RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14473
(94 letters)
>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30,
N-terminal eight IG domains...; immunoglobulin domain;
HET: NAG NDG; 4.19A {Drosophila melanogaster}
Length = 816
Score = 76.9 bits (189), Expect = 3e-18
Identities = 45/57 (78%), Positives = 49/57 (85%)
Query: 17 YTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73
+ R LPINRKQKVFPNGTLIIENVER SDQATYTCVAK +GYS+RG+LEVQVM
Sbjct: 561 ERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMV 617
Score = 45.3 bits (107), Expect = 4e-07
Identities = 15/82 (18%), Positives = 27/82 (32%), Gaps = 1/82 (1%)
Query: 12 YHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
+ + K V P+G L I V + +Y C K +R +
Sbjct: 176 HTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGR 235
Query: 72 MGINEKPFSGLLPKINKETSPS 93
+ + +P S +PK+
Sbjct: 236 L-VITEPISSAVPKVVSLAKFD 256
Score = 42.6 bits (100), Expect = 3e-06
Identities = 11/63 (17%), Positives = 23/63 (36%), Gaps = 7/63 (11%)
Query: 15 SFYTEGRTLPINRKQK------VFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLE 68
++ P K GTL ++N+ +++++ Y C A G +
Sbjct: 747 TWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNI-QKTNEGYYLCEAINGIGSGLSAVIM 805
Query: 69 VQV 71
+ V
Sbjct: 806 ISV 808
Score = 41.1 bits (96), Expect = 1e-05
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 2/46 (4%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPF 79
L IE+V++ D+ Y C + + + E+++ G + P
Sbjct: 388 ESVLRIESVKK-EDKGMYQCFVRNDRESAEASA-ELKLGGRFDPPV 431
Score = 39.9 bits (93), Expect = 3e-05
Identities = 14/61 (22%), Positives = 20/61 (32%), Gaps = 7/61 (11%)
Query: 17 YTEGRTLPINRKQKVFP-----NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
Y + + +GTLII++ D Y CV + G S L V
Sbjct: 283 YKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA-VVEDSGKYLCVVNNSVGGESVETVLTVT 341
Query: 71 V 71
Sbjct: 342 A 342
Score = 39.5 bits (92), Expect = 4e-05
Identities = 15/60 (25%), Positives = 22/60 (36%), Gaps = 6/60 (10%)
Query: 17 YTEGRTLP----INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+G+ + I + L IE VE S +TC A+ G+ L V V
Sbjct: 655 TLDGQAISEDLGITTSRVGRRGSVLTIEAVEA-SHAGNFTCHARNLAGHQQFTTPLNVYV 713
Score = 38.0 bits (88), Expect = 1e-04
Identities = 11/40 (27%), Positives = 16/40 (40%), Gaps = 2/40 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQVM 72
L I +V +D Y C+AK+ G L V +
Sbjct: 489 VSYLNITSV-HANDGGLYKCIAKSKVGVAEHSAKLNVYGL 527
Score = 34.9 bits (80), Expect = 0.002
Identities = 7/53 (13%), Positives = 18/53 (33%), Gaps = 5/53 (9%)
Query: 24 PINRKQKVFPNGTLIIENVERQ-----SDQATYTCVAKTAQGYSSRGTLEVQV 71
+ +++ +G L+ + Y C+A+ G + V+
Sbjct: 83 DVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRA 135
Score = 29.5 bits (66), Expect = 0.14
Identities = 12/53 (22%), Positives = 17/53 (32%), Gaps = 9/53 (16%)
Query: 37 LIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGLLPKINKE 89
+ + N R + VA A G TL ++K P KE
Sbjct: 1 MNMPNE-RLKWLMLFAAVALIACG---SQTLAANPPDADQKG-----PVFLKE 44
>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo
sapiens} PDB: 3p40_A*
Length = 404
Score = 60.7 bits (147), Expect = 1e-12
Identities = 11/68 (16%), Positives = 24/68 (35%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78
+ +++ NG L NV Q Q Y+C A+ ++ + + + +
Sbjct: 155 SMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRG 214
Query: 79 FSGLLPKI 86
+ P
Sbjct: 215 VAERTPSF 222
Score = 47.6 bits (113), Expect = 6e-08
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+G LP ++ + N L I NV + D Y C+A G ++ V+
Sbjct: 259 KGGDLPSDKAKFENFNKALRITNV-SEEDSGEYFCLASNKMGSIRHTISVRVKA 311
Score = 40.6 bits (95), Expect = 2e-05
Identities = 9/46 (19%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+ T+I + + S +A Y C GY + + V
Sbjct: 358 PNPNREVAGDTIIFRDTQI-SSRAVYQCNTSNEHGYLLANAFVSVL 402
Score = 36.4 bits (84), Expect = 4e-04
Identities = 15/65 (23%), Positives = 23/65 (35%), Gaps = 8/65 (12%)
Query: 17 YTEGRTLPIN---RKQKVFPNGTLIIENVE---RQSDQATYTCVAKTAQG--YSSRGTLE 68
R I R +GTL+I+ + + Y C A+ G S+R L+
Sbjct: 52 TRNSRFFNIAKDPRVSMRRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQ 111
Query: 69 VQVMG 73
V
Sbjct: 112 VSKSP 116
>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin
superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus
norvegicus}
Length = 403
Score = 57.5 bits (139), Expect = 2e-11
Identities = 12/51 (23%), Positives = 23/51 (45%), Gaps = 1/51 (1%)
Query: 22 TLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
+P + + V P+G L I + + D Y C A+ + EV+++
Sbjct: 164 PIPGDSRVVVLPSGALQISRL-QPGDSGVYRCSARNPASTRTGNEAEVRIL 213
Score = 49.1 bits (117), Expect = 2e-08
Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 2/54 (3%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
G + + ++ L I V +SD+ Y CVA+ G S L V
Sbjct: 349 NGDVVIPSDYFQIVGGSNLRILGV-VKSDEGFYQCVAENEAGNAQSSAQLIVPK 401
Score = 47.5 bits (113), Expect = 5e-08
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 19 EGRTLPI-NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+ + ++K + L+I NV D TYTCV S+ L V V
Sbjct: 258 GEEVIQLRSKKYSLLGGSNLLISNV-TDDDSGTYTCVVTYKNENISASAELTVLV 311
Score = 36.7 bits (85), Expect = 3e-04
Identities = 14/63 (22%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 19 EGRTLPINR--KQKVFPNGTLIIENVE----RQSDQATYTCVAKTAQG---YSSRGTLEV 69
+G L + +++ PNG+L+I+N+ + D+ Y C A S + V
Sbjct: 59 DGLILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMV 118
Query: 70 QVM 72
Sbjct: 119 AGP 121
>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling
protein,transferase; 2.21A {Rattus norvegicus}
Length = 192
Score = 54.7 bits (132), Expect = 6e-11
Identities = 21/55 (38%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
L N + V +G+L I NV++ D Y CVAK + G YS LEV+V
Sbjct: 137 GDSALRENSRIAVLESGSLRIHNVQK-EDAGQYRCVAKNSLGTAYSKLVKLEVEV 190
Score = 39.7 bits (93), Expect = 2e-05
Identities = 15/57 (26%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 19 EGRTLPI-NRKQKVFPNG-TLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
+ + + + + NG L I +V SD Y C A G S G L+V++
Sbjct: 44 NKILIKLFDTRYSIRENGQLLTILSV-EDSDDGIYCCTANNGVGGAVESCGALQVKM 99
>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation,
phosphorylation, disease MU neuronal development,
immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens}
PDB: 2v9q_A
Length = 212
Score = 55.2 bits (133), Expect = 6e-11
Identities = 15/55 (27%), Positives = 20/55 (36%), Gaps = 3/55 (5%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
+G L ++ G L+I R+SD Y CV G S L V
Sbjct: 149 DGSPLDDKDERITIRGGKLMITYT-RKSDAGKYVCVGTNMVGERESEVAELTVLE 202
Score = 36.7 bits (85), Expect = 3e-04
Identities = 13/48 (27%), Positives = 23/48 (47%), Gaps = 6/48 (12%)
Query: 31 VFPNGTLIIENVE----RQSDQATYTCVAKTAQG--YSSRGTLEVQVM 72
+ P+G+L + + D+ Y CVA+ G S +LEV ++
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAIL 110
>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell
adhesion, immunoglobulin domain; 3.2A {Drosophila
melanogaster} PDB: 2vra_A*
Length = 217
Score = 53.3 bits (128), Expect = 3e-10
Identities = 16/56 (28%), Positives = 26/56 (46%), Gaps = 3/56 (5%)
Query: 18 TEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
+ + + + ++ G L+I NV D+ Y C+A+ G SS L VQV
Sbjct: 153 LKAMSFGASSRVRIVDGGNLLISNV-EPIDEGNYKCIAQNLVGTRESSYAKLIVQV 207
Score = 39.1 bits (91), Expect = 4e-05
Identities = 13/52 (25%), Positives = 21/52 (40%), Gaps = 5/52 (9%)
Query: 26 NRKQKVFPNGTLIIENVE---RQSDQATYTCVAKTAQG--YSSRGTLEVQVM 72
+ F +G L ++ D Y CVAK G S +L++ V+
Sbjct: 56 KSHRVQFKDGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVL 107
>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila
melanogaster} PDB: 3pxj_A
Length = 212
Score = 53.3 bits (128), Expect = 3e-10
Identities = 17/55 (30%), Positives = 27/55 (49%), Gaps = 3/55 (5%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
+ ++ + +G L IEN R+ DQ Y CVA+ + G +S L V+V
Sbjct: 147 NQTKVDMSNPRYSLKDGFLQIENS-REEDQGKYECVAENSMGTEHSKATNLYVKV 200
Score = 37.1 bits (86), Expect = 2e-04
Identities = 15/65 (23%), Positives = 24/65 (36%), Gaps = 5/65 (7%)
Query: 19 EGRTLPIN--RKQKVFPNGT---LIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73
G+ + R + G L IE V D A Y CVA+ G + + +
Sbjct: 43 NGKKVSGTQSRYTVLEQPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYE 102
Query: 74 INEKP 78
++ P
Sbjct: 103 GDKTP 107
>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 100
Score = 50.9 bits (122), Expect = 4e-10
Identities = 23/57 (40%), Positives = 31/57 (54%), Gaps = 3/57 (5%)
Query: 19 EGRTLP-INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEVQVMG 73
EG T P + + + GTL I+N+ R SD TYTCVA ++ G S L+V G
Sbjct: 45 EGFTFPGRDPRATIQEQGTLQIKNL-RISDTGTYTCVATSSSGETSWSAVLDVTESG 100
>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor
tyrosine kinase, class III, recep ligand complex,
cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A
{Mus musculus}
Length = 290
Score = 52.0 bits (124), Expect = 1e-09
Identities = 11/60 (18%), Positives = 24/60 (40%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78
+G++LP + P + I+NV+R + C A+ + ++V +
Sbjct: 129 DGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAI 188
Score = 38.2 bits (88), Expect = 1e-04
Identities = 11/39 (28%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 33 PNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQ 70
TL I + R D + C A G ++ TL+V
Sbjct: 250 RQETLTISSA-RVDDSGVFMCYANNTFGSANVTTTLKVV 287
Score = 27.4 bits (60), Expect = 0.56
Identities = 8/29 (27%), Positives = 9/29 (31%), Gaps = 1/29 (3%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYS 62
I E E + TYTC S
Sbjct: 56 KNEWIQEKAEA-TRTGTYTCSNSNGLTSS 83
>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain,
cytokine decoy RE virus/viral protein, type-1
interferon, soluble A/B-IFNR; HET: EPE; 2.10A
{Ectromelia virus}
Length = 329
Score = 51.8 bits (123), Expect = 2e-09
Identities = 13/51 (25%), Positives = 18/51 (35%), Gaps = 3/51 (5%)
Query: 22 TLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
P+NR+ NG L I N Y C T G +G + +
Sbjct: 79 RRPLNRRV---KNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIR 126
Score = 44.0 bits (103), Expect = 9e-07
Identities = 14/73 (19%), Positives = 21/73 (28%), Gaps = 6/73 (8%)
Query: 17 YTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG-----YSSRGTLEVQV 71
Y + L I+ + LII N E D Y C + V
Sbjct: 164 YKNNQELIIDGTKYSQSGQNLIIHNPEL-EDSGRYDCYVHYDDVRIKNDIVVSRCKILTV 222
Query: 72 MGINEKPFSGLLP 84
+ + F +L
Sbjct: 223 IPSQDHRFKLILD 235
Score = 39.8 bits (92), Expect = 3e-05
Identities = 11/54 (20%), Positives = 17/54 (31%), Gaps = 1/54 (1%)
Query: 18 TEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+ I TL ENV + TYTC + T+ ++
Sbjct: 276 LDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329
>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI
cardiomyopathy, disease mutation, disulfide bond,
immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}
Length = 197
Score = 50.1 bits (120), Expect = 4e-09
Identities = 9/58 (15%), Positives = 22/58 (37%), Gaps = 4/58 (6%)
Query: 17 YTEGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+ + L + + L+++NV+R++ Y G + +E+Q
Sbjct: 138 FHGQKLLQNSENITIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195
Score = 40.8 bits (96), Expect = 8e-06
Identities = 17/56 (30%), Positives = 26/56 (46%), Gaps = 5/56 (8%)
Query: 20 GRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
G+ L +RK K+ +G TL + Q D+ YTC+A G + L +Q
Sbjct: 45 GKELIQSRKYKMSSDGRTHTLTVMTE-EQEDEGVYTCIATNEVGEVETSSKLLLQA 99
>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted
in U twenty twenty, neurogenesis, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 48.6 bits (116), Expect = 5e-09
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 19 EGRTL-PINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEVQV 71
+G + + + K NG L I + D YTC+A T G + +EVQ
Sbjct: 45 DGVLVSTQDSRIKQLENGVLQIRYA-KLGDTGRYTCIASTPSGEATWSAYIEVQE 98
>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix
bundle cytokine, receptor tyrosine kinase glycosylation;
HET: NAG BMA; 3.00A {Homo sapiens}
Length = 292
Score = 49.6 bits (118), Expect = 9e-09
Identities = 10/63 (15%), Positives = 17/63 (26%), Gaps = 1/63 (1%)
Query: 16 FYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75
GR L + P I + Y C A ++ ++V +
Sbjct: 125 VRVRGRPLMRHTNYSFSPWHGFTIHRAKF-IQSQDYQCSALMGGRKVMSISIRLKVQKVI 183
Query: 76 EKP 78
P
Sbjct: 184 PGP 186
Score = 42.6 bits (100), Expect = 3e-06
Identities = 12/48 (25%), Positives = 15/48 (31%), Gaps = 7/48 (14%)
Query: 33 PNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQVMGINEKPF 79
TL ++ V Y+CVA QG S V E
Sbjct: 243 KVLTLNLDQV-DFQHAGNYSCVASNVQGKHSTSMFFRVV-----ESAG 284
Score = 39.9 bits (93), Expect = 2e-05
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 2/54 (3%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+G P + L N + TY C S+ L V+
Sbjct: 35 DGPPSPHWTLYSDGSSSILSTNNA-TFQNTGTYRCTEPGDPLGGSAAIHLYVKD 87
>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold,
glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4
b.1.1.4 PDB: 2ncm_A 3ncm_A
Length = 191
Score = 48.7 bits (116), Expect = 1e-08
Identities = 14/56 (25%), Positives = 29/56 (51%), Gaps = 4/56 (7%)
Query: 19 EGRTLPI--NRKQKVFPNGTLIIENVERQSDQATYTCVAK-TAQGYSSRGTLEVQV 71
+GR + + + + V N L I +++ +D+ TY C + A+G + ++V V
Sbjct: 137 KGRDVILKKDVRFIVLSNNYLQIRGIKK-TDEGTYRCEGRILARGEINFKDIQVIV 191
Score = 43.3 bits (102), Expect = 1e-06
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 25 INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
I+ + TL I N D Y CV G S T+ V++
Sbjct: 52 ISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNVKI 97
>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core
protein; immunoglobulin-like domain, extracellular
matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4
Length = 98
Score = 46.7 bits (111), Expect = 2e-08
Identities = 18/54 (33%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
LP + NG L I NV + SD TY C TL VQV
Sbjct: 49 HNGKLPSRA---MDFNGILTIRNV-QPSDAGTYVCTGSNMFAMDQGTATLHVQV 98
>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor
tyrosine kinase, growth factor cytoki dimerization,
transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*
Length = 524
Score = 48.9 bits (116), Expect = 2e-08
Identities = 9/60 (15%), Positives = 22/60 (36%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78
+G+ LP + + P ++I++V+R + C ++V +
Sbjct: 152 QGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAV 211
Score = 43.5 bits (102), Expect = 1e-06
Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 13/83 (15%)
Query: 17 YTEGRTLPINRKQKVF--------PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLE 68
E + K + TL I + +D + C A G ++ T
Sbjct: 247 KRENSQTKLQEKYNSWHHGDFNYERQATLTISSARV-NDSGVFMCYANNTFGSANV-TTT 304
Query: 69 VQVMGINEKPFSGLLPKINKETS 91
++V +K F + P IN
Sbjct: 305 LEV---VDKGFINIFPMINTTVF 324
Score = 42.3 bits (99), Expect = 4e-06
Identities = 7/64 (10%), Positives = 19/64 (29%), Gaps = 10/64 (15%)
Query: 17 YTEGRTLPINRKQ--------KVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTL 67
RT + + L + ++ ++ TYT + + ++ +
Sbjct: 349 IYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKG-TEGGTYTFLVSNSDVNAAIAFNV 407
Query: 68 EVQV 71
V
Sbjct: 408 YVNT 411
Score = 35.4 bits (81), Expect = 0.001
Identities = 10/50 (20%), Positives = 15/50 (30%), Gaps = 3/50 (6%)
Query: 22 TLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
T I + I E ++ YTC K S + V+
Sbjct: 67 TFEILDETNENKQNEWITEKA-EATNTGKYTCTNKHGLSNSI--YVFVRD 113
Score = 33.9 bits (77), Expect = 0.004
Identities = 8/50 (16%), Positives = 14/50 (28%), Gaps = 4/50 (8%)
Query: 26 NRKQKVFPNGTLIIE---NVERQSDQATYTCVAKTAQGYSSR-GTLEVQV 71
P G L+++ + T C A G +S +
Sbjct: 461 TLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKG 510
>2va4_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; transmembrane,
phosphorylation, immunoglobulin domain, membrane,
glycoprotein; HET: NAG; 1.9A {Homo sapiens} PDB:
2xy1_A*
Length = 192
Score = 47.9 bits (114), Expect = 3e-08
Identities = 15/57 (26%), Positives = 23/57 (40%), Gaps = 3/57 (5%)
Query: 17 YTEGRTLPINRKQKVFP-NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+ G+ + N K + N L + N+ SD Y C A G + L+V V
Sbjct: 39 FRNGKLIEENEKYILKGSNTELTVRNI-INSDGGPYVCRATNKAGEDEKQAFLQVFV 94
Score = 39.0 bits (91), Expect = 4e-05
Identities = 14/57 (24%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 17 YTEGRTLPINRKQ--KVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+TEG R + + +L I++V + SD Y C A + G L+++
Sbjct: 137 FTEGDKSLDGRIEVKGQHGSSSLHIKDV-KLSDSGRYDCEAASRIGGHQKSMYLDIE 192
>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell
adhesion, transmembrane, disulfide bond, alternative
splicing; HET: NAG; 1.95A {Rattus norvegicus}
Length = 190
Score = 47.5 bits (113), Expect = 3e-08
Identities = 14/53 (26%), Positives = 17/53 (32%), Gaps = 3/53 (5%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
G L RK N I R D Y CV + T+EV+
Sbjct: 42 NGVELTATRK--NASNMEYRINKP-RAEDSGEYHCVYHFVSAPKANATIEVKA 91
Score = 40.6 bits (95), Expect = 1e-05
Identities = 12/39 (30%), Positives = 16/39 (41%), Gaps = 1/39 (2%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
L I N++ D Y C A + G S L V+V
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV 190
>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane,
glycoprotein, signal, complex (immunoglobulin/receptor);
2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB:
1ira_Y* 4dep_B* 1g0y_R
Length = 315
Score = 48.2 bits (114), Expect = 3e-08
Identities = 13/66 (19%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 17 YTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG---YSSRGTLEVQVMG 73
Y + + L ++ LI+ NV + YTC A Y +E +
Sbjct: 144 YKDCKPLLLDNIHFSGVKDRLIVMNVAE-KHRGNYTCHASYTYLGKQYPITRVIEFITLE 202
Query: 74 INEKPF 79
N+
Sbjct: 203 ENKPTR 208
Score = 40.5 bits (94), Expect = 2e-05
Identities = 9/58 (15%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 17 YTEGRTLPINRKQKV---FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
Y + P++ +Q L + D Y CV + + R + +
Sbjct: 41 YKDDSKTPVSTEQASRIHQHKEKLWFVPA-KVEDSGHYYCVVRNSSY-CLRIKISAKF 96
Score = 33.5 bits (76), Expect = 0.004
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 1/39 (2%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQV 71
L I +E + + +TC AK G + L V
Sbjct: 276 ITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYPV 314
>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL
structural protein; 3.30A {Oryctolagus cuniculus}
Length = 570
Score = 47.9 bits (114), Expect = 5e-08
Identities = 16/59 (27%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 17 YTEGRTLPIN---RKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
Y + + + R V L + N+ D YTC A A G SS +L+V+
Sbjct: 326 YKDETEIQESSKFRMSFVESVAVLEMYNLSV-EDSGDYTCEAHNAAGSASSSTSLKVKE 383
Score = 46.0 bits (109), Expect = 2e-07
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 19 EGRTLPINRKQKV---FPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+ R + K+ TL + V + D YTC A G S L VQ
Sbjct: 234 DNREIRPGGNYKMTLVENTATLTVLKV-TKGDAGQYTCYASNVAGKDSCSAQLGVQE 289
Score = 44.0 bits (104), Expect = 1e-06
Identities = 13/59 (22%), Positives = 26/59 (44%), Gaps = 5/59 (8%)
Query: 17 YTEGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+ + R L +K K+ ++ I NV+ +D Y C A G + G++ ++
Sbjct: 419 HKDKRELRSGKKYKIMSENFLTSIHILNVDS-ADIGEYQCKASNDVGSDTCVGSITLKA 476
Score = 42.5 bits (100), Expect = 4e-06
Identities = 11/38 (28%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQ 70
TL E ++ YTC K G TL V
Sbjct: 533 IATLQFSRAEP-ANAGKYTCQIKNEAGTQECFATLSVL 569
Score = 40.9 bits (96), Expect = 1e-05
Identities = 14/66 (21%), Positives = 23/66 (34%), Gaps = 5/66 (7%)
Query: 17 YTEGRTLPINRKQKVF---PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73
Y +G L + + TL I QS Y C A G ++ + ++ +
Sbjct: 136 YKDGELLKDDANLQTSFIHNVATLQILQT-DQSHVGQYNCSASNPLG-TASSSAKLTLSE 193
Query: 74 INEKPF 79
PF
Sbjct: 194 HEVPPF 199
Score = 40.6 bits (95), Expect = 2e-05
Identities = 16/62 (25%), Positives = 25/62 (40%), Gaps = 5/62 (8%)
Query: 17 YTEGRTLPINRKQKVF---PNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQVM 72
Y E L K+ +L+I V SD YTC A+ + G +S L ++
Sbjct: 40 YKEHTKLRSAPAYKMQFKNNVASLVINKV-DHSDVGEYTCKAENSVGAVASSAVLVIKER 98
Query: 73 GI 74
+
Sbjct: 99 KL 100
>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG
B3P; 2.60A {Homo sapiens}
Length = 304
Score = 47.5 bits (113), Expect = 5e-08
Identities = 19/48 (39%), Positives = 26/48 (54%), Gaps = 3/48 (6%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
N + K +G L IE+ ++DQ Y CVA + G YSS L V+V
Sbjct: 155 NGRIKQLRSGALQIESS-EETDQGKYECVATNSAGVRYSSPANLYVRV 201
Score = 46.0 bits (109), Expect = 2e-07
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 19 EGRTLPINRKQKVF----PNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+G+ + R + + L I+ + D+ Y CVA+ + G + L V
Sbjct: 43 KGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLR 100
Score = 41.7 bits (98), Expect = 6e-06
Identities = 13/54 (24%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
L P G ++E D A YTCVA ++ G + + V+
Sbjct: 242 GAEDLTPEDD---MPVGRNVLELT-DVKDSANYTCVAMSSLGVIEAVAQITVKS 291
>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker,
immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A
Length = 642
Score = 47.3 bits (112), Expect = 7e-08
Identities = 15/56 (26%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
Query: 17 YTEGRTLPIN-RKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
+ G++LP++ R Q N TL + NV R +D Y C + + + + + V
Sbjct: 501 WVNGQSLPVSPRLQLSNGNRTLTLFNVTR-NDARAYVCGIQNSVSANRSDPVTLDV 555
Score = 45.3 bits (107), Expect = 3e-07
Identities = 10/57 (17%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Query: 17 YTEGRTLPINRKQKVFP-NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
+ ++LP++ + ++ N TL + +V ++D Y C + + + V+
Sbjct: 323 WVNNQSLPVSPRLQLSNDNRTLTLLSV-TRNDVGPYECGIQNELSVDHSDPVILNVL 378
Score = 44.9 bits (106), Expect = 5e-07
Identities = 15/72 (20%), Positives = 29/72 (40%), Gaps = 1/72 (1%)
Query: 8 LIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTL 67
I Y + ++ ++PN +L+I+N+ Q+D YT + + T
Sbjct: 44 QIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNI-IQNDTGFYTLHVIKSDLVNEEATG 102
Query: 68 EVQVMGINEKPF 79
+ +V KP
Sbjct: 103 QFRVYPELPKPS 114
Score = 39.9 bits (93), Expect = 2e-05
Identities = 6/39 (15%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQV 71
L I + ++ TY C + + V
Sbjct: 603 TQVLFIAKITP-NNNGTYACFVSNLATGRNNSIVKSITV 640
Score = 39.6 bits (92), Expect = 4e-05
Identities = 16/63 (25%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 17 YTEGRTLPIN-RKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75
+ ++LP++ R Q N TL + NV R +D A+Y C + ++ + V+
Sbjct: 145 WVNNQSLPVSPRLQLSNGNRTLTLFNVTR-NDTASYKCETQNPVSARRSDSVILNVLYGP 203
Query: 76 EKP 78
+ P
Sbjct: 204 DAP 206
Score = 38.8 bits (90), Expect = 6e-05
Identities = 12/52 (23%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 29 QKVFPNGTLIIENVERQSDQATYTCVAK-TAQGYSSRGTLEVQVMGINEKPF 79
L I N+ ++ +YTC A + G + + V KPF
Sbjct: 242 TFQQSTQELFIPNI-TVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPF 292
Score = 38.0 bits (88), Expect = 1e-04
Identities = 10/40 (25%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 33 PNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQV 71
L I N+ + YTC A + SR + V
Sbjct: 424 HTQELFISNITE-KNSGLYTCQANNSASGHSRTTVKTITV 462
>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain,
vegfr-2, growth factor receptor, VEGF LI
hormone-signaling protein complex, angiogenesis; 3.20A
{Homo sapiens} PDB: 3v6b_R
Length = 772
Score = 47.1 bits (111), Expect = 8e-08
Identities = 11/61 (18%), Positives = 18/61 (29%), Gaps = 5/61 (8%)
Query: 24 PINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQVMG---INEKPF 79
P+ + L I V + D YT + + + + V I EK
Sbjct: 370 PLESNHTIKAGHVLTIMEV-SERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSL 428
Query: 80 S 80
Sbjct: 429 I 429
Score = 42.1 bits (98), Expect = 5e-06
Identities = 15/63 (23%), Positives = 24/63 (38%), Gaps = 3/63 (4%)
Query: 17 YTEGRTLPINRKQKV-FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75
+ + TL + + N L I V + D+ YTC A + G + + G
Sbjct: 701 FKDNETLVEDSGIVLKDGNRNLTIRRVRK-EDEGLYTCQACSVLGCAKV-EAFFIIEGAQ 758
Query: 76 EKP 78
EK
Sbjct: 759 EKT 761
Score = 41.3 bits (96), Expect = 1e-05
Identities = 13/56 (23%), Positives = 17/56 (30%), Gaps = 2/56 (3%)
Query: 17 YTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEVQV 71
Y E R +P + I + S C AK Y S + V V
Sbjct: 165 YPEKRFVPDGNRISWDSKKGFTIPSY-MISYAGMVFCEAKINDESYQSIMYIVVVV 219
Score = 37.4 bits (86), Expect = 2e-04
Identities = 17/61 (27%), Positives = 27/61 (44%), Gaps = 5/61 (8%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGLLPKINKETSPS 93
TL I+ V +SDQ YTC A + + + + V+V +EKPF + +
Sbjct: 289 LSTLTIDGV-TRSDQGLYTCAASSGLM-TKKNSTFVRV---HEKPFVAFGSGMESLVEAT 343
Query: 94 A 94
Sbjct: 344 V 344
Score = 34.7 bits (79), Expect = 0.002
Identities = 13/84 (15%), Positives = 22/84 (26%), Gaps = 9/84 (10%)
Query: 15 SFYTEGRTLPINRKQKVFPNG----TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70
+ + +G TL I V +D Y C + S + VQ
Sbjct: 62 LWPNNQSGSEQRVEVTECSDGLFCKTLTIPKV-IGNDTGAYKCFYRETDLASVI-YVYVQ 119
Query: 71 VMGINEKPFSGLLPKINKETSPSA 94
PF + + +
Sbjct: 120 D---YRSPFIASVSDQHGVVYITE 140
Score = 32.4 bits (73), Expect = 0.011
Identities = 7/39 (17%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+ ++N DQ Y C+A+ + ++ V
Sbjct: 624 ILIMELKNASL-QDQGDYVCLAQDRKTKKRHCVVRQLTV 661
Score = 29.7 bits (66), Expect = 0.097
Identities = 9/40 (22%), Positives = 14/40 (35%), Gaps = 1/40 (2%)
Query: 33 PNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQV 71
N T+ ++ + A Y C A G R + V
Sbjct: 510 KNKTVSTLVIQAANVSALYKCEAVNKVGRGERVISFHVTR 549
>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A
{Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
b.1.1.4
Length = 395
Score = 46.8 bits (111), Expect = 1e-07
Identities = 15/76 (19%), Positives = 27/76 (35%), Gaps = 2/76 (2%)
Query: 20 GRTLPINRKQKVFPNGTLIIENVERQ--SDQATYTCVAKTAQGYSSRGTLEVQVMGINEK 77
+R+ P+G L V ++ SD Y C AK A +E ++ G+ +
Sbjct: 146 ADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKD 205
Query: 78 PFSGLLPKINKETSPS 93
+ + S
Sbjct: 206 NSGYKGEPVPQYVSKD 221
Score = 44.5 bits (105), Expect = 7e-07
Identities = 11/54 (20%), Positives = 19/54 (35%), Gaps = 4/54 (7%)
Query: 17 YTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEV 69
+ L R + L+I+ V+ D+ Y C A G ++V
Sbjct: 344 SHNAKPLSGGRAT--VTDSGLVIKGVKN-GDKGYYGCRATNEHGDKYFETLVQV 394
Score = 43.0 bits (101), Expect = 2e-06
Identities = 12/62 (19%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 19 EGRTLPINRKQKVF--PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINE 76
+G++ G+L+ + SD+ Y C A+T G +S + + +
Sbjct: 44 DGKSYNWQEHNAALRKDEGSLVFLRP-QASDEGHYQCFAETPAGVASSRVISFRKTYLIA 102
Query: 77 KP 78
P
Sbjct: 103 SP 104
Score = 41.4 bits (97), Expect = 7e-06
Identities = 10/59 (16%), Positives = 23/59 (38%), Gaps = 6/59 (10%)
Query: 19 EGRTLPINRKQKV-----FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
G+ + N + ++ L+ + D+ YTC G + +L++ V+
Sbjct: 249 NGKDVNGNPEDRITRHNRTSGKRLLFKTT-LPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306
>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion
comple adhesion; HET: NAG; 2.30A {Homo sapiens}
Length = 201
Score = 46.4 bits (110), Expect = 1e-07
Identities = 11/53 (20%), Positives = 20/53 (37%), Gaps = 3/53 (5%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+P + L I N+ + D+ Y C A+ +G + + VQ
Sbjct: 150 VLEPMPSTAEISTS-GAVLKIFNI-QLEDEGIYECEAENIRGKDKHQARIYVQ 200
Score = 42.2 bits (99), Expect = 3e-06
Identities = 16/66 (24%), Positives = 26/66 (39%), Gaps = 1/66 (1%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGLLPK 85
R+ NG L I NVE SD+ Y+C + S + + ++ I E+
Sbjct: 57 KRRFVSQTNGNLYIANVEA-SDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPAD 115
Query: 86 INKETS 91
I +
Sbjct: 116 IVVQFK 121
>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta
trefoil, IG domain, growth factor/growth factor receptor
complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 334
Score = 46.5 bits (110), Expect = 1e-07
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 24 PINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQVMGINEKPFSGL 82
I + +L++E+V SD+ YTCV + G TL+V +
Sbjct: 169 RIGGIKLRHQQWSLVMESV-VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAG 227
Query: 83 LPK 85
LP
Sbjct: 228 LPA 230
Score = 43.1 bits (101), Expect = 2e-06
Identities = 12/75 (16%), Positives = 21/75 (28%), Gaps = 2/75 (2%)
Query: 20 GRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPF 79
G L + + V L + N D Y+C + Q ++ V +
Sbjct: 47 GTGLVPSERVLV-GPQRLQVLNA-SHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDE 104
Query: 80 SGLLPKINKETSPSA 94
G + A
Sbjct: 105 DGEDEAEDTGVDTGA 119
Score = 41.1 bits (96), Expect = 8e-06
Identities = 12/46 (26%), Positives = 16/46 (34%), Gaps = 2/46 (4%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQ 70
L + NV D YTC+A + G+S L V
Sbjct: 282 GANTTDKELEVLSLHNV-TFEDAGEYTCLAGNSIGFSHHSAWLVVL 326
>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, membrane, glycoprote adhesion,
transmembrane; HET: NAG; 2.00A {Homo sapiens}
Length = 189
Score = 45.9 bits (109), Expect = 1e-07
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 19 EGRTLPINRKQKVFP-NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
G+ + N K + N L + N+ SD Y C A G + L+V V
Sbjct: 135 NGKLIEENEKYILKGSNTELTVRNIIN-SDGGPYVCRATNKAGEDEKQAFLQVFV 188
Score = 43.6 bits (103), Expect = 9e-07
Identities = 12/56 (21%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 19 EGRTLPINRKQK--VFPNGTLIIENVERQSDQATYTCVAK-TAQGYSSRGTLEVQV 71
+ + + N L I N+ +SD+ Y C + A+G + V V
Sbjct: 39 HNEEVTTISDNRFAMLANNNLQILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIV 93
>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus
gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB:
2om5_A
Length = 382
Score = 46.4 bits (110), Expect = 1e-07
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+G+ L + +V G L + D Y CVA+ G + L VQ
Sbjct: 331 DGQPLASQNRIEV-SGGELRFSKLVL-EDSGMYQCVAENKHGTVYASAELTVQ 381
Score = 42.5 bits (100), Expect = 3e-06
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 3/58 (5%)
Query: 19 EGRTLPINRKQKV-FPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMG 73
G L + + G L+I N + D +Y CVA A+G S +L +
Sbjct: 44 NGTELKMGPDSRYRLVAGDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQ 101
Score = 42.2 bits (99), Expect = 4e-06
Identities = 12/62 (19%), Positives = 21/62 (33%), Gaps = 2/62 (3%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQVMGINEKPFSGLLP 84
R+ G L I E SD Y+C A + + + + + + + P
Sbjct: 149 GRRFVSQTTGNLYIAKTE-ASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAP 207
Query: 85 KI 86
I
Sbjct: 208 SI 209
Score = 41.8 bits (98), Expect = 6e-06
Identities = 11/54 (20%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+ L I+NV D+ TY C A+ +G + +G + +
Sbjct: 244 LDGSQTSKWLS---SEPLLHIQNV-DFEDEGTYECEAENIKGRDTYQGRIIIHA 293
>2v44_A NCAM2, neural cell adhesion molecule 2; phosphorylation,
immunoglobulin domain, IG, membrane, homphilic,
glycoprotein, transmembrane; 1.77A {Homo sapiens} PDB:
2xy2_A* 2vaj_A
Length = 189
Score = 45.5 bits (108), Expect = 2e-07
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 19 EGRTLPI--NRKQKVFPNGTLIIENVERQSDQATYTCVAK-TAQGYSSRGTLEVQV 71
+ + + + N L I N+ +SD+ Y C + A+G + V V
Sbjct: 133 HNEEVTTISDNRFAMLANNNLQILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIV 187
Score = 41.7 bits (98), Expect = 5e-06
Identities = 14/57 (24%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 20 GRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
G + ++ V G L I N D Y C A A+G + LE+
Sbjct: 40 GEKIISTQRVVVQKEGVRSRLTIYNA-NIEDAGIYRCQATDAKGQTQEATVVLEIYQ 95
>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif,
immunoglobulin-like domain, growth facto factor
receptor, extracellular; 2.10A {Homo sapiens} PDB:
1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E
1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C
Length = 231
Score = 46.0 bits (109), Expect = 2e-07
Identities = 16/62 (25%), Positives = 26/62 (41%), Gaps = 2/62 (3%)
Query: 25 INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQVMGINEKPFSGLL 83
I + + +LI+E+V SD+ YTCV + G + L+V + L
Sbjct: 66 IGGYKVRNQHWSLIMESV-VPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGL 124
Query: 84 PK 85
P
Sbjct: 125 PA 126
Score = 40.7 bits (95), Expect = 1e-05
Identities = 9/40 (22%), Positives = 15/40 (37%), Gaps = 2/40 (5%)
Query: 33 PNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQV 71
L + NV ++D Y C G +++ L V
Sbjct: 183 NAEVLALFNV-TEADAGEYICKVSNYIGQANQSAWLTVLP 221
>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth
factor-receptor complex, receptor tyrosine kinase, CY
4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus
musculus}
Length = 289
Score = 45.7 bits (108), Expect = 2e-07
Identities = 12/59 (20%), Positives = 21/59 (35%), Gaps = 1/59 (1%)
Query: 20 GRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78
GR + P II + D TY C S+ + ++V ++ +P
Sbjct: 129 GRQVLRKTVYFFSPWRGFIIRKA-KVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEP 186
Score = 43.4 bits (102), Expect = 2e-06
Identities = 10/54 (18%), Positives = 15/54 (27%), Gaps = 7/54 (12%)
Query: 27 RKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQVMGINEKPF 79
+ L + V D Y+CVA G + +V E
Sbjct: 237 QDNYYKKVRALSLNAV-DFQDAGIYSCVASNDVGTRTATMNFQVV-----ESHH 284
Score = 38.8 bits (90), Expect = 6e-05
Identities = 11/49 (22%), Positives = 14/49 (28%), Gaps = 2/49 (4%)
Query: 24 PINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
P P TL N + TY C S+ L V+
Sbjct: 40 PYWTLDPESPGSTLTTRNA-TFKNTGTYRCTELEDPMAGSTTIHLYVKD 87
>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein;
1.60A {Oryctolagus cuniculus} PDB: 2rjm_A
Length = 284
Score = 45.1 bits (107), Expect = 4e-07
Identities = 13/56 (23%), Positives = 25/56 (44%), Gaps = 5/56 (8%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+ R L +K K+ ++ I NV+ +D Y C A G + G++ ++
Sbjct: 229 DKRELRSGKKYKIMSENFLTSIHILNVDS-ADIGEYQCKASNDVGSYTCVGSITLK 283
Score = 45.1 bits (107), Expect = 4e-07
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 5/57 (8%)
Query: 19 EGRTLPINRKQKVF---PNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+ R + K+ TL + V + D YTC A G S L VQ
Sbjct: 42 DNREIRPGGNYKMTLVENTATLTVLKV-TKGDAGQYTCYASNVAGKDSCSAQLGVQE 97
Score = 42.8 bits (101), Expect = 2e-06
Identities = 14/57 (24%), Positives = 24/57 (42%), Gaps = 5/57 (8%)
Query: 19 EGRTLPINRKQKVF---PNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+ + + K ++ L + N+ D YTC A A G SS +L+V+
Sbjct: 136 DETEIQESSKFRMSFVESVAVLEMYNL-SVEDSGDYTCEAHNAAGSASSSTSLKVKE 191
>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor
protein tyrosine phosphatase; HET: NAG; 2.00A {Mus
musculus} PDB: 3jxa_A*
Length = 384
Score = 45.2 bits (107), Expect = 4e-07
Identities = 17/64 (26%), Positives = 22/64 (34%), Gaps = 1/64 (1%)
Query: 23 LPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGL 82
NR+ G L I VE +SD YTCV ++ N+
Sbjct: 145 YQDNRRFVSQETGNLYIAKVE-KSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEY 203
Query: 83 LPKI 86
PKI
Sbjct: 204 EPKI 207
Score = 44.8 bits (106), Expect = 5e-07
Identities = 14/54 (25%), Positives = 24/54 (44%), Gaps = 2/54 (3%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+ ++ NG L I N +Q D +Y CVA+ ++G ++G L
Sbjct: 242 ADGKPIARKARRHKSNGILEIPNF-QQEDAGSYECVAENSRGKNVAKGQLTFYA 294
Score = 44.1 bits (104), Expect = 8e-07
Identities = 14/60 (23%), Positives = 24/60 (40%), Gaps = 3/60 (5%)
Query: 17 YTEGRTLPINRKQKV-FPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMG 73
G + I + +G+L+I N + D TY C+A + G S L+ +
Sbjct: 43 KLNGTDVDIGMDFRYSVVDGSLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLE 102
Score = 43.7 bits (103), Expect = 1e-06
Identities = 17/53 (32%), Positives = 21/53 (39%), Gaps = 3/53 (5%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
G L + ++ GTL I V SD Y CVA+ G S L V
Sbjct: 332 NGDPLLTRDRIQI-EQGTLNITIVNL-SDAGMYQCVAENKHGVIFSSAELSVI 382
>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane,
transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo
sapiens}
Length = 291
Score = 45.2 bits (107), Expect = 4e-07
Identities = 15/55 (27%), Positives = 22/55 (40%), Gaps = 3/55 (5%)
Query: 19 EGRTLPINRKQKVFP-NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
G+ + N K + N L + N+ SD Y C A G + L+V V
Sbjct: 231 NGKLIEENEKYILKGSNTELTVRNIIN-SDGGPYVCRATNKAGEDEKQAFLQVFV 284
Score = 43.7 bits (103), Expect = 1e-06
Identities = 14/61 (22%), Positives = 22/61 (36%), Gaps = 6/61 (9%)
Query: 16 FYTEGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQ 70
+ +G + ++ V G L I N D Y C A A+G + LE+
Sbjct: 38 YNPQGEKIISTQRVVVQKEGVRSRLTIYNA-NIEDAGIYRCQATDAKGQTQEATVVLEIY 96
Query: 71 V 71
Sbjct: 97 Q 97
Score = 41.3 bits (97), Expect = 7e-06
Identities = 12/56 (21%), Positives = 22/56 (39%), Gaps = 4/56 (7%)
Query: 19 EGRTLPI--NRKQKVFPNGTLIIENVERQSDQATYTCVAK-TAQGYSSRGTLEVQV 71
+ + + + N L I N+ +SD+ Y C + A+G + V V
Sbjct: 135 HNEEVTTISDNRFAMLANNNLQILNI-NKSDEGIYRCEGRVEARGEIDFRDIIVIV 189
>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural
genomics, NPPSFA, national project on protein
structural and functional analyses; NMR {Homo sapiens}
Length = 99
Score = 42.7 bits (101), Expect = 6e-07
Identities = 14/53 (26%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
G+ + R L I++ D TYTC+A+ A G S + V
Sbjct: 48 NGQPIQYARSTCEAGVAELHIQDA-LPEDHGTYTCLAENALGQVSCSAWVTVH 99
>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein
complex, receptor tyrosine kinas binding, immunoglobulin
domain, kinase, membrane, nucleotid binding; HET: NAG;
2.10A {Homo sapiens}
Length = 241
Score = 44.2 bits (104), Expect = 6e-07
Identities = 16/63 (25%), Positives = 25/63 (39%), Gaps = 2/63 (3%)
Query: 24 PINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQVMGINEKPFSGL 82
I + +L++E+V SD+ YTCV + G TL+V +
Sbjct: 61 RIGGIKLRHQQWSLVMESV-VPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAG 119
Query: 83 LPK 85
LP
Sbjct: 120 LPA 122
Score = 41.5 bits (97), Expect = 6e-06
Identities = 12/52 (23%), Positives = 18/52 (34%), Gaps = 2/52 (3%)
Query: 21 RTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQV 71
L + V + L + NV + D Y C A G + + L V
Sbjct: 168 TVLKSWISESVEADVRLRLANV-SERDGGEYLCRATNFIGVAEKAFWLSVHG 218
>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling
protein/receptor, growth regulation/complex, vitamin
K-dependent protein; HET: NAG; 3.3A {Homo sapiens}
Length = 195
Score = 44.1 bits (104), Expect = 7e-07
Identities = 9/48 (18%), Positives = 21/48 (43%), Gaps = 3/48 (6%)
Query: 24 PINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
P+ P +L + + ++++C A A+G ++ T + V
Sbjct: 147 PLATAPGHGPQRSLHVPGLN---KTSSFSCEAHNAKGVTTSRTATITV 191
Score = 41.0 bits (96), Expect = 8e-06
Identities = 8/49 (16%), Positives = 18/49 (36%), Gaps = 3/49 (6%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVM 72
+ + L I +++ SD Y C+ S G + ++ +
Sbjct: 59 DEQDDWIVVSQLRITSLQL-SDTGQYQCLVFLGHQTFVSQPGYVGLEGL 106
>2ens_A Advanced glycosylation END product-specific receptor;
beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 96
Score = 42.4 bits (100), Expect = 7e-07
Identities = 14/55 (25%), Positives = 26/55 (47%), Gaps = 8/55 (14%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAK-TAQGYSSRGTLEVQVM 72
+G LP+ P+ LI+ + DQ TY+CVA ++ G + + ++
Sbjct: 47 DGVPLPLP------PSPVLILPEI-GPQDQGTYSCVATHSSHGPQESRAVSISII 94
>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A*
1qa9_A
Length = 182
Score = 43.7 bits (103), Expect = 8e-07
Identities = 16/64 (25%), Positives = 26/64 (40%), Gaps = 2/64 (3%)
Query: 16 FYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEVQVMGI 74
F E T K+F NGTL I+++ + DQ Y +G ++++
Sbjct: 47 FRKEKETFKEKDTYKLFKNGTLKIKHL-KTDDQDIYKVSIYDTKGKNVLEKIFDLKIQER 105
Query: 75 NEKP 78
KP
Sbjct: 106 VSKP 109
Score = 24.8 bits (54), Expect = 4.0
Identities = 5/28 (17%), Positives = 10/28 (35%), Gaps = 1/28 (3%)
Query: 29 QKVFPNGTLIIENVERQSDQATYTCVAK 56
+ + + +I S A + C A
Sbjct: 139 KHLKLSQRVITHKWTT-SLSAKFKCTAG 165
>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM;
2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4
PDB: 1ie5_A
Length = 291
Score = 44.1 bits (104), Expect = 8e-07
Identities = 15/61 (24%), Positives = 21/61 (34%), Gaps = 4/61 (6%)
Query: 25 INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGLLP 84
I+ + TL I N D Y CV G S T+ V++ +K P
Sbjct: 52 ISVVWNDDDSSTLTIYNA-NIDDAGIYKCVVTAEDGTQSEATVNVKI---FQKLMFKNAP 107
Query: 85 K 85
Sbjct: 108 T 108
Score = 40.6 bits (95), Expect = 2e-05
Identities = 12/58 (20%), Positives = 24/58 (41%), Gaps = 6/58 (10%)
Query: 19 EGRTLPI--NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY---SSRGTLEVQV 71
+GR + + + + V N L I +++ +D+ TY C + + V V
Sbjct: 137 KGRDVILKKDVRFIVLSNNYLQIRGIKK-TDEGTYRCEGRILARGEINFKDIQVIVNV 193
Score = 40.2 bits (94), Expect = 2e-05
Identities = 12/46 (26%), Positives = 22/46 (47%), Gaps = 2/46 (4%)
Query: 27 RKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+ + L I NV+ ++D+A Y C+A+ G + L+V
Sbjct: 246 KHIFSDDSSELTIRNVD-KNDEAEYVCIAENKAGEQDASIHLKVFA 290
>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus}
SCOP: b.1.1.1 b.1.1.3
Length = 176
Score = 43.4 bits (102), Expect = 9e-07
Identities = 14/65 (21%), Positives = 28/65 (43%), Gaps = 2/65 (3%)
Query: 15 SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYS-SRGTLEVQVMG 73
F + + + ++ NG L I+N+ R D TY + G L+++++
Sbjct: 41 EFKRKMKPFLKSGAFEILANGDLKIKNLTRD-DSGTYNVTVYSTNGTRILNKALDLRILE 99
Query: 74 INEKP 78
+ KP
Sbjct: 100 MVSKP 104
>1f97_A Junction adhesion molecule; immunoglobulin superfamily,
beta-sandwich fold, cell adhesion; 2.50A {Mus musculus}
SCOP: b.1.1.1 b.1.1.4
Length = 212
Score = 43.8 bits (103), Expect = 9e-07
Identities = 9/60 (15%), Positives = 19/60 (31%), Gaps = 2/60 (3%)
Query: 14 QSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQVM 72
+ + F + + +V R D YTC+ G ++ + V+
Sbjct: 44 ALVCYNSQITAPYADRVTFSSSGITFSSVTR-KDNGEYTCMVSEEGGQNYGEVSIHLTVL 102
Score = 38.0 bits (88), Expect = 1e-04
Identities = 10/39 (25%), Positives = 15/39 (38%), Gaps = 2/39 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQV 71
+G LI + V D Y C A+ G + R +
Sbjct: 168 SGDLIFDPVTA-FDSGEYYCQAQNGYGTAMRSEAAHMDA 205
>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB:
2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A
Length = 212
Score = 43.7 bits (103), Expect = 1e-06
Identities = 16/41 (39%), Positives = 20/41 (48%), Gaps = 3/41 (7%)
Query: 33 PNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
G L IE +SDQ Y CVA + G YS+ L V+
Sbjct: 165 SIGALQIEQS-EESDQGKYECVATNSAGTRYSAPANLYVRG 204
Score = 41.3 bits (97), Expect = 6e-06
Identities = 16/64 (25%), Positives = 31/64 (48%), Gaps = 5/64 (7%)
Query: 19 EGRTLPINRKQKV-FPNGT---LIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGI 74
+G+ + R + + F +G+ L I+ + D+A Y CVA G S + + V+
Sbjct: 43 KGKKVSNQRFEVIEFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISV-STRLTVLRE 101
Query: 75 NEKP 78
++ P
Sbjct: 102 DQIP 105
>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex,
beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo
sapiens}
Length = 339
Score = 43.9 bits (103), Expect = 1e-06
Identities = 15/75 (20%), Positives = 28/75 (37%), Gaps = 10/75 (13%)
Query: 17 YTEGRTLPI--NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG---YSSRGTLEVQV 71
Y + L + V L++ +V D Y CV A Y+ ++E+++
Sbjct: 160 YKDSLLLDKDNEKFLSVRGTTHLLVHDVAL-EDAGYYRCVLTFAHEGQQYNITRSIELRI 218
Query: 72 MGINEKPFSGLLPKI 86
+K +P I
Sbjct: 219 ----KKKKEETIPVI 229
Score = 40.1 bits (93), Expect = 2e-05
Identities = 10/59 (16%), Positives = 18/59 (30%), Gaps = 5/59 (8%)
Query: 17 YTEGRTLPINRKQK---VFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQV 71
+ + +++ +G L + Q D TY C + A L V
Sbjct: 60 HKNDSARTVPGEEETRMWAQDGALWLLPA-LQEDSGTYVCTTRNASYCDKMSIELRVFE 117
Score = 35.0 bits (80), Expect = 0.001
Identities = 11/61 (18%), Positives = 21/61 (34%), Gaps = 1/61 (1%)
Query: 11 SYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70
+Y TEG + + + LI + V R+ + CV + + V+
Sbjct: 274 AYPGGRVTEGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTL-RTTVK 332
Query: 71 V 71
Sbjct: 333 E 333
>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2,
angiogenesis, ATP-binding, developmental protein,
differentiation, glycoprotein; 2.70A {Homo sapiens}
Length = 108
Score = 41.6 bits (98), Expect = 2e-06
Identities = 13/55 (23%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 19 EGRTLPINRKQKVFP-NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+ TL + + N L I V R+ D+ YTC A + G ++
Sbjct: 47 DNETLVEDSGIVLKDGNRNLTIRRV-RKEDEGLYTCQACSVLGCAKVEAFFIIEG 100
>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion,
membrane, development protein; HET: NAG; 1.95A
{Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*
Length = 388
Score = 43.0 bits (101), Expect = 2e-06
Identities = 15/91 (16%), Positives = 26/91 (28%)
Query: 2 PPLLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY 61
+ ++ + + K V P+G L I V + +Y C K
Sbjct: 131 VADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTG 190
Query: 62 SSRGTLEVQVMGINEKPFSGLLPKINKETSP 92
+R + + I E S P
Sbjct: 191 ETRLSATKGRLVITEPISSSAPRTPALVQKP 221
Score = 41.8 bits (98), Expect = 6e-06
Identities = 16/55 (29%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Query: 18 TEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
T + + +N + K +GTLII++ D Y CV + G S L V
Sbjct: 254 TRKQAVVLNDRVKQV-SGTLIIKDA-VVEDSGKYLCVVNNSVGGESVETVLTVTA 306
Score = 38.0 bits (88), Expect = 1e-04
Identities = 8/38 (21%), Positives = 17/38 (44%), Gaps = 2/38 (5%)
Query: 33 PNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEV 69
L IE+V++ D+ Y C + + + L++
Sbjct: 351 SESVLRIESVKK-EDKGMYQCFVRNDRESAEASAELKL 387
Score = 36.8 bits (85), Expect = 3e-04
Identities = 8/56 (14%), Positives = 19/56 (33%), Gaps = 7/56 (12%)
Query: 24 PINRKQKVFPNGTLIIENVE-----RQSDQATYTCVAKTAQG--YSSRGTLEVQVM 72
+ +++ +G L+ ++ Y C+A+ G S + V
Sbjct: 48 DVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVA 103
>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, CY receptor complex, extracellular
complex; HET: NAG; 4.30A {Homo sapiens}
Length = 423
Score = 43.1 bits (101), Expect = 2e-06
Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 17 YTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQV 71
++ P +K ++ + Y A+ ++ TL ++
Sbjct: 361 TFSRKSFPCEQKGLDN-GYSISKFCN-HKHQPGEYIFHAENDDAQFTKMFTLNIRS 414
Score = 38.9 bits (90), Expect = 6e-05
Identities = 4/57 (7%), Positives = 17/57 (29%), Gaps = 4/57 (7%)
Query: 17 YTEGRTLPINRKQKVF--PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
+ +L + +++I + ++ Y ++ + V +
Sbjct: 83 VFKHSSLNCQPHFDLQNRGVVSMVILKM-TETQAGEYLLFIQSEAT-NYTILFTVSI 137
Score = 35.8 bits (82), Expect = 7e-04
Identities = 9/55 (16%), Positives = 18/55 (32%), Gaps = 8/55 (14%)
Query: 31 VFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGLLPK 85
+ + +V ++D YTC + S+ + + EK F
Sbjct: 286 MIRILFAFVSSV-ARNDTGYYTCSSSKHPSQSA--LVTIV-----EKGFINATNS 332
Score = 31.6 bits (71), Expect = 0.024
Identities = 4/46 (8%), Positives = 10/46 (21%), Gaps = 4/46 (8%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
V ++ + C A+ G + +
Sbjct: 185 EESPAVVKKEEKVL----HELFGTDIRCCARNELGRECTRLFTIDL 226
Score = 24.2 bits (52), Expect = 9.3
Identities = 6/40 (15%), Positives = 14/40 (35%), Gaps = 2/40 (5%)
Query: 41 NVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFS 80
N ++Y V+++ + L Q G + +
Sbjct: 20 NDSSVGKSSSYPMVSESPEDLGCA--LRPQSSGTVYEAAA 57
>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain,
immunoglobulin superfamily, transmembrane,
phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A
{Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A
Length = 389
Score = 42.9 bits (101), Expect = 2e-06
Identities = 14/58 (24%), Positives = 25/58 (43%), Gaps = 4/58 (6%)
Query: 17 YTEGRTLPINRKQ--KVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+TEG R + + +L I++V+ SD Y C A + G L+++
Sbjct: 43 FTEGDKSLDGRIEVKGQHGSSSLHIKDVKL-SDSGRYDCEAASRIGGHQKSMYLDIEY 99
Score = 37.1 bits (86), Expect = 2e-04
Identities = 10/58 (17%), Positives = 14/58 (24%), Gaps = 7/58 (12%)
Query: 19 EGRTLPINRKQKVF-----PNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+ LP + L I +D Y C A G L +
Sbjct: 137 DKLVLPAKNTTNLKTYSTGRKMILEIAPTSD-NDFGRYNCTATNHIGTRFQEYILALA 193
>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1,
BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 99
Score = 41.2 bits (97), Expect = 2e-06
Identities = 12/64 (18%), Positives = 25/64 (39%), Gaps = 4/64 (6%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM-GINEK 77
+G L + + ++ + +++ +D Y CV + G + V V +
Sbjct: 39 DGVQLAESNRTRI-TGEEVEVQDSVP-ADSGLYACVTSSPSGSDTT-YFSVNVSDALPSG 95
Query: 78 PFSG 81
P SG
Sbjct: 96 PSSG 99
>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical
bundle cytokine, hematopoietic cytokine-receptor
complex, cell surface, EXTR complex; 7.80A {Homo
sapiens}
Length = 527
Score = 42.8 bits (100), Expect = 3e-06
Identities = 6/56 (10%), Positives = 17/56 (30%), Gaps = 3/56 (5%)
Query: 17 YTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQV 71
++ P +K ++ + Y A+ ++ TL ++
Sbjct: 361 TFSRKSFPCEQKGLDN-GYSISKFCNHK-HQPGEYIFHAENDDAQFTKMFTLNIRR 414
Score = 40.8 bits (95), Expect = 1e-05
Identities = 9/54 (16%), Positives = 20/54 (37%), Gaps = 8/54 (14%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPF 79
+ + + + +V ++D YTC + S+ + + EK F
Sbjct: 281 STNRTMIRILFAFVSSV-ARNDTGYYTCSSSKHPSQSA--LVTIV-----EKGF 326
Score = 36.6 bits (84), Expect = 4e-04
Identities = 5/57 (8%), Positives = 18/57 (31%), Gaps = 4/57 (7%)
Query: 17 YTEGRTLPINRKQKVFPNG--TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
+ +L + G +++I + ++ Y ++ + V +
Sbjct: 83 VFKHSSLNCQPHFDLQNRGVVSMVILKM-TETQAGEYLLFIQSEAT-NYTILFTVSI 137
Score = 30.8 bits (69), Expect = 0.040
Identities = 6/50 (12%), Positives = 12/50 (24%)
Query: 24 PINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73
++ P E V + C A+ G + +
Sbjct: 179 QGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQ 228
Score = 27.4 bits (60), Expect = 0.77
Identities = 9/52 (17%), Positives = 13/52 (25%), Gaps = 2/52 (3%)
Query: 21 RTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQV 71
NRK + + N+ C A + G S L
Sbjct: 460 WNRKANRKVFGQWVSSSTL-NMSEAIKGFLVKCCAYNSLGTSCETILLNSPG 510
>2y25_A Myomesin; structural protein, sarcomere, M-BAND,
immunoglobulin-like D; 3.50A {Homo sapiens}
Length = 317
Score = 42.6 bits (100), Expect = 3e-06
Identities = 12/55 (21%), Positives = 21/55 (38%), Gaps = 3/55 (5%)
Query: 19 EGRTLPINRKQKVFPNG-TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+ R + ++ K TL+I + D Y + K +G SR L +
Sbjct: 44 DEREISVDEKHDFKDGICTLLITEF-SKKDAGIYEVILKDDRGKDKSRLKLVDEA 97
Score = 38.7 bits (90), Expect = 6e-05
Identities = 12/48 (25%), Positives = 17/48 (35%), Gaps = 2/48 (4%)
Query: 25 INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
N K + I V +D Y V K G +S T+ V +
Sbjct: 269 CNLKFEAGRTAYFTINGVST-ADSGKYGLVVKNKYGSETSDFTVSVFI 315
Score = 38.0 bits (88), Expect = 1e-04
Identities = 12/78 (15%), Positives = 20/78 (25%), Gaps = 5/78 (6%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQVMGI 74
G + + + K G L I +D+ Y + + L Q
Sbjct: 145 NGSAIRYSDRVKTGVTGEQIWLQINEP-TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDE 203
Query: 75 NEKPFSGLLPKINKETSP 92
F L E +
Sbjct: 204 AYAEFQRLKQAAIAEKNR 221
>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin,
beta-sandwich, mceacam1A - immunoglobulin FO spike NTD -
galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus
musculus} PDB: 1l6z_A*
Length = 208
Score = 42.3 bits (99), Expect = 3e-06
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 1/79 (1%)
Query: 1 MPPLLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
+ I + + + ++ ++ NG+L+ + + D YT
Sbjct: 37 NTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSLLFQMI-TMKDMGVYTLDMTDENY 95
Query: 61 YSSRGTLEVQVMGINEKPF 79
++ T+ V +PF
Sbjct: 96 RRTQATVRFHVHQPVTQPF 114
Score = 38.5 bits (89), Expect = 7e-05
Identities = 10/60 (16%), Positives = 22/60 (36%), Gaps = 4/60 (6%)
Query: 15 SFYTEGRTLPINRKQKVFPNG-TLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
+ ++L + + + N L I+ ++R D Y C S+ L++
Sbjct: 142 QWLFNSQSLQLTERMTLSQNNSILRIDPIKR-EDAGEYQCEISNPVSVRRSNSIKLDIIF 200
>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural
genomics, PSI-biology, NEW YORK struc genomics research
consortium, nysgrc; 2.30A {Homo sapiens}
Length = 124
Score = 41.1 bits (96), Expect = 4e-06
Identities = 8/65 (12%), Positives = 18/65 (27%), Gaps = 4/65 (6%)
Query: 7 FLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGT 66
F I+ + ++ + NV D+ Y C+ + +
Sbjct: 41 FTIFLNEYPVLKNSK---YQLLHHSANQLSITVPNV-TLQDEGVYKCLHYSDSVSTKEVK 96
Query: 67 LEVQV 71
+ V
Sbjct: 97 VIVLA 101
>3irg_B Obscurin-like protein 1; IG-like, titin, OBSL1, complex,
alternative splicing, ATP-binding, calcium,
calmodulin-binding, cardiomyopathy; 1.30A {Homo sapiens}
PDB: 3knb_B 2wp3_O* 2wwm_C 2wwk_O
Length = 107
Score = 40.4 bits (95), Expect = 5e-06
Identities = 11/57 (19%), Positives = 21/57 (36%), Gaps = 5/57 (8%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
G+ L + + +G L++ +D Y C A+ A G + + V
Sbjct: 50 GGQQLAASERLSFPADGAEHGLLLTAA-LPTDAGVYVCRARNAAGEAYAAAAVTVLE 105
>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus,
picornavirus, virus/receptor complex; 15.00A {Homo
sapiens} SCOP: i.6.1.1 PDB: 1dgi_R
Length = 302
Score = 42.0 bits (98), Expect = 5e-06
Identities = 13/72 (18%), Positives = 25/72 (34%), Gaps = 2/72 (2%)
Query: 2 PPLLLFLIYSYHQSFYTEGR-TLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
+ + S+ R R N +L + + R D+ YTC+ T
Sbjct: 45 SGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGL-RVEDEGNYTCLFVTFPQ 103
Query: 61 YSSRGTLEVQVM 72
S + ++V+
Sbjct: 104 GSRSVDIWLRVL 115
Score = 37.8 bits (87), Expect = 1e-04
Identities = 15/57 (26%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 15 SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
++ T LP V L+I V++ T C A G + + L VQV
Sbjct: 251 NWSTTMGPLP---PFAVAQGAQLLIRPVDK-PINTTLICNVTNALG-ARQAELTVQV 302
Score = 33.5 bits (76), Expect = 0.004
Identities = 11/64 (17%), Positives = 20/64 (31%), Gaps = 10/64 (15%)
Query: 17 YTEGRTLPINRKQKVFPNGT------LIIENVERQSDQATYTCVAK---TAQGYSSRGTL 67
+++ +P + F +GT I+ Q D TC + + L
Sbjct: 153 HSDLGGMPNTSQVPGFLSGTVTVTSLWILVPS-SQVDGKNVTCKVEHESFEKPQLLTVNL 211
Query: 68 EVQV 71
V
Sbjct: 212 TVYY 215
>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo
sapiens}
Length = 99
Score = 40.0 bits (94), Expect = 7e-06
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 5/58 (8%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQVM 72
+G+ + K K+ + L I SD YTC K + G SS L ++ +
Sbjct: 43 DGKAITQGGKYKLSEDKGGFFLEIHKT-DTSDSGLYTCTVKNSAGSVSSSCKLTIKAI 99
>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG
containing, ligand binding protein,membr protein; HET:
NAG MAN; 2.70A {Homo sapiens}
Length = 477
Score = 41.6 bits (98), Expect = 7e-06
Identities = 17/54 (31%), Positives = 24/54 (44%), Gaps = 4/54 (7%)
Query: 20 GRTLPINRKQK--VFPNGTLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEVQ 70
+ + VFP+GTL + + Q D TY C+A A G S L V+
Sbjct: 424 KHLVSAKSNGRLTVFPDGTLEVRYAQVQ-DNGTYLCIAANAGGNDSMPAHLHVR 476
>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4
complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB:
3zyo_A* 3zyn_A* 2dl9_A
Length = 452
Score = 41.3 bits (97), Expect = 8e-06
Identities = 13/50 (26%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 30 KVFPNGTLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEVQVMGINEKP 78
V +GTL +V D YTC+ G ++ L V G +
Sbjct: 402 SVLNDGTLNFSHVLLS-DTGVYTCMVTNVAGNSNASAYLNVSTAGTHHHH 450
>4dep_C Interleukin-1 receptor accessory protein; B-trefoil,
immunoglobulin, immune system, extracellular; HET: NAG;
3.10A {Homo sapiens} PDB: 3o4o_B*
Length = 349
Score = 41.4 bits (96), Expect = 8e-06
Identities = 17/75 (22%), Positives = 24/75 (32%), Gaps = 8/75 (10%)
Query: 24 PINRKQKVFPNG-TLIIENVERQSDQATYTCVAKTA---QGYSSRGTLEVQVMGINEKPF 79
I V P G L S+ YTCV + + TL V+V P
Sbjct: 165 KIQNFNNVIPEGMNLSFLIALI-SNNGNYTCVVTYPENGRTFHLTRTLTVKV---VGSPK 220
Query: 80 SGLLPKINKETSPSA 94
+ + P I+
Sbjct: 221 NAVPPVIHSPNDHVV 235
Score = 35.6 bits (81), Expect = 8e-04
Identities = 10/62 (16%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 11 SYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEV 69
E + + L I+ V + + +Y C A++A+G ++ ++
Sbjct: 274 ITIDVTINESISHSRTEDETR--TQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331
Query: 70 QV 71
+V
Sbjct: 332 KV 333
Score = 35.2 bits (80), Expect = 0.001
Identities = 7/38 (18%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
L +D YTC+ + S+ ++V
Sbjct: 78 KDVLWFRPT-LLNDTGNYTCMLRNTTY-CSKVAFPLEV 113
>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}
Length = 305
Score = 41.3 bits (97), Expect = 9e-06
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEVQV 71
LII +V D Y A G S +LEV+V
Sbjct: 61 YHQLIIASVTD-DDATVYQVRATNQGGSVSGTASLEVEV 98
Score = 35.1 bits (81), Expect = 0.001
Identities = 10/38 (26%), Positives = 13/38 (34%), Gaps = 2/38 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQ 70
+ VER D Y AK G + L+V
Sbjct: 160 TSLVFPNGVER-KDAGFYVVCAKNRFGIDQKTVELDVA 196
>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein,
serine/threonine-protein KI LIMB-girdle muscular
dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB:
2j8o_A 2ill_A
Length = 197
Score = 40.9 bits (96), Expect = 9e-06
Identities = 16/56 (28%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 26 NRKQKVFPNG--TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQVMGINEKP 78
+ + F G LII +V D Y A G S +LEV+V P
Sbjct: 51 KYRIQEFKGGYHQLIIASV-TDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLP 105
Score = 39.3 bits (92), Expect = 4e-05
Identities = 12/57 (21%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 19 EGRTLPINRKQKVFPNGT----LIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+ N +V + + VER D Y AK G L+V
Sbjct: 141 GQDLIDNNGHYQVIVTRSFTSLVFPNGVER-KDAGFYVVCAKNRFGIDQKTVELDVA 196
>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein;
2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A
Length = 154
Score = 40.6 bits (95), Expect = 9e-06
Identities = 15/65 (23%), Positives = 26/65 (40%), Gaps = 6/65 (9%)
Query: 19 EGRTLPINRKQKVFPNG----TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQVMG 73
+ + +R ++ + +L I V D A YTC A + G + L V+ MG
Sbjct: 78 DDNPVKESRHFQIDYDEEGNCSLTISEV-CGDDDAKYTCKAVNSLGEATCTAELLVETMG 136
Query: 74 INEKP 78
+
Sbjct: 137 KEGEG 141
>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 103
Score = 39.6 bits (93), Expect = 1e-05
Identities = 22/66 (33%), Positives = 27/66 (40%), Gaps = 9/66 (13%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75
L + K + G L I +E ++D TYTC AQ SR L VQ G
Sbjct: 44 GLLELRASGKHQPSQEGLTLRLTISALE-KADSDTYTCDIGQAQ---SRAQLLVQ--GRR 97
Query: 76 EKPFSG 81
P SG
Sbjct: 98 SGPSSG 103
>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family,
cellular adhesion, ligand-independent DIME mutational
analysis, transferase; HET: EPE; 1.96A {Homo sapiens}
SCOP: b.1.1.1 b.1.1.4
Length = 182
Score = 40.6 bits (95), Expect = 1e-05
Identities = 13/61 (21%), Positives = 23/61 (37%), Gaps = 8/61 (13%)
Query: 19 EGRTLPINRKQKVF-----PNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
+G + + + G L +++VER SD Y C + S L V+
Sbjct: 39 DGAVVQNLDQLYIPVSEQHWIGFLSLKSVER-SDAGRYWCQVEDGGETEISQPVWLTVEG 97
Query: 72 M 72
+
Sbjct: 98 V 98
Score = 35.2 bits (81), Expect = 8e-04
Identities = 6/39 (15%), Positives = 14/39 (35%), Gaps = 1/39 (2%)
Query: 33 PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
++ + ++C A +G +S T V +
Sbjct: 144 APSPSVLNVTGV-TQSTMFSCEAHNLKGLASSRTATVHL 181
>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse;
HET: NAG BMA MAN; 3.25A {Homo sapiens}
Length = 440
Score = 40.9 bits (96), Expect = 1e-05
Identities = 14/54 (25%), Positives = 23/54 (42%), Gaps = 2/54 (3%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPF 79
+ V +GTL NV Q D YTC+ + G ++ + + V G +
Sbjct: 388 KVRIAVLSDGTLNFTNVTVQ-DTGMYTCMVSNSVGNTTA-SATLNVTGTHHHHH 439
>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor,
tight junction formation, immunoglobulin superfamily,
immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1
b.1.1.4 PDB: 3eoy_G
Length = 209
Score = 40.7 bits (95), Expect = 1e-05
Identities = 9/52 (17%), Positives = 19/52 (36%), Gaps = 2/52 (3%)
Query: 21 RTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
R + G L+ + + SD Y+C A+ G + + ++
Sbjct: 157 RAFSNSSYVLNPTTGELVFDPL-SASDTGEYSCEARNGYGTPMTSNAVRMEA 207
Score = 40.3 bits (94), Expect = 1e-05
Identities = 11/61 (18%), Positives = 20/61 (32%), Gaps = 4/61 (6%)
Query: 14 QSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY---SSRGTLEVQ 70
+ + + F + ++V + D TYTC+ G + L V
Sbjct: 47 RLVCYNNKITASYEDRVTFLPTGITFKSV-TREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105
Query: 71 V 71
V
Sbjct: 106 V 106
>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 110
Score = 39.6 bits (93), Expect = 1e-05
Identities = 16/47 (34%), Positives = 19/47 (40%), Gaps = 4/47 (8%)
Query: 36 TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQVMGINEKPFSG 81
+L D YT +A QG S G L VQ +N P SG
Sbjct: 67 SLHTTAS-TLDDDGNYTIMAANPQGRISCTGRLMVQ--AVNSGPSSG 110
>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain,
immunoglobulin fold, alternative splicing, signal,
muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB:
1ncu_A 1tnm_A 1tnn_A
Length = 106
Score = 39.3 bits (92), Expect = 1e-05
Identities = 14/58 (24%), Positives = 28/58 (48%), Gaps = 5/58 (8%)
Query: 17 YTEGRTLPINRKQKVF---PNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+G+ L + + +V T I +V + SD+ Y+ V + ++G + TL +Q
Sbjct: 49 LRKGQVLSTSARHQVTTTKYKSTFEISSV-QASDEGNYSVVVENSEGKQEAEFTLTIQ 105
>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet,
STRU genomics, berkeley structural genomics center,
BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A
Length = 137
Score = 39.6 bits (92), Expect = 2e-05
Identities = 9/51 (17%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 21 RTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEVQ 70
+ I+ T+ I+ + + D TY C A V+
Sbjct: 76 DRVHIHATYHQHAASTISIDTL-VEEDTGTYECRASNDPDRNHLTRAPRVK 125
>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain,
cell adhesion, cell junction, glycoprotein,
immunoglobulin domain, membrane; HET: NAG FUC; 2.19A
{Mus musculus} PDB: 3mj7_A* 3mj9_A*
Length = 268
Score = 40.2 bits (93), Expect = 2e-05
Identities = 13/55 (23%), Positives = 26/55 (47%), Gaps = 5/55 (9%)
Query: 33 PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGLLPKIN 87
+G++ ++ V ++SDQ YTC + SR T+ + V+ + F +
Sbjct: 199 NDGSIKLQTV-KESDQGIYTCSIYVGKL-ESRKTIVLHVV---QDEFQRTISPTP 248
Score = 37.5 bits (86), Expect = 2e-04
Identities = 9/39 (23%), Positives = 23/39 (58%), Gaps = 2/39 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+G+L++++V +++D+ YTC + + +E+ V
Sbjct: 83 DGSLLLQDV-QKADEGIYTCEIRLKNESMVMKKPVELWV 120
>2v9t_A Roundabout homolog 1; structural protein-receptor complex,
developmental protein, domain, roundabout, chemotaxis,
LRR domain; 1.70A {Homo sapiens}
Length = 117
Score = 39.4 bits (92), Expect = 2e-05
Identities = 13/48 (27%), Positives = 21/48 (43%), Gaps = 6/48 (12%)
Query: 31 VFPNGTLIIENVE----RQSDQATYTCVAKTAQG--YSSRGTLEVQVM 72
+ P+G+L + + D+ Y CVA+ G S +LEV
Sbjct: 63 LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAAA 110
>2kkq_A Myotilin; unknown function, actin-binding, cell membrane,
cytoplasm, cytoskeleton, disease mutation,
immunoglobulin domain; NMR {Homo sapiens}
Length = 116
Score = 39.3 bits (92), Expect = 2e-05
Identities = 12/61 (19%), Positives = 23/61 (37%), Gaps = 7/61 (11%)
Query: 17 YTEGRTLPIN-RKQKVFPNG----TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+ N + ++ + TL+I++V + D YT A G + L+V
Sbjct: 50 KRNNEMVQFNTDRISLYQDNTGRVTLLIKDV-NKKDAGWYTVSAVNEAGVTTCNTRLDVT 108
Query: 71 V 71
Sbjct: 109 A 109
>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 104
Score = 38.9 bits (91), Expect = 2e-05
Identities = 12/66 (18%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75
G+T+ + + + G L++ SD + +S+ +L V+
Sbjct: 46 GGKTVGSSSRFQATRQGRKYILVVREA-APSDAGEVVFSVRGL---TSKASLIVRE---R 98
Query: 76 EKPFSG 81
P SG
Sbjct: 99 SGPSSG 104
>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural
genomics, IG-fold I-SET, RGD motif, homophilic
adhesion, arterial smooth muscle cells; 0.96A {Homo
sapiens}
Length = 99
Score = 38.4 bits (90), Expect = 2e-05
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 6/57 (10%)
Query: 19 EGRTLPIN-RKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+ + + R+ G L I ER D YTC A G LEV+
Sbjct: 42 NRQPVRPDQRRFAEEAEGGLCRLRILAAER-GDAGFYTCKAVNEYGARQCEARLEVR 97
>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF
receptor, cancer, immune system-transfer complex; HET:
NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X
Length = 122
Score = 39.0 bits (90), Expect = 2e-05
Identities = 21/67 (31%), Positives = 27/67 (40%), Gaps = 6/67 (8%)
Query: 13 HQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
H+ + K F TL I+ V +SDQ YTC A + T V+V
Sbjct: 53 HKKLVNRDLKTQSGSEMKKF-LSTLTIDGV-TRSDQGLYTCAASSGLMTKKNST-FVRVH 109
Query: 73 GINEKPF 79
EKPF
Sbjct: 110 ---EKPF 113
>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral
protein-immune system compl; HET: NAG SUC; 1.99A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B*
2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C*
3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A
3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...
Length = 184
Score = 39.6 bits (92), Expect = 2e-05
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 8 LIYSYHQSFYTEGRTLPINR-----KQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYS 62
I SF T+G + +R N LII+N+ + D TY C + +
Sbjct: 36 KILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNL-KIEDSDTYICEVEDQKEEV 94
Query: 63 SRGTLEVQV 71
+
Sbjct: 95 QLLVFGLTA 103
Score = 37.6 bits (87), Expect = 1e-04
Identities = 11/48 (22%), Positives = 20/48 (41%), Gaps = 2/48 (4%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73
R + + TL + +E Q D T+TC Q +++ V+
Sbjct: 134 PRGKNIQGGKTLSVSQLELQ-DSGTWTCTVLQNQKKVEF-KIDIVVLA 179
>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein
complex, growth factor-receptor complex, TRA hormone
complex; HET: NDG NAG; 2.30A {Homo sapiens}
Length = 289
Score = 39.7 bits (92), Expect = 3e-05
Identities = 10/47 (21%), Positives = 16/47 (34%), Gaps = 5/47 (10%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEVQVMGINEKPF 79
L I + E D TYTC + + + + V+ E
Sbjct: 241 RSILHIPSAEL-EDSGTYTCNVTESVNDHQDEKAINITVV---ESGH 283
Score = 33.1 bits (75), Expect = 0.006
Identities = 7/48 (14%), Positives = 17/48 (35%), Gaps = 1/48 (2%)
Query: 24 PINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
+ + Q + L + N+ D Y C ++G + + +
Sbjct: 40 EMAKAQDGTFSSVLTLTNL-TGLDTGEYFCTHNDSRGLETDERKRLYI 86
Score = 25.4 bits (55), Expect = 3.5
Identities = 4/35 (11%), Positives = 9/35 (25%)
Query: 46 SDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFS 80
+ +Y C V + ++ S
Sbjct: 151 FEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVS 185
>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton,
immunoglobulin domain, muscle protein, phosphorylation,
repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A
1tiu_A 2rq8_A
Length = 93
Score = 38.0 bits (89), Expect = 3e-05
Identities = 10/55 (18%), Positives = 21/55 (38%), Gaps = 7/55 (12%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70
+G+ L + ++ +G LI+ N + + A S L+V+
Sbjct: 41 KGQPLAASPDCEIIEDGKKHILILHNC-QLGMTGEVSFQAANT---KSAANLKVK 91
>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national
project on protein structural and functional analyses;
NMR {Homo sapiens} PDB: 2yz8_A
Length = 103
Score = 38.1 bits (89), Expect = 3e-05
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 9/68 (13%)
Query: 17 YTEGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73
L K + G L++ N+ R D Y+C ++ TL V
Sbjct: 42 CYGNNVLRPGDKYSLRQEGAMLELVVRNL-RPQDSGRYSCSFGDQ---TTSATLTVT--A 95
Query: 74 INEKPFSG 81
+ P SG
Sbjct: 96 LPSGPSSG 103
>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin,
actin-associated scaffold, structural genomics, NPPSFA;
NMR {Homo sapiens}
Length = 110
Score = 38.1 bits (89), Expect = 4e-05
Identities = 21/67 (31%), Positives = 31/67 (46%), Gaps = 6/67 (8%)
Query: 19 EGRTLPINRKQKVF--PNG--TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGI 74
+G+ + + K+ NG +LIIE V D YTC+A G + +LE+ V
Sbjct: 46 DGKPVRPDSAHKMLVRENGVHSLIIEPV-TSRDAGIYTCIATNRAG-QNSFSLELVVAAK 103
Query: 75 NEKPFSG 81
P SG
Sbjct: 104 ESGPSSG 110
>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell
adhesion molecule, immunoglobuline superfamily,
alternative splicing, cell adhesion; 2.19A {Mus
musculus} PDB: 3mj7_B* 2npl_X
Length = 214
Score = 39.3 bits (91), Expect = 4e-05
Identities = 12/39 (30%), Positives = 20/39 (51%), Gaps = 2/39 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
+ ++ + N+ + SD TY C K A G + + L V V
Sbjct: 83 DASINVTNL-QLSDIGTYQCKVKKAPGVANKKFLLTVLV 120
Score = 35.4 bits (81), Expect = 8e-04
Identities = 8/55 (14%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73
+ + ++N TY+C + G S + L + V+
Sbjct: 160 SDSQTMPTPWLAEMTSPVISVKNA-SSEYSGTYSCTVQNRVG-SDQCMLRLDVVP 212
>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily.,
cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A
Length = 231
Score = 39.4 bits (91), Expect = 4e-05
Identities = 13/77 (16%), Positives = 25/77 (32%), Gaps = 1/77 (1%)
Query: 2 PPLLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY 61
P L + T T + ++ G L++ + D+ Y CV +
Sbjct: 44 RPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQGRLVLAEA-QVGDERDYVCVVRAGAAG 102
Query: 62 SSRGTLEVQVMGINEKP 78
++ T + V E
Sbjct: 103 TAEATARLNVFAKPEAT 119
>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon,
OKT3 FAB, signaling protein/antibiotic complex; 2.10A
{Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*
Length = 204
Score = 39.1 bits (90), Expect = 4e-05
Identities = 5/55 (9%), Positives = 17/55 (30%), Gaps = 2/55 (3%)
Query: 20 GRTLPINRKQKVFPNG--TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
+ + + K + L ++ Y C + ++ + L ++
Sbjct: 149 DKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRAR 203
Score = 24.5 bits (52), Expect = 6.6
Identities = 4/41 (9%), Positives = 12/41 (29%), Gaps = 5/41 (12%)
Query: 20 GRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
G+ + + K + + + + Y C +
Sbjct: 38 GKMIGFLTEDKK----KWNLGSNAK-DPRGMYQCKGSQNKS 73
>2fbo_J V1V2;, variable region-containing chitin-binding protein 3;
immunoglobulin, VCBP, V-type, V SET, immune system;
1.85A {Branchiostoma floridae}
Length = 250
Score = 39.5 bits (91), Expect = 4e-05
Identities = 9/52 (17%), Positives = 14/52 (26%), Gaps = 1/52 (1%)
Query: 13 HQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR 64
F + I + L+I + +D C T QG
Sbjct: 191 KNQFGITWFSSEIAGRASFSGARNLVIRAA-KITDAGRVWCELATGQGELDA 241
Score = 31.4 bits (70), Expect = 0.024
Identities = 8/38 (21%), Positives = 11/38 (28%), Gaps = 1/38 (2%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
TL + +V D Y C + G V
Sbjct: 89 APTLRLTHV-HPQDGGRYWCQVAQWSIRTEFGLDAKSV 125
>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling
protein complex, angiogenesis, glycoprotein, HOST-virus
interaction, membrane; HET: NAG BMA; 2.70A {Homo
sapiens} PDB: 2x1x_R*
Length = 213
Score = 39.4 bits (91), Expect = 4e-05
Identities = 16/49 (32%), Positives = 21/49 (42%), Gaps = 5/49 (10%)
Query: 33 PNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSG 81
TL I+ V +SDQ YTC A + + V+V E P G
Sbjct: 169 FLSTLTIDGV-TRSDQGLYTCAASSGLMTKKN-STFVRVH---EDPIEG 212
Score = 27.1 bits (59), Expect = 0.78
Identities = 13/56 (23%), Positives = 18/56 (32%), Gaps = 2/56 (3%)
Query: 17 YTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKT-AQGYSSRGTLEVQV 71
Y E R +P + I + S C AK + Y S + V V
Sbjct: 46 YPEKRFVPDGNRISWDSKKGFTIPSY-MISYAGMVFCEAKINDESYQSIMYIVVVV 100
>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND,
structural protein, muscle, antibo; 1.69A {Homo
sapiens}
Length = 97
Score = 37.7 bits (88), Expect = 4e-05
Identities = 14/58 (24%), Positives = 23/58 (39%), Gaps = 5/58 (8%)
Query: 17 YTEGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
Y R L + K ++ L ++++ + D TY C G SS L V+
Sbjct: 37 YFGVRQLENSEKYEITYEDGVAILYVKDI-TKLDDGTYRCKVVNDYGEDSSYAELFVK 93
>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK
receptor, receptor tyrosine kinase, 3D-domain swapping,
transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB:
1hcf_X
Length = 103
Score = 37.8 bits (88), Expect = 5e-05
Identities = 10/45 (22%), Positives = 16/45 (35%), Gaps = 5/45 (11%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78
+G L ++N + YT +AK G + M P
Sbjct: 61 HGCLQLDNPTH-MNNGDYTLIAKNEYG-KDEKQISAHFM---GWP 100
>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A
2f8v_A
Length = 194
Score = 38.9 bits (91), Expect = 5e-05
Identities = 13/56 (23%), Positives = 23/56 (41%), Gaps = 5/56 (8%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+G + + ++ G +L+I D TY+ A + G +S L VQ
Sbjct: 140 DGAEIQSSLDFQISQEGDLYSLLIAEA-YPEDSGTYSVNATNSVGRATSTAELLVQ 194
Score = 37.0 bits (86), Expect = 2e-04
Identities = 9/38 (23%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
L I V +++ Y+ A G +S L V+
Sbjct: 62 RAKLTIPAV-TKANSGRYSLKATNGSGQATSTAELLVK 98
>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase,
heparin-binding, nucleotide-binding, immunoglobulin
domain, alternatice splicing; NMR {Mus musculus}
Length = 95
Score = 37.5 bits (87), Expect = 6e-05
Identities = 8/54 (14%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 17 YTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEV 69
+G L + + ++ + + + +D Y CV + G + ++ V
Sbjct: 43 LRDGVQLVESNRTRI-TGEEVEVRDS-IPADSGLYACVTSSPSGSDTTYFSVNV 94
>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA,
receptor-ligand complex transferase; HET: NAG NDG MAN
BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7
Length = 347
Score = 39.0 bits (90), Expect = 6e-05
Identities = 8/48 (16%), Positives = 16/48 (33%), Gaps = 5/48 (10%)
Query: 31 VFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78
+G L + + YT +A G + ++ M + P
Sbjct: 305 TVRHGCLRLNQPTHV-NNGNYTLLAANPFG-QASASIMAAFM---DNP 347
Score = 38.6 bits (89), Expect = 7e-05
Identities = 13/56 (23%), Positives = 22/56 (39%), Gaps = 1/56 (1%)
Query: 16 FYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
TE K P+ L + NV ++ TC A+ G + +++V V
Sbjct: 193 ILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEV-SVQVNV 247
>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer,
immunoglobul domain, muscle protein, thick filament,
contractIle protein; 2.24A {Homo sapiens}
Length = 212
Score = 38.7 bits (90), Expect = 6e-05
Identities = 12/77 (15%), Positives = 20/77 (25%), Gaps = 5/77 (6%)
Query: 20 GRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEVQVMGIN 75
G + + + K G L I +D+ Y + + L Q
Sbjct: 41 GSAIRYSDRVKTGVTGEQIWLQINEP-TPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEA 99
Query: 76 EKPFSGLLPKINKETSP 92
F L E +
Sbjct: 100 YAEFQRLKQAAIAEKNR 116
Score = 36.8 bits (85), Expect = 3e-04
Identities = 10/39 (25%), Positives = 14/39 (35%), Gaps = 2/39 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
I V +D Y V K G +S T+ V +
Sbjct: 173 TAYFTINGVST-ADSGKYGLVVKNKYGSETSDFTVSVFI 210
>3eow_R Poliovirus receptor; immunoglobulin super family, alternative
splicing, cell adhesion, cell membrane, glycoprotein,
HOST-virus interaction; 3.50A {Homo sapiens} PDB: 3uro_R
3epc_R* 3epd_R* 3epf_R*
Length = 221
Score = 38.9 bits (90), Expect = 6e-05
Identities = 15/94 (15%), Positives = 32/94 (34%), Gaps = 2/94 (2%)
Query: 2 PPLLLFLIYSYHQSFYTEGR-TLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
+ + S+ R R + +L + + R D+ +YTC+ T
Sbjct: 44 SGSMAVFHQTQGPSYSESKRLEFVAARLGAELRDASLRMFGL-RVEDEGSYTCLFVTFPQ 102
Query: 61 YSSRGTLEVQVMGINEKPFSGLLPKINKETSPSA 94
S + ++V+ + ++ E P A
Sbjct: 103 GSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMA 136
Score = 27.0 bits (59), Expect = 0.91
Identities = 10/64 (15%), Positives = 23/64 (35%), Gaps = 8/64 (12%)
Query: 15 SFYTEGRTLPINRKQKVFPNGTLIIE-----NVERQSDQATYTCVAK---TAQGYSSRGT 66
+++++ +P + F +GT+ + Q D TC + + +
Sbjct: 150 TWHSDLGGMPQTSQVPGFLSGTVTVTSLWILVPSSQVDGKQVTCKVEHESFEKPQLLTVS 209
Query: 67 LEVQ 70
L V
Sbjct: 210 LTVY 213
>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold,
transmembrane, MHC lipoprotein, polymorphism; 3.90A
{Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3
PDB: 1wip_A 1wiq_A 3t0e_E
Length = 363
Score = 39.0 bits (90), Expect = 6e-05
Identities = 15/69 (21%), Positives = 24/69 (34%), Gaps = 6/69 (8%)
Query: 8 LIYSYHQSFYTEGRTLPINRKQKVF-----PNGTLIIENVERQSDQATYTCVAKTAQGYS 62
I SF T+G + +R N LII+N+ + D TY C + +
Sbjct: 35 KILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNL-KIEDSDTYICEVEDQKEEV 93
Query: 63 SRGTLEVQV 71
+
Sbjct: 94 QLLVFGLTA 102
Score = 38.6 bits (89), Expect = 7e-05
Identities = 11/53 (20%), Positives = 21/53 (39%), Gaps = 2/53 (3%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78
R + + TL + +E Q D T+TC Q +++ V+ +
Sbjct: 133 PRGKNIQGGKTLSVSQLELQ-DSGTWTCTVLQNQKKVEF-KIDIVVLAFQKAS 183
Score = 30.5 bits (68), Expect = 0.049
Identities = 9/77 (11%), Positives = 24/77 (31%), Gaps = 2/77 (2%)
Query: 2 PPLLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY 61
+ F + + S + + +K+ + TL + + T + G
Sbjct: 224 KSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALP-QYAGSGNLTLALEAKTGK 282
Query: 62 SSRGTLEVQVMGINEKP 78
+ + + VM +
Sbjct: 283 LHQ-EVNLVVMRATQLQ 298
>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond,
glycoprotein, immunoglobulin membrane, transmembrane;
HET: NAG; 2.21A {Mus musculus}
Length = 108
Score = 37.5 bits (87), Expect = 6e-05
Identities = 12/65 (18%), Positives = 23/65 (35%), Gaps = 4/65 (6%)
Query: 7 FLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGT 66
+Y + + R + ++ + +V SD+ YTC T +S+
Sbjct: 46 QTLYFDDKKALRDNRIELVRASWHEL---SISVSDV-SLSDEGQYTCSLFTMPVKTSKAY 101
Query: 67 LEVQV 71
L V
Sbjct: 102 LTVLG 106
>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like
protein 3, nephrin- like 2, structural genomics, NPPSFA;
NMR {Homo sapiens} SCOP: b.1.1.1
Length = 122
Score = 37.6 bits (87), Expect = 7e-05
Identities = 15/48 (31%), Positives = 21/48 (43%), Gaps = 2/48 (4%)
Query: 35 GTLIIENVERQSDQATYTCVAKTAQGYSSRG-TLEVQVMGINEKPFSG 81
TL I N+ R Q Y C A + G + L+ Q ++ P SG
Sbjct: 76 STLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQGSEMS-GPSSG 122
>2edh_A Obscurin; structural genomics, NPPSFA, national project on P
structural and functional analyses, riken structural
genomics/proteomics initiative; NMR {Homo sapiens}
Length = 113
Score = 37.3 bits (87), Expect = 8e-05
Identities = 13/66 (19%), Positives = 21/66 (31%), Gaps = 9/66 (13%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75
TL + + +G L I + D Y C+ + L V+ +
Sbjct: 54 GHETLRDGDRHSLRQDGARCELQIRGL-VAEDAGEYLCMCGKE---RTSAMLTVR--AMP 107
Query: 76 EKPFSG 81
P SG
Sbjct: 108 SGPSSG 113
>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein,
neurite growth regulation; HET: NAG BMA; 2.00A {Mus
musculus}
Length = 361
Score = 38.7 bits (90), Expect = 8e-05
Identities = 11/48 (22%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 31 VFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78
NG L + V + D YTC A + ++E++V
Sbjct: 297 SVRNGDLFFKKV-QVEDGGVYTCYAMGETF-NETLSVELKVYNFTLHG 342
>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor
tyrosine kinase, 3D-domain swapping, transferase; 1.90A
{Homo sapiens} SCOP: b.1.1.4
Length = 118
Score = 37.5 bits (87), Expect = 8e-05
Identities = 10/47 (21%), Positives = 19/47 (40%), Gaps = 5/47 (10%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFS 80
G L+ + YT +AK G ++ T+ + ++PF
Sbjct: 64 EGCLLFNKPTH-YNNGNYTLIAKNPLG-TANQTINGHFL---KEPFP 105
>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural
protein, cell membrane, cytoplasm, cytoskeleton,
disease mutation, immunoglobulin domain; NMR {Homo
sapiens}
Length = 100
Score = 37.3 bits (87), Expect = 8e-05
Identities = 19/57 (33%), Positives = 26/57 (45%), Gaps = 6/57 (10%)
Query: 20 GRTLPINRKQKVFPNG----TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQV 71
GRT+ + K+ + +LI E V R SD Y CVAK G + L+V
Sbjct: 43 GRTVQSDDLHKMIVSEKGLHSLIFEVV-RASDAGAYACVAKNRAGEATFTVQLDVLA 98
>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1,
isoform 2; hydrolase, immunoglobulin domain, nucleus,
protease; 2.80A {Homo sapiens}
Length = 218
Score = 38.3 bits (89), Expect = 8e-05
Identities = 10/55 (18%), Positives = 14/55 (25%), Gaps = 9/55 (16%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
+ +P LI V D Y C +S L+V
Sbjct: 55 MNKEIPNGN------TSELIFNAV-HVKDAGFYVCRVNNNFTFEFSQWSQLDVCD 102
Score = 34.9 bits (80), Expect = 0.002
Identities = 6/40 (15%), Positives = 12/40 (30%), Gaps = 3/40 (7%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQV 71
++ V Q TY C + S + + +
Sbjct: 164 KKLYMVPYV-DLEHQGTYWCHVYNDRDSQDSKKVEIIIDE 202
>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens} PDB: 2edl_A
2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A
Length = 108
Score = 37.4 bits (87), Expect = 8e-05
Identities = 14/78 (17%), Positives = 27/78 (34%), Gaps = 17/78 (21%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75
TL + + +G L I ++ +D Y+C+ + TL V+
Sbjct: 43 GPETLRDGGRYSLKQDGTRCELQIHDL-SVADAGEYSCMCGQE---RTSATLTVR----- 93
Query: 76 EKPFSGLLPKINKETSPS 93
P + + + PS
Sbjct: 94 ALP-----ARFTEGSGPS 106
>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion;
2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4
Length = 184
Score = 38.1 bits (88), Expect = 9e-05
Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQ 70
L IEN+ ++D Y C +++G TL V+
Sbjct: 145 RSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 182
Score = 29.6 bits (66), Expect = 0.11
Identities = 4/40 (10%), Positives = 9/40 (22%), Gaps = 3/40 (7%)
Query: 32 FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
P + Y+CV +++
Sbjct: 46 LPGQKTEFKVD-SDDQWGEYSCVFLPEPM--GTANIQLHG 82
>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system;
HET: NAG MAN FUC P33; 2.65A {Homo sapiens}
Length = 262
Score = 38.4 bits (89), Expect = 9e-05
Identities = 13/58 (22%), Positives = 19/58 (32%), Gaps = 7/58 (12%)
Query: 15 SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRG-TLEVQV 71
+Y G+ N L I S TY C Y+S G ++ V+
Sbjct: 116 LYYRNGKAFKFFHW-----NSNLTILKT-NISHNGTYHCSGMGKHRYTSAGISVTVKE 167
Score = 36.8 bits (85), Expect = 3e-04
Identities = 14/58 (24%), Positives = 22/58 (37%), Gaps = 6/58 (10%)
Query: 15 SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
SFY +TL + + I R D Y C A T G + + E+++
Sbjct: 208 SFYMGSKTL-----RGRNTSSEYQILTARR-EDSGLYWCEAATEDGNVLKRSPELELQ 259
Score = 27.6 bits (61), Expect = 0.52
Identities = 5/46 (10%), Positives = 12/46 (26%), Gaps = 8/46 (17%)
Query: 15 SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
++ G + + I + +D Y C +
Sbjct: 35 QWFLNGTATQTS-------TPSYRITSA-SVNDSGEYRCQRGLSGR 72
>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding,
disease MU ectodermal dysplasia, glycoprotein,
heparin-binding, immuno domain, kinase; 1.96A {Homo
sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A
Length = 100
Score = 37.0 bits (86), Expect = 1e-04
Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEV 69
+ +LI+E+V SD+ YTCV + G + L+V
Sbjct: 64 HWSLIMESV-VPSDKGNYTCVVENEYGSINHTYHLDV 99
>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo
sapiens}
Length = 103
Score = 36.9 bits (86), Expect = 1e-04
Identities = 16/58 (27%), Positives = 20/58 (34%), Gaps = 5/58 (8%)
Query: 17 YTEGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
Y G L + K TL I + D TY V +G S TL+V
Sbjct: 43 YHNGVELQESSKIHYTNTSGVLTLEILDC-HTDDSGTYRAVCTNYKGEASDYATLDVT 99
>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 115
Score = 37.0 bits (86), Expect = 1e-04
Identities = 11/69 (15%), Positives = 17/69 (24%), Gaps = 11/69 (15%)
Query: 20 GRTLPINRKQKVFPNG----TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ---VM 72
L N ++ L + + D T A + L V +
Sbjct: 51 KTPLHANELNEIDAQPGGYHVLTLRQL-ALKDSGTIYFEAGDQ---RASAALRVTEKPSV 106
Query: 73 GINEKPFSG 81
P SG
Sbjct: 107 FSRSGPSSG 115
>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding
protein C, immunoglobulin domain, structural genomics,
NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A
Length = 100
Score = 36.6 bits (85), Expect = 1e-04
Identities = 15/68 (22%), Positives = 22/68 (32%), Gaps = 12/68 (17%)
Query: 17 YTEGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73
Y G+ + + K G L I N + +D + Y A L V+
Sbjct: 42 YKNGQEIRPSTKYIFEHKGCQRILFINNC-QMTDDSEYYVTAGDE---KCSTELFVR--- 94
Query: 74 INEKPFSG 81
P SG
Sbjct: 95 --SGPSSG 100
>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-
like; 2.50A {Homo sapiens}
Length = 312
Score = 38.0 bits (88), Expect = 1e-04
Identities = 12/85 (14%), Positives = 29/85 (34%), Gaps = 7/85 (8%)
Query: 15 SFYTEGRTLPINRKQKVFPNG-----TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLE 68
++ + + K K+ + + +E + + D+ TYT + + S L
Sbjct: 141 NYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKL-QDEDEGTYTFQLQDGKATNHSTVVLV 199
Query: 69 VQVMGINEKPFSGLLPKINKETSPS 93
V +K + ++ P
Sbjct: 200 GDVFKKLQKEAEFQRQEWIRKQGPH 224
Score = 36.9 bits (85), Expect = 3e-04
Identities = 7/56 (12%), Positives = 21/56 (37%), Gaps = 4/56 (7%)
Query: 20 GRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
+ + + +V G + +++ D Y+C G +S ++ + +
Sbjct: 40 YVSTEDSPRLEVESKGNKTKMTFKDL-GMDDLGIYSCDVTDTDGIASSYLIDEEEL 94
Score = 34.2 bits (78), Expect = 0.002
Identities = 10/38 (26%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
TL+I + D Y + K +G SR L +
Sbjct: 275 ICTLLITEFSK-KDAGIYEVILKDDRGKDKSRLKLVDE 311
>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin
domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr
virus}
Length = 201
Score = 37.7 bits (87), Expect = 1e-04
Identities = 7/39 (17%), Positives = 12/39 (30%), Gaps = 2/39 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEVQV 71
L++ S Y C K + + + L V
Sbjct: 66 TFFLVVTAANI-SHDGNYLCRMKLGETEVTKQEHLSVVK 103
Score = 36.9 bits (85), Expect = 3e-04
Identities = 7/37 (18%), Positives = 12/37 (32%), Gaps = 2/37 (5%)
Query: 26 NRKQKVFPNGTLIIENVE--RQSDQATYTCVAKTAQG 60
N +G+L + + TCV K +
Sbjct: 152 NGGVMKEKDGSLSVAVDLSLPKPWHLPVTCVGKNDKE 188
>3irg_A Titin; IG-like, titin, OBSL1, complex, alternative splicing,
ATP-binding, calcium, calmodulin-binding,
cardiomyopathy; 1.30A {Homo sapiens} PDB: 3knb_A 3q5o_A
2wp3_T* 2wwk_T 2wwm_D 2y9r_T*
Length = 100
Score = 36.5 bits (85), Expect = 1e-04
Identities = 12/58 (20%), Positives = 22/58 (37%), Gaps = 7/58 (12%)
Query: 19 EGRTLPI--NRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
GR + + + TLII +V++ D YT G S+ + ++
Sbjct: 42 GGRKIHSQEQGRFHIENTDDLTTLIIMDVQK-QDGGLYTLSLGNEFGSDSATVNIHIR 98
>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2,
structural genomics, NPPSFA; NMR {Mus musculus}
Length = 106
Score = 36.2 bits (84), Expect = 2e-04
Identities = 16/68 (23%), Positives = 27/68 (39%), Gaps = 6/68 (8%)
Query: 17 YTEGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73
Y G + +++ + G L+I++V R D+ YT V S L +
Sbjct: 42 YKNGVEVRPSKRITISHVGRFHKLVIDDV-RPEDEGDYTFVPDGYAL-SLSAKLNFLEIK 99
Query: 74 INEKPFSG 81
+ P SG
Sbjct: 100 V-SGPSSG 106
>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed
death-1 ligand 1, complex, costimulatory, immune system;
2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A
Length = 222
Score = 37.3 bits (86), Expect = 2e-04
Identities = 13/69 (18%), Positives = 20/69 (28%), Gaps = 2/69 (2%)
Query: 10 YSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEV 69
Q R + + Q N L I +V + D Y C+ R T++V
Sbjct: 56 DLKVQHSSYRQRA-RLLKDQLSLGNAALQITDV-KLQDAGVYRCMISYGGADYKRITVKV 113
Query: 70 QVMGINEKP 78
Sbjct: 114 NAPYNKINQ 122
>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW-
type/skeletal muscle SLOW-isoform, structural genomics,
NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4
Length = 103
Score = 36.2 bits (84), Expect = 2e-04
Identities = 13/46 (28%), Positives = 18/46 (39%), Gaps = 7/46 (15%)
Query: 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSG 81
LIIE ++D A Y+ + S L V + P SG
Sbjct: 65 ILIIEGA-TKADAAEYSVMTTGG---QSSAKLSVDL---KSGPSSG 103
>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain,
SLOW-type myosin-binding protein C, structural genomics,
NPPSFA; NMR {Homo sapiens}
Length = 100
Score = 36.2 bits (84), Expect = 2e-04
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 10/66 (15%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75
G + + + KV G L+I N D+ Y + + V
Sbjct: 42 NGLPVQESDRLKVVQKGRIHKLVIANA-LTEDEGDYVFAPDAYNV-TLPAKVHVI----- 94
Query: 76 EKPFSG 81
P SG
Sbjct: 95 SGPSSG 100
>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural
genomics, NPPSFA, national project on protein structural
and functional analyses; NMR {Homo sapiens}
Length = 113
Score = 35.9 bits (83), Expect = 3e-04
Identities = 14/69 (20%), Positives = 23/69 (33%), Gaps = 10/69 (14%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ---VM 72
+G + + + L++ V + D Y C S+ T+ V V
Sbjct: 49 DGEEVVESPALLLQKEDTVRRLVLPAV-QLEDSGEYLCEIDDE---SASFTVTVTEPPVR 104
Query: 73 GINEKPFSG 81
I P SG
Sbjct: 105 IIYSGPSSG 113
>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain,
beta-sandwhich, I-SET, structural protein; 2.10A {Homo
sapiens} SCOP: b.1.1.4
Length = 99
Score = 35.3 bits (82), Expect = 4e-04
Identities = 12/36 (33%), Positives = 15/36 (41%), Gaps = 2/36 (5%)
Query: 36 TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
L+I +V D A+ A G SS L VQ
Sbjct: 63 ELVIRDV-TGEDSASIMVKAINIAGETSSHAFLLVQ 97
>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region
plasiticity, cell adhesion; HET: PG6; 2.50A {Homo
sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A
Length = 331
Score = 36.7 bits (84), Expect = 4e-04
Identities = 10/41 (24%), Positives = 17/41 (41%), Gaps = 1/41 (2%)
Query: 32 FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
F +GT+ + + D+ Y C T + L + VM
Sbjct: 89 FTDGTIRLSRL-ELEDEGVYICEFATFPTGNRESQLNLTVM 128
Score = 33.2 bits (75), Expect = 0.006
Identities = 12/56 (21%), Positives = 19/56 (33%), Gaps = 4/56 (7%)
Query: 17 YTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
T +LP + + + S TY C A G + G +EV +
Sbjct: 268 TTLNGSLP--KGVEAQNRTLFFKGPINY-SLAGTYICEATNPIG-TRSGQVEVNIT 319
Score = 28.6 bits (63), Expect = 0.24
Identities = 7/38 (18%), Positives = 12/38 (31%), Gaps = 2/38 (5%)
Query: 35 GTLIIENVERQSDQATYTCVAKTAQGYSSRG-TLEVQV 71
+ R++ Q + C+ TL VQ
Sbjct: 194 SRYRLVPS-REAHQQSLACIVNYHMDRFKESLTLNVQY 230
>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498;
beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 102
Score = 35.5 bits (82), Expect = 4e-04
Identities = 12/58 (20%), Positives = 23/58 (39%), Gaps = 7/58 (12%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73
+G+ L + K +V G L+++ Q++ Y+C A L+V
Sbjct: 47 DGKKLSSSSKVRVEAVGCTRRLVVQQA-GQAEAGEYSCEAGGQ---QLSFRLQVAGQC 100
>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac
muscle, hypertrophic cardiomyopathy, actin-binding,
cell adhesion, disease mutation; NMR {Homo sapiens}
Length = 95
Score = 35.0 bits (81), Expect = 5e-04
Identities = 12/55 (21%), Positives = 23/55 (41%), Gaps = 7/55 (12%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70
G + + K + G TL + V +DQ +Y +A ++ + L+V
Sbjct: 44 GGSDISASNKYGLATEGTRHTLTVREV-GPADQGSYAVIAGSS---KVKFDLKVI 94
>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit;
immunoglobulin fold, glycoprotein, IGE-binding Pro
immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP:
b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A*
1j88_A* 1j89_A* 1j87_A*
Length = 176
Score = 36.0 bits (83), Expect = 5e-04
Identities = 14/58 (24%), Positives = 20/58 (34%), Gaps = 6/58 (10%)
Query: 15 SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
+Y +G L + N + I N D TY C K Q L + V+
Sbjct: 119 IYYKDGEALKYWYE-----NHNISITNA-TVEDSGTYYCTGKVWQLDYESEPLNITVI 170
Score = 24.9 bits (54), Expect = 5.1
Identities = 8/46 (17%), Positives = 13/46 (28%), Gaps = 8/46 (17%)
Query: 15 SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
++ G N +L I N + D Y C +
Sbjct: 38 KWFHNGSLSEET-------NSSLNIVNA-KFEDSGEYKCQHQQVNE 75
>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C,
C-protein, skeletal muscle fast-isoform, structural
genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 35.4 bits (82), Expect = 5e-04
Identities = 11/62 (17%), Positives = 19/62 (30%), Gaps = 7/62 (11%)
Query: 19 EGRTLPINRKQKVFPNG--TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINE 76
G L +R + + R SD Y + T+ ++V+ E
Sbjct: 61 GGAPLDTSRVHVRTSDFDTVFFVRQAAR-SDSGEYELSVQIENM-KDTATIRIRVV---E 115
Query: 77 KP 78
K
Sbjct: 116 KA 117
>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET,
muscle protein; NMR {Caenorhabditis elegans} SCOP:
b.1.1.4 PDB: 1wiu_A
Length = 93
Score = 35.0 bits (81), Expect = 5e-04
Identities = 9/58 (15%), Positives = 16/58 (27%), Gaps = 5/58 (8%)
Query: 17 YTEGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
+ + V ++ + +R +D Y K G EV V
Sbjct: 37 TVGDSGAALAPELLVDAKSSTTSIFFPSAKR-ADSGNYKLKVKNELG-EDEAIFEVIV 92
>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody,
immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S
3cm9_S 3chn_J 3cm9_J
Length = 585
Score = 36.1 bits (82), Expect = 5e-04
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 35 GTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
+L + V ++D+ Y C K Y + V V
Sbjct: 509 VSLTLNLV-TRADEGWYWCGVKQGHFYGETAAVYVAV 544
Score = 34.2 bits (77), Expect = 0.003
Identities = 10/46 (21%), Positives = 20/46 (43%), Gaps = 2/46 (4%)
Query: 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSG 81
+++I + R SD Y C A S++ ++QV+ +
Sbjct: 186 SVVINQL-RLSDAGQYLCQAGDDSN-SNKKNADLQVLKPEPELVYE 229
Score = 34.2 bits (77), Expect = 0.003
Identities = 9/52 (17%), Positives = 21/52 (40%), Gaps = 1/52 (1%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGLLPK 85
+ +++I + R+ D Y C A + ++ + +NE+ P
Sbjct: 289 SFSVVITGL-RKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPT 339
Score = 31.5 bits (70), Expect = 0.026
Identities = 7/45 (15%), Positives = 16/45 (35%), Gaps = 1/45 (2%)
Query: 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFS 80
T+I+ + D Y C+ + + +++ N K
Sbjct: 407 TVILNQL-TSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPG 450
Score = 26.1 bits (56), Expect = 1.8
Identities = 10/60 (16%), Positives = 16/60 (26%), Gaps = 5/60 (8%)
Query: 2 PPLLLFLIYSYHQSFYTEGR-TLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
+ + + S GR L + F + I + Q D Y C
Sbjct: 44 GGCITLISSEGYVSSKYAGRANLTNFPENGTF---VVNIAQL-SQDDSGRYKCGLGINSR 99
>1gxe_A Myosin binding protein C, cardiac-type; cytoskeleton, muscle, IGI,
thick filament, immunoglobulin domain; NMR {Homo
sapiens} SCOP: b.1.1.4
Length = 139
Score = 35.5 bits (81), Expect = 6e-04
Identities = 10/39 (25%), Positives = 16/39 (41%), Gaps = 2/39 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
+E E+ D+ YT K G + L V+V+
Sbjct: 102 RSIFTVEGAEK-EDEGVYTVTVKNPVG-EDQVNLTVKVI 138
>1he7_A High affinity nerve growth factor receptor; transferase,
TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP:
b.1.1.4 PDB: 1wwa_X 1www_X
Length = 126
Score = 35.3 bits (81), Expect = 6e-04
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 5/48 (10%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSG 81
+G L + + YT +A G +S ++ M + PF
Sbjct: 62 HGCLRLNQP-THVNNGNYTLLAANPFGQASA-SIMAAFM---DNPFEF 104
>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein
1 (isoform 2); hydrolase, immunoglobulin domain,
nucleus, protease; 1.15A {Homo sapiens}
Length = 91
Score = 34.6 bits (80), Expect = 6e-04
Identities = 6/43 (13%), Positives = 13/43 (30%), Gaps = 3/43 (6%)
Query: 33 PNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEVQVMG 73
++ V Q TY C + S + + + +
Sbjct: 48 TKKLYMVPYV-DLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89
>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3;
structural genomics, joint center for struct genomics,
JCSG; HET: MLY MSE; 1.70A {Mus musculus}
Length = 112
Score = 34.7 bits (79), Expect = 0.001
Identities = 11/59 (18%), Positives = 18/59 (30%), Gaps = 3/59 (5%)
Query: 13 HQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG--YSSRGTLEV 69
+ L + + L + NV + + Y CV G YS L +
Sbjct: 54 QDAEMENYAHLRAQGGELMEYTTILRLRNV-EFTSEGXYQCVISNHFGSSYSVXAXLTI 111
>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2;
IG domain, structural protein; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 104
Score = 34.3 bits (79), Expect = 0.001
Identities = 12/48 (25%), Positives = 14/48 (29%), Gaps = 7/48 (14%)
Query: 26 NRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70
K G TL I +D A Y CV L V+
Sbjct: 60 GSKYIFESIGAKRTLTISQC-SLADDAAYQCVVGGE---KCSTELFVK 103
>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein
receptor, immunoglobulin V domain fold, symmetric dimer;
1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B
2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B
1p6a_B
Length = 126
Score = 34.8 bits (80), Expect = 0.001
Identities = 12/39 (30%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRG-TLEVQV 71
+ ++ + N+ + SD TY C K A G +++ L V V
Sbjct: 88 DASINVTNL-QLSDIGTYQCKVKKAPGVANKKIHLVVLV 125
>3o3u_N Maltose-binding periplasmic protein, advanced Gly END
product-specific receptor; RAGE, AGER, scavenger
receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3cjj_A
2l7u_A* 2e5e_A
Length = 581
Score = 35.3 bits (81), Expect = 0.001
Identities = 17/55 (30%), Positives = 26/55 (47%), Gaps = 1/55 (1%)
Query: 24 PINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78
P + +V PNG+L + V Q D+ + C A G ++ V+V I KP
Sbjct: 421 PWDSVARVLPNGSLFLPAVGIQ-DEGIFRCQAMNRNGKETKSNYRVRVYQIPGKP 474
>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor,
adhesion, structural genomics, NEW YORK STR genomics
research consortium, nysgrc; 1.70A {Homo sapiens} PDB:
3rq3_A 3udw_A* 3ucr_A
Length = 117
Score = 34.5 bits (79), Expect = 0.001
Identities = 8/42 (19%), Positives = 19/42 (45%), Gaps = 1/42 (2%)
Query: 32 FPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMG 73
P L ++++ +D Y C+ T + G + ++V+
Sbjct: 68 GPGLGLTLQSL-TVNDTGEYFCIYHTYPDGTYTGRIFLEVLE 108
>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle
isozymes; IG fold, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: b.1.1.4
Length = 114
Score = 34.2 bits (79), Expect = 0.001
Identities = 8/45 (17%), Positives = 16/45 (35%), Gaps = 2/45 (4%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKP 78
L I + YT + + G S + + + V+ + P
Sbjct: 62 GSKLTILAARQ-EHCGCYTLLVENKLG-SRQAQVNLTVVDKPDPP 104
>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion;
2.40A {Homo sapiens}
Length = 145
Score = 34.8 bits (79), Expect = 0.001
Identities = 9/36 (25%), Positives = 17/36 (47%), Gaps = 1/36 (2%)
Query: 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
++ I NV +D+ YTC T +++ + V
Sbjct: 104 SISISNV-ALADEGEYTCSIFTMPVRTAKSLVTVLG 138
>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology,
IGSF, cell SU receptor signalling, glycosylation,
membrane protein; HET: NAG; 2.90A {Homo sapiens}
Length = 118
Score = 34.4 bits (79), Expect = 0.001
Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 2/73 (2%)
Query: 2 PPLLLFLIYSYHQSFYTEGR-TLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG 60
+ + S+ R R N +L + + R D+ YTC+ T
Sbjct: 45 SGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLRMFGL-RVEDEGNYTCLFVTFPQ 103
Query: 61 YSSRGTLEVQVMG 73
S + ++V+
Sbjct: 104 GSRSVDIWLRVLA 116
>3cx2_A Myosin-binding protein C, cardiac-type; protonation states,
actin-binding, cardiomyopathy, cell adhesion, disease
mutation, immunoglobulin domain; 1.30A {Homo sapiens}
PDB: 2v6h_A 2avg_A
Length = 108
Score = 34.2 bits (78), Expect = 0.001
Identities = 8/37 (21%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 35 GTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
L I + + + +Y C T + S L V
Sbjct: 72 FELHITDA-QPAFTGSYRCEVSTKDKFDCSNFNLTVH 107
>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor,
CD32, immunoglobulin superfamily, low responder
polymorphism, cell membrane; HET: NAG; 1.50A {Homo
sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C*
2fcb_A
Length = 170
Score = 34.4 bits (79), Expect = 0.002
Identities = 9/57 (15%), Positives = 17/57 (29%), Gaps = 6/57 (10%)
Query: 15 SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
+F+ G++ + + T I S Y C S + + V
Sbjct: 119 TFFQNGKSQKFSHL-----DPTFSIPQANH-SHSGDYHCTGNIGYTLFSSKPVTITV 169
>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system;
1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E
3csp_A 1py9_A
Length = 139
Score = 34.1 bits (78), Expect = 0.002
Identities = 16/62 (25%), Positives = 24/62 (38%), Gaps = 3/62 (4%)
Query: 10 YSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEV 69
Q+ GRT + L I+NV R SD+ YTC + +E+
Sbjct: 61 QDAEQAPEYRGRTELLKESIGE-GKVALRIQNV-RFSDEGGYTCFFRDHSYQEE-AAVEL 117
Query: 70 QV 71
+V
Sbjct: 118 KV 119
>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C,
C-protein, skeletal muscle fast- isoform, MYBPCF,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 101
Score = 33.5 bits (77), Expect = 0.002
Identities = 9/35 (25%), Positives = 13/35 (37%), Gaps = 4/35 (11%)
Query: 36 TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQ 70
LI +V Q D+ Y + Q L V+
Sbjct: 68 ILIFSDV-VQEDRGRYQVITNGGQ---CEAELIVE 98
>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta
sandwich, immunoglobulin-like, immune system receptor;
1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A
1e4k_C* 1t83_C* 1t89_C* 3ay4_C*
Length = 175
Score = 34.1 bits (78), Expect = 0.003
Identities = 8/57 (14%), Positives = 15/57 (26%), Gaps = 6/57 (10%)
Query: 15 SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
++ G+ N I D +Y C S T+ + +
Sbjct: 122 TYLQNGKDRKYFHH-----NSDFHIPKATL-KDSGSYFCRGLVGSKNVSSETVNITI 172
>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A
{Homo sapiens}
Length = 207
Score = 34.1 bits (78), Expect = 0.003
Identities = 12/54 (22%), Positives = 21/54 (38%), Gaps = 3/54 (5%)
Query: 19 EGRTLPINRKQKVFP-NGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+ R + ++ K TL+I + D Y + K +G SR L +
Sbjct: 154 DEREISVDEKHDFKDGICTLLITEF-SKKDAGIYEVILKDDRGKDKSRLKLVDE 206
Score = 31.4 bits (71), Expect = 0.021
Identities = 7/49 (14%), Positives = 19/49 (38%), Gaps = 6/49 (12%)
Query: 20 GRTLPINRKQKVFPNG-----TLIIENVERQSDQATYTCVAKTAQGYSS 63
+ + K K+ + + +E + + D+ TYT + + +
Sbjct: 41 EKEIFEGPKYKMHIDRNTGIIEMFMEKL-QDEDEGTYTFQLQDGKATNH 88
>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage
capsid decorative protein, interaction with bacteria;
1.95A {Enterobacteria phage RB49}
Length = 304
Score = 34.0 bits (77), Expect = 0.003
Identities = 14/39 (35%), Positives = 19/39 (48%), Gaps = 2/39 (5%)
Query: 31 VFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEV 69
+ P+G L E+ D A + CVAK Q T+EV
Sbjct: 254 ITPDGHLFKESATY-DDTAKFWCVAKLYQQIEDE-TVEV 290
Score = 28.6 bits (63), Expect = 0.25
Identities = 4/30 (13%), Positives = 10/30 (33%), Gaps = 1/30 (3%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSS 63
TL + + + +Y + +S
Sbjct: 51 TATLTVADA-TSENAGSYKVTVQDTDTMTS 79
Score = 27.9 bits (61), Expect = 0.51
Identities = 3/39 (7%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEVQV 71
+ I+ YT ++ + ++ +
Sbjct: 144 TQDITIQEF-TADKNGVYTVKVWGESEDSAASASTKIML 181
>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics,
NPPSFA, national project on protein structural and
functional analyses; NMR {Homo sapiens}
Length = 104
Score = 33.1 bits (76), Expect = 0.003
Identities = 13/66 (19%), Positives = 24/66 (36%), Gaps = 10/66 (15%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75
+G+ + + V +G LI+ + D + C + S+ + VQ
Sbjct: 46 DGQKVEESELLVVKMDGRKHRLILPEA-KVQDSGEFECRTEGV---SAFFGVTVQD---P 98
Query: 76 EKPFSG 81
P SG
Sbjct: 99 SGPSSG 104
>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo
sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B
Length = 171
Score = 33.7 bits (77), Expect = 0.003
Identities = 11/46 (23%), Positives = 18/46 (39%), Gaps = 2/46 (4%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
NR +G+L I N+ SD+ Y + + + L V
Sbjct: 51 NRVYLDTVSGSLTIYNL-TSSDEDEYEMESPNITD-TMKFFLYVLE 94
>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA
national project on protein structural and functional
analyses; NMR {Homo sapiens}
Length = 103
Score = 32.7 bits (75), Expect = 0.004
Identities = 13/66 (19%), Positives = 26/66 (39%), Gaps = 9/66 (13%)
Query: 19 EGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGIN 75
+ + + ++K V G L+I D YTC + ++ ++ +E +
Sbjct: 44 DRKAIRKSQKYDVVCEGTMAMLVIRGAS-LKDAGEYTCEVEASKS-TASLHVEEKA---- 97
Query: 76 EKPFSG 81
P SG
Sbjct: 98 SGPSSG 103
>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation
marker blast-1, BCM1 surface antigen, leukocyte antigen
MEM-102, TCT.1; NMR {Homo sapiens}
Length = 121
Score = 33.0 bits (75), Expect = 0.005
Identities = 13/54 (24%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPF 79
R + +G L I V ++ D +TY G +++QV+ KP
Sbjct: 64 GRVRLDPQSGALYISKV-QKEDNSTYIMRVLKKTGNEQEWKIKLQVLDPVPKPV 116
>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex,
costimulation, glycoprotein, immunoglo domain, membrane,
transmembrane, receptor; 1.60A {Mus musculus} PDB:
3bp5_B 3rnq_B 3bov_A 3rnk_B
Length = 202
Score = 33.5 bits (76), Expect = 0.005
Identities = 10/66 (15%), Positives = 21/66 (31%), Gaps = 3/66 (4%)
Query: 13 HQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
+ + R + +Q I +V + D Y C+ + + L V+V
Sbjct: 46 NDTSLQSERAT-LLEEQLPLGKALFHIPSV-QVRDSGQYRCLVICGAAWDYK-YLTVKVK 102
Query: 73 GINEKP 78
+
Sbjct: 103 ASYMRI 108
Score = 25.0 bits (54), Expect = 4.0
Identities = 6/41 (14%), Positives = 14/41 (34%), Gaps = 2/41 (4%)
Query: 22 TLPINRKQKVFPNGTLIIEN--VERQSDQATYTCVAKTAQG 60
++P N P G + + + ++C+ A
Sbjct: 141 SVPANTSHIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHM 181
>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain,
structural genomics, NPPSFA; NMR {Homo sapiens} SCOP:
b.1.1.4
Length = 126
Score = 32.7 bits (74), Expect = 0.005
Identities = 7/39 (17%), Positives = 11/39 (28%), Gaps = 2/39 (5%)
Query: 33 PNGTLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEVQ 70
+ I + + Y C + S LEV
Sbjct: 73 YTFEMQIIKA-KDNFAGNYRCEVTYKDKFDSCSFDLEVH 110
>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin
domain, fibronectin type III repeat, CE adhesion; 1.80A
{Homo sapiens}
Length = 215
Score = 32.9 bits (75), Expect = 0.006
Identities = 10/58 (17%), Positives = 18/58 (31%), Gaps = 5/58 (8%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGLLPKINKETS 91
L + +D Y C A G S + + P S + ++ +S
Sbjct: 75 ASYLEVTPDSE-NDFGNYNCTAVNRIGQESL-EFILVQA---DTPSSPSIDQVEPYSS 127
>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody,
immune system; HET: NAG BMA MAN FUC; 2.20A {Homo
sapiens} PDB: 3sgk_C*
Length = 204
Score = 32.9 bits (75), Expect = 0.007
Identities = 8/57 (14%), Positives = 16/57 (28%), Gaps = 6/57 (10%)
Query: 15 SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
++ G+ N I D +Y C S T+++ +
Sbjct: 122 TYLQNGKGRKYFH-----HNSDFYIPKATL-KDSGSYFCRGLVGSKNVSSETVQITI 172
>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion
molecule, virus entry receptor, STR genomics,
PSI-biology; 1.30A {Homo sapiens}
Length = 128
Score = 32.3 bits (73), Expect = 0.009
Identities = 11/38 (28%), Positives = 17/38 (44%), Gaps = 1/38 (2%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
+ TL + + D+ YTC T S RG ++V
Sbjct: 92 DATLALHGL-TVEDEGNYTCEFATFPKGSVRGMTWLRV 128
>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily,
immune system; HET: NAG; 3.00A {Homo sapiens} SCOP:
b.1.1.1 b.1.1.3 PDB: 1i8l_A*
Length = 201
Score = 32.3 bits (73), Expect = 0.013
Identities = 14/60 (23%), Positives = 26/60 (43%), Gaps = 3/60 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGLLPKINKETSPS 93
N +++I + R SD+ TY CV + + + +V + F P I+ P+
Sbjct: 64 NLSIVILAL-RPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFP--TPSISDFEIPT 120
>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding
domain of CD48, immune system; HET: NAG; 2.60A {Rattus
norvegicus}
Length = 180
Score = 31.8 bits (72), Expect = 0.017
Identities = 13/47 (27%), Positives = 18/47 (38%), Gaps = 1/47 (2%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
+R NG L I NV + D+ Y + T+EV M
Sbjct: 60 DRVDLDKTNGALRIYNV-SKEDRGDYYMRMLHETEDQWKITMEVYEM 105
>2qsq_A Carcinoembryonic antigen-related cell adhesion MO; glycoprotein,
GPI-anchor, immunoglobulin DOMA lipoprotein, membrane;
1.95A {Homo sapiens} PDB: 2qst_A 2ver_N* 2gk2_A
Length = 111
Score = 30.7 bits (69), Expect = 0.025
Identities = 11/41 (26%), Positives = 22/41 (53%), Gaps = 1/41 (2%)
Query: 31 VFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
++PN +L+I+N+ Q+D YT + + T + +V
Sbjct: 68 IYPNASLLIQNII-QNDAGFYTLHVIKSDLVNEEATGQFRV 107
>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane,
phosphorylation, immunoglobulin fold, signal; 1.90A
{Rattus norvegicus} SCOP: b.1.1.1
Length = 124
Score = 30.7 bits (69), Expect = 0.027
Identities = 10/40 (25%), Positives = 19/40 (47%), Gaps = 2/40 (5%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSR-GTLEVQVM 72
+G+++I N+ SD T+TC K + + + V
Sbjct: 80 DGSIVIHNL-DYSDNGTFTCDVKNPPDIVGKTSQVTLYVF 118
>3c6l_A TCR 2W20 alpha chain; TCR-PMHC complex; 3.40A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2
Length = 185
Score = 31.0 bits (70), Expect = 0.035
Identities = 19/67 (28%), Positives = 28/67 (41%), Gaps = 4/67 (5%)
Query: 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYS 62
P LL I T+ N+++K F +L I + + D ATY C A + +
Sbjct: 43 PALLIAIRPVSNKKEDGRFTIFFNKREKKF---SLHIADSQ-PGDSATYFCAASDNRIFF 98
Query: 63 SRGTLEV 69
GT V
Sbjct: 99 GDGTQLV 105
>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33;
2.40A {Caenorhabditis elegans} PDB: 1koa_A
Length = 573
Score = 30.6 bits (69), Expect = 0.049
Identities = 16/57 (28%), Positives = 22/57 (38%), Gaps = 5/57 (8%)
Query: 17 YTEGRTLPINRKQKVFPNG---TLIIENVERQSDQATYTCVAKTAQGY-SSRGTLEV 69
+ + R L + K NG L I V+ D+ YT AK + G L V
Sbjct: 517 HKDDRELKQSVKYMKRYNGNDYGLTINRVKG-DDKGEYTVRAKNSYGTKEEIVFLNV 572
>1olz_A Semaphorin 4D; developmental protein, CD100, beta-propeller, PSI
domain, IG-like domain, extracellular receptor,
neurogenesis; 2.0A {Homo sapiens} SCOP: b.1.1.4
b.69.12.1 g.16.2.1 PDB: 3ol2_A*
Length = 663
Score = 30.5 bits (67), Expect = 0.061
Identities = 14/59 (23%), Positives = 24/59 (40%), Gaps = 7/59 (11%)
Query: 19 EGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVA------KTAQGYSSRGTLEVQV 71
G + K + L+I N+ + D Y C++ KT ++ LEV+V
Sbjct: 570 NGVLKAESPKYGLMGRKNLLIFNL-SEGDSGVYQCLSEERVKNKTVFQVVAKHVLEVKV 627
>3pv7_A B7-H6, IG-like domain-containing protein
DKFZP686O24166/DKFZP686I21167; NK cell receptor,
receptor-ligand complex, immune system; HET: NAG; 2.00A
{Homo sapiens} PDB: 3pv6_A*
Length = 248
Score = 30.4 bits (68), Expect = 0.062
Identities = 11/70 (15%), Positives = 29/70 (41%), Gaps = 4/70 (5%)
Query: 2 PPLLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY 61
+ +F + HQ + G + R + + +L + ++ + Y C
Sbjct: 51 KEVKVFEFFGDHQEAFRPGAIVSPWRLKSG--DASLRLPGIQL-EEAGEYRCEVVV-TPL 106
Query: 62 SSRGTLEVQV 71
++GT++++V
Sbjct: 107 KAQGTVQLEV 116
>1a64_A CD2; domain swapping, hinge loop, oligomer evolution; 2.00A
{Rattus norvegicus} SCOP: b.1.1.1 PDB: 1a7b_A 1cdc_B
1a6p_A 1t6w_A
Length = 97
Score = 29.2 bits (65), Expect = 0.074
Identities = 13/42 (30%), Positives = 19/42 (45%), Gaps = 6/42 (14%)
Query: 25 INRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGT 66
+ ++ NG L I+N+ R D TY YS+ GT
Sbjct: 49 KSGAFEILANGDLKIKNLTR-DDSGTYNVTV-----YSTNGT 84
>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system;
3.00A {Homo sapiens}
Length = 193
Score = 29.6 bits (66), Expect = 0.096
Identities = 4/28 (14%), Positives = 12/28 (42%), Gaps = 1/28 (3%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTC 53
++ + +L + N+ + D +Y
Sbjct: 61 GKRLNFTQSYSLQLSNL-KMEDTGSYRA 87
Score = 27.3 bits (60), Expect = 0.71
Identities = 7/30 (23%), Positives = 12/30 (40%)
Query: 27 RKQKVFPNGTLIIENVERQSDQATYTCVAK 56
+ L + R S + YTC+A+
Sbjct: 147 LGNTLSSQPNLTVSWDPRISSEQDYTCIAE 176
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 29.4 bits (65), Expect = 0.12
Identities = 13/91 (14%), Positives = 29/91 (31%), Gaps = 28/91 (30%)
Query: 28 KQKVFPNGTLIIENVE------------------R--------QSDQATYTCVAKTAQGY 61
K K + N L++ NV+ R + T+ + +
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 62 SSRGTLEVQVMGINEKPFSGLLPKINKETSP 92
+ + + ++ +P LP+ T+P
Sbjct: 299 TPDEVKSLLLKYLDCRPQD--LPREVLTTNP 327
>2ol3_A BM3.3 T-cell receptor alpha-chain; T cell receptor, class I MHC,
H-2KBM8, TCR-PMHC complex, IMM system; HET: NAG; 2.90A
{Mus musculus} SCOP: b.1.1.1
Length = 142
Score = 29.2 bits (66), Expect = 0.12
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 3 PLLLFLIYSYHQSFYTEGR-TLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY 61
+ L SY + T G +L + + LII + D A Y C + G
Sbjct: 44 IVFLIRQDSYKKENATVGHYSLNFQKPKSSIG---LIITATQ-IEDSAVYFCAMRGDYGG 99
Query: 62 SS 63
S
Sbjct: 100 SG 101
>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB,
TCR-PMHC complex, immune system; 2.50A {Mus musculus}
SCOP: b.1.1.1 PDB: 1nam_A*
Length = 116
Score = 28.4 bits (64), Expect = 0.18
Identities = 15/62 (24%), Positives = 22/62 (35%), Gaps = 5/62 (8%)
Query: 3 PLLLFLIYSYHQSFYTEGR-TLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY 61
+ L SY + T G +L + + LII + D A Y C + G
Sbjct: 44 IVFLIRQDSYKKENATVGHYSLNFQKPKSSIG---LIITATQ-IEDSAVYFCAMRGDYGG 99
Query: 62 SS 63
S
Sbjct: 100 SG 101
>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon,
CD3-delta, UCHT1-SCFV, immunoglobulin fold,
antibody-antigen complex; 1.90A {Homo sapiens} SCOP:
b.1.1.4
Length = 105
Score = 28.2 bits (62), Expect = 0.20
Identities = 5/50 (10%), Positives = 15/50 (30%), Gaps = 2/50 (4%)
Query: 20 GRTLPINRKQKVFPN--GTLIIENVERQSDQATYTCVAKTAQGYSSRGTL 67
+ + + K + L ++ Y C + ++ + L
Sbjct: 42 DKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYL 91
>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune
system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A
Length = 110
Score = 28.3 bits (63), Expect = 0.22
Identities = 7/47 (14%), Positives = 16/47 (34%), Gaps = 1/47 (2%)
Query: 26 NRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVM 72
R + TL + N+ + D+ Y C+ + ++
Sbjct: 60 GRTSFDSDSWTLRLHNL-QIKDKGLYQCIIHHKKPTGMIRIHQMNSE 105
>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune
system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A
4f8q_A
Length = 226
Score = 28.5 bits (63), Expect = 0.25
Identities = 12/76 (15%), Positives = 23/76 (30%), Gaps = 7/76 (9%)
Query: 8 LIYSYHQSFYTEGRTLPINRKQKVFP-----NGTLIIENVERQSDQATYTCVAKTAQGYS 62
+Y+ + R + L I NV SD Y C + +
Sbjct: 51 NVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHNV-TASDSGKYLCYFQD-GDFY 108
Query: 63 SRGTLEVQVMGINEKP 78
+ +E++V +
Sbjct: 109 EKALVELKVAALGSDL 124
>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human
coxsackievirus A21, cryo-electron
microscopy,virus-receptor complex, icosahedral virus;
HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3
b.1.1.4 b.1.1.4 b.1.1.4
Length = 450
Score = 28.7 bits (63), Expect = 0.26
Identities = 9/29 (31%), Positives = 15/29 (51%), Gaps = 1/29 (3%)
Query: 44 RQSDQATYTCVAKTAQGYSSR-GTLEVQV 71
+ + TY C A++ QG +R T+ V
Sbjct: 421 TRDLEGTYLCRARSTQGEVTREVTVNVLS 449
Score = 25.6 bits (55), Expect = 2.5
Identities = 6/42 (14%), Positives = 11/42 (26%), Gaps = 1/42 (2%)
Query: 15 SFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAK 56
+ L T + V R A ++C +
Sbjct: 122 VLLRGEKELKREPAVGEPAEVTTTV-LVRRDHHGANFSCRTE 162
Score = 25.2 bits (54), Expect = 4.6
Identities = 6/44 (13%), Positives = 16/44 (36%), Gaps = 2/44 (4%)
Query: 29 QKVFPNGTLIIENVERQSDQATYTCVAK-TAQGYSSRGTLEVQV 71
Q + P L++ + + +++C A G ++
Sbjct: 321 QPLGPRAQLLL-KATPEDNGRSFSCSATLEVAGQLIHKNQTREL 363
>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural
plasticity, cell-surface dimerizatio adhesion; HET: NAG
FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4
PDB: 1p53_A*
Length = 265
Score = 27.7 bits (61), Expect = 0.47
Identities = 12/43 (27%), Positives = 20/43 (46%), Gaps = 5/43 (11%)
Query: 34 NGTLIIENVERQS----DQATYTCVAKTAQGYSSR-GTLEVQV 71
+GT + E + + TY C A++ QG +R T+ V
Sbjct: 222 DGTFPLPIGESVTVTRDLEGTYLCRARSTQGEVTREVTVNVLS 264
Score = 25.0 bits (54), Expect = 3.8
Identities = 6/49 (12%), Positives = 17/49 (34%), Gaps = 3/49 (6%)
Query: 27 RKQKVFPNGTLIIENVERQSDQATYTCVAK---TAQGYSSRGTLEVQVM 72
+ ++ + + +++C A Q T E++V+
Sbjct: 133 VPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVL 181
Score = 25.0 bits (54), Expect = 4.1
Identities = 5/62 (8%), Positives = 11/62 (17%), Gaps = 2/62 (3%)
Query: 12 YHQSFYTEGRTL-PINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQG-YSSRGTLEV 69
+ L P + + TC + T+ +
Sbjct: 36 AQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTI 95
Query: 70 QV 71
Sbjct: 96 YS 97
>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor,
IG-like domain, immune system; 1.00A {Mus musculus} PDB:
2icc_A 2ice_S* 2icf_S*
Length = 119
Score = 26.8 bits (59), Expect = 0.80
Identities = 9/42 (21%), Positives = 18/42 (42%), Gaps = 5/42 (11%)
Query: 34 NGTLIIENVERQSDQATYTC-VAKTAQGYSS---RGTLEVQV 71
+ +L I + + D+ YTC V + +E++V
Sbjct: 77 DVSLQINTL-QMDDRNHYTCEVTWQTPDGNQVIRDKIIELRV 117
>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein
complex, hydrolase/immune system complex; 1.45A
{Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N
Length = 113
Score = 26.6 bits (59), Expect = 0.98
Identities = 15/54 (27%), Positives = 20/54 (37%), Gaps = 5/54 (9%)
Query: 14 QSFYTEGR-TLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGYSSRGT 66
+S GR +N K F +L I ++ D TY C A GY
Sbjct: 47 ESISKGGRYVETVNSGSKSF---SLRINDL-TVEDGGTYRCGLGVAGGYCDYAL 96
>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I
MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP:
b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*
Length = 194
Score = 26.9 bits (59), Expect = 0.99
Identities = 12/59 (20%), Positives = 22/59 (37%), Gaps = 4/59 (6%)
Query: 3 PLLLFLIYSYHQSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKTAQGY 61
P LL ++ ++ +G +++ F L + + SD A Y C A
Sbjct: 44 PKLLLKSFTDNKRPEHQGFHATLHKSSSSF---HLQKSSA-QLSDSALYYCALFLASSS 98
>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase,
glycoprotein, receptor protei tyrosine phosphatase, cell
adhesion; HET: NAG; 3.10A {Homo sapiens}
Length = 731
Score = 26.3 bits (57), Expect = 1.9
Identities = 8/38 (21%), Positives = 14/38 (36%), Gaps = 1/38 (2%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQV 71
+ + N + D Y C+ +T G E+ V
Sbjct: 222 IASFNVVNTTK-RDAGKYRCMIRTEGGVGISNYAELVV 258
>1yrz_A Xylan beta-1,4-xylosidase; structural genomics, nysgxrc target
T1997, PSI, structure initiative; 2.00A {Bacillus
halodurans} SCOP: b.29.1.23 b.67.2.1
Length = 528
Score = 26.0 bits (57), Expect = 2.1
Identities = 8/49 (16%), Positives = 21/49 (42%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQGYSSRGTLEVQVMGINEKPFSGL 82
G L + +E + + + VA+ Q + +++ + + +GL
Sbjct: 354 PGHLRLRGMESLTSVHSQSLVARRQQSFHCEVETKLEYQPESFQHMAGL 402
>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast
MYBP-C, C-protein, skeletal muscle fast isoform,
structural genomics, NPPSFA; NMR {Homo sapiens}
Length = 118
Score = 24.8 bits (53), Expect = 4.5
Identities = 9/37 (24%), Positives = 13/37 (35%), Gaps = 2/37 (5%)
Query: 36 TLIIENVERQSDQATYTCVAKTAQGYSSRG-TLEVQV 71
L I V D+ Y K S G ++V+
Sbjct: 81 ELHIGKVVL-GDRGYYRLEVKAKDTCDSCGFNIDVEA 116
>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet,
C2-SET immunoglobulin superfamily, H-bonded G strand
PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4
b.1.1.4 PDB: 1xmw_A
Length = 186
Score = 24.4 bits (52), Expect = 6.0
Identities = 4/27 (14%), Positives = 10/27 (37%)
Query: 34 NGTLIIENVERQSDQATYTCVAKTAQG 60
+ L++++ D Y C +
Sbjct: 43 DKHLVLQDFSEVEDSGYYVCYTPASNK 69
>3l5h_A Interleukin-6 receptor subunit beta; IG-like, FNIII, cell membrane,
disulfide bond, glycoprotein, immunoglobulin domain,
membrane, phosphoprotein; HET: NAG NDG BMA FUC; 3.60A
{Homo sapiens}
Length = 589
Score = 24.6 bits (53), Expect = 6.4
Identities = 11/66 (16%), Positives = 22/66 (33%), Gaps = 4/66 (6%)
Query: 15 SFYTEGRTLPINRKQKVFPNG-TLIIENVERQSDQATYTCVAKT-AQGYSSRGTLEVQVM 72
+ T T+P + + ++ ++ S TC T Q + + +
Sbjct: 43 VWKTNHFTIPKEQYTIINRTASSVTFTDI--ASLNIQLTCNILTFGQLEQNVYGITIISG 100
Query: 73 GINEKP 78
EKP
Sbjct: 101 LPPEKP 106
>3kbq_A Protein TA0487; structural genomics, CINA, protein structure
initiative, MCS midwest center for structural genomics,
unknown function; 2.00A {Thermoplasma acidophilum}
Length = 172
Score = 24.4 bits (54), Expect = 6.6
Identities = 7/28 (25%), Positives = 9/28 (32%)
Query: 14 QSFYTEGRTLPINRKQKVFPNGTLIIEN 41
+ Y + P K P IEN
Sbjct: 103 KKKYGQADLTPQRLKMAKIPPSCRPIEN 130
>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET:
NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G*
3b9k_A* 2atp_A* 2arj_R
Length = 128
Score = 24.1 bits (52), Expect = 7.5
Identities = 3/20 (15%), Positives = 8/20 (40%), Gaps = 1/20 (5%)
Query: 36 TLIIENVERQSDQATYTCVA 55
L + ++ ++ Y C
Sbjct: 86 VLTLNKFSKE-NEGYYFCSV 104
>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin
superfamily, integrin-binding, cell adhesion protein;
1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A
1vsc_A
Length = 202
Score = 24.3 bits (52), Expect = 7.7
Identities = 8/66 (12%), Positives = 17/66 (25%), Gaps = 9/66 (13%)
Query: 14 QSFYTEGRTLPINRKQKVFPNGTLIIENVERQSDQATYTCVAKT--------AQGYSSRG 65
++ +RK + + V + C AK +
Sbjct: 133 HLMKSQEFLEDADRKSLETKSLEVTFTPV-IEDIGKVLVCRAKLHIDEMDSVPTVRQAVK 191
Query: 66 TLEVQV 71
L+V +
Sbjct: 192 ELQVYI 197
>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor,
two-domain structure, V-SET, C2-SET, IG-like domain,
6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens}
PDB: 2zg3_A* 2zg2_A
Length = 214
Score = 24.4 bits (52), Expect = 7.8
Identities = 5/41 (12%), Positives = 13/41 (31%), Gaps = 1/41 (2%)
Query: 32 FPNGTLIIENVERQSDQATYTCVAK-TAQGYSSRGTLEVQV 71
+ + + TC K ++ T+++ V
Sbjct: 173 TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.316 0.133 0.379
Gapped
Lambda K H
0.267 0.0526 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,269,602
Number of extensions: 58585
Number of successful extensions: 515
Number of sequences better than 10.0: 1
Number of HSP's gapped: 419
Number of HSP's successfully gapped: 325
Length of query: 94
Length of database: 6,701,793
Length adjustment: 61
Effective length of query: 33
Effective length of database: 4,998,612
Effective search space: 164954196
Effective search space used: 164954196
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 51 (23.9 bits)