 E-value=8.2e-11 Score=61.87 Aligned_cols=54 Identities=17% Similarity=0.419 Sum_probs=39.6
Q ss_pred ccCCCCeEEEEeeCCEEcCCC----CcEEEc---cCCeEEEeccCCCCCCeEEEEEEecCCCce
Q psy14473 6 LFLIYSYHQSFYTEGRTLPIN----RKQKVF---PNGTLIIENVERQSDQATYTCVAKTAQGYS 62 (94)
Q Consensus 6 g~P~~~i~i~W~k~~~~l~~~----~~~~~~---~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~ 62 (94)
+.|.+.+ .|+|+++.+... .++... ..+.|.|.++. ..|+|.|+|.+.|..|..
T Consensus 10 ~~p~~~~--~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~-~~DsG~Y~C~a~N~~g~~ 70 (76)
T cd05895 10 EYPSLRF--KWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKAS-LADNGEYKCMVSSKLGND 70 (76)
T ss_pred CCCCCce--EEEECCcccccCCCCCceEEEEeCCcEEEEEECcCC-cccCEEEEEEEEeCCCce
Confidence 4566666 899999888532 122221 23579999997 699999999999998763
No 82
>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin. Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.
Probab=99.17 E-value=3.4e-10 Score=61.21 Aligned_cols=61 Identities=21% Similarity=0.290 Sum_probs=43.7
Q ss_pred CCCCeEEEEeeCCEEcCCC----CcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 8 LIYSYHQSFYTEGRTLPIN----RKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 8 P~~~i~i~W~k~~~~l~~~----~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
|.+.+ .|+|++..+... .+.... .+.|.|.++. .+|+|.|.|.+.+..+.....++.|.|.
T Consensus 23 p~~~i--~W~k~~~~~~~~~~~~~~~~~~-~~~L~I~~~~-~~D~G~Y~C~a~~~~~~~~~~~~~l~V~ 87 (89)
T cd04979 23 NLASV--VWLFQGGPLQRKEEPEERLLVT-EDGLLIRSVS-PADAGVYTCQSVEHGFKQTLATYSLNVL 87 (89)
T ss_pred CCceE--EEEECCcccccccCcCceEEEc-CCCEEEccCC-HHHCEEEEEEEecCccceeEeEEEEEEe
Confidence 55555 899998876543 233333 4569999997 6999999999998765555556666664
No 83
>KOG4222|consensus
Probab=99.14 E-value=1.1e-10 Score=84.88 Aligned_cols=82 Identities=24% Similarity=0.256 Sum_probs=65.2
Q ss_pred CccccCCCCeEEEEeeCCEEcC--CCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC-C-CC
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLP--INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN-E-KP 78 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~--~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p-~-~p 78 (94)
|-.|.|.+.+ +|.|+|+++. ...++.+...|.|+|.++. .+|+|.|.|++.|..|...+....|+|.++| . ++
T Consensus 155 pP~ghpeptv--Sw~Kdg~pl~~~~~~~~~lisgG~LlIsnvr-ksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~r 231 (1281)
T KOG4222|consen 155 PPRGHPEPTV--SWVKDGKPLDHYDVPIIALISGGNLLISNVR-KSDEGTYACVATNMVGERESIPARLSVQEKPWFWKR 231 (1281)
T ss_pred CCCCCCCCcc--eeecCCCccccccceeEEEecCCcEEEeccc-cCCCceeeeeecccccccccccceeeeccCCccccc
Confidence 5678999988 8999999987 3344555678999999997 6999999999999999988888999999988 3 44
Q ss_pred CCCCccccc
Q psy14473 79 FSGLLPKIN 87 (94)
Q Consensus 79 ~~~~~~~~~ 87 (94)
..-.+..++
T Consensus 232 p~~~~v~~g 240 (1281)
T KOG4222|consen 232 PKDLAVLVG 240 (1281)
T ss_pred cccceeecc
Confidence 343333333
No 84
>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D. Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas
Probab=99.13 E-value=4.8e-10 Score=60.71 Aligned_cols=48 Identities=19% Similarity=0.313 Sum_probs=37.7
Q ss_pred CCCCeEEEEeeCCEEcCCC-CcEEEccCCeEEEeccCCCCCCeEEEEEEecCC
Q psy14473 8 LIYSYHQSFYTEGRTLPIN-RKQKVFPNGTLIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 8 P~~~i~i~W~k~~~~l~~~-~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
|.+.+ +|++++.++..+ .++. ..++.|.|.+++ .+|+|.|+|.+.+..
T Consensus 23 ~~~~i--~W~~ng~~i~~~~~r~~-~~~~~L~I~nv~-~~DsG~Y~C~a~e~~ 71 (87)
T cd05873 23 NLARV--VWKFDGKVLTPESAKYL-LYRDGLLIFNAS-EADAGRYQCLSVEKS 71 (87)
T ss_pred CCCeE--EEEECCEECCCCCceEE-EECCcEEEeCCC-HHHCEEEEEEEEecc
Confidence 44444 899999998765 3443 456789999998 599999999999763
No 85
>KOG3513|consensus
Probab=99.12 E-value=6.7e-10 Score=80.76 Aligned_cols=66 Identities=27% Similarity=0.402 Sum_probs=54.5
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCc---EEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEec
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRK---QKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGI 74 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~---~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~ 74 (94)
+.|.|.|.+ +|+|++.++....+ ..+ .+|.|.|.+++ .+|+|.|+|.|.|..|.. ...+.|.|...
T Consensus 355 a~g~P~p~v--~WlkNg~pl~~~~r~~~~~i-~~g~L~is~v~-~~dsg~YQC~A~Nk~G~i-~anA~L~V~a~ 423 (1051)
T KOG3513|consen 355 ASGKPNPTV--KWLKNGEPLEPAERDPRYKI-DDGTLIISNVQ-ESDSGVYQCIAENKYGTI-YANAELKVLAS 423 (1051)
T ss_pred ecCCCCCce--EEeeCCeecCccCCCcceEE-eCCEEEEEecc-cccCeEEEeeeecccceE-eeeeEEEEEcc
Confidence 468899998 79999999975544 444 57899999998 699999999999999874 55888888754
No 86
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=99.11 E-value=7.3e-10 Score=69.54 Aligned_cols=51 Identities=24% Similarity=0.490 Sum_probs=40.8
Q ss_pred ccCCCCeEEEEeeCCEEcCCCCcEEEcc-CCeEEEeccCCCCCCeEEEEEEecCC
Q psy14473 6 LFLIYSYHQSFYTEGRTLPINRKQKVFP-NGTLIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 6 g~P~~~i~i~W~k~~~~l~~~~~~~~~~-~~~L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
|+|.|.+ +|+|+++.+..+.+..+.. ++.|.|.++. .+|+|.|+|.+....
T Consensus 160 ~~p~p~I--~WyKng~~l~~~~r~~~~~~~~~L~I~~V~-~~DsG~YtC~a~~~~ 211 (227)
T PHA02826 160 TFKDYTL--TWYKNGNIVLYTDRIQLRNNNSTLVIKSAT-HDDSGIYTCNLRFNK 211 (227)
T ss_pred cCCCceE--EEEECCEECCCCCCEEEeCCCCEEEECcCC-HHhCEEEEEEEEEeE
Confidence 5567776 8999999987666666543 4589999997 599999999998753
No 87
>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins. Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin
Probab=99.10 E-value=1.3e-09 Score=57.91 Aligned_cols=63 Identities=22% Similarity=0.270 Sum_probs=45.2
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEE----ccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKV----FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~----~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
+.|+|.+.+ .|+|++..+..+..... .....|.|.++. ..|+|.|.|.+.|..|. ...++.|.
T Consensus 18 ~~~~p~~~v--~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~Y~C~~~n~~g~-~~~~~~l~ 84 (85)
T cd05729 18 ASGNPRPTI--TWLKDGKPFKKEHRIGGYKVRKKKWTLILESVV-PSDSGKYTCIVENKYGS-INHTYKVD 84 (85)
T ss_pred cCCCCCCeE--EEEECCEECcccCceeEEEccCcEEEEEEeECC-cccCEEEEEEEEECCce-EEEEEEEe
Confidence 567887776 89999988764433322 112468899997 69999999999999876 34455554
No 88
>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins. Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.
Probab=99.10 E-value=3.1e-10 Score=62.34 Aligned_cols=54 Identities=20% Similarity=0.284 Sum_probs=44.8
Q ss_pred CccccCCCCeEEEEeeCCEE-cCCCCcEEEccCCeEEEeccCCCCCCe-EEEEEEecCC
Q psy14473 3 PLLLFLIYSYHQSFYTEGRT-LPINRKQKVFPNGTLIIENVERQSDQA-TYTCVAKTAQ 59 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~-l~~~~~~~~~~~~~L~i~~v~~~~D~G-~Y~C~~~n~~ 59 (94)
|..|+|.|.+ .|++++.. +..+.|+.+..+|.|.|.++. .+|.| .|.|.|.|..
T Consensus 27 pP~g~P~P~i--~W~~~~~~~i~~~~Ri~~~~~GnL~fs~v~-~~D~g~~Y~C~a~~~~ 82 (95)
T cd05845 27 PPKSAVPLRI--YWMNSDLLHITQDERVSMGQNGNLYFANVE-EQDSHPDYICHAHFPG 82 (95)
T ss_pred CCCCCCCCEE--EEECCCCccccccccEEECCCceEEEEEEe-hhhCCCCeEEEEEccc
Confidence 5789999988 89987654 344667777788999999998 69999 7999999976
No 89
>smart00408 IGc2 Immunoglobulin C-2 Type.
Probab=99.06 E-value=2.3e-09 Score=53.15 Aligned_cols=53 Identities=26% Similarity=0.435 Sum_probs=39.8
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g 60 (94)
+.+.|.+.+ .|++++..+. ........+..|.|.++. ..|+|.|+|.+.|..|
T Consensus 11 ~~~~~~~~v--~W~~~~~~~~-~~~~~~~~~~~L~i~~~~-~~d~G~Y~C~~~n~~g 63 (63)
T smart00408 11 AEGDPVPNI--TWLKDGKPLP-ESNRLSASGSTLTIKSVS-LEDSGEYTCVAENSAG 63 (63)
T ss_pred CccCCCCeE--EEEECCEECC-CCCEEecCCcEEEEeeCC-cccCEEEEEEEecCCC
Confidence 356676666 8999998876 222233456789999997 6999999999998754
No 90
>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins. Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF
Probab=99.05 E-value=1.5e-09 Score=58.04 Aligned_cols=66 Identities=23% Similarity=0.278 Sum_probs=41.4
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCC----cEEE----ccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINR----KQKV----FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~----~~~~----~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.+...+.|+++++.+.... +... .....|.|.+++ .+|+|.|+|.+.|..|.. +.+..|.|
T Consensus 10 ~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~-~~DsG~Y~C~a~n~~~~~-~~s~~v~v 83 (84)
T cd05742 10 VLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNAT-LKDSGTYTCAASSGTMDQ-KESTKVNI 83 (84)
T ss_pred EEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCC-hhhCEEEEEEEccCCCce-EEEEEEEE
Confidence 345633333448998776543211 1111 113479999997 699999999999998763 44555554
No 91
>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.
Probab=98.96 E-value=8.4e-09 Score=55.34 Aligned_cols=66 Identities=18% Similarity=0.247 Sum_probs=42.0
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCC----cEEEcc---CCeEEEeccCCCCCCeEEEEEEecCCC-ceeeeEEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINR----KQKVFP---NGTLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEVQVM 72 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~----~~~~~~---~~~L~i~~v~~~~D~G~Y~C~~~n~~g-~~~~~~~~l~v~ 72 (94)
+.|.|.+.+ .|++.++...... +..+.. ...|.|.+++ .+|+|.|.|.+.|..+ .....++.|+|.
T Consensus 10 ~~~~~~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~-~~DsG~Y~C~a~n~~~~~~~~~sv~i~V~ 83 (84)
T cd05861 10 VQGNEVVDF--SWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHAT-VEDSGTYECAAHESTQDQKAFKKVNITVH 83 (84)
T ss_pred EECCCccEE--EEEECCccCCCCceEEEEEecCCcEEEEEEEECCCC-cCCCEEEEEEEEECccCcceeEEEEEEEe
Confidence 456676666 8998765432111 111111 3479999997 6999999999998764 223556666653
No 92
>KOG4194|consensus
Probab=98.96 E-value=2.1e-09 Score=74.93 Aligned_cols=81 Identities=23% Similarity=0.398 Sum_probs=62.6
Q ss_pred ccccCCCCeEEEEeeCCEE-cCC--CCcEEEcc-CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC--CC
Q psy14473 4 LLLFLIYSYHQSFYTEGRT-LPI--NRKQKVFP-NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN--EK 77 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~-l~~--~~~~~~~~-~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p--~~ 77 (94)
..|.|.|+| .|.|+|.. .+. .+|..+.+ +..+.|.++. .+|+|.|+|.|.|..|. .+....|+|.+.| +.
T Consensus 636 AtG~P~PeI--awqkdggtdFPAA~eRRl~Vmpedd~f~Itnvk-~eD~GiYtC~A~n~AG~-isanAtL~V~e~p~f~~ 711 (873)
T KOG4194|consen 636 ATGHPRPEI--AWQKDGGTDFPAARERRLHVMPEDDVFFITNVK-IEDQGIYTCTAQNVAGQ-ISANATLTVLETPSFSI 711 (873)
T ss_pred ccCCCCcce--eehhcCCCCCchhhhheeeecCCCCEEEEeccc-ccccceeEEeeeccccc-eeeceEEEEecCCcccc
Confidence 468999999 89997665 443 34556654 4578999997 69999999999999987 5778899999887 46
Q ss_pred CCCCCcccccc
Q psy14473 78 PFSGLLPKINK 88 (94)
Q Consensus 78 p~~~~~~~~~~ 88 (94)
|.+...++.++
T Consensus 712 PL~~~~V~~ge 722 (873)
T KOG4194|consen 712 PLEDQLVVVGE 722 (873)
T ss_pred cccceEEEecc
Confidence 77766655543
No 93
>KOG4221|consensus
Probab=98.95 E-value=3.9e-09 Score=77.54 Aligned_cols=68 Identities=21% Similarity=0.332 Sum_probs=55.0
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCC-cEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINR-KQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~-~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
+.|.|.|.+ .|.||+..+..+. |+.+...++|+|++++ ..|+|.|+|.|.|..- ...+..+|+|..+|
T Consensus 261 vs~~p~p~v--~Wlrng~~i~~ds~rivl~g~~slliS~a~-~~dSg~YtC~Atn~~D-~idasaev~V~a~P 329 (1381)
T KOG4221|consen 261 VSGVPKPSV--KWLRNGEKISVDSYRIVLVGGSSLLISNAT-DDDSGKYTCRATNTND-SIDASAEVTVLAPP 329 (1381)
T ss_pred ecCCCCCce--EEeeCCeeeeecceEEEEecccceEEeccc-cccCceEEEEecCCCc-ccccceEEEEEcCC
Confidence 568899998 7999999987554 4455667899999997 6999999999999543 24567889999888
No 94
>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin. Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula
Probab=98.95 E-value=1.2e-08 Score=55.63 Aligned_cols=63 Identities=14% Similarity=0.193 Sum_probs=40.9
Q ss_pred ccCCCCeEEEEeeCC--EEc----CCCCcEEEccCCeEEEeccCCCCCCeEEEEEEec-CCCceeeeEEEEEEEe
Q psy14473 6 LFLIYSYHQSFYTEG--RTL----PINRKQKVFPNGTLIIENVERQSDQATYTCVAKT-AQGYSSRGTLEVQVMG 73 (94)
Q Consensus 6 g~P~~~i~i~W~k~~--~~l----~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n-~~g~~~~~~~~l~v~~ 73 (94)
+.|.+.+ +|||.. ... ....+... .++.|.|.++. .+|+|.|+|.+.+ ..+. ....+.|.|..
T Consensus 21 ~~p~p~v--~Wykq~~g~~~~~~~~~~~r~~~-~~~~L~I~~~~-~~DsG~Y~C~a~~~~~~~-~~~~~~l~v~~ 90 (91)
T cd05871 21 KSPQASV--KWLFQRGGDQRKEEVKTEERLIH-TERGLLLRSLQ-RSDAGVYTCTAVEHSFSQ-TLAKYTLHVIE 90 (91)
T ss_pred CCCCceE--EEEEECCCCCccccccccccEEE-ecCeEEEeeCC-hhHCEEEEEEEEccCCeE-EEEEEEEEEec
Confidence 3566666 899832 121 12234433 45679999997 6999999999984 5543 34477777653
No 95
>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.94 E-value=2.6e-09 Score=57.27 Aligned_cols=53 Identities=21% Similarity=0.366 Sum_probs=40.2
Q ss_pred EEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 13 HQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 13 ~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.+.|+|++..+.. ...+..|.|.++. .+|+|.|+|.+.+..+...+..+.|+|
T Consensus 31 ~~~w~k~g~~~~~-----~~~~~~l~I~~~~-~~dsG~Y~C~~~~~~~~~~s~~~~i~~ 83 (83)
T cd05753 31 KVTYYRDGKAKKY-----SHSNSNLSIPQAT-LSDSGSYHCSGIIGSYDYSSEPVSITV 83 (83)
T ss_pred EEEEEECCeEccc-----cCCCceEEECccC-HHHCEEEEEEEEeCCceecCCCEEEEC
Confidence 3489999976642 1134689999997 699999999999998776666666654
No 96
>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.
Probab=98.90 E-value=1.2e-08 Score=54.34 Aligned_cols=54 Identities=17% Similarity=0.105 Sum_probs=39.1
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCcEE-----EccCCeEEEeccCCCCCCeEEEEEEecCCCc
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRKQK-----VFPNGTLIIENVERQSDQATYTCVAKTAQGY 61 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~~~-----~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~ 61 (94)
.|+|.+.| +|||++++|....... ....++|.+.... .+|.+.|+|.|.|..+.
T Consensus 10 ~skP~a~i--~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~-~Ddg~~~~C~A~n~a~~ 68 (80)
T cd05885 10 RSKPAATL--RWYRDRKELKGVISQQENGKTVSVSNTIRFPVDR-KDDGAILSCEASHPALV 68 (80)
T ss_pred CccCCCeE--EEEECCEECCCCcccccCCceEEEEEEEEEEeee-ccCCcEEEEEEEChhhC
Confidence 57899988 8999999996432111 1112368887775 58899999999998765
No 97
>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins. Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.
Probab=98.90 E-value=5.7e-09 Score=55.36 Aligned_cols=55 Identities=15% Similarity=0.284 Sum_probs=38.0
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.+. .+.|+|++..+.. .++.|.|.++ . +|+|.|+|.+.|.. .+..+.|+|
T Consensus 24 ~~~~p~~~-~~~W~kng~~l~~-------~~~~l~i~~~-~-~dsG~Y~C~a~~~~---~S~~v~l~V 78 (78)
T cd05752 24 GFNSPEQN-STQWYHNGKLLET-------TTNSYRIRAA-N-NDSGEYRCQTQGSS---LSDPVHLEV 78 (78)
T ss_pred CCCCCCCc-cEEEEECCEEeec-------cCCeEEEeec-c-cCCEEeEEECCCCc---CCCCEEEeC
Confidence 34556532 2389999987621 3468999998 5 99999999999853 344555543
No 98
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.90 E-value=2e-08 Score=66.05 Aligned_cols=62 Identities=21% Similarity=0.314 Sum_probs=44.3
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCcEEEccCC-eEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEe
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRKQKVFPNG-TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~-~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~ 73 (94)
.|+|.+++ +|+|++... .+.....++ .|.|.++. .+|+|.|+|.+.|..|.. ...+.|+|..
T Consensus 56 ~g~p~~~i--~W~K~g~~~---~~~~~~~~g~~l~i~~~~-~~DsG~Y~C~a~N~~g~~-~~s~~L~V~~ 118 (326)
T PHA02785 56 SGYNILDI--LWEKRGADN---DRIIPIDNGSNMLILNPT-QSDSGIYICITKNETYCD-MMSLNLTIVS 118 (326)
T ss_pred cCCCCceE--EEEECCCcc---ceEEEccCCceEEEcccC-cccCeEEEEEEECCCcce-EEEEEEEEEe
Confidence 68887877 899987432 122333344 48888997 699999999999988653 4566777654
No 99
>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins. Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.
Probab=98.89 E-value=8.4e-09 Score=55.21 Aligned_cols=50 Identities=30% Similarity=0.407 Sum_probs=37.7
Q ss_pred cCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCce
Q psy14473 7 FLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYS 62 (94)
Q Consensus 7 ~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~ 62 (94)
.|.+.+ .|++++..+... ....++.|.|.++. .+|+|.|.|.+.|..|..
T Consensus 29 ~~~~~i--~W~~~~~~~~~~---~~~~~~~L~I~~v~-~~DsG~Y~C~a~n~~g~~ 78 (85)
T cd05754 29 SPAYTL--VWTRVGGGLPSR---AMDFNGILTIRNVQ-LSDAGTYVCTGSNMLDTD 78 (85)
T ss_pred CCCcEE--EEEECCCcCCCc---ccccCCEEEECCCC-HHHCEEEEEEEeccCCeE
Confidence 455555 899988665332 12246799999997 699999999999998764
No 100
>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge
Probab=98.88 E-value=1.6e-08 Score=54.51 Aligned_cols=66 Identities=26% Similarity=0.254 Sum_probs=42.4
Q ss_pred cccCCCCeEEEEeeCCEEcCC----CC-cEEE----ccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPI----NR-KQKV----FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~----~~-~~~~----~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
.|.+.+.+.+.|...++.+.. .. +... .....|.|.++. .+|+|.|+|.+.|..|. ......|.|.
T Consensus 11 ~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~-~~DsG~Y~C~a~n~~~~-~~~~t~~~V~ 85 (86)
T cd05862 11 RTELNVGIDFQWDYPGKKEQRAKSVSENRRSLQEHTELSSTLTIENVT-LSDLGRYTCTASSGQMI-AKNSTIVIVH 85 (86)
T ss_pred EeCCCCcEEEEEEcCCcccccceecccccccccccceeeeEEEEecCC-cccCEEEEEEEeecceE-ecccEEEEEe
Confidence 345666667789886654311 10 1111 123579999997 69999999999998764 3445556554
No 101
>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of
Probab=98.86 E-value=2.2e-08 Score=55.69 Aligned_cols=56 Identities=13% Similarity=0.201 Sum_probs=37.7
Q ss_pred EEEEeeCCEEcCCCC-----cEEE-ccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 13 HQSFYTEGRTLPINR-----KQKV-FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 13 ~i~W~k~~~~l~~~~-----~~~~-~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
.+.|+|++..+.... ..++ ..+..|.|..+. .+|+|.|+|++.|.... ....+.|+
T Consensus 42 ~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~-~eDSG~Y~C~~rN~t~C-~~~~i~l~ 103 (104)
T cd05896 42 SLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAE-LQDSGLYTCVLRNSTYC-MKVSMSLT 103 (104)
T ss_pred eEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCC-hhhCeEEEEEECCCCcc-eEEEEEEE
Confidence 458999975543322 1133 346689999997 79999999999998643 33344444
No 102
>PHA02785 IL-beta-binding protein; Provisional
Probab=98.84 E-value=2.6e-08 Score=65.46 Aligned_cols=62 Identities=26% Similarity=0.341 Sum_probs=43.4
Q ss_pred ccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCcee---eeEEEEEEE
Q psy14473 6 LFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSS---RGTLEVQVM 72 (94)
Q Consensus 6 g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~---~~~~~l~v~ 72 (94)
+.|.+.+ +|++++. + ...|.....++.|.|.+++ .+|+|.|+|.+.|..|... ...+.|.|.
T Consensus 152 ~~~~~~i--~W~k~~~-~-~~~r~~~~~~~~L~i~~v~-~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~ 216 (326)
T PHA02785 152 SNVNADI--IWSGHRR-L-RNKRLKQRTPGIITIEDVR-KNDAGYYTCVLKYIYGDKTYNVTRIVKLEVR 216 (326)
T ss_pred CCCCceE--EEccCCc-c-CCcceEecCCCeEEEeecC-hhhCeEEEEEEEeccCCEEEeEEEEEEEEEe
Confidence 4566666 8998653 3 3445555667899999998 5999999999999876532 223455554
No 103
>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format
Probab=98.84 E-value=2.2e-08 Score=55.03 Aligned_cols=52 Identities=19% Similarity=0.202 Sum_probs=36.9
Q ss_pred ccccCCCCeEEEEeeCCEEc--------CCCCcEEEc----cCCeEEEeccCCCCCCeEEEEEEecC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTL--------PINRKQKVF----PNGTLIIENVERQSDQATYTCVAKTA 58 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l--------~~~~~~~~~----~~~~L~i~~v~~~~D~G~Y~C~~~n~ 58 (94)
+.|.|.+.+ .|+|++..+ ..+.|+.+. ...+|.|.++. .+|+|.|+|.+...
T Consensus 21 v~g~~~~~v--~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~-~~D~G~YtC~~~t~ 84 (95)
T cd05882 21 VKEHDNSSL--QWSNTAQQTLYFGEKRALRDNRIQLVKSTPTELIISISNVQ-LSDEGEYTCSIFTM 84 (95)
T ss_pred EeCCCCCeE--EEeccCccEEEeCCeEEEeCCeEEEEeCCCceEEEEECCCC-cccCEEEEEEEEee
Confidence 467787777 899876532 123344432 13589999998 69999999999874
No 104
>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.
Probab=98.82 E-value=2.2e-08 Score=54.94 Aligned_cols=63 Identities=16% Similarity=0.111 Sum_probs=40.5
Q ss_pred ccccCCCCeEEEEeeCCE--------EcCCCCcEEEc----cCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 4 LLLFLIYSYHQSFYTEGR--------TLPINRKQKVF----PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~--------~l~~~~~~~~~----~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.|.|.+.+ .|++.+. ....+.|+.+. ...+|.|.++. .+|+|.|+|.+.+..+. .....|.|
T Consensus 21 ~~~~p~~~v--~W~~~~~~~l~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~-~~DsG~Y~C~~~t~~~~--~~~~~l~v 95 (95)
T cd07701 21 VDQNDNTSL--QWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISISDVS-LSDEGQYTCSLFTMPVK--TSKAYLTV 95 (95)
T ss_pred EecCCceEE--EEeCCCCeEEEEcCcccccCCCEEEEECCCCcEEEEECcCC-cccCEEEEEEeEeecCc--cEEEEEEC
Confidence 456777776 8986322 12233455442 23579999997 69999999999985433 34455543
No 105
>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B. Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.
Probab=98.78 E-value=9.3e-08 Score=51.54 Aligned_cols=44 Identities=20% Similarity=0.287 Sum_probs=34.1
Q ss_pred CCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEe
Q psy14473 9 IYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAK 56 (94)
Q Consensus 9 ~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~ 56 (94)
...+ .|++++..+..+.+...... .|.|..+. .+|+|.|.|.+.
T Consensus 24 ~A~v--~W~~ng~~l~~~~r~~~~~~-GLlI~~~~-~~dsG~Y~C~s~ 67 (85)
T cd05872 24 LASP--VWLFNGTPLNAQFSYRVGTD-GLLILVTS-PEHSGTYRCYSE 67 (85)
T ss_pred CccE--EEEECCcccCCCcceEEeCC-CCEEEECC-HhhCEEEEEEEe
Confidence 3455 89999999876666655544 47788887 699999999987
No 106
>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins. Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf
Probab=98.78 E-value=1.1e-07 Score=51.38 Aligned_cols=43 Identities=26% Similarity=0.586 Sum_probs=32.9
Q ss_pred CcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 27 RKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 27 ~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
.|..+..+++|.|.++. .+|+|.|.|.+....+......+.|.
T Consensus 49 ~R~~~~~~~sL~I~~l~-~~DsG~Y~c~v~~~~~~~~~~~~~l~ 91 (92)
T cd05741 49 GRETIYPNGSLLIQNLT-KEDSGTYTLQIISTNGVTENAKFFLR 91 (92)
T ss_pred CeEEEcCCceEEEccCC-chhcEEEEEEEEcCCCcEEEEEEEEE
Confidence 34556667899999997 69999999999987766555555553
No 107
>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A ....
Probab=98.76 E-value=2.9e-08 Score=51.84 Aligned_cols=57 Identities=25% Similarity=0.374 Sum_probs=39.7
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.|.|...+ .|++++..+... .+.+.+..+. .+|.|.|+|.+.+..+...+..+.|+|
T Consensus 24 ~~~p~~~~--~w~~~~~~~~~~-------~~~~~~~~~~-~~~~g~y~C~~~~~~~~~~s~~~~v~V 80 (80)
T PF13895_consen 24 SGNPPPQV--QWYKNGSPINSS-------QNGLFIPNVS-PEDSGNYTCRASNGSGSNTSTSVNVTV 80 (80)
T ss_dssp ESSSSSEE--EEEETTEEEEEE-------SSEEEESSEE-GGGTEEEEEEEEETTEEEEEEEEEEEE
T ss_pred Ecccceee--eeeeeeeeeeee-------eeeeeeeeec-cccCEEEEEEEEeCCCCeEeeeEEeeC
Confidence 36666555 899998776421 1227777887 599999999999976655555666554
No 108
>smart00409 IG Immunoglobulin.
Probab=98.75 E-value=2.5e-07 Score=48.13 Aligned_cols=57 Identities=33% Similarity=0.525 Sum_probs=40.9
Q ss_pred EEEEeeC-CEEcCCCCcEEEccC---CeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 13 HQSFYTE-GRTLPINRKQKVFPN---GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 13 ~i~W~k~-~~~l~~~~~~~~~~~---~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.+.|+++ +..+....+...... ..|.|.++. ..|+|.|.|.+.+..+.... .+.|.|
T Consensus 25 ~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~v~~~~~~~~~-~~~l~V 85 (86)
T smart00409 25 EVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVT-PEDSGTYTCAATNSSGSASS-TTTLTV 85 (86)
T ss_pred eEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeec-cccCeEEEEEEEcCCCeEEE-EEEEEE
Confidence 3489998 887764555555333 589999997 69999999999987765433 355544
No 109
>smart00410 IG_like Immunoglobulin like. IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.
Probab=98.75 E-value=2.5e-07 Score=48.13 Aligned_cols=57 Identities=33% Similarity=0.525 Sum_probs=40.9
Q ss_pred EEEEeeC-CEEcCCCCcEEEccC---CeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 13 HQSFYTE-GRTLPINRKQKVFPN---GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 13 ~i~W~k~-~~~l~~~~~~~~~~~---~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.+.|+++ +..+....+...... ..|.|.++. ..|+|.|.|.+.+..+.... .+.|.|
T Consensus 25 ~~~W~~~~~~~v~~~~~~~~~~~~~~~~l~i~~~~-~~d~G~Y~C~v~~~~~~~~~-~~~l~V 85 (86)
T smart00410 25 EVTWYKQGGKLLAESGRFSVSRSGSNSTLTISNVT-PEDSGTYTCAATNSSGSASS-TTTLTV 85 (86)
T ss_pred eEEEEECCCEEcCCCCcEEEEEcCCeeEEEEEeec-cccCeEEEEEEEcCCCeEEE-EEEEEE
Confidence 3489998 887764555555333 589999997 69999999999987765433 355544
No 110
>PHA02826 IL-1 receptor-like protein; Provisional
Probab=98.70 E-value=1.6e-07 Score=59.08 Aligned_cols=62 Identities=16% Similarity=0.197 Sum_probs=41.3
Q ss_pred CeEEEEeeCCEEc--C-CCCc--------EE-EccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEec
Q psy14473 11 SYHQSFYTEGRTL--P-INRK--------QK-VFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGI 74 (94)
Q Consensus 11 ~i~i~W~k~~~~l--~-~~~~--------~~-~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~ 74 (94)
..+|.|+|++... . .+.+ .. ...+++|.|.++. .+|+|.|+|.+.|..+. ....+.|.|..+
T Consensus 62 ~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~~r~~~L~I~~v~-~~DsG~Y~C~a~N~~~~-~~~~i~L~V~~~ 135 (227)
T PHA02826 62 SYNVTWSKTDSLAFVRDSGARTKIKKITHNEIGDRSENLWIGNVI-NIDEGIYICTISSGNIC-EESTIRLTFDSG 135 (227)
T ss_pred CccEEEEeCCeEEEEEcCCCccccccccccceecCCCeEEECCCC-hHHCEEEEEEEEECCcc-eEEEEEEEEecC
Confidence 4456899987542 1 1111 01 1225689999998 69999999999997765 455666776543
No 111
>KOG4221|consensus
Probab=98.67 E-value=9.7e-08 Score=70.53 Aligned_cols=67 Identities=21% Similarity=0.414 Sum_probs=56.2
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEe
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~ 73 (94)
+.+.|.+.+ .|.|+..++..+.|+.++.+|.|.|.+++ .+|.|.|.|.+.++.....+....|+|..
T Consensus 164 vn~e~~p~i--~w~kn~~pl~~~~r~i~lpsG~L~I~~~q-p~d~g~yrc~vt~g~~~r~S~~a~ltv~s 230 (1381)
T KOG4221|consen 164 VNAEPVPTI--MWLKNDQPLPLDSRVIVLPSGALEISGLQ-PSDTGEYRCVVTGGASQRTSNEAELTVLS 230 (1381)
T ss_pred EcCccCcee--EEecccccccCCCcEEEcCCCcEEecccc-cCCCceEEEEEecCCcCCccceeEEEecC
Confidence 455667755 89999998988888889999999999998 59999999999998766566677888773
No 112
>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.
Probab=98.64 E-value=3.4e-07 Score=48.61 Aligned_cols=63 Identities=16% Similarity=0.238 Sum_probs=37.7
Q ss_pred cc-cCCCCeEEEEeeCCEEcCCCCc-EEEccCC-------eEEEeccCCCCCCeEEEEEEecCCCce-eeeEEEEE
Q psy14473 5 LL-FLIYSYHQSFYTEGRTLPINRK-QKVFPNG-------TLIIENVERQSDQATYTCVAKTAQGYS-SRGTLEVQ 70 (94)
Q Consensus 5 ~g-~P~~~i~i~W~k~~~~l~~~~~-~~~~~~~-------~L~i~~v~~~~D~G~Y~C~~~n~~g~~-~~~~~~l~ 70 (94)
.| +|.+.+ +|+|+++.+..... .....++ .|.+.... ..|.|.|+|.+.|..... ...++.|.
T Consensus 9 ~g~~P~~~v--~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~~~~~y~C~a~n~~l~~~~~~s~~l~ 81 (82)
T cd05759 9 RGAKPAAEI--IWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSD-HDTGRTFTCRARNEALPTGKETSVTLD 81 (82)
T ss_pred eCccCCCEE--EEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCce-ecCCCEEEEEEcCccCCCCcEEEEEEc
Confidence 44 577766 89999998754321 1222222 45566554 467889999999865322 23344443
No 113
>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.
Probab=98.58 E-value=7.5e-07 Score=49.23 Aligned_cols=62 Identities=19% Similarity=0.195 Sum_probs=42.4
Q ss_pred cccCCCCeEEEEeeCCEEcCC--CCcEEEcc-------CCeEEEeccCCCCC-CeEEEEEEecCCCceeeeEEEE
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPI--NRKQKVFP-------NGTLIIENVERQSD-QATYTCVAKTAQGYSSRGTLEV 69 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~--~~~~~~~~-------~~~L~i~~v~~~~D-~G~Y~C~~~n~~g~~~~~~~~l 69 (94)
.+.|.|. .|.|..++..+.. +.|+.+.. ...|.|.++.+ .| .|.|.|.|.|..|.. ...+.|
T Consensus 26 ~s~P~P~-~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~-~d~~g~Y~C~a~N~~G~d-~~~i~L 97 (98)
T cd05898 26 GSTPPPD-RIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIME-ADFQTHYNCTAWNSFGSG-TAIIQL 97 (98)
T ss_pred ccCCCCc-EEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCcc-ccCCcEEEEEEEeCCccc-eEEEEe
Confidence 4667765 3478887776643 35665532 23699999964 56 799999999999875 445544
No 114
>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs.; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....
Probab=98.54 E-value=5e-08 Score=49.26 Aligned_cols=42 Identities=33% Similarity=0.534 Sum_probs=28.9
Q ss_pred EEEEeeCCEEcCCCCcEEEccC-Ce----EEEeccCCCCCCeEEEEEE
Q psy14473 13 HQSFYTEGRTLPINRKQKVFPN-GT----LIIENVERQSDQATYTCVA 55 (94)
Q Consensus 13 ~i~W~k~~~~l~~~~~~~~~~~-~~----L~i~~v~~~~D~G~Y~C~~ 55 (94)
.+.|++++..+..........+ .. |.|.++. .+|+|.|+|.|
T Consensus 18 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~v 64 (64)
T PF00047_consen 18 TVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVT-PEDSGTYTCVV 64 (64)
T ss_dssp EEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCT-GGGTEEEEEEE
T ss_pred EEEEEECCccccCcceeEeecccceeeeEEEEccCC-HHHCEEEEEEC
Confidence 4489998876544333332222 22 9999998 59999999986
No 115
>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively). Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form
Probab=98.51 E-value=1e-06 Score=48.04 Aligned_cols=61 Identities=18% Similarity=0.130 Sum_probs=37.0
Q ss_pred cccCCCCeEEEEeeCCEEc--------CCCCcEEEc----cCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 5 LLFLIYSYHQSFYTEGRTL--------PINRKQKVF----PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l--------~~~~~~~~~----~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
.+.+.+.+ .|++.+..+ ..+.|+.+. ....|.|.+++ .+|+|.|+|.+.+.... ...+.|+
T Consensus 22 ~~~~~~~v--~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v~-~~DsG~Y~C~~~~~~~~--~~~~~~~ 94 (95)
T cd05717 22 KNNDNSSL--QWSNPNQQTLYFNDKRALRDNRIQLVNFSANELSISISNVS-LSDEGRYTCSLYTMPVQ--TAKATVT 94 (95)
T ss_pred CCCCCceE--EEeCCCCcEEEeccccccccCcEEEEcCCCCeeEEEEccCC-cccCEEEEEEEecCCCc--eEEEEEE
Confidence 45555555 798632211 122455442 23479999998 69999999999976532 3344444
No 116
>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).
Probab=98.50 E-value=1.3e-06 Score=47.95 Aligned_cols=35 Identities=37% Similarity=0.554 Sum_probs=27.9
Q ss_pred CeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 35 GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 35 ~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.+|.|.+++ .+|+|.|.|.+.|..+. ....+.|+|
T Consensus 65 ~sL~I~~v~-~~D~G~Y~C~v~~~~~~-~~~~i~l~v 99 (100)
T cd05713 65 VALRIHNVR-ASDEGLYTCFFQSDGFY-EEATVELKV 99 (100)
T ss_pred EEEEEEcCC-hhhCEEEEEEEecCCcE-EEEEEEEEE
Confidence 479999997 69999999999987654 455666655
No 117
>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c
Probab=98.43 E-value=2.5e-06 Score=46.51 Aligned_cols=36 Identities=28% Similarity=0.475 Sum_probs=27.5
Q ss_pred CCeEEEeccCCCCCCeEEEEEEec-CCCceeeeEEEEEE
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKT-AQGYSSRGTLEVQV 71 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n-~~g~~~~~~~~l~v 71 (94)
+.+|.|.+++ .+|+|.|.|.+.+ ..|. ....+.|.|
T Consensus 61 ~~sL~I~~v~-~~D~G~Y~C~v~~~~~g~-~~~~~~l~V 97 (98)
T cd05718 61 DATISISNLR-LEDEGNYICEFATFPQGN-RQKVTTLTV 97 (98)
T ss_pred ceEEEEccCC-cccCEEEEEEEEeCCCCc-EEEEEEEEe
Confidence 4689999997 6999999999875 4444 455666665
No 118
>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.
Probab=98.42 E-value=3.2e-06 Score=46.89 Aligned_cols=65 Identities=17% Similarity=0.148 Sum_probs=44.3
Q ss_pred ccccCCCC-eEEEEeeCCEEcCCCCc--EEEc--c----CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 4 LLLFLIYS-YHQSFYTEGRTLPINRK--QKVF--P----NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 4 v~g~P~~~-i~i~W~k~~~~l~~~~~--~~~~--~----~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
++.+|.|. + .|.+++..+..... .... . ...|.+.++. .+|.|.|+|.+.|.... .+.++.|.|.
T Consensus 27 ieAYP~p~~~--~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk-~~E~G~YTf~a~N~~~~-~s~tF~l~v~ 100 (101)
T cd05860 27 YEAYPKPEHQ--QWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLK-GTEGGTYTFLVSNSDAS-ASVTFNVYVN 100 (101)
T ss_pred EEeCCCCeee--EEEcCCcccCccccceeEEeccCceEEEEEEEEeecC-hhhCcEEEEEEECCCCe-EEEEEEEEEe
Confidence 57788886 5 79998876643222 1111 1 1368999996 69999999999998754 4456666553
No 119
>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0). Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.
Probab=98.40 E-value=3.1e-06 Score=48.12 Aligned_cols=27 Identities=30% Similarity=0.700 Sum_probs=23.5
Q ss_pred cCCeEEEeccCCCCCCeEEEEEEecCCC
Q psy14473 33 PNGTLIIENVERQSDQATYTCVAKTAQG 60 (94)
Q Consensus 33 ~~~~L~i~~v~~~~D~G~Y~C~~~n~~g 60 (94)
.+.+|.|.+++ .+|+|.|+|.+.|..+
T Consensus 78 ~daSI~I~nv~-~sD~G~Y~C~v~n~p~ 104 (116)
T cd05879 78 KDGSIVIHNLD-YTDNGTFTCDVKNPPD 104 (116)
T ss_pred CeeEEEEccCC-cccCEEEEEEEEcCCC
Confidence 45689999997 7999999999998764
No 120
>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is
Probab=98.36 E-value=2.1e-06 Score=47.55 Aligned_cols=36 Identities=28% Similarity=0.550 Sum_probs=29.4
Q ss_pred CCeEEEeccCCCCCCeEEEEEEec-CCCceeeeEEEEEE
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKT-AQGYSSRGTLEVQV 71 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n-~~g~~~~~~~~l~v 71 (94)
+++|.|.+++ .+|+|.|.|.+.+ +.|. .+..+.|+|
T Consensus 62 daSi~i~nl~-~~D~G~Y~C~v~t~P~g~-~~~~~~L~V 98 (99)
T cd05886 62 DGTISLSRLE-LEDEGVYICEFATFPTGN-RESQLNLTV 98 (99)
T ss_pred cceEEEcCCc-cccCEEEEEEEEeCCCCC-eEEEEEEEE
Confidence 5799999997 7999999999998 4554 566777776
No 121
>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.
Probab=98.31 E-value=5.6e-06 Score=44.31 Aligned_cols=66 Identities=8% Similarity=0.123 Sum_probs=41.2
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCcEE-EccC-----CeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEe
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRKQK-VFPN-----GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~~~-~~~~-----~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~ 73 (94)
.+.|...| +|+|+++++....... .... .+|.+..- +.+|...|+|.|.|..-........|.|..
T Consensus 10 gSkP~A~I--~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~-~eDdG~~~~C~a~~~~l~~~~~~~~L~V~y 81 (82)
T cd05883 10 ASKPAATI--RWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVT-KEDDGVPVICLVDHPAVKDLQTQRYLEVQY 81 (82)
T ss_pred CCCCCCEE--EEEECCEECcCcccceeccCCCcEEEEEEEEECc-hhhCCCEEEEEEcCcccCCceeeEEEEEEE
Confidence 35788888 8999999986532211 1111 24555544 335566899999987533345566777654
No 122
>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins. Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),
Probab=98.25 E-value=3e-06 Score=45.96 Aligned_cols=58 Identities=17% Similarity=0.363 Sum_probs=35.5
Q ss_pred EEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCC-C-ceeeeEEEEEE
Q psy14473 13 HQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQ-G-YSSRGTLEVQV 71 (94)
Q Consensus 13 ~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~-g-~~~~~~~~l~v 71 (94)
.+.|+|+|..............+.+.|.++. .+|+|.|+|...+.. + +..+..+.|.|
T Consensus 31 ~f~l~k~g~~~~~~~~~~~~~~~~f~i~~v~-~~~~G~Y~C~~~~~~~~~S~~Sd~lel~V 90 (91)
T cd05751 31 EYRLYREGSTFAVKKPPEPQNKAKFFIPSMK-REHAGRYRCYYRSGVALWSEPSDPLELVV 90 (91)
T ss_pred EEEEEECCCCccccccCCCceeEEEEccCCC-hhHCEEEEEEEECCCCccCCCCCcEEEEe
Confidence 3478998875432111011124579999998 599999999998862 2 12344455554
No 123
>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins. Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult
Probab=98.24 E-value=5e-06 Score=45.90 Aligned_cols=36 Identities=33% Similarity=0.574 Sum_probs=28.6
Q ss_pred CCeEEEeccCCCCCCeEEEEEEec-CCCceeeeEEEEEE
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKT-AQGYSSRGTLEVQV 71 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n-~~g~~~~~~~~l~v 71 (94)
+.+|.|.+++ .+|+|.|.|.+.+ +.|. ....+.|+|
T Consensus 63 ~~sL~I~nv~-~sD~GtY~C~v~~~p~g~-~~~~~~L~V 99 (100)
T cd05888 63 DGALILRNAV-QADEGKYKCRVITFPAGN-FEAELVLTV 99 (100)
T ss_pred ceEEEEecCc-cccceEEEEEEEeCCCCC-eeeEEEEEe
Confidence 5689999997 6999999999987 4444 466777766
No 124
>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region
Probab=98.22 E-value=6.5e-06 Score=45.18 Aligned_cols=37 Identities=19% Similarity=0.355 Sum_probs=30.7
Q ss_pred CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.+|.|.+++ .+|+|.|.|.+.+..|......+.|.|
T Consensus 60 ~~sL~I~~~~-~~DsG~Y~c~v~~~~~~~~~~~f~L~v 96 (97)
T cd05775 60 DYSLQISNLK-MEDAGSYRAEINTKNGVTITKEFTLHI 96 (97)
T ss_pred ceeEEECCCc-hHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence 4789999997 699999999999877776666777765
No 125
>KOG4222|consensus
Probab=98.20 E-value=2.4e-06 Score=63.20 Aligned_cols=67 Identities=19% Similarity=0.242 Sum_probs=54.0
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEEEc-cCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQKVF-PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~~~-~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
|.|.|.|.+ .|.|++..++.. |+.+. .+.+|.|.+++ ..|+|.|.|.+.|..|. ......++|..+|
T Consensus 249 v~GdP~P~V--rwkk~~~~~P~~-ry~i~~d~qtl~i~r~t-p~deg~y~C~a~n~vG~-l~asa~ltV~apP 316 (1281)
T KOG4222|consen 249 VGGDPQPTV--RWKKDDPSLPRS-RYSILDDTQTLRIDRVT-PTDEGTYVCPAENLVGG-LEASATLTVQAPP 316 (1281)
T ss_pred cCCCCCCce--eeeccCCCCCcc-ceeeeeccccccccccC-CCcccceeeeccccccc-cccccceEEecCc
Confidence 678899988 788877766543 55554 44899999998 59999999999999986 4567788999888
No 126
>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins. Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also
Probab=98.17 E-value=9.8e-06 Score=44.61 Aligned_cols=36 Identities=36% Similarity=0.562 Sum_probs=28.4
Q ss_pred CCeEEEeccCCCCCCeEEEEEEec-CCCceeeeEEEEEE
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKT-AQGYSSRGTLEVQV 71 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n-~~g~~~~~~~~l~v 71 (94)
+.+|.|.+++ .+|+|.|.|.+.+ +.|. .+.+..|+|
T Consensus 59 d~sl~i~nv~-~~D~G~Y~C~v~tfP~G~-~~~~~~l~~ 95 (96)
T cd05887 59 DATIMLENVG-FSDIGVYICKAVTFPLGN-TQSSTTVTV 95 (96)
T ss_pred ccEEEEeCCC-ccccEEEEEEEEeCCCCC-eeEEEEEEE
Confidence 6799999998 6999999999865 4554 456677765
No 127
>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.15 E-value=3.5e-05 Score=43.55 Aligned_cols=37 Identities=32% Similarity=0.436 Sum_probs=28.5
Q ss_pred CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
+.+|.|.++. .+|+|.|.|.+.++... ....+.|.|.
T Consensus 73 ~asL~I~nl~-~sDsG~Y~C~V~~g~~~-~~~~v~l~v~ 109 (112)
T cd05900 73 DATLEITELR-SNDSGTYRCEVMHGIED-NYDTVEVQVK 109 (112)
T ss_pred CcEEEEeecc-cccCEEEEEEEecCCCC-ceeEEEEEEE
Confidence 5689999997 69999999999977543 3445666654
No 128
>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins. Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.
Probab=98.14 E-value=9.1e-06 Score=45.07 Aligned_cols=37 Identities=22% Similarity=0.438 Sum_probs=30.3
Q ss_pred CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
+.+|.|.+++ .+|+|.|.|.+.+..+. ....+.|.|.
T Consensus 67 ~~sL~I~~v~-~sD~G~Y~C~v~~~~~~-~~~~v~L~V~ 103 (106)
T cd05714 67 DASLVITDLR-LEDSGRYRCEVIDGIED-EQDTVELEVR 103 (106)
T ss_pred cceEEECCCC-HHHCEEEEEEEEcCCCc-eEEEEEEEEE
Confidence 4689999997 69999999999987654 4567777775
No 129
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=98.14 E-value=6e-06 Score=48.00 Aligned_cols=38 Identities=18% Similarity=0.349 Sum_probs=32.5
Q ss_pred eEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
+|.|.+++ ..|+|.|.|.+.+..+. ....+.|.|..+|
T Consensus 2 sL~i~~v~-~~D~G~Y~C~~~~~~~~-~~~~~~l~v~~~P 39 (139)
T cd05771 2 SLTLPGLT-VHDEGTYICSVSTPPHQ-AQQIIQLSVSEPP 39 (139)
T ss_pred eEEECCCC-HHHCEEEEEEEEccCcc-eeeEEEEEEecCC
Confidence 68999997 69999999999987765 4567889998888
No 130
>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4. Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=98.11 E-value=8.6e-06 Score=44.65 Aligned_cols=24 Identities=33% Similarity=0.610 Sum_probs=21.2
Q ss_pred eEEEeccCCCCCCeEEEEEEecCCC
Q psy14473 36 TLIIENVERQSDQATYTCVAKTAQG 60 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~~g 60 (94)
+|.|.++. .+|+|.|.|.+.|..+
T Consensus 66 ~L~I~~l~-~sDsgtY~C~v~~~~~ 89 (94)
T cd07690 66 PLIIKNLK-IEDSDTYICEVEDKKE 89 (94)
T ss_pred EEEECCCC-HHHCEEEEEEECCccc
Confidence 59999997 6999999999999753
No 131
>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C ....
Probab=98.11 E-value=8.7e-07 Score=45.45 Aligned_cols=24 Identities=54% Similarity=0.858 Sum_probs=20.9
Q ss_pred cCCeEEEeccCCCCCCeEEEEEEec
Q psy14473 33 PNGTLIIENVERQSDQATYTCVAKT 57 (94)
Q Consensus 33 ~~~~L~i~~v~~~~D~G~Y~C~~~n 57 (94)
.++.|.+.++. .+|.|.|+|.|.|
T Consensus 52 ~~~~L~i~~v~-~~~~g~y~C~a~N 75 (75)
T PF13927_consen 52 SNSTLTISNVT-RSDNGTYTCIASN 75 (75)
T ss_dssp EEEEEEESSCC-GGGTEEEEEEEEE
T ss_pred eeeEEEEccCC-HHhCcEEEEEEEC
Confidence 45689999997 5999999999987
No 132
>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA
Probab=98.11 E-value=0.0001 Score=42.01 Aligned_cols=37 Identities=22% Similarity=0.385 Sum_probs=30.2
Q ss_pred CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
+.+|.|.+++ .+|+|.|.|.+.+.... ....+.|.|.
T Consensus 78 ~asL~i~~v~-~sD~G~Y~C~V~~g~~~-~~~~v~L~V~ 114 (117)
T cd05901 78 DASLTIVKLR-ASDAGVYRCEVMHGIED-TQDTVSLDVS 114 (117)
T ss_pred ceEEEEcccc-cccCEEEEEEEEECCcc-cEEEEEEEEE
Confidence 5689999997 79999999999987643 4567777775
No 133
>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP). Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.
Probab=98.03 E-value=1.7e-05 Score=43.91 Aligned_cols=36 Identities=14% Similarity=0.295 Sum_probs=29.4
Q ss_pred CeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 35 GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 35 ~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
.+|.|.+++ .+|+|.|.|.+.+..+. ....+.|.|.
T Consensus 68 ~sL~I~~v~-~~DsG~Y~C~v~~~~~~-~~~~~~l~v~ 103 (106)
T cd05877 68 ASLVITDLR-LEDYGRYRCEVIDGLED-ESVVVALRLR 103 (106)
T ss_pred EEEEEccCC-hHHCEEEEEEEEecccc-eEEEEEEEEE
Confidence 479999997 69999999999988765 4557777764
No 134
>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively). Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel
Probab=98.01 E-value=7.9e-05 Score=39.58 Aligned_cols=54 Identities=13% Similarity=0.034 Sum_probs=31.5
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCcEEEc-cCCe------EEEeccCCCCCCeEEEEEEecCCCc
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRKQKVF-PNGT------LIIENVERQSDQATYTCVAKTAQGY 61 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~~~~~-~~~~------L~i~~v~~~~D~G~Y~C~~~n~~g~ 61 (94)
.|+|.+.+ +|++++..+......... .+++ |.+... ...|.+.|+|.+.|....
T Consensus 10 ~~~P~~~v--~W~~~~~~l~~~~~~~~~~~~~~~~~~s~l~~~~~-~~d~g~~~~C~v~h~~l~ 70 (82)
T cd05761 10 GSKPAATI--RWFKGDKELKGVKLKEEDENGKTFTVTSSLRFQVD-REDDGAPIICRVDHPALK 70 (82)
T ss_pred CcCcCCeE--EEEECCEEccCceeeEecCCCCEEEEEEEEEEEcc-hhhCCCEEEEEEeChhcC
Confidence 35688766 899999988533212222 2232 333322 223456999999987643
No 135
>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen
Probab=97.99 E-value=5.8e-05 Score=42.54 Aligned_cols=37 Identities=24% Similarity=0.474 Sum_probs=28.9
Q ss_pred CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
+.+|.|.+++ .+|+|.|.|.+..... .....+.|.|.
T Consensus 71 ~asL~i~nv~-~~D~G~Y~C~v~~g~~-~~~~~v~L~V~ 107 (110)
T cd05902 71 NASLVLSRLR-YSDSGTYRCEVVLGIN-DEQDTVPLEVT 107 (110)
T ss_pred eEEEEECCCC-HHHCEEEEEEEEECCc-ccEEEEEEEEE
Confidence 4589999997 6999999999998653 34567777765
No 136
>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel
Probab=97.96 E-value=0.00016 Score=38.63 Aligned_cols=52 Identities=17% Similarity=0.109 Sum_probs=31.1
Q ss_pred ccCCCCeEEEEeeCCEEcCCCCc-EEEccC-CeEEEec-----cCCCCCCeEEEEEEecCC
Q psy14473 6 LFLIYSYHQSFYTEGRTLPINRK-QKVFPN-GTLIIEN-----VERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 6 g~P~~~i~i~W~k~~~~l~~~~~-~~~~~~-~~L~i~~-----v~~~~D~G~Y~C~~~n~~ 59 (94)
++|...| +|+++++.+..... .....+ ++..+.. .....|...|+|.+.+..
T Consensus 11 ~~P~~~I--tW~k~g~~l~~~~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~ 69 (83)
T cd07705 11 SKPAANI--KWRKGDQELEGAPTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES 69 (83)
T ss_pred ccCCCEe--EEEECCEECCCcceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence 3587655 89999998864332 112233 2333322 222345679999999875
No 137
>cd00098 IgC Immunoglobulin Constant domain. IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.
Probab=97.93 E-value=3e-05 Score=41.92 Aligned_cols=56 Identities=20% Similarity=0.258 Sum_probs=33.9
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCc-EEE--ccCCe------EEEeccCCCCCCeEEEEEEecCCC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRK-QKV--FPNGT------LIIENVERQSDQATYTCVAKTAQG 60 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~-~~~--~~~~~------L~i~~v~~~~D~G~Y~C~~~n~~g 60 (94)
+.|+..+.+.|+|++++..+..... ... ..+++ |.+.... -.|.|.|+|.+.+...
T Consensus 22 a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~-~~~~~~y~C~v~h~~~ 86 (95)
T cd00098 22 ATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSD-WNSGDTYTCVVTHESL 86 (95)
T ss_pred EeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHH-hCCCCCEEEEEEeCCC
Confidence 3566434455689999998865432 112 23443 3333332 2489999999998653
No 138
>PHA02633 hypothetical protein; Provisional
Probab=97.91 E-value=8.5e-05 Score=37.48 Aligned_cols=39 Identities=26% Similarity=0.416 Sum_probs=29.1
Q ss_pred CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEec
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGI 74 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~ 74 (94)
...|.|.++. .+|+|.|.|...|.. .....++.|+|...
T Consensus 17 ~~nLwilpa~-~sDSGiYiC~~rn~t-~c~~~si~l~V~~~ 55 (63)
T PHA02633 17 CNNMLILNPT-QSDSGIYMCITKNET-YSDMMKFDLCICLR 55 (63)
T ss_pred cccEEEeccc-cccCcEEEEEEcCCC-eeEEEEEEEEEeec
Confidence 4578899997 699999999999875 33445666766543
No 139
>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins. Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.
Probab=97.90 E-value=4.4e-05 Score=41.74 Aligned_cols=37 Identities=30% Similarity=0.439 Sum_probs=28.0
Q ss_pred CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+.+|.|.+++ .+|+|.|.|...+.-....+..+.|+|
T Consensus 60 ~~sL~I~nv~-~~D~G~Y~C~~~~~p~g~~~~~~~L~v 96 (97)
T cd05846 60 STSITIWNVT-LEDEGCYKCIFNTFPDGSKSGTMCLTV 96 (97)
T ss_pred ccEEEEeCCc-eeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence 4579999997 799999999987543333566777776
No 140
>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a
Probab=97.90 E-value=0.00016 Score=39.70 Aligned_cols=34 Identities=21% Similarity=0.303 Sum_probs=24.9
Q ss_pred CCCcEEEcc--C--CeEEEeccCCCCCCeEEEEEEecCC
Q psy14473 25 INRKQKVFP--N--GTLIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 25 ~~~~~~~~~--~--~~L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
.+.|+.... . -+|.|.+++ .+|+|.|.|.+....
T Consensus 48 ~d~Rf~~~~~~~~~~tL~I~~vq-~~D~G~Y~Cqv~t~p 85 (95)
T cd05881 48 KDSRFQLVNFSSNELRVSLSNVS-LSDEGRYFCQLYTDP 85 (95)
T ss_pred CCcCEEEEeCCCCEEEEEECcCC-cccCEEEEEEEEccc
Confidence 445665432 2 259999997 699999999998643
No 141
>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG). Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi
Probab=97.88 E-value=5.3e-05 Score=42.54 Aligned_cols=38 Identities=24% Similarity=0.432 Sum_probs=29.3
Q ss_pred CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEe
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~ 73 (94)
+.+|.|.+++ .+|+|.|.|.+...... ....+.|.|..
T Consensus 71 ~asL~I~~l~-~sD~G~Y~C~v~~~~~~-~~~~v~l~V~g 108 (110)
T cd05878 71 DASLEISRLR-SSDSGVYRCEVMHGIED-EQDTVPLEVTG 108 (110)
T ss_pred cEEEEECCCC-hhhCEEEEEEEEeCCCc-ceEEEEEEEEE
Confidence 3579999997 69999999999876533 45577777753
No 142
>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins. Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.
Probab=97.78 E-value=0.00012 Score=40.35 Aligned_cols=33 Identities=27% Similarity=0.379 Sum_probs=24.9
Q ss_pred CCeEEEeccCCCCCCeEEEEEEecC-CCceeeeEEE
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKTA-QGYSSRGTLE 68 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n~-~g~~~~~~~~ 68 (94)
+.+|.|.+++ .+|+|.|+|.+.+. .|. ..+.+.
T Consensus 59 d~sI~i~nvt-~~D~G~Y~C~~~t~P~g~-~~~~i~ 92 (96)
T cd05889 59 DMSLSFNNAT-EEDVGLYCCSLVTYPQGS-WEKVIE 92 (96)
T ss_pred ccEEEEcCCC-cccCEEEEEEEEeCCCCC-eEEEEE
Confidence 5789999998 69999999998764 444 343443
No 143
>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA). Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.
Probab=97.77 E-value=5.6e-05 Score=42.75 Aligned_cols=26 Identities=27% Similarity=0.612 Sum_probs=22.4
Q ss_pred CCeEEEeccCCCCCCeEEEEEEecCCC
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKTAQG 60 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n~~g 60 (94)
+.+|.|.+++ .+|+|.|.|.+.|..+
T Consensus 78 ~~sL~I~~v~-~~D~G~Y~C~v~~~~~ 103 (115)
T cd05880 78 DASILIWQLQ-PTDNGTYTCQVKNPPD 103 (115)
T ss_pred ceEEEEeeCC-hhhCEEEEEEEEeCCC
Confidence 4579999997 6999999999998654
No 144
>KOG4194|consensus
Probab=97.73 E-value=6.8e-05 Score=53.16 Aligned_cols=67 Identities=15% Similarity=0.198 Sum_probs=48.0
Q ss_pred cccCC-CCeEEEEeeCCEEcCCCCcEEEcc-CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 5 LLFLI-YSYHQSFYTEGRTLPINRKQKVFP-NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 5 ~g~P~-~~i~i~W~k~~~~l~~~~~~~~~~-~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
.|.|. |.+ .|+|+++++....|..... +.-|.+.+.. .+|+|.|+|...|..|.. ...+.+.+...+
T Consensus 731 ~~~~a~pr~--~W~k~d~pil~t~rh~f~d~dQllvv~~~~-~~daG~yTcem~~~~~~~-~~~i~l~~~~~~ 799 (873)
T KOG4194|consen 731 EGAPADPRL--EWFKEDKPILITERHTFPDGDQLLVVKENL-VEDAGIYTCEMSNTLGTE-RIHICLLVYQKK 799 (873)
T ss_pred CCCCCCccc--cccCCCCceEEeecccCCCCCeEEEEEehh-hhhcceEEEEEEeeccce-eeEEEEEEeecC
Confidence 45555 766 7999999887666655543 4457777776 799999999999988764 446666665544
No 145
>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.
Probab=97.69 E-value=0.0002 Score=39.73 Aligned_cols=55 Identities=16% Similarity=0.163 Sum_probs=34.7
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCcEE-----EccCCeEEEeccCCCCCCe-EEEEEEecCCCc
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRKQK-----VFPNGTLIIENVERQSDQA-TYTCVAKTAQGY 61 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~~~-----~~~~~~L~i~~v~~~~D~G-~Y~C~~~n~~g~ 61 (94)
.|.|.+.++|+|||++..+....... .....+|.+. +.+ .|-| .|+|.|.+..+.
T Consensus 27 g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r-~D~g~~~sC~A~l~l~~ 87 (100)
T cd05755 27 GVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDR-EDHGANFSCETELDLRP 87 (100)
T ss_pred CcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cch-hhCCcEEEEEEEeccCc
Confidence 45899987779999999885432111 0111245544 334 5655 899999987643
No 146
>PHA03376 BARF1; Provisional
Probab=97.68 E-value=0.00049 Score=42.38 Aligned_cols=24 Identities=21% Similarity=0.354 Sum_probs=20.1
Q ss_pred CeEEEeccCCCCCCeEEEEEEecCC
Q psy14473 35 GTLIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 35 ~~L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
-+|.|.+++ .+|.|.|+|..+-..
T Consensus 87 vsLvI~~l~-lSDdGtY~C~fQkge 110 (221)
T PHA03376 87 FFLVVTAAN-ISHDGNYLCRMKLGE 110 (221)
T ss_pred EEEEEEeee-ecCCceEEEEEEcCC
Confidence 369999997 799999999987543
No 147
>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins. Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2
Probab=97.67 E-value=0.0001 Score=41.59 Aligned_cols=25 Identities=32% Similarity=0.664 Sum_probs=21.7
Q ss_pred CeEEEeccCCCCCCeEEEEEEecCCC
Q psy14473 35 GTLIIENVERQSDQATYTCVAKTAQG 60 (94)
Q Consensus 35 ~~L~i~~v~~~~D~G~Y~C~~~n~~g 60 (94)
.+|.|.+++ .+|+|.|.|.+.|...
T Consensus 80 ~sL~I~~v~-~~D~G~Y~C~v~~~~~ 104 (116)
T cd05715 80 ASIVIHNLQ-FTDNGTYTCDVKNPPD 104 (116)
T ss_pred eEEEEeeCC-cccCEEEEEEEEeCCC
Confidence 579999997 6999999999997654
No 148
>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins. IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=97.67 E-value=0.00015 Score=40.16 Aligned_cols=24 Identities=29% Similarity=0.465 Sum_probs=20.7
Q ss_pred CeEEEeccCCCCCCeEEEEEEecCC
Q psy14473 35 GTLIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 35 ~~L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
-+|.|.+++ .+|+|.|.|.+.+..
T Consensus 70 ~~L~I~~~~-~~DsG~Y~C~~~~~~ 93 (109)
T cd04983 70 SSLHISAAQ-LSDSAVYFCALSESG 93 (109)
T ss_pred EEEEECCCC-HHHCEEEEEEEecCC
Confidence 379999997 699999999998754
No 149
>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.
Probab=97.61 E-value=0.00074 Score=36.05 Aligned_cols=51 Identities=12% Similarity=0.053 Sum_probs=29.5
Q ss_pred ccCCCCeEEEEeeCCEEcCCCCcEEE-c-cCC------eEEEeccCCCCCCeEEEEEEecCC
Q psy14473 6 LFLIYSYHQSFYTEGRTLPINRKQKV-F-PNG------TLIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 6 g~P~~~i~i~W~k~~~~l~~~~~~~~-~-~~~------~L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
++|. +.|+|+|+|..+........ . .++ .|.+... ...|...|+|.+.+..
T Consensus 11 f~P~--~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~-~~d~g~~ytC~v~h~~ 69 (83)
T cd05884 11 SKPA--ADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVD-RSDDGVAIICRVDHES 69 (83)
T ss_pred ccCC--CEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcc-cccCCCEEEEEEechh
Confidence 3565 45589999999754322222 1 222 3444433 2244568999999865
No 150
>cd00099 IgV Immunoglobulin variable domain (IgV). IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.61 E-value=0.00014 Score=39.80 Aligned_cols=24 Identities=33% Similarity=0.624 Sum_probs=21.1
Q ss_pred eEEEeccCCCCCCeEEEEEEecCCC
Q psy14473 36 TLIIENVERQSDQATYTCVAKTAQG 60 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~~g 60 (94)
+|.|.+++ .+|+|.|.|.+.+..+
T Consensus 68 sL~I~~v~-~~D~G~Y~C~v~~~~~ 91 (105)
T cd00099 68 TLTISSLQ-PEDSAVYYCAVSLSGG 91 (105)
T ss_pred EEEECCCC-HHHCEEEEEEEecCCC
Confidence 79999997 6999999999987653
No 151
>KOG1480|consensus
Probab=97.60 E-value=3.6e-05 Score=55.34 Aligned_cols=68 Identities=19% Similarity=0.136 Sum_probs=50.6
Q ss_pred CccccCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEe
Q psy14473 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~ 73 (94)
|..|.|...+ .|+|++..+..+.......+..|.+..+. ++|.|.|+|++.|-.+......+.+.+.+
T Consensus 153 ~pe~~paae~--~w~k~e~~~~pd~n~~~~~d~~li~~~ar-lsd~~nytc~a~ni~~~r~~~~~~v~vyv 220 (909)
T KOG1480|consen 153 PPEGDPKAEV--EWLKNEVVIDPDANVIRASDHNLIISQAR-LSDSGNYTCEATNIVAKRKSDPATVQVYV 220 (909)
T ss_pred Ccccchhhhh--hccccCCCCCccccchhhhcCCccccchh-hhhcccceeeeehhhccccccceEEEEEE
Confidence 3456677777 79999887766544455667889999995 79999999999998876555555555543
No 152
>cd00096 Ig Immunoglobulin domain. Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.
Probab=97.59 E-value=0.00032 Score=34.28 Aligned_cols=51 Identities=29% Similarity=0.358 Sum_probs=33.6
Q ss_pred ccCCCCeEEEEeeCCEEcCCCCc-------EEEccCCeEEEeccCCCCCCeEEEEEEecCC
Q psy14473 6 LFLIYSYHQSFYTEGRTLPINRK-------QKVFPNGTLIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 6 g~P~~~i~i~W~k~~~~l~~~~~-------~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
+.+...+ .|++++........ ........|.+.++. ..|.|.|.|.+.+..
T Consensus 9 ~~~~~~~--~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~-~~d~g~y~C~~~~~~ 66 (74)
T cd00096 9 GPPPPTI--TWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVT-LEDSGTYTCVASNSA 66 (74)
T ss_pred CCCCCcE--EEEECCEECCCcccEEeccccCcceeEEEEEECccC-cccCcEEEEEEecCc
Confidence 3344444 89998876543321 111234578888886 599999999998865
No 153
>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....
Probab=97.58 E-value=0.00015 Score=39.82 Aligned_cols=35 Identities=31% Similarity=0.455 Sum_probs=24.8
Q ss_pred eEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
+|.|.+++ .+|+|.|.|.+.............|.|
T Consensus 80 sL~i~~l~-~~DsG~Y~C~v~~~~~~~~~~~~~L~V 114 (114)
T PF07686_consen 80 SLTIKNLQ-PSDSGTYFCQVSTSNEQSFGNGTKLTV 114 (114)
T ss_dssp EEEESSES-GGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred EEEECCCC-cCcCEEEEEEEEECCCCEECCcEEEEC
Confidence 59999997 699999999998763222333444443
No 154
>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals. These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region
Probab=97.56 E-value=0.00022 Score=45.61 Aligned_cols=47 Identities=23% Similarity=0.416 Sum_probs=38.6
Q ss_pred CCCCeEEEEee-CCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEec
Q psy14473 8 LIYSYHQSFYT-EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKT 57 (94)
Q Consensus 8 P~~~i~i~W~k-~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n 57 (94)
..|.. .|.- +++.+..+.+.++...|.|.+.+.. .+++|.|+|..+-
T Consensus 11 iDP~y--~W~GP~g~~l~gn~~~nIT~TG~L~~~~F~-esmSG~YTCtLsY 58 (271)
T PF07354_consen 11 IDPTY--LWTGPNGKPLSGNSYVNITETGKLMFKNFQ-ESMSGSYTCTLSY 58 (271)
T ss_pred CCCce--EEECCCCcccCCCCeEEEccCceEEeeccc-cccCCceEEEEEE
Confidence 34555 7986 5777777788899999999999997 6999999998763
No 155
>PHA02987 Ig domain OX-2-like protein; Provisional
Probab=97.42 E-value=0.0012 Score=40.38 Aligned_cols=41 Identities=27% Similarity=0.464 Sum_probs=30.7
Q ss_pred cCCeEEEeccCCCCCCeEEEEEEec-CCCceeeeEEEEEEEec
Q psy14473 33 PNGTLIIENVERQSDQATYTCVAKT-AQGYSSRGTLEVQVMGI 74 (94)
Q Consensus 33 ~~~~L~i~~v~~~~D~G~Y~C~~~n-~~g~~~~~~~~l~v~~~ 74 (94)
.+.+|.|.++. .+|+|.|.|.... +.|...+....|+|...
T Consensus 83 ~~StItIknVt-~sDeGcY~C~F~tfp~G~~~~gt~CLtVt~~ 124 (189)
T PHA02987 83 NESTILIKNVS-LKDNGCYTCIFNTLLSKNNEKGVVCLNVTTD 124 (189)
T ss_pred CcceEEEEeCC-hhhCeEEEEEEEecCCCCCceeEEEEEEEch
Confidence 35689999998 6999999998764 44524566777887654
No 156
>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.
Probab=97.27 E-value=0.003 Score=34.24 Aligned_cols=55 Identities=16% Similarity=0.206 Sum_probs=32.2
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCC---cEEEccCCeEEE---eccCCCCCCeEEEEEEecCC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINR---KQKVFPNGTLII---ENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~---~~~~~~~~~L~i---~~v~~~~D~G~Y~C~~~n~~ 59 (94)
+.|+..+.+.++|+|++..+.... ......+++..+ ..+. ..+.+.|+|.+.+..
T Consensus 23 a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~-~~~~~~ytC~V~H~~ 83 (93)
T cd07698 23 ATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVP-PEDKARYSCRVEHSG 83 (93)
T ss_pred EEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEEC-CCCCCEEEEEEEeCC
Confidence 467655667779999986432221 122233444332 2343 367789999998754
No 157
>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=97.26 E-value=0.00085 Score=34.62 Aligned_cols=36 Identities=17% Similarity=0.303 Sum_probs=25.1
Q ss_pred EEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEec
Q psy14473 14 QSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKT 57 (94)
Q Consensus 14 i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n 57 (94)
|+|+| |..+.. ..+.+|-+.... .+-.|.|.|.+.+
T Consensus 19 i~W~k-G~~~~~------~~~~tlnLGs~~-~DPRG~Y~C~~s~ 54 (69)
T cd07691 19 ITWKK-GKEILE------VSNTLLDLGSRI-NDPRGTYSCKESE 54 (69)
T ss_pred EEEec-Cccccc------ccccEEeccCcc-cCCCcceEecCcc
Confidence 48999 443321 115578888876 4779999998877
No 158
>smart00407 IGc1 Immunoglobulin C-Type.
Probab=97.21 E-value=0.0029 Score=32.92 Aligned_cols=54 Identities=15% Similarity=0.195 Sum_probs=29.3
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCcE---EEccCCeEE------EeccCCCCCCeEEEEEEecCC
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRKQ---KVFPNGTLI------IENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~~---~~~~~~~L~------i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
.|+=.+.+.++|+|+|+.+...... ....+|+.. +.... ..+...|+|.+....
T Consensus 9 ~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~-~~~~~~~tC~V~H~~ 71 (75)
T smart00407 9 SGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSAST-WESGDTYTCQVTHEG 71 (75)
T ss_pred EeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEcccc-CCCCCEEEEEEEEcC
Confidence 4553344666999999875432111 112344333 32222 245678999987653
No 159
>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain. IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be
Probab=97.18 E-value=0.0047 Score=33.72 Aligned_cols=55 Identities=18% Similarity=0.158 Sum_probs=32.4
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCc---EEEccCCeEEEe---ccCCCCCCeEEEEEEecCC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRK---QKVFPNGTLIIE---NVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~---~~~~~~~~L~i~---~v~~~~D~G~Y~C~~~n~~ 59 (94)
+.|+-.+.|+++|+++|..+..... .....+++..+. .+. ..+...|+|.+....
T Consensus 23 ~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~-~~~~~~ysC~V~H~~ 83 (94)
T cd05766 23 VWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETT-PSRGDTYTCVVEHSS 83 (94)
T ss_pred EeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEc-CCCCCEEEEEEEeCC
Confidence 3565446678899999998754311 111234443332 233 245668999998754
No 160
>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain. IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating
Probab=97.12 E-value=0.0099 Score=33.49 Aligned_cols=53 Identities=11% Similarity=0.154 Sum_probs=29.0
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCcE-EEccCC-e------EEEeccCCCCCCe-EEEEEEecCC
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRKQ-KVFPNG-T------LIIENVERQSDQA-TYTCVAKTAQ 59 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~~-~~~~~~-~------L~i~~v~~~~D~G-~Y~C~~~n~~ 59 (94)
.|+=.+.++++|+|||+.+...... ....++ + |.+.. . ..|.| .|+|.+....
T Consensus 31 ~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~-~~d~~~~ytC~V~H~~ 92 (111)
T cd05772 31 HGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-T-EDDVHSQVTCEVQHRT 92 (111)
T ss_pred eeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-c-cccccCceEEEEEeCC
Confidence 3443345677999999998543221 112232 2 33332 2 24545 4999998754
No 161
>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin. IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.
Probab=97.10 E-value=0.0016 Score=35.62 Aligned_cols=53 Identities=13% Similarity=0.232 Sum_probs=33.6
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcE-EE--ccCCeEEEec---cCCCCCCeEEEEEEecC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQ-KV--FPNGTLIIEN---VERQSDQATYTCVAKTA 58 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~-~~--~~~~~L~i~~---v~~~~D~G~Y~C~~~n~ 58 (94)
+.||-.+.|.++|.|||..+. +... .. ..+++..+.. +. ..+...|+|.+...
T Consensus 24 a~gFyP~~i~v~W~~dg~~~~-~~~~~~~~p~~d~tyq~~s~l~~~-~~~~~~ysC~V~H~ 82 (93)
T cd05770 24 VTGFHPPDIEIRLLKNGVKIP-KVEQSDLSFSKDWTFYLLKSTEFT-PTKGDEYACRVRHN 82 (93)
T ss_pred EEEEeCCCCEEEEEECCEECC-CcEECcEEECCCCCEEEEEEEEEC-CCCCCeEEEEEEEC
Confidence 356656778889999999876 3221 12 3345544332 34 36677899999864
No 162
>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells. It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.
Probab=97.06 E-value=0.0042 Score=34.75 Aligned_cols=39 Identities=21% Similarity=0.280 Sum_probs=29.6
Q ss_pred ccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 32 FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 32 ~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
..+-+|.|..++ ..|+|.|...+.+..|........|.|
T Consensus 68 ~enlaLlIkaAq-~qDSG~Y~LEvT~~sG~V~~~~FqVsV 106 (108)
T PF11465_consen 68 SENLALLIKAAQ-PQDSGLYCLEVTNESGKVCTKNFQVSV 106 (108)
T ss_dssp TTTTEEEESS-S-GGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred ccCceEEEeecC-cccCceEEEEEEcCCCcEEEEEEEEEe
Confidence 357799999997 699999999999988876555666555
No 163
>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI. IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.
Probab=96.91 E-value=0.0044 Score=33.71 Aligned_cols=43 Identities=21% Similarity=0.386 Sum_probs=26.5
Q ss_pred EEEEeeCCEEcCCCCcEEEc---cCCeEEEeccCCCCCCeEEEEEEe
Q psy14473 13 HQSFYTEGRTLPINRKQKVF---PNGTLIIENVERQSDQATYTCVAK 56 (94)
Q Consensus 13 ~i~W~k~~~~l~~~~~~~~~---~~~~L~i~~v~~~~D~G~Y~C~~~ 56 (94)
.+.|+|++............ ....+.|..++ .+|+|.|.|...
T Consensus 30 ~f~l~k~g~~~~~~~~~~~~~~~~~a~f~I~~~~-~~~~G~Y~C~~~ 75 (94)
T cd05711 30 RFILYKEGRSKPVLHLYEKHHGGFQASFPLGPVT-PAHAGTYRCYGS 75 (94)
T ss_pred EEEEEECCCCCCceecccccCCeEEEEEEecCCC-cccCEEEEEEEE
Confidence 45799977543210000000 12367899997 699999999975
No 164
>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain. IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom
Probab=96.88 E-value=0.0077 Score=32.94 Aligned_cols=55 Identities=9% Similarity=0.105 Sum_probs=32.1
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcE---EEccCCeEEEe---ccCCCCCCeEEEEEEecCC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQ---KVFPNGTLIIE---NVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~---~~~~~~~L~i~---~v~~~~D~G~Y~C~~~n~~ 59 (94)
+.||-...|+++|.|+|..+..+... ....+++..+. .+. ..+...|+|.+....
T Consensus 24 a~gFyP~~I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v~-~~~~~~ytC~V~H~~ 84 (94)
T cd05767 24 VDNFFPPVLNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNFT-PEEGDIYSCIVEHWG 84 (94)
T ss_pred EEEEECCcCEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEEE-CCCCCeEEEEEEeCC
Confidence 35654466888999999987543211 12234433321 223 245568999998753
No 165
>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain. IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=96.87 E-value=0.0026 Score=35.62 Aligned_cols=22 Identities=45% Similarity=0.673 Sum_probs=19.1
Q ss_pred CeEEEeccCCCCCCeEEEEEEec
Q psy14473 35 GTLIIENVERQSDQATYTCVAKT 57 (94)
Q Consensus 35 ~~L~i~~v~~~~D~G~Y~C~~~n 57 (94)
..|.|.++. .+|+|.|.|.+..
T Consensus 77 ~~L~I~~~~-~~Dsg~Y~C~~~~ 98 (116)
T cd04982 77 STLTIQNLE-KEDSATYYCAYWE 98 (116)
T ss_pred EEEEEEECC-HHHCEEEEEEEec
Confidence 369999997 6999999999874
No 166
>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain. IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.79 E-value=0.0027 Score=34.56 Aligned_cols=22 Identities=27% Similarity=0.515 Sum_probs=19.2
Q ss_pred eEEEeccCCCCCCeEEEEEEecC
Q psy14473 36 TLIIENVERQSDQATYTCVAKTA 58 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~ 58 (94)
.|.|.+++ .+|+|.|.|.+.+.
T Consensus 64 ~L~I~~~~-~~Dsg~Y~C~~~~~ 85 (98)
T cd04984 64 SLTISGAQ-TEDEADYYCQVWDS 85 (98)
T ss_pred EEEECCCC-hhhCEEEEEEEccC
Confidence 59999997 69999999998753
No 167
>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins. Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus
Probab=96.69 E-value=0.0098 Score=32.57 Aligned_cols=51 Identities=20% Similarity=0.128 Sum_probs=28.1
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCcEEEccCC------eEEEeccCCCCCCeEEEEEEecCC
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRKQKVFPNG------TLIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~------~L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
.|+|.+.| +|+++.... .........+| .|.+... +..|...|+|.+.+..
T Consensus 26 ~gkP~a~I--tW~~~~~~~-~~~~~~~~~~g~~tv~S~l~~~p~-~~d~G~~~tC~v~h~~ 82 (95)
T cd05719 26 NGKPPATI--SWETTLGGE-AETQSKENPNGTVTVTSEYRLVPS-REANGKELTCVVSHPT 82 (95)
T ss_pred CCcCCCEE--EEEeCCCCc-ceeEeecCCCCCEEEEEEEEEecC-HHHCCCEEEEEEeCcc
Confidence 58899998 899971110 00111122333 3444333 3244458999999875
No 168
>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.57 E-value=0.003 Score=34.85 Aligned_cols=22 Identities=41% Similarity=0.567 Sum_probs=19.2
Q ss_pred eEEEeccCCCCCCeEEEEEEecC
Q psy14473 36 TLIIENVERQSDQATYTCVAKTA 58 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~ 58 (94)
.|.|.++. .+|+|.|.|.+.+.
T Consensus 72 ~L~I~~~~-~~Dsg~Y~Ca~~~~ 93 (106)
T cd04980 72 TLTISRVE-PEDAAVYYCQQYGT 93 (106)
T ss_pred EEEECCCC-hHHCEEEEEEEeCC
Confidence 59999997 69999999998754
No 169
>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain. IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.
Probab=96.56 E-value=0.007 Score=35.04 Aligned_cols=54 Identities=17% Similarity=0.208 Sum_probs=27.7
Q ss_pred cccCCCCeEEEEeeCCEEcCC-----CC----cEEEccCCeE------EEeccCCCCCCeEEEEEEecCC
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPI-----NR----KQKVFPNGTL------IIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~-----~~----~~~~~~~~~L------~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
.|+..+.+.|+|+|++..... .. ......+|++ .+... ...+.+.|+|.+.+..
T Consensus 63 ~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~-~~~~g~~ytC~V~H~~ 131 (139)
T cd05771 63 AGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPG-TEDAGATYTCRVSHVS 131 (139)
T ss_pred CCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCC-ccCCCCEEEEEEEcCC
Confidence 465334455689998754211 11 1122334443 33322 2234568999998754
No 170
>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4. Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.
Probab=96.54 E-value=0.039 Score=29.89 Aligned_cols=46 Identities=13% Similarity=0.240 Sum_probs=29.5
Q ss_pred cCCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecC
Q psy14473 7 FLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTA 58 (94)
Q Consensus 7 ~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~ 58 (94)
.|.++| .|...+.... ........+|.+..+. ..|+|..+|.+.-.
T Consensus 28 ~p~~~i--~w~~P~n~~~---~~~~~~~ktL~~~qv~-~qdSG~WtC~V~~~ 73 (88)
T cd07694 28 LPAFKV--EWRGPGNKSK---QILNQDKKTLNLVQLG-PNDSGTWDCIVSVN 73 (88)
T ss_pred CCCccE--EEeCCCCccc---eeccCCccEEEeceeC-cccCCEEEEEEEEC
Confidence 344455 7986543221 1111245689999997 69999999999643
No 171
>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.
Probab=96.47 E-value=0.0048 Score=33.49 Aligned_cols=23 Identities=17% Similarity=0.345 Sum_probs=19.9
Q ss_pred eEEEeccCCCCCCeEEEEEEecCC
Q psy14473 36 TLIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
+|.|.++. .+|+|.|.|.+....
T Consensus 65 ~L~I~~v~-~~DsG~Y~C~~~~~~ 87 (98)
T cd05716 65 TVTLNQLR-KEDAGWYWCGVGDDG 87 (98)
T ss_pred EEEEcCCC-HHHCEEEEEEcccCC
Confidence 69999997 699999999988654
No 172
>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....
Probab=96.46 E-value=0.019 Score=30.28 Aligned_cols=55 Identities=13% Similarity=0.231 Sum_probs=32.9
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEE--E-ccCCeEEEe---ccCCCCCCeEEEEEEecCC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQK--V-FPNGTLIIE---NVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~--~-~~~~~L~i~---~v~~~~D~G~Y~C~~~n~~ 59 (94)
+.||-...|.|+|++++..+....... . ..+|+..+. .+. ..+...|+|.+....
T Consensus 17 v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~-~~~~~~ysC~V~H~~ 77 (83)
T PF07654_consen 17 VSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT-WNSGDEYSCRVTHES 77 (83)
T ss_dssp EEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE-TTTTGGEEEEEEETT
T ss_pred EEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec-CCCCCEEEEEEEECC
Confidence 456555788889999999876443221 1 234443222 222 245558999998754
No 173
>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ].; PDB: 2VSC_B 2JJS_D 2JJT_C.
Probab=96.44 E-value=0.014 Score=33.82 Aligned_cols=62 Identities=19% Similarity=0.272 Sum_probs=36.3
Q ss_pred cCCCCeEEEEeeCCEEcCC----CCcE--------EE----ccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEE
Q psy14473 7 FLIYSYHQSFYTEGRTLPI----NRKQ--------KV----FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70 (94)
Q Consensus 7 ~P~~~i~i~W~k~~~~l~~----~~~~--------~~----~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~ 70 (94)
.....+.|.|..+++.+-. ..+. .+ .++.+|.+.... .=.|.|+|.+...... ....+.|+
T Consensus 42 ~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~--a~~GnYTCeVt~~~~e-ge~~i~Lk 118 (130)
T PF08204_consen 42 NNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSD--AVEGNYTCEVTELSRE-GETTIELK 118 (130)
T ss_dssp SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHH--HH-EEEEEEEEETTEE-EEEEEEEE
T ss_pred cccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchh--ccccceEEEEEecCCC-ceEEEEEE
Confidence 4556778899998887521 1111 11 123458887763 3389999999876533 34566666
Q ss_pred E
Q psy14473 71 V 71 (94)
Q Consensus 71 v 71 (94)
+
T Consensus 119 ~ 119 (130)
T PF08204_consen 119 Y 119 (130)
T ss_dssp E
T ss_pred E
Confidence 5
No 174
>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE). IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.
Probab=96.40 E-value=0.015 Score=31.78 Aligned_cols=56 Identities=13% Similarity=0.167 Sum_probs=30.3
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCc---EEEccCCeEEEec---cCC--CCCCeEEEEEEecCC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRK---QKVFPNGTLIIEN---VER--QSDQATYTCVAKTAQ 59 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~---~~~~~~~~L~i~~---v~~--~~D~G~Y~C~~~n~~ 59 (94)
+.|+-...|+|+|+++|..+..... .....+++..+.. +.. -.+...|+|.+....
T Consensus 23 a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~ 86 (94)
T cd05847 23 ISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQG 86 (94)
T ss_pred EEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECC
Confidence 3465445788899999998633211 1112233322221 111 124568999998754
No 175
>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain. IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.
Probab=96.32 E-value=0.004 Score=34.58 Aligned_cols=23 Identities=30% Similarity=0.593 Sum_probs=20.0
Q ss_pred CeEEEeccCCCCCCeEEEEEEecC
Q psy14473 35 GTLIIENVERQSDQATYTCVAKTA 58 (94)
Q Consensus 35 ~~L~i~~v~~~~D~G~Y~C~~~n~ 58 (94)
..|.|.++. .+|+|.|.|.+.+.
T Consensus 72 ~~L~I~~~~-~~Dsg~Y~Ca~~~~ 94 (110)
T cd05899 72 SSLTIKSAE-PEDSAVYLCASSLG 94 (110)
T ss_pred cEEEECCCC-hhhCEEEEEEeeCC
Confidence 469999997 69999999998864
No 176
>smart00406 IGv Immunoglobulin V-Type.
Probab=96.29 E-value=0.002 Score=33.27 Aligned_cols=19 Identities=37% Similarity=0.627 Sum_probs=16.7
Q ss_pred CeEEEeccCCCCCCeEEEEE
Q psy14473 35 GTLIIENVERQSDQATYTCV 54 (94)
Q Consensus 35 ~~L~i~~v~~~~D~G~Y~C~ 54 (94)
.+|.|.+++ .+|+|.|.|.
T Consensus 62 ~~L~i~~~~-~~D~G~Y~C~ 80 (81)
T smart00406 62 VSLTISNLR-VEDTGTYYCA 80 (81)
T ss_pred EEEEEcCCC-HHHCEEEEEc
Confidence 369999997 6999999996
No 177
>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain. IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.
Probab=96.25 E-value=0.006 Score=33.83 Aligned_cols=21 Identities=33% Similarity=0.569 Sum_probs=18.3
Q ss_pred eEEEeccCCCCCCeEEEEEEec
Q psy14473 36 TLIIENVERQSDQATYTCVAKT 57 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n 57 (94)
.|.|.++. .+|+|.|.|...+
T Consensus 73 ~L~I~~~~-~~Dsg~YyCa~~~ 93 (107)
T cd07700 73 RLHINRVK-PEDSGTYFCMTVG 93 (107)
T ss_pred EEEECCCC-HHHCEEEEEeEcC
Confidence 49999997 6999999999764
No 178
>cd07699 IgC_L Immunoglobulin Constant domain. IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.
Probab=96.22 E-value=0.028 Score=30.95 Aligned_cols=55 Identities=13% Similarity=0.149 Sum_probs=30.2
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCc---EEEccCCeEEEec---cC--CCCCCeEEEEEEecCC
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRK---QKVFPNGTLIIEN---VE--RQSDQATYTCVAKTAQ 59 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~---~~~~~~~~L~i~~---v~--~~~D~G~Y~C~~~n~~ 59 (94)
.|+=...++|+|+++|..+..+.. .....+|+..+.. +. .-.+...|+|.+....
T Consensus 27 ~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~ 89 (100)
T cd07699 27 NDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG 89 (100)
T ss_pred EeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence 454334577899999998753211 1112245433322 11 1123568999998754
No 179
>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=96.17 E-value=0.019 Score=31.75 Aligned_cols=56 Identities=14% Similarity=0.175 Sum_probs=30.5
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcEE--E--c--cCCeEEEec---cC--CCCCCeEEEEEEecCC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQK--V--F--PNGTLIIEN---VE--RQSDQATYTCVAKTAQ 59 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~~--~--~--~~~~L~i~~---v~--~~~D~G~Y~C~~~n~~ 59 (94)
+.||-...|.++|+|+|..+....... . . .+++..+.. +. .-.+...|+|.+....
T Consensus 25 a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~ 91 (102)
T cd05768 25 VKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA 91 (102)
T ss_pred EeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence 356655678889999999875322111 1 1 134433322 11 1123457999988754
No 180
>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....
Probab=96.07 E-value=0.032 Score=29.61 Aligned_cols=52 Identities=23% Similarity=0.299 Sum_probs=29.6
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCc-E-EEccCC------eEEEeccCCCCCCeEEEEEEecCC
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRK-Q-KVFPNG------TLIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~-~-~~~~~~------~L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
.|+|.+.| +|+.++..+..... . ....++ .|.+..- +..+...++|.+.+..
T Consensus 25 ~~~P~~~i--~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~-~~~~~~~~~C~~~~~~ 84 (89)
T PF08205_consen 25 GGYPPPQI--TWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPT-REDHGKTLTCRASHPA 84 (89)
T ss_dssp EEBS-EEE--EEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETT-GGGTTEEEEEEEEETT
T ss_pred CeECCeEE--EEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcC-hHHCCeEEEEEEECCc
Confidence 47898887 89998877611111 1 111121 3444333 3346678999999875
No 181
>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain. IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.
Probab=95.99 E-value=0.096 Score=28.74 Aligned_cols=54 Identities=9% Similarity=0.135 Sum_probs=29.1
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcE-EEccC-CeEEEe---ccCCCCC-CeEEEEEEecC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQ-KVFPN-GTLIIE---NVERQSD-QATYTCVAKTA 58 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~-~~~~~-~~L~i~---~v~~~~D-~G~Y~C~~~n~ 58 (94)
+.||-.+.|+++|.|+|..+..+... ....+ ++..+. .+. ..+ ...|+|.+...
T Consensus 25 a~gFyP~~I~v~W~kng~~~~~~~~~~~~~~~~dty~~~S~L~vt-~~~~~~~ysC~V~H~ 84 (96)
T cd07697 25 LENFFPDVIQVHWREGNSPSILGSQKSEKDKDNDVYSTTSWLTVT-KDSLGKKFRCIYKHE 84 (96)
T ss_pred EEEEeCCCeEEEEEECCEECcCCeEeccEecCCCEEEEEEEEEEC-chhCCCeEEEEEEEC
Confidence 34655577888999999986543211 11222 222221 122 232 33599999874
No 182
>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins. Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.
Probab=95.90 E-value=0.028 Score=30.84 Aligned_cols=51 Identities=12% Similarity=-0.007 Sum_probs=28.1
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCcEEEccCC------eEEEeccCCCCCCeEEEEEEecCC
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRKQKVFPNG------TLIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~------~L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
.|.|...| +|+++.... .........++ .|.+... +..|...|+|.+.+..
T Consensus 26 ~gkPaa~I--sW~~~~~g~-~~~~~~~~~~gt~tv~S~l~~~P~-~~d~Gk~ltC~v~h~a 82 (95)
T cd07703 26 NGRPPARI--SWSSTLGGN-ANTTSKENGDGTVTVTSEYSLVPT-PEANGKEVTCKVEHET 82 (95)
T ss_pred CCCCCcEE--EEEcCCCCC-eeEEEEeCCCCCEEEEEEEEEecC-HHHCCCEEEEEEeCcc
Confidence 57898988 899972111 00111122233 3444333 2245568999999865
No 183
>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.
Probab=95.77 E-value=0.013 Score=33.16 Aligned_cols=23 Identities=17% Similarity=0.339 Sum_probs=19.6
Q ss_pred CeEEEeccCCCCCCeEEEEEEecC
Q psy14473 35 GTLIIENVERQSDQATYTCVAKTA 58 (94)
Q Consensus 35 ~~L~i~~v~~~~D~G~Y~C~~~n~ 58 (94)
.+|.|.+++ .+|+|.|.|.+...
T Consensus 80 ~sL~I~~l~-~~Dsg~Y~C~~~~~ 102 (119)
T cd05712 80 CSLLISDAQ-PEDSGKYFFRVELG 102 (119)
T ss_pred EEEEEccCC-hhhCeEEEEEEEcC
Confidence 369999997 79999999988653
No 184
>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain. Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.
Probab=95.75 E-value=0.0072 Score=33.41 Aligned_cols=21 Identities=19% Similarity=0.548 Sum_probs=18.5
Q ss_pred eEEEeccCCCCCCeEEEEEEec
Q psy14473 36 TLIIENVERQSDQATYTCVAKT 57 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n 57 (94)
.|.|.++. .+|+|.|.|.+.+
T Consensus 70 ~L~I~~~~-~sDsgtY~Ca~~~ 90 (104)
T cd05720 70 VLTLKNFQ-KENEGYYFCSVAS 90 (104)
T ss_pred EEEECCCC-HHHCEEEEEEEcc
Confidence 59999997 6999999998764
No 185
>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain. Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.
Probab=95.60 E-value=0.033 Score=28.47 Aligned_cols=36 Identities=17% Similarity=0.190 Sum_probs=23.1
Q ss_pred EEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecC
Q psy14473 14 QSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTA 58 (94)
Q Consensus 14 i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~ 58 (94)
+.|.+++..+... +..+.+.+-. ++.|.|+|.+.+.
T Consensus 21 i~W~~n~~~~~g~-------~~~~~~~~~~--e~~G~Y~C~~~~~ 56 (65)
T cd07692 21 IKWKKNDQVSQGS-------DEKYLSLNHF--SSSGYYHCTADNA 56 (65)
T ss_pred ceEEeCCccCCCC-------CceEEeeccC--CCCceEEEEeCCC
Confidence 3799998655432 1234444442 7899999998653
No 186
>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain. IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is
Probab=95.56 E-value=0.01 Score=33.29 Aligned_cols=21 Identities=33% Similarity=0.586 Sum_probs=18.9
Q ss_pred eEEEeccCCCCCCeEEEEEEec
Q psy14473 36 TLIIENVERQSDQATYTCVAKT 57 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n 57 (94)
+|.|.++. .+|+|.|.|.+..
T Consensus 73 sL~I~~~~-~~Dsg~Y~C~~~~ 93 (116)
T cd07706 73 SLTISALQ-LEDSAKYFCALST 93 (116)
T ss_pred EEEECCCC-HHHCEEEEEEEEC
Confidence 69999997 6999999999885
No 187
>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain. IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.
Probab=94.95 E-value=0.082 Score=30.00 Aligned_cols=55 Identities=20% Similarity=0.213 Sum_probs=29.3
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCc---EEEccC-CeEEEec---cCC--CCC-CeEEEEEEecCC
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRK---QKVFPN-GTLIIEN---VER--QSD-QATYTCVAKTAQ 59 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~---~~~~~~-~~L~i~~---v~~--~~D-~G~Y~C~~~n~~ 59 (94)
.||-...|+|+|+||+..+..... .....+ ++..+.. +.. -.| ...|+|.+....
T Consensus 28 ~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g 92 (115)
T cd05769 28 TGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYG 92 (115)
T ss_pred EeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeC
Confidence 454345678899999988754321 112222 3322211 221 112 458999998654
No 188
>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.86 E-value=0.087 Score=29.16 Aligned_cols=54 Identities=7% Similarity=0.069 Sum_probs=27.5
Q ss_pred cccC-CCCeEEEEeeCCEEcCCC-CcEEEccCCeEEEecc---CC-CCCCe-EEEEEEecCC
Q psy14473 5 LLFL-IYSYHQSFYTEGRTLPIN-RKQKVFPNGTLIIENV---ER-QSDQA-TYTCVAKTAQ 59 (94)
Q Consensus 5 ~g~P-~~~i~i~W~k~~~~l~~~-~~~~~~~~~~L~i~~v---~~-~~D~G-~Y~C~~~n~~ 59 (94)
.|+- ...+.|+|.+++.. ... .......+++..+... .. ....| .|+|.+....
T Consensus 29 ~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~ 89 (99)
T cd04986 29 SGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPE 89 (99)
T ss_pred eccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCC
Confidence 4543 45678899999865 110 0011123454443332 10 12334 5999998764
No 189
>PHA03042 CD47-like protein; Provisional
Probab=94.77 E-value=0.21 Score=32.53 Aligned_cols=57 Identities=16% Similarity=0.227 Sum_probs=33.4
Q ss_pred CCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 10 YSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 10 ~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
.++.+.|..++..+-..... ...+|.+... . .-.|+|+|.+.+.... ....+.|+..
T Consensus 49 ~~~~V~Wkf~~~~If~~n~t---n~aSL~~~f~-~-~l~GNYTCEv~~l~n~-gk~~IeLk~~ 105 (286)
T PHA03042 49 SNIHINWKFNNKVIFKKNNT---NTSSLKFNFS-K-NLSGNYTCEAINKFNK-IKNTIELQYV 105 (286)
T ss_pred cceEEEEEeCCeeEEEecCC---cceEEEEecc-c-cCCCceeEEEeecccC-ccEEEEEEEE
Confidence 45677899988765321111 1134666554 2 5689999999865432 2345566544
No 190
>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=94.50 E-value=0.29 Score=26.73 Aligned_cols=56 Identities=9% Similarity=0.093 Sum_probs=29.0
Q ss_pred cccc-CCCCeEEEEeeCCEEcCC-C-CcEEEccCCeEEEeccC--CCC---CCeEEEEEEecCC
Q psy14473 4 LLLF-LIYSYHQSFYTEGRTLPI-N-RKQKVFPNGTLIIENVE--RQS---DQATYTCVAKTAQ 59 (94)
Q Consensus 4 v~g~-P~~~i~i~W~k~~~~l~~-~-~~~~~~~~~~L~i~~v~--~~~---D~G~Y~C~~~n~~ 59 (94)
+.|+ -.+.+.++|.|++..... . .......+++..+...- ... +.-.|+|.+....
T Consensus 23 v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~ 86 (96)
T cd07696 23 VTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPD 86 (96)
T ss_pred EeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCC
Confidence 3566 456778899998643311 1 01112335554443211 012 2336999998754
No 191
>KOG4597|consensus
Probab=93.94 E-value=0.12 Score=36.15 Aligned_cols=65 Identities=20% Similarity=0.196 Sum_probs=41.7
Q ss_pred CccccCCCCeEEEEee---CCEEcCCCCcE-----EEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEE
Q psy14473 3 PLLLFLIYSYHQSFYT---EGRTLPINRKQ-----KVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71 (94)
Q Consensus 3 pv~g~P~~~i~i~W~k---~~~~l~~~~~~-----~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v 71 (94)
.+.|.+.+.| +|.+ ++..+...... .+.....|.|-+.. +.|+|.|+|.+.+..|.. .+.+.+.+
T Consensus 219 g~~G~q~r~V--~c~qv~anr~~vv~~~nq~~e~p~vtstcql~ic~ew-q~~a~w~tCs~rcg~g~~-~rdv~c~s 291 (560)
T KOG4597|consen 219 GVQGRQYRVV--TCEQVFANRENVVMRPNQTVENPVVTSTCQLVICNEW-QADAGWYTCSARCGAGFL-RRDVPCSS 291 (560)
T ss_pred cccCCcCcee--eeehhhccccceeecCccccCCcceeeeeeEEEcchh-hcCCCceeecccccccee-eccceeee
Confidence 3678888888 7865 33322111111 11223568999986 699999999999999874 44555554
No 192
>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin. IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.
Probab=93.90 E-value=0.2 Score=27.33 Aligned_cols=54 Identities=15% Similarity=0.228 Sum_probs=29.1
Q ss_pred ccccCCCCeEEEEeeCCEEcCCCCcE--EEcc-CCeEEEe---ccCCCCC---CeEEEEEEecCC
Q psy14473 4 LLLFLIYSYHQSFYTEGRTLPINRKQ--KVFP-NGTLIIE---NVERQSD---QATYTCVAKTAQ 59 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~~~~l~~~~~~--~~~~-~~~L~i~---~v~~~~D---~G~Y~C~~~n~~ 59 (94)
+.||-...|+|+|+|+|.. ...... .... +++..+. .+. ..| ...|+|.+....
T Consensus 25 a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~-~~~w~~~~~ytC~V~H~~ 87 (95)
T cd04985 25 ATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVP-ASEWKGKESFYCKVEHPS 87 (95)
T ss_pred EeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEe-HHHcCCCCcEEEEEEeCC
Confidence 3465455788899999997 322111 1112 3433322 122 133 446999998753
No 193
>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain. IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.
Probab=93.77 E-value=0.05 Score=30.71 Aligned_cols=21 Identities=24% Similarity=0.447 Sum_probs=18.4
Q ss_pred eEEEeccCCCCCCeEEEEEEec
Q psy14473 36 TLIIENVERQSDQATYTCVAKT 57 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n 57 (94)
.|.|.++. .+|+|.|.|.+..
T Consensus 77 ~L~I~~~~-~~Dsa~YyCa~~~ 97 (117)
T cd04981 77 YLQLNSLT-PEDTAVYYCARGL 97 (117)
T ss_pred EEEECCCC-HHHCEEEEEEEEc
Confidence 59999997 6999999998864
No 194
>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins. Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect
Probab=93.41 E-value=0.33 Score=26.78 Aligned_cols=51 Identities=20% Similarity=0.180 Sum_probs=28.7
Q ss_pred cccCCCCeEEEEeeCCEEcCCCCcEEEccCCe------EEEeccCCCCCCeEEEEEEecCC
Q psy14473 5 LLFLIYSYHQSFYTEGRTLPINRKQKVFPNGT------LIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l~~~~~~~~~~~~~------L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
.|.|.+.| +|+.+..... ........+|+ +.+... +..|.-.++|.+....
T Consensus 28 ~gkPaa~I--sW~~~~~G~~-~~~~~~~~ngT~TV~S~~~l~p~-r~d~G~~vtC~V~H~a 84 (97)
T cd07704 28 EGRPAADV--TWETNVYGTS-ESHSQEHPNGTTTVTSEYIWVPS-RHANGHPLTCVVSHPA 84 (97)
T ss_pred CCccCCEe--EEeCCCCCcc-ceeeecCCCCCEEEEEEEEEEeC-HHHCCcEEEEEEeCcc
Confidence 57899988 8998633221 11112233443 333333 3245568999998764
No 195
>KOG3515|consensus
Probab=93.20 E-value=0.096 Score=38.46 Aligned_cols=63 Identities=17% Similarity=0.148 Sum_probs=45.8
Q ss_pred CCCCeEEEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 8 LIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 8 P~~~i~i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
|...+ .|++.+..+. .|.....+..|......+ +.-+.|.|.+.|..+......+.+.+..+|
T Consensus 36 p~~~~--eW~h~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~~~~c~a~ns~~~~~~~~~~l~v~~~p 98 (741)
T KOG3515|consen 36 PEIDV--EWYHSTSGEH--GRYATIADPTLVTTGDVR-DTVAELNCRAFNSVGMPSRCPMILDVDYPP 98 (741)
T ss_pred CCcce--EEEecCcccc--cccccccCCceeeecchh-hhhhhhhhhhcccccCceecceeeccccCc
Confidence 44444 8999876654 344445566888888764 777899999999887766667777777776
No 196
>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins. Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.
Probab=91.95 E-value=0.8 Score=25.41 Aligned_cols=52 Identities=12% Similarity=0.078 Sum_probs=29.2
Q ss_pred ccCCCCeEEEEeeCCEEcCCCCcEE-----E-ccC-CeEEEeccCCCCCCe-EEEEEEecCC
Q psy14473 6 LFLIYSYHQSFYTEGRTLPINRKQK-----V-FPN-GTLIIENVERQSDQA-TYTCVAKTAQ 59 (94)
Q Consensus 6 g~P~~~i~i~W~k~~~~l~~~~~~~-----~-~~~-~~L~i~~v~~~~D~G-~Y~C~~~n~~ 59 (94)
++|....+|.|+|+...+....... - ... ..+.+.. .+ .|-| .|.|.|.-..
T Consensus 27 v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-tr-eD~g~~fsC~A~L~l 86 (99)
T cd07689 27 VYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TI-EDIGKVLVCRAKLHI 86 (99)
T ss_pred cccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-ch-hhCCcEEEEEEEEee
Confidence 4677677779999776654321111 0 111 2344443 34 6666 8999987543
No 197
>KOG3515|consensus
Probab=90.17 E-value=0.88 Score=33.72 Aligned_cols=71 Identities=17% Similarity=-0.022 Sum_probs=44.1
Q ss_pred CCccccCCCCeEEEEeeCCEEcCCCC--cEEEccCCe-EEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 2 PPLLLFLIYSYHQSFYTEGRTLPINR--KQKVFPNGT-LIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 2 ~pv~g~P~~~i~i~W~k~~~~l~~~~--~~~~~~~~~-L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
+|+.|+|...- +.|.+.+..+.... .+.+..++- +...++. ..|.|.|.|.+.|..|.. ...+.+.+...|
T Consensus 423 ~~~~~~p~~~~-~~w~~~~~~~~~~~g~~~~v~~~~~~~s~~~v~-~~d~g~y~~tatns~gg~-~~~~~~~~~~sp 496 (741)
T KOG3515|consen 423 LPVRGAPAERT-FYWTFRLYKLSQVDGGVVRVGAGAGLGSGVNVS-RSDGGSYGLTATNSPGGA-QAYLLLGVHTSP 496 (741)
T ss_pred CcccCCCcccc-hhheecceecccccCceEEeeccccccccceee-eccCCcceeeeccCCCce-eeEEeeccccCC
Confidence 35667765542 36888777765433 344444433 3366787 499999999999998764 334444454433
No 198
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=87.42 E-value=2 Score=29.83 Aligned_cols=37 Identities=16% Similarity=0.320 Sum_probs=24.9
Q ss_pred eEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
++.+.++. .+|+|.|.|+.........+..+.| .+.|
T Consensus 82 sf~~~Nvs-~sdEGrYrCIFYLn~~EtyrH~I~v--rVmP 118 (500)
T PHA02914 82 SFIEENIG-EHEDGDFKCIFYLGDNESHKHEILV--RKAP 118 (500)
T ss_pred EEEecCcc-cccCCcEEEEEEeCCceeEEEEEEE--EEcc
Confidence 56777787 5999999999875443444544444 4445
No 199
>PHA03282 envelope glycoprotein E; Provisional
Probab=85.07 E-value=2.8 Score=29.61 Aligned_cols=23 Identities=26% Similarity=0.527 Sum_probs=20.1
Q ss_pred cCCeEEEeccCCCCCCeEEEEEEe
Q psy14473 33 PNGTLIIENVERQSDQATYTCVAK 56 (94)
Q Consensus 33 ~~~~L~i~~v~~~~D~G~Y~C~~~ 56 (94)
.|++|.|.++. .+|+|.|+..+.
T Consensus 122 ~n~tl~l~~a~-~~DsG~Y~L~~~ 144 (540)
T PHA03282 122 VNGTLVLREAR-ETDSGMYVLSVS 144 (540)
T ss_pred ecceEEEeecc-ccCCceEEEEec
Confidence 48899999997 699999999864
No 200
>PHA03286 envelope glycoprotein E; Provisional
Probab=82.48 E-value=10 Score=26.81 Aligned_cols=37 Identities=19% Similarity=0.172 Sum_probs=29.9
Q ss_pred CeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 35 GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 35 ~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
..|.|.+++ ..++|.|+.-..|..|......+.|.|.
T Consensus 127 ~~L~I~nAt-~qnaGiYtly~rnd~~~~~~~vflVtV~ 163 (492)
T PHA03286 127 KELTILNAS-SQNAGIYIRYSRNGTRTAVMDVLVVWVS 163 (492)
T ss_pred CceEEeecc-ccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence 569999998 5999999999999877765556666664
No 201
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=81.94 E-value=0.44 Score=33.19 Aligned_cols=40 Identities=28% Similarity=0.453 Sum_probs=0.0
Q ss_pred cCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEe
Q psy14473 33 PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73 (94)
Q Consensus 33 ~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~ 73 (94)
.++.|.|.+++ .+|+|.|+....+..+......+.|.|..
T Consensus 87 ~~~~l~i~~a~-~~~~GvY~l~~~~~~~~~~~~~~~v~v~~ 126 (439)
T PF02480_consen 87 NKGGLSILNAT-EQDSGVYTLYVRNDSGWAHQSVVFVTVKG 126 (439)
T ss_dssp -----------------------------------------
T ss_pred cCCceEEeccc-cccCeeEEEEecCCCCceEEEEEEEEEcC
Confidence 35679999998 59999999999877766555556666654
No 202
>PHA03283 envelope glycoprotein E; Provisional
Probab=81.13 E-value=7.7 Score=27.85 Aligned_cols=39 Identities=15% Similarity=0.071 Sum_probs=29.8
Q ss_pred CeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 35 GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 35 ~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
+.|.|.+++ .+++|.|+.-..+..+ .....+.|+|..++
T Consensus 134 ~~l~I~~at-~~~aGVYtly~r~d~~-~~~~vflvtVk~~~ 172 (542)
T PHA03283 134 SVLQIQRAT-PNIAGVYTLHVSSDGM-MKHSVFFVTVKKPP 172 (542)
T ss_pred CeeEEEecc-cccCeEEEEEecCCCc-eEEEEEEEEecCCC
Confidence 579999998 6999999999998766 34445667776533
No 203
>PHA02865 MHC-like TNF binding protein; Provisional
Probab=80.83 E-value=5 Score=27.17 Aligned_cols=15 Identities=13% Similarity=0.038 Sum_probs=11.6
Q ss_pred cccCCCCeEEEEeeC
Q psy14473 5 LLFLIYSYHQSFYTE 19 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~ 19 (94)
.||=...|.++|.|+
T Consensus 224 ~GFYP~~I~v~W~kd 238 (338)
T PHA02865 224 DSHYPSSVAAKWYNS 238 (338)
T ss_pred EeEeCCccEEEEEec
Confidence 466567778899999
No 204
>KOG3611|consensus
Probab=77.19 E-value=12 Score=28.04 Aligned_cols=41 Identities=24% Similarity=0.363 Sum_probs=26.5
Q ss_pred cCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEec
Q psy14473 33 PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGI 74 (94)
Q Consensus 33 ~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~ 74 (94)
..|.+.+..++ ..|.|.|.|.+....-......+.+.+..+
T Consensus 610 ~~G~lll~~~q-~~~~G~y~c~~~e~~~~~~~~~~~~~~~~~ 650 (737)
T KOG3611|consen 610 DEGGLVLLSVQ-KLDGGTYPCYADESSFVSTVISVNLHVARP 650 (737)
T ss_pred ccCceeEEEEe-eccCcccccccccCccccceEEEeeeecCc
Confidence 45668888887 599999999988643222233444444433
No 205
>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased
Probab=76.66 E-value=2.4 Score=24.21 Aligned_cols=19 Identities=16% Similarity=0.487 Sum_probs=16.5
Q ss_pred eEEEeccCCCCCCeEEEEEE
Q psy14473 36 TLIIENVERQSDQATYTCVA 55 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~ 55 (94)
+|.+.++. .+|++.|.|..
T Consensus 75 ~L~l~~L~-a~DTa~Y~Ca~ 93 (115)
T cd05721 75 NFTLQNLR-ANQTDIYFCKI 93 (115)
T ss_pred EEEEcCCC-HHHCeEEEEEe
Confidence 58999996 79999999954
No 206
>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds. There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....
Probab=74.88 E-value=10 Score=19.99 Aligned_cols=23 Identities=17% Similarity=0.287 Sum_probs=16.6
Q ss_pred eEEEeccCCCCCCeEEEEEE-ecCC
Q psy14473 36 TLIIENVERQSDQATYTCVA-KTAQ 59 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~-~n~~ 59 (94)
.+...... ..|+|...|.| .+..
T Consensus 44 ~~~~~~~~-~~d~G~w~C~a~~~~~ 67 (80)
T PF05790_consen 44 LVSTFTPT-TEDSGTWVCTASDNEP 67 (80)
T ss_dssp EEEEESBT-CGGSEEEEEEEEECTT
T ss_pred EEEEecCC-CCCCEEEEEEEcCCce
Confidence 44555665 59999999999 4543
No 207
>PHA03189 UL14 tegument protein; Provisional
Probab=72.11 E-value=13 Score=24.98 Aligned_cols=17 Identities=24% Similarity=0.415 Sum_probs=13.6
Q ss_pred CCCCeEEEEEEecCCCc
Q psy14473 45 QSDQATYTCVAKTAQGY 61 (94)
Q Consensus 45 ~~D~G~Y~C~~~n~~g~ 61 (94)
-+.+|.|.|+..|....
T Consensus 142 t~taG~Y~CvLrN~tHg 158 (348)
T PHA03189 142 TSTAGMYECVLRNETHG 158 (348)
T ss_pred ecccceEEEEeccccce
Confidence 37799999999997533
No 208
>PF11049 KSHV_K1: Glycoprotein K1 of Kaposi's sarcoma-associated herpes virus; InterPro: IPR021022 This is a highly glycosylated cytoplasmic and membrane protein similar to the immunoglobulin receptor family that is expressed as an inducible early-lytic-cycle gene product in primary effusion lymphoma cell-lines. This domain would appear to be the cytoplasmic region of the protein [].
Probab=70.13 E-value=7.6 Score=19.97 Aligned_cols=47 Identities=21% Similarity=0.419 Sum_probs=28.8
Q ss_pred EEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 14 QSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 14 i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
++||-++..|. ++ ...++.+. .-.++|+|+...+. +.++.+.....|
T Consensus 13 iswYcN~TRLl-----Rl-t~~Tlt~~-----~ltcNFtCV~qSGh----~hSiWItW~~qP 59 (71)
T PF11049_consen 13 ISWYCNGTRLL-----RL-TQQTLTVV-----TLTCNFTCVGQSGH----RHSIWITWYAQP 59 (71)
T ss_pred ccEEECCceee-----ee-cCCeEeee-----eeeEEeeecCCCCC----CceEEEEEcCch
Confidence 37999887652 22 22355543 34578999876654 346677776666
No 209
>PHA02982 hypothetical protein; Provisional
Probab=69.23 E-value=12 Score=23.98 Aligned_cols=25 Identities=24% Similarity=0.509 Sum_probs=21.4
Q ss_pred CCeEEEeccCCCCCCeEEEEEEecCC
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
+.+|.|.++. .+..|-|+|.+....
T Consensus 99 ~STLTIkk~~-i~N~GCYtc~~ks~~ 123 (251)
T PHA02982 99 SSTFTMKKPD-PQNLGCFTCEAKDAE 123 (251)
T ss_pred ceeEEeccCC-cccCCceEEEEecCC
Confidence 4689999996 799999999998754
No 210
>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []. EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.
Probab=68.88 E-value=27 Score=22.17 Aligned_cols=49 Identities=16% Similarity=0.146 Sum_probs=27.3
Q ss_pred CCCCeEEEEeeCCEEcCCCCcEEE-----ccCCeEEEeccCCCCC-Ce--EEEEEEe
Q psy14473 8 LIYSYHQSFYTEGRTLPINRKQKV-----FPNGTLIIENVERQSD-QA--TYTCVAK 56 (94)
Q Consensus 8 P~~~i~i~W~k~~~~l~~~~~~~~-----~~~~~L~i~~v~~~~D-~G--~Y~C~~~ 56 (94)
|...+++.|.-++........... ...|...|++...+++ .| .|+|...
T Consensus 102 P~~~v~l~W~v~d~~~~~~~~~~~~g~C~~~pglvnirs~~pls~~~~~~~YtC~l~ 158 (211)
T PF02124_consen 102 PRGNVTLRWSVGDDPSPAPAATEITGVCAEHPGLVNIRSRRPLSDEDGPVEYTCRLI 158 (211)
T ss_pred eCCCeEEEEEECCccCCCCCceeecCcccCCcceeEeecccCCCccCCceeEEEEEe
Confidence 445567789877665433222222 1235566665543344 35 8999876
No 211
>PHA03281 envelope glycoprotein E; Provisional
Probab=60.66 E-value=36 Score=24.92 Aligned_cols=40 Identities=23% Similarity=0.301 Sum_probs=28.9
Q ss_pred CCeEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEec
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGI 74 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~ 74 (94)
.+.|.|.+++ ..++|.|+.-.....|......+.|+|..+
T Consensus 297 ~~vL~I~nAT-~~naGVYtly~rg~~G~s~~svfLVtVkg~ 336 (642)
T PHA03281 297 PGVLKFEHME-AHHAGVYIWNLQGSDGENMYATFLVKLKGD 336 (642)
T ss_pred CCeeEEEecc-cccceeEEEEecCCCCcceeEEEEEEecCC
Confidence 4689999998 699999998887655544443555666543
No 212
>PHA03282 envelope glycoprotein E; Provisional
Probab=57.70 E-value=13 Score=26.57 Aligned_cols=23 Identities=17% Similarity=0.475 Sum_probs=19.6
Q ss_pred eEEEeccCCCCCCeEEEEEEe-cCC
Q psy14473 36 TLIIENVERQSDQATYTCVAK-TAQ 59 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~-n~~ 59 (94)
.|++.++. .+++|.|.|++. |++
T Consensus 334 dL~F~nAp-~saSGLYVfVl~yNGH 357 (540)
T PHA03282 334 NLQLRDAS-EASGGLYVCVVYVNGH 357 (540)
T ss_pred ceEecCCC-cccCceEEEEEEECCe
Confidence 69999997 699999999987 554
No 213
>COG5475 Uncharacterized small protein [Function unknown]
Probab=54.08 E-value=27 Score=17.31 Aligned_cols=23 Identities=22% Similarity=0.381 Sum_probs=17.0
Q ss_pred eEEEeccCCCCCCeEEEEEEecCCCc
Q psy14473 36 TLIIENVERQSDQATYTCVAKTAQGY 61 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~~g~ 61 (94)
.+.++..+ +| |.|.|.-.+..|.
T Consensus 19 ~Mtvs~~s--s~-Gmy~C~Wf~g~g~ 41 (60)
T COG5475 19 RMTVSGYS--SD-GMYECRWFDGYGV 41 (60)
T ss_pred eEEEeccc--cC-CeEEEEEecCCCc
Confidence 56666653 33 9999999998864
No 214
>PHA03286 envelope glycoprotein E; Provisional
Probab=53.01 E-value=17 Score=25.74 Aligned_cols=23 Identities=22% Similarity=0.414 Sum_probs=19.5
Q ss_pred eEEEeccCCCCCCeEEEEEEe-cCC
Q psy14473 36 TLIIENVERQSDQATYTCVAK-TAQ 59 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~-n~~ 59 (94)
+|.+.++. .+|+|.|.|++. |+.
T Consensus 308 nL~f~nA~-~s~SGLYVfVl~yNGH 331 (492)
T PHA03286 308 SFRLANAQ-PTDAGLYVVVALYNGR 331 (492)
T ss_pred ceeecCCC-cccCceEEEEEEECCc
Confidence 68999997 699999999987 554
No 215
>PHA03290 envelope glycoprotein I; Provisional
Probab=52.56 E-value=59 Score=22.26 Aligned_cols=38 Identities=8% Similarity=-0.006 Sum_probs=25.0
Q ss_pred eEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEecC
Q psy14473 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~~p 75 (94)
-|.|.+.. .+|+|.|...++-.... ...-+.+.+.+.|
T Consensus 130 LL~I~~P~-~~DSGiY~LRV~Ldga~-~sDvF~lsv~Vyp 167 (357)
T PHA03290 130 IFKINKPG-IEDAGIYLLLVQLDHSR-LFDGFFLGLNVYP 167 (357)
T ss_pred EEEeCCCC-cccCeeEEEEEEeCCCc-ccceEEEEEEEec
Confidence 47788886 79999999988854322 2334455555544
No 216
>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein. gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.
Probab=50.24 E-value=14 Score=26.04 Aligned_cols=23 Identities=22% Similarity=0.226 Sum_probs=16.8
Q ss_pred CeEEEeccCCCCCCeEEEEEEe-cC
Q psy14473 35 GTLIIENVERQSDQATYTCVAK-TA 58 (94)
Q Consensus 35 ~~L~i~~v~~~~D~G~Y~C~~~-n~ 58 (94)
-.|++.++. .+++|.|.|++. |+
T Consensus 269 ~~l~f~~a~-~~~sGLYv~V~~~ng 292 (439)
T PF02480_consen 269 VDLQFTNAP-ESASGLYVFVVYYNG 292 (439)
T ss_dssp SSEEESS---GGG-EEEEEEEEETT
T ss_pred cceEecCCC-cccCceEEEEEEECC
Confidence 369999998 599999999987 54
No 217
>PF01688 Herpes_gI: Alphaherpesvirus glycoprotein I; InterPro: IPR002874 This family consists of glycoprotein I from various members of the alphaherpesvirinae. These include Human herpesvirus 1 (HHV-1), Human herpesvirus 3 (HHV-3) and Suid herpesvirus 1 (Pseudorabies virus). Glycoprotein I (gI) is important during natural infection, mutants lacking gI produce smaller lesions at the site of infection and show reduced neuronal spread []. gI forms a heterodimeric complex with gE; this complex displays Fc receptor activity (binds to the Fc region of immunoglobulin) []. Glycoproteins are also important in the production of virus-neutralizing antibodies and cell mediated immunity []. The alphaherpesviridae have a dsDNA genome and have no RNA stage during viral replication.; GO: 0033643 host cell part
Probab=48.26 E-value=61 Score=19.68 Aligned_cols=22 Identities=23% Similarity=0.143 Sum_probs=18.2
Q ss_pred eEEEeccCCCCCCeEEEEEEecC
Q psy14473 36 TLIIENVERQSDQATYTCVAKTA 58 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~ 58 (94)
-|.|.+.. .+|+|.|.-.++-.
T Consensus 125 lL~i~~p~-~~dsG~Y~lRV~l~ 146 (161)
T PF01688_consen 125 LLRIRNPR-PEDSGIYYLRVWLD 146 (161)
T ss_pred EEEeCCCC-cccceEEEEEEEEC
Confidence 38888886 79999999988754
No 218
>PHA02914 Immunoglobulin-like domain protein; Provisional
Probab=47.62 E-value=16 Score=25.59 Aligned_cols=24 Identities=25% Similarity=0.325 Sum_probs=21.0
Q ss_pred CCeEEEeccCCCCCCeEEEEEEecC
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKTA 58 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n~ 58 (94)
+.+|.|..+. .+..|-|+|.+..+
T Consensus 345 ~STLTIkka~-I~N~GCY~~~a~~g 368 (500)
T PHA02914 345 NSTLTIKKAH-INNAGCYEAQAFMG 368 (500)
T ss_pred hceEEeeeEE-EEcCCceEEEEecC
Confidence 5689999996 89999999999865
No 219
>PHA03283 envelope glycoprotein E; Provisional
Probab=43.21 E-value=31 Score=24.99 Aligned_cols=24 Identities=21% Similarity=0.272 Sum_probs=19.8
Q ss_pred CeEEEeccCCCCCCeEEEEEEe-cCC
Q psy14473 35 GTLIIENVERQSDQATYTCVAK-TAQ 59 (94)
Q Consensus 35 ~~L~i~~v~~~~D~G~Y~C~~~-n~~ 59 (94)
-.|++.++. .+++|.|.|++. |+.
T Consensus 315 v~L~f~nap-~~~SGLYVfVv~yNgH 339 (542)
T PHA03283 315 VDLLFKNAP-ASASGLYVFVLLYNGH 339 (542)
T ss_pred cceEeccCC-cccCceEEEEEEECCe
Confidence 369999997 699999999987 543
No 220
>PHA03240 envelope glycoprotein M; Provisional
Probab=40.77 E-value=31 Score=22.13 Aligned_cols=20 Identities=40% Similarity=0.536 Sum_probs=16.8
Q ss_pred cCCeEEEeccCCCCCCeEEEE
Q psy14473 33 PNGTLIIENVERQSDQATYTC 53 (94)
Q Consensus 33 ~~~~L~i~~v~~~~D~G~Y~C 53 (94)
.|.+|.|.++. .+|.|+|.-
T Consensus 103 ~NstL~i~~vn-~sd~~nYcr 122 (258)
T PHA03240 103 HNSTLIIAHLN-LSDAGEYCR 122 (258)
T ss_pred ccceEEEEEEe-ecCcchhhh
Confidence 47799999997 799999943
No 221
>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs). A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.
Probab=40.77 E-value=57 Score=17.13 Aligned_cols=39 Identities=23% Similarity=0.353 Sum_probs=24.6
Q ss_pred EEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCce
Q psy14473 15 SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYS 62 (94)
Q Consensus 15 ~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~ 62 (94)
.|+-|++.+.... ....+.+ .....|.|+..+....|..
T Consensus 46 ~W~vdg~~~g~~~-----~~~~~~~----~~~~~G~h~l~vvD~~G~~ 84 (89)
T PF06832_consen 46 YWFVDGEPLGTTQ-----PGHQLFW----QPDRPGEHTLTVVDAQGRS 84 (89)
T ss_pred EEEECCEEcccCC-----CCCeEEe----CCCCCeeEEEEEEcCCCCE
Confidence 7999998873221 1123332 2357899999888777754
No 222
>PHA03292 envelope glycoprotein I; Provisional
Probab=39.48 E-value=1.1e+02 Score=21.47 Aligned_cols=23 Identities=22% Similarity=0.257 Sum_probs=18.7
Q ss_pred eEEEeccCCCCCCeEEEEEEecCC
Q psy14473 36 TLIIENVERQSDQATYTCVAKTAQ 59 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~~ 59 (94)
-|.|.+.. ..|+|.|...++-..
T Consensus 129 LL~I~~P~-~~DSGiY~LRV~Ldg 151 (413)
T PHA03292 129 LLNITGPQ-PADSGAYILRVKLDH 151 (413)
T ss_pred EEEeCCCC-cccceeEEEEEEeCC
Confidence 57888886 799999999988543
No 223
>PF11327 DUF3129: Protein of unknown function (DUF3129); InterPro: IPR021476 This eukaryotic family of proteins has no known function.
Probab=39.07 E-value=86 Score=19.38 Aligned_cols=25 Identities=20% Similarity=0.465 Sum_probs=16.5
Q ss_pred ccCCe--EEEeccCCCCCCeEEEEEEec
Q psy14473 32 FPNGT--LIIENVERQSDQATYTCVAKT 57 (94)
Q Consensus 32 ~~~~~--L~i~~v~~~~D~G~Y~C~~~n 57 (94)
..+++ +.++.+. .+-+|.|+|....
T Consensus 88 ~~gG~i~mt~hQVN-~DGaGP~~C~iD~ 114 (184)
T PF11327_consen 88 TAGGSISMTIHQVN-ADGAGPFTCDIDE 114 (184)
T ss_pred cCCCEEEEEEEEec-CCCCcCeEEEECC
Confidence 34554 4556675 3558999998864
No 224
>COG4953 PbpC Membrane carboxypeptidase/penicillin-binding protein PbpC [Cell envelope biogenesis, outer membrane]
Probab=37.72 E-value=1.1e+02 Score=23.28 Aligned_cols=42 Identities=19% Similarity=0.291 Sum_probs=26.7
Q ss_pred EEEeeCCEEcCCCCcEEEccCCeEEEeccCCCCCCeEEEEEEecCCCceee
Q psy14473 14 QSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR 64 (94)
Q Consensus 14 i~W~k~~~~l~~~~~~~~~~~~~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~ 64 (94)
+.|+-+|..+....+ ++.... ...+.|.|+..+....|...+
T Consensus 685 ~~W~lng~~l~~~~~-----~~~~~w----~~~~~G~~~ltVid~~G~~~s 726 (733)
T COG4953 685 IYWFLNGEPLGEASR-----NRPVTW----KPEDAGYYKLTVIDASGRSAS 726 (733)
T ss_pred eEEEeCCcCcccccc-----CCccee----ccCCCCeEEEEEEccCCceee
Confidence 368888887754322 112221 247799999999888776443
No 225
>PRK09919 anti-adapter protein IraM; Provisional
Probab=37.03 E-value=77 Score=18.12 Aligned_cols=18 Identities=17% Similarity=0.121 Sum_probs=12.2
Q ss_pred EEEeeCCEEcCCCCcEEE
Q psy14473 14 QSFYTEGRTLPINRKQKV 31 (94)
Q Consensus 14 i~W~k~~~~l~~~~~~~~ 31 (94)
|.||+.+.-|........
T Consensus 30 ilWY~~d~~L~pG~~i~~ 47 (114)
T PRK09919 30 ILWYQADIFLPPGSIITP 47 (114)
T ss_pred EEEEeeeEEeCCCCEEEE
Confidence 369998877766655444
No 226
>PHA03281 envelope glycoprotein E; Provisional
Probab=37.00 E-value=43 Score=24.56 Aligned_cols=23 Identities=13% Similarity=0.223 Sum_probs=19.3
Q ss_pred eEEEeccCCCCCCeEEEEEEe-cCC
Q psy14473 36 TLIIENVERQSDQATYTCVAK-TAQ 59 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~-n~~ 59 (94)
.|.+.++. .+++|.|.|++. |+.
T Consensus 476 dL~F~nAp-asaSGLYVfVl~yNGH 499 (642)
T PHA03281 476 ALKFVDAA-ESLSGLYVFIIHFNGH 499 (642)
T ss_pred ceEeccCC-cccCceEEEEEEECCe
Confidence 69999997 699999999987 543
No 227
>PF02440 Adeno_E3_CR1: Adenovirus E3 region protein CR1; InterPro: IPR003471 Early region 3 (E3) of human adenoviruses (Ads) codes for proteins that appear to control viral interactions with the host []. This region called CR1 (conserved region 1) [] is found three times in Human adenovirus 19 (a subgroup D virus) 49 Kd protein in the E3 region. CR1 is also found in the 20.1 Kd protein of subgroup B adenoviruses. The function of this 80 amino acid region is unknown. This region is probably a divergent immunoglobulin domain.
Probab=36.60 E-value=62 Score=16.37 Aligned_cols=11 Identities=9% Similarity=-0.179 Sum_probs=6.2
Q ss_pred ccCCCCeEEEEee
Q psy14473 6 LFLIYSYHQSFYT 18 (94)
Q Consensus 6 g~P~~~i~i~W~k 18 (94)
|-+...+ +||+
T Consensus 12 Gp~~~~V--~Wy~ 22 (63)
T PF02440_consen 12 GPPDGPV--TWYK 22 (63)
T ss_pred CCCCCce--EEEE
Confidence 3344455 7984
No 228
>PHA03289 envelope glycoprotein I; Provisional
Probab=36.59 E-value=1.4e+02 Score=20.46 Aligned_cols=36 Identities=19% Similarity=0.123 Sum_probs=23.4
Q ss_pred eEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEEe
Q psy14473 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~~ 73 (94)
-|.|.+.. ..|+|.|.-.++-.... ...-+.+.+.+
T Consensus 123 LL~I~~Pr-~~DSGiYyLRV~Ldga~-~sDvF~lsv~V 158 (352)
T PHA03289 123 LLTIIEPR-MSDTGIYYIRVSLAGRN-KSDIFRTSVFV 158 (352)
T ss_pred EEEeCCCC-cccCeeEEEEEEeCCCc-cCceEEEEEEE
Confidence 47778886 79999999988854322 22334444443
No 229
>PHA03291 envelope glycoprotein I; Provisional
Probab=32.33 E-value=1.7e+02 Score=20.33 Aligned_cols=35 Identities=6% Similarity=-0.006 Sum_probs=23.5
Q ss_pred eEEEeccCCCCCCeEEEEEEecCCCceeeeEEEEEEE
Q psy14473 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~~g~~~~~~~~l~v~ 72 (94)
-|.|.+.. ..|+|.|...++-.... ....+.|.+.
T Consensus 130 LL~i~~P~-~~DsGiYvLRV~vdgat-~adlF~lg~~ 164 (401)
T PHA03291 130 LLRARGAA-RAVVGLYVLRVWVEGAT-NASLFPLGLA 164 (401)
T ss_pred EEEecCCC-cccceeEEEEEEeCCCc-ccceEEEeee
Confidence 47777886 69999999998865433 2224445555
No 230
>PF11781 RRN7: RNA polymerase I-specific transcription initiation factor Rrn7; InterPro: IPR021752 Rrn7 is a transcription binding factor that associates strongly with both Rrn6 and Rrn11 to form a complex which itself binds the TATA-binding protein and is required for transcription by the core domain of the RNA PolI promoter [],[].
Probab=31.22 E-value=25 Score=15.57 Aligned_cols=10 Identities=40% Similarity=0.630 Sum_probs=8.1
Q ss_pred CCCCeEEEEE
Q psy14473 45 QSDQATYTCV 54 (94)
Q Consensus 45 ~~D~G~Y~C~ 54 (94)
..+.|.|.|.
T Consensus 20 ~~~dG~~yC~ 29 (36)
T PF11781_consen 20 YSDDGFYYCD 29 (36)
T ss_pred EccCCEEEhh
Confidence 3789999994
No 231
>PF06214 SLAM: Signaling lymphocytic activation molecule (SLAM) protein; InterPro: IPR010407 This entry is found in several mammalian signalling lymphocytic activation molecule (SLAM) proteins. Optimal T cell activation and expansion require engagement of the TCR plus co-stimulatory signals delivered through accessory molecules. SLAM, a 70 kDa co-stimulatory molecule belonging to the Ig superfamily, is defined as a human cell surface molecule that mediates CD28-independent proliferation of human T cells and IFN-gamma production by human Th1 and Th2 clones []. SLAM has also been recognised as a receptor for Measles virus [].; GO: 0004872 receptor activity, 0046649 lymphocyte activation, 0009986 cell surface, 0016021 integral to membrane; PDB: 3ALX_D 3ALZ_B 3ALW_A.
Probab=30.97 E-value=73 Score=18.26 Aligned_cols=27 Identities=22% Similarity=0.178 Sum_probs=17.1
Q ss_pred cEEE-ccCCeEEEeccCCCCCCeEEEEEE
Q psy14473 28 KQKV-FPNGTLIIENVERQSDQATYTCVA 55 (94)
Q Consensus 28 ~~~~-~~~~~L~i~~v~~~~D~G~Y~C~~ 55 (94)
+++. ..|-+|.|.... ..|+|.|.-..
T Consensus 95 gY~FhlEnLsL~Il~Sr-kE~EGWYfmtl 122 (126)
T PF06214_consen 95 GYKFHLENLSLEILESR-KEDEGWYFMTL 122 (126)
T ss_dssp SEEEETTTTEEEETT---GGG-EEEEEEE
T ss_pred ccEEecccceeehhccc-cccCceEEEEe
Confidence 4444 356689998886 59999997644
No 232
>PHA03271 envelope glycoprotein C; Provisional
Probab=29.47 E-value=52 Score=23.34 Aligned_cols=18 Identities=17% Similarity=0.071 Sum_probs=15.0
Q ss_pred cCCCCeEEEEeeCCEEcC
Q psy14473 7 FLIYSYHQSFYTEGRTLP 24 (94)
Q Consensus 7 ~P~~~i~i~W~k~~~~l~ 24 (94)
||..+..++|++||.+..
T Consensus 273 YPP~SvrlrWf~nG~~V~ 290 (490)
T PHA03271 273 YPPGSVYVSWRQNGNIAT 290 (490)
T ss_pred cCCCceEEEEEeCCcccc
Confidence 577788889999998874
No 233
>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins. Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ
Probab=27.59 E-value=1.2e+02 Score=16.88 Aligned_cols=49 Identities=14% Similarity=0.123 Sum_probs=25.2
Q ss_pred ccccCCCCeEEEEeeC--CEEcCCCCcEEEccCCeEEE------eccCCCCCCeEEEEEEecC
Q psy14473 4 LLLFLIYSYHQSFYTE--GRTLPINRKQKVFPNGTLII------ENVERQSDQATYTCVAKTA 58 (94)
Q Consensus 4 v~g~P~~~i~i~W~k~--~~~l~~~~~~~~~~~~~L~i------~~v~~~~D~G~Y~C~~~n~ 58 (94)
..|.|...| +|.-+ |.. +....-..+|+..+ .... ..|.-.-+|++...
T Consensus 30 a~GrPpa~I--tW~t~l~G~~---etq~~~~~~GT~TV~S~y~lVPs~-~~~gk~lTCvV~h~ 86 (98)
T cd05890 30 ANGKPPSVV--RWDTRLKGEA---EFQEIRNQNGTVTVISRYRLVPSR-EAHKQKLTCIVNYR 86 (98)
T ss_pred CCCcCCcEe--EEEccCCCce---eeeeeCCCCCCEEEEEEEEEeECH-HHcCCEeEEEEEec
Confidence 468898888 79742 221 00111123343222 2232 35666789988754
No 234
>cd01617 DCX Ubiquitin-like domain of DCX. DCX The ubiquitin-like DCX domain is present in tandem within the N-terminal half of the doublecortin protein. Doublecortin is expressed in migrating neurons. Mutations in the gene encoding doublecortin cause lissencephaly in males and 'double-cortex syndrome' in females.
Probab=27.50 E-value=67 Score=16.73 Aligned_cols=25 Identities=12% Similarity=0.262 Sum_probs=16.5
Q ss_pred cCCeEEEeccCCCCCCeEEEEEEec
Q psy14473 33 PNGTLIIENVERQSDQATYTCVAKT 57 (94)
Q Consensus 33 ~~~~L~i~~v~~~~D~G~Y~C~~~n 57 (94)
.+|.-.+.....+.|.|.|.|....
T Consensus 52 ~~g~~~v~~~~~l~~g~~yVa~g~e 76 (80)
T cd01617 52 LDGGHRVSLLDELEDGGVYVASGRE 76 (80)
T ss_pred CCCCeEeccHHHhcCCCEEEEECCC
Confidence 3555555555557888899887544
No 235
>PHA03269 envelope glycoprotein C; Provisional
Probab=26.33 E-value=2.7e+02 Score=20.48 Aligned_cols=39 Identities=15% Similarity=0.122 Sum_probs=25.1
Q ss_pred eEEEeccCCCCCCeEEEEEEecCC-C-ceeeeEEEEEEEecC
Q psy14473 36 TLIIENVERQSDQATYTCVAKTAQ-G-YSSRGTLEVQVMGIN 75 (94)
Q Consensus 36 ~L~i~~v~~~~D~G~Y~C~~~n~~-g-~~~~~~~~l~v~~~p 75 (94)
.|.|.++. ..++|.|+-...+.. + ......+.|.+.-+|
T Consensus 290 pL~I~slt-aATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~P 330 (566)
T PHA03269 290 SLHILSLD-ASTEGTYIWRVIHTANKNVINEHHITVMSYKRP 330 (566)
T ss_pred ceEEeecc-cccCceEEEEEecCCCCceeeeeEEEEEEecCC
Confidence 48999998 699999998765422 1 122345555555455
No 236
>COG3151 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=25.08 E-value=63 Score=19.11 Aligned_cols=19 Identities=21% Similarity=0.413 Sum_probs=15.7
Q ss_pred CCccccCCCCeEEEEeeCC
Q psy14473 2 PPLLLFLIYSYHQSFYTEG 20 (94)
Q Consensus 2 ~pv~g~P~~~i~i~W~k~~ 20 (94)
++..++|.|+.++.-|+|-
T Consensus 71 ~~ls~~p~Psm~VRlYhDA 89 (147)
T COG3151 71 PALSYWPLPSMTVRLYHDA 89 (147)
T ss_pred CCCCCCCCCceEeeeehhh
Confidence 4678899999988888874
No 237
>PF08329 ChitinaseA_N: Chitinase A, N-terminal domain; InterPro: IPR013540 This domain is found in a number of bacterial chitinases and similar viral proteins. It is organised into a fibronectin III module domain-like fold, comprising only beta strands. Its function is not known, but it may be involved in interaction with the enzyme substrate, chitin [, ]. It is separated by a hinge region from the catalytic domain (IPR001223 from INTERPRO); this hinge region is probably mobile, allowing the N-terminal domain to have different relative positions in solution []. ; GO: 0004568 chitinase activity; PDB: 2WLY_A 1EDQ_A 2WM0_A 1X6N_A 1NH6_A 2WK2_A 1EHN_A 2WLZ_A 1EIB_A 1FFR_A ....
Probab=24.75 E-value=1.6e+02 Score=17.33 Aligned_cols=42 Identities=21% Similarity=0.254 Sum_probs=16.9
Q ss_pred CCCeEEEE--EEecCCCceeeeEEEEEEEecC--C-CCCCCCccccc
Q psy14473 46 SDQATYTC--VAKTAQGYSSRGTLEVQVMGIN--E-KPFSGLLPKIN 87 (94)
Q Consensus 46 ~D~G~Y~C--~~~n~~g~~~~~~~~l~v~~~p--~-~p~~~~~~~~~ 87 (94)
...|.|.- .+.|..|.+.+..+.+.|.... + .|...+..+=|
T Consensus 80 ~~gG~y~~~VeLCN~~GCS~S~~~~V~VaDTDGsHl~pL~~~~~~nN 126 (133)
T PF08329_consen 80 TKGGRYQMQVELCNADGCSTSAPVEVVVADTDGSHLAPLPYNWDENN 126 (133)
T ss_dssp -S-EEEEEEEEEEETTEEEE---EEEEEE-TTSTTS--------TTS
T ss_pred cCCCEEEEEEEEECCCCcccCCCEEEEEeCCCccccccccCcccccC
Confidence 45677654 4568888766666666665433 2 56555554444
No 238
>PF03607 DCX: Doublecortin; InterPro: IPR003533 X-linked lissencephaly is a severe brain malformation affecting males. Recently it has been demonstrated that the doublecortin gene is implicated in this disorder []. Doublecortin was found to bind to the microtubule cytoskeleton. In vivo and in vitro assays show that Doublecortin stabilises microtubules and causes bundling []. Doublecortin is a basic protein with an iso-electric point of 10, typical of microtubule-binding proteins. However, its sequence contains no known microtubule-binding domain(s). The detailed sequence analysis of Doublecortin and Doublecortin-like proteins allowed the identification of an evolutionarily conserved Doublecortin (DC) domain. This domain is found in the N terminus of proteins and consists of one or two tandemly repeated copies of an around 80 amino acids region. It has been suggested that the first DC domain of Doublecortin binds tubulin and enhances microtubule polymerisation []. Some proteins known to contain a DC domain are listed below: Doublecortin. It is required for neuronal migration []. A large number of point mutations in the human DCX gene leading to lissencephaly are located within the DC domains []. Human serine/threonine-protein kinase DCAMKL1. It is a probable kinase that may be involved in a calcium-signaling pathway controling neuronal migration in the developing brain []. Retinitis pigmentosa 1 protein. It could play a role in the differentiation of photoreceptor cells. Mutation in the human RP1 gene cause retinitis pigmentosa of type 1 []. ; GO: 0035556 intracellular signal transduction; PDB: 1UF0_A 1MG4_A 1MFW_A 2DNF_A 2XRP_I 2BQQ_A 1MJD_A.
Probab=24.32 E-value=1e+02 Score=15.04 Aligned_cols=22 Identities=14% Similarity=0.368 Sum_probs=14.9
Q ss_pred cCCeEEEeccCCCCCCeEEEEEE
Q psy14473 33 PNGTLIIENVERQSDQATYTCVA 55 (94)
Q Consensus 33 ~~~~L~i~~v~~~~D~G~Y~C~~ 55 (94)
.+| -.|.++..+.|.+.|.|..
T Consensus 34 ~~G-~~V~~l~~l~dg~~yVa~g 55 (60)
T PF03607_consen 34 LDG-KRVKSLDELEDGGSYVASG 55 (60)
T ss_dssp TTS-SEESSGGGS-TTEEEEEES
T ss_pred CCC-CEeCCHHHHCCCCEEEEEc
Confidence 355 5556666678999999973
No 239
>KOG0200|consensus
Probab=22.83 E-value=90 Score=22.87 Aligned_cols=23 Identities=35% Similarity=0.596 Sum_probs=18.9
Q ss_pred CCeEEEeccCCCCCCeEEEEEEec
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKT 57 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n 57 (94)
...+.+..+. ..|.|.|+|.+.|
T Consensus 12 ~~~~~~~~~~-~~~~~~y~~~~~~ 34 (609)
T KOG0200|consen 12 HWFLIIDSVV-PGDKGFYTCLVSN 34 (609)
T ss_pred cceEEEEEEE-ecCCccEEEEEec
Confidence 4567777776 6999999999999
No 240
>PF06491 Disulph_isomer: Disulphide isomerase; InterPro: IPR009474 This entry consists of several hypothetical bacterial proteins of unknown function.; PDB: 3FHK_F.
Probab=21.97 E-value=1.1e+02 Score=17.98 Aligned_cols=19 Identities=11% Similarity=0.155 Sum_probs=12.5
Q ss_pred cccCCCCeEEEEeeCCEEc
Q psy14473 5 LLFLIYSYHQSFYTEGRTL 23 (94)
Q Consensus 5 ~g~P~~~i~i~W~k~~~~l 23 (94)
.|+|..+-++..+|||+.+
T Consensus 90 ~~~pPSSPS~ALfKdGelv 108 (136)
T PF06491_consen 90 EPYPPSSPSIALFKDGELV 108 (136)
T ss_dssp TTS---SSEEEEEETTEEE
T ss_pred CCCCCCCchheeeeCCEEE
Confidence 5778777777889999875
No 241
>PF12690 BsuPI: Intracellular proteinase inhibitor; InterPro: IPR020481 BsuPI is a intracellular proteinase inhibitor that directly regulates the major intracellular proteinase (ISP-1) activity in vivo. It inhibits ISP-1 in the early stages of sporulation and then may be inactivated by a membrane-bound proteinase [].; PDB: 3ISY_A.
Probab=21.22 E-value=1.4e+02 Score=15.67 Aligned_cols=7 Identities=29% Similarity=0.339 Sum_probs=4.1
Q ss_pred CeEEEEE
Q psy14473 48 QATYTCV 54 (94)
Q Consensus 48 ~G~Y~C~ 54 (94)
.|.|+..
T Consensus 75 ~G~Y~~~ 81 (82)
T PF12690_consen 75 PGEYTLE 81 (82)
T ss_dssp SEEEEEE
T ss_pred CceEEEe
Confidence 5666654
No 242
>KOG3757|consensus
Probab=20.01 E-value=66 Score=21.65 Aligned_cols=24 Identities=17% Similarity=0.369 Sum_probs=17.0
Q ss_pred CCeEEEeccCCCCCCeEEEEEEec
Q psy14473 34 NGTLIIENVERQSDQATYTCVAKT 57 (94)
Q Consensus 34 ~~~L~i~~v~~~~D~G~Y~C~~~n 57 (94)
+|.-.|..+..+.|.|.|.|...+
T Consensus 81 ~G~~~I~sldeledG~sYV~ss~~ 104 (301)
T KOG3757|consen 81 DGGHRITSLDELEDGGSYVASSNE 104 (301)
T ss_pred CCCceeccHHHhhcccceeccCcc
Confidence 454555566567899999997554
Done!