BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14474
(550 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2RFA|A Chain A, Crystal Structure Of The Mouse Trpv6 Ankyrin Repeat Domain
Length = 232
Score = 103 bits (256), Expect = 3e-22, Method: Compositional matrix adjust.
Identities = 70/219 (31%), Positives = 108/219 (49%), Gaps = 23/219 (10%)
Query: 105 LDPLSKWRDHEACWQMQYRGSLGETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGE 164
+ LSK E C ++ RG++GET LH+ + D A L++ P L + + E
Sbjct: 16 VQALSKLLKFEGC-EVHQRGAMGETALHIAALYDN---LEAAMVLMEAAPELVFEPMTSE 71
Query: 165 EYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAY 224
Y G +ALH+A+ N LV L+ GA+V+ RA GS F H L Y
Sbjct: 72 LYEGQTALHIAVINQNVNLVRALLARGASVSARATGSVF------------HYRPHNLIY 119
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDK----LDMFGYALR 280
GE+PLS+AAC +E + LLI+ GA A+DS GN +LH++++ M+ L
Sbjct: 120 YGEHPLSFAACVGSEEIVRLLIEHGADIRAQDSLGNTVLHILILQPNKTFACQMYNLLLS 179
Query: 281 H---PKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
+ + + NN G TP L+ G +F+ +++
Sbjct: 180 YDGGDHLKSLELVPNNQGLTPFKLAGVEGNIVMFQHLMQ 218
>pdb|3JXI|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|C Chain C, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXI|D Chain D, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|A Chain A, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
pdb|3JXJ|B Chain B, Crystal Structure Of The Chicken Trpv4 Ankyrin Repeat
Domain
Length = 260
Score = 77.0 bits (188), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 55/166 (33%), Positives = 81/166 (48%), Gaps = 27/166 (16%)
Query: 166 YLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYL 225
Y G +ALH+AI V L+E GA+V +A G FF P+D+ G Y
Sbjct: 91 YRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRFFQPKDEG-----------GYFYF 139
Query: 226 GEYPLSWAACCSNESVYNLLIDSG---AIPDAKDSFGNMILHMVVV-------NDKLDMF 275
GE PLS AAC + + + L ++G A +DS GN +LH +V N K
Sbjct: 140 GELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTK 199
Query: 276 GYALRHPKT----PASN--GILNNDGFTPLTLSCQLGRADVFREML 315
Y L K P +N +LNNDG +PL ++ + G+ +F+ ++
Sbjct: 200 MYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHII 245
>pdb|4DX1|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX1|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|A Chain A, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
pdb|4DX2|B Chain B, Crystal Structure Of The Human Trpv4 Ankyrin Repeat Domain
Length = 259
Score = 74.7 bits (182), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 55/167 (32%), Positives = 79/167 (47%), Gaps = 27/167 (16%)
Query: 166 YLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYL 225
Y G +ALH+AI V L+ GA+V +A G FF P+D+ G Y
Sbjct: 89 YRGQTALHIAIERRCKHYVELLVAQGADVHAQARGRFFQPKDEG-----------GYFYF 137
Query: 226 GEYPLSWAACCSNESVYNLLIDS---GAIPDAKDSFGNMILHMVVV-------NDKLDMF 275
GE PLS AAC + + N L ++ A +DS GN +LH +V N K
Sbjct: 138 GELPLSLAACTNQPHIVNYLTENPHKKADMRRQDSRGNTVLHALVAIADNTRENTKFVTK 197
Query: 276 GYALRHPKT----PASN--GILNNDGFTPLTLSCQLGRADVFREMLE 316
Y L K P SN +LNNDG +PL ++ + G+ +F+ ++
Sbjct: 198 MYDLLLLKCARLFPDSNLEAVLNNDGLSPLMMAAKTGKIGIFQHIIR 244
>pdb|2ETA|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETA|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of The
Trpv2
pdb|2ETB|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 256
Score = 73.9 bits (180), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 80/170 (47%), Gaps = 30/170 (17%)
Query: 164 EEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLA 223
E Y G SALH+AI + + V L+E GA+V RA G FF ++G
Sbjct: 86 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF-------------QKHQGTC 132
Query: 224 -YLGEYPLSWAACCSNESVYNLLIDSGAIP---DAKDSFGNMILHMVVV-------NDKL 272
Y GE PLS AAC V L+++ P +A DS GN +LH +V+ N L
Sbjct: 133 FYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSAL 192
Query: 273 DMFGY------ALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
+ Y R T I N+ G TPL L+ + G+ ++FR +L+
Sbjct: 193 VIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 242
>pdb|2ETC|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
pdb|2ETC|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv2
Length = 274
Score = 73.6 bits (179), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 57/170 (33%), Positives = 80/170 (47%), Gaps = 30/170 (17%)
Query: 164 EEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLA 223
E Y G SALH+AI + + V L+E GA+V RA G FF ++G
Sbjct: 99 EFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFF-------------QKHQGTC 145
Query: 224 -YLGEYPLSWAACCSNESVYNLLIDSGAIP---DAKDSFGNMILHMVVV-------NDKL 272
Y GE PLS AAC V L+++ P +A DS GN +LH +V+ N L
Sbjct: 146 FYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVMIADNSPENSAL 205
Query: 273 DMFGY------ALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
+ Y R T I N+ G TPL L+ + G+ ++FR +L+
Sbjct: 206 VIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHILQ 255
>pdb|2NYJ|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
pdb|2PNN|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Trpv1
Length = 273
Score = 70.5 bits (171), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 60/177 (33%), Positives = 77/177 (43%), Gaps = 34/177 (19%)
Query: 166 YLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYL 225
Y G +ALH+AI N LV L+E GA+V A G FF + RP Y
Sbjct: 99 YKGQTALHIAIERRNXTLVTLLVENGADVQAAANGDFF---KKTKGRPG--------FYF 147
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIP---DAKDSFGNMILHMVVV-------NDKLDMF 275
GE PLS AAC + ++ L+ + P A+DS GN +LH +V N K
Sbjct: 148 GELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVEVADNTVDNTKFVTS 207
Query: 276 GY-------ALRHPKTPASNGILNNDGFTPLTLSCQLGRADVF-----REMLELSCK 320
Y A HP T I N G TPL L+ G+ V RE+ E C+
Sbjct: 208 XYNEILILGAKLHP-TLKLEEITNRKGLTPLALAASSGKIGVLAYILQREIHEPECR 263
>pdb|2F37|A Chain A, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
pdb|2F37|B Chain B, Crystal Structure Of The Ankyrin Repeat Domain Of Human
Trpv2
Length = 251
Score = 66.2 bits (160), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 58/173 (33%), Positives = 78/173 (45%), Gaps = 31/173 (17%)
Query: 166 YLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYL 225
Y G SALH+AI + + V L+E GANV RA G FF + Q T Y
Sbjct: 93 YRGHSALHIAIEKRSLQCVKLLVENGANVHARACGRFF-QKGQGT-----------CFYF 140
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIP---DAKDSFGNMILHMVV------------VND 270
GE PLS AAC V + L+++ P A DS GN +LH +V V
Sbjct: 141 GELPLSLAACTKQWDVVSYLLENPHQPASLQATDSQGNTVLHALVXISDNSAENIALVTS 200
Query: 271 KLD-MFGYALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLELSCKEF 322
D + R T I N TPL L+ + G+ ++FR +L+ +EF
Sbjct: 201 XYDGLLQAGARLCPTVQLEDIRNLQDLTPLKLAAKEGKIEIFRHILQ---REF 250
>pdb|2DVW|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|A Chain A, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
pdb|2DWZ|C Chain C, Structure Of The Oncoprotein Gankyrin In Complex With S6
Atpase Of The 26s Proteasome
Length = 231
Score = 48.5 bits (114), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 44/204 (21%)
Query: 120 MQYRGSLGETLLHVLIICDTKLHTRL---ARTLLK--CFPRLSQDV---------VEGEE 165
+ Y G L E L I+ D L TR +RT L C ++ V V ++
Sbjct: 13 LAYSGKLDE--LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 70
Query: 166 YLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYL 225
G S LH+A + +E+V L+ GA+V +
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLVKGAHVN-------------------------AVNQN 105
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL +AA + + +L++ GA PDAKD + +H L M L +
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK--- 162
Query: 286 ASNGILNNDGFTPLTLSCQLGRAD 309
AS I + +G TPL L+C R +
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVE 186
>pdb|4GMR|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266.
pdb|4GMR|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or266
Length = 169
Score = 48.1 bits (113), Expect = 1e-05, Method: Composition-based stats.
Identities = 40/145 (27%), Positives = 64/145 (44%), Gaps = 28/145 (19%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA + E+V L+ GA+ ++ +D G+
Sbjct: 37 GKTPLHLAAENGHKEVVKLLLSQGADPN------------------AKDSD-------GK 71
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA ++ V LL+ GA P+AKDS G LH+ N ++ L P +
Sbjct: 72 TPLHLAAENGHKEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNT 131
Query: 288 NGILNNDGFTPLTLSCQLGRADVFR 312
+ ++DG TPL L+ + G +V +
Sbjct: 132 S---DSDGRTPLDLAREHGNEEVVK 153
Score = 47.8 bits (112), Expect = 1e-05, Method: Composition-based stats.
Identities = 39/137 (28%), Positives = 60/137 (43%), Gaps = 28/137 (20%)
Query: 179 ANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSN 238
N + V DL+E GA+V + +D G+ PL AA +
Sbjct: 15 GNKDRVKDLLENGADVN------------------ASDSD-------GKTPLHLAAENGH 49
Query: 239 ESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTP 298
+ V LL+ GA P+AKDS G LH+ N ++ L P + ++DG TP
Sbjct: 50 KEVVKLLLSQGADPNAKDSDGKTPLHLAAENGHKEVVKLLLSQGADPNAK---DSDGKTP 106
Query: 299 LTLSCQLGRADVFREML 315
L L+ + G +V + +L
Sbjct: 107 LHLAAENGHKEVVKLLL 123
>pdb|3AJI|A Chain A, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
pdb|3AJI|C Chain C, Structure Of Gankyrin-S6atpase Photo-Cross-Linked
Site-Specifically, And Incoporated By Genetic Code
Expansion
Length = 231
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 81/204 (39%), Gaps = 44/204 (21%)
Query: 120 MQYRGSLGETLLHVLIICDTKLHTRL---ARTLLK--CFPRLSQDV---------VEGEE 165
+ Y G L E L I+ D L TR +RT L C ++ V V ++
Sbjct: 13 LAYSGKLDE--LKERILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 70
Query: 166 YLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYL 225
G S LH+A + +E+V L+ GA+V +
Sbjct: 71 DAGWSPLHIAASAGXDEIVKALLVKGAHVN-------------------------AVNQN 105
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL +AA + + +L++ GA PDAKD + +H L M L +
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNLKMVHILLFYK--- 162
Query: 286 ASNGILNNDGFTPLTLSCQLGRAD 309
AS I + +G TPL L+C R +
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVE 186
>pdb|1UOH|A Chain A, Human Gankyrin
pdb|1TR4|A Chain A, Solution Structure Of Human Oncogenic Protein Gankyrin
Length = 226
Score = 48.1 bits (113), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 80/204 (39%), Gaps = 44/204 (21%)
Query: 120 MQYRGSLGETLLHVLIICDTKLHTRL---ARTLLK--CFPRLSQDV---------VEGEE 165
+ Y G L E L I+ D L TR +RT L C ++ V V ++
Sbjct: 13 LAYSGKLEE--LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 70
Query: 166 YLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYL 225
G S LH+A + +E+V L+ GA V +
Sbjct: 71 DAGWSPLHIAASAGRDEIVKALLGKGAQVN-------------------------AVNQN 105
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL +AA + + +L++ GA PDAKD + +H L M L +
Sbjct: 106 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK--- 162
Query: 286 ASNGILNNDGFTPLTLSCQLGRAD 309
AS I + +G TPL L+C R +
Sbjct: 163 ASTNIQDTEGNTPLHLACDEERVE 186
>pdb|1QYM|A Chain A, X-Ray Structure Of Human Gankyrin
Length = 227
Score = 47.8 bits (112), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 54/204 (26%), Positives = 80/204 (39%), Gaps = 44/204 (21%)
Query: 120 MQYRGSLGETLLHVLIICDTKLHTRL---ARTLLK--CFPRLSQDV---------VEGEE 165
+ Y G L E L I+ D L TR +RT L C ++ V V ++
Sbjct: 14 LAYSGKLEE--LKESILADKSLATRTDQDSRTALHWACSAGHTEIVEFLLQLGVPVNDKD 71
Query: 166 YLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYL 225
G S LH+A + +E+V L+ GA V +
Sbjct: 72 DAGWSPLHIAASAGRDEIVKALLGKGAQVN-------------------------AVNQN 106
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL +AA + + +L++ GA PDAKD + +H L M L +
Sbjct: 107 GCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYEATAMHRAAAKGNLKMIHILLYYK--- 163
Query: 286 ASNGILNNDGFTPLTLSCQLGRAD 309
AS I + +G TPL L+C R +
Sbjct: 164 ASTNIQDTEGNTPLHLACDEERVE 187
>pdb|1N0R|A Chain A, 4ank: A Designed Ankyrin Repeat Protein With Four
Identical Consensus Repeats
Length = 126
Score = 46.6 bits (109), Expect = 3e-05, Method: Composition-based stats.
Identities = 43/149 (28%), Positives = 66/149 (44%), Gaps = 28/149 (18%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA + E+V L+EAGA+V + D+ G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAK---------DKN----------------GR 36
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA + V LL+++GA +AKD G LH+ N L++ L + A
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL---EAGAD 93
Query: 288 NGILNNDGFTPLTLSCQLGRADVFREMLE 316
+ +G TPL L+ + G +V + +LE
Sbjct: 94 VNAKDKNGRTPLHLAARNGHLEVVKLLLE 122
>pdb|4HB5|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267.
pdb|4HB5|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or267
Length = 169
Score = 44.3 bits (103), Expect = 2e-04, Method: Composition-based stats.
Identities = 27/90 (30%), Positives = 44/90 (48%), Gaps = 3/90 (3%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL +AA ++ + LL+ GA P+AKDS G LH N ++ L P
Sbjct: 37 GRTPLHYAAENGHKEIVKLLLSKGADPNAKDSDGRTPLHYAAENGHKEIVKLLLSKGADP 96
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREML 315
+ ++DG TPL + + G ++ + +L
Sbjct: 97 NAK---DSDGRTPLHYAAENGHKEIVKLLL 123
Score = 33.5 bits (75), Expect = 0.35, Method: Composition-based stats.
Identities = 20/71 (28%), Positives = 35/71 (49%), Gaps = 3/71 (4%)
Query: 245 LIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPLTLSCQ 304
L+++GA P+A DS G LH N ++ L P + ++DG TPL + +
Sbjct: 23 LLENGADPNASDSDGRTPLHYAAENGHKEIVKLLLSKGADPNAK---DSDGRTPLHYAAE 79
Query: 305 LGRADVFREML 315
G ++ + +L
Sbjct: 80 NGHKEIVKLLL 90
>pdb|2HE0|A Chain A, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
pdb|2HE0|B Chain B, Crystal Structure Of A Human Notch1 Ankyrin Domain Mutant
Length = 253
Score = 42.7 bits (99), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 48/164 (29%), Positives = 72/164 (43%), Gaps = 24/164 (14%)
Query: 168 GASALHLAIAYANNELVADLIEAGAN---------------VTQRAIGSFFLPRDQQTPR 212
GA+ALHLA AY+ ++ L+EA A+ V+ A G F Q
Sbjct: 57 GATALHLAAAYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF------QILI 110
Query: 213 PSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKL 272
+R TD + + G PL AA + E + LI+S A +A D G LH + +
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 170
Query: 273 DMFGYALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
D L K A+ + NN TPL L+ + G + + +L+
Sbjct: 171 DAAVVLL---KNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
>pdb|2P2C|P Chain P, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|Q Chain Q, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|R Chain R, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|S Chain S, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|T Chain T, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
pdb|2P2C|U Chain U, Inhibition Of Caspase-2 By A Designed Ankyrin Repeat
Protein (Darpin)
Length = 169
Score = 42.0 bits (97), Expect = 0.001, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 47/99 (47%), Gaps = 3/99 (3%)
Query: 218 DYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGY 277
D +LG PL AA + + +L+ GA +A D++G LH+ N L++
Sbjct: 39 DVNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVNAWDNYGATPLHLAADNGHLEIVEV 98
Query: 278 ALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
L+H A + +GFTPL L+ G ++ +L+
Sbjct: 99 LLKH---GADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 41/149 (27%), Positives = 60/149 (40%), Gaps = 33/149 (22%)
Query: 126 LGETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVA 185
LG T LH + H + LLK DV + Y GA+ LHLA + E+V
Sbjct: 46 LGHTPLH---LAAKTGHLEIVEVLLK----YGADVNAWDNY-GATPLHLAADNGHLEIVE 97
Query: 186 DLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLL 245
L++ GA+V + DYEG PL AA + + +L
Sbjct: 98 VLLKHGADVNAK--------------------DYEGFT-----PLHLAAYDGHLEIVEVL 132
Query: 246 IDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
+ GA +A+D FG + + N D+
Sbjct: 133 LKYGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 31.2 bits (69), Expect = 1.7, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 48/121 (39%), Gaps = 25/121 (20%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V ++LG + LHLA + E+V L++ GA+V
Sbjct: 40 VNATDWLGHTPLHLAAKTGHLEIVEVLLKYGADVN------------------------- 74
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
G PL AA + + +L+ GA +AKD G LH+ + L++ L+
Sbjct: 75 AWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIVEVLLK 134
Query: 281 H 281
+
Sbjct: 135 Y 135
Score = 29.3 bits (64), Expect = 6.1, Method: Composition-based stats.
Identities = 31/127 (24%), Positives = 60/127 (47%), Gaps = 10/127 (7%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
LG+ L A ++ V +L+ +GA +A D G+ LH+ L++ L++
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMANGADVNATDWLGHTPLHLAAKTGHLEIVEVLLKY--- 69
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREML----ELSCKEFWRYSNITCSAYP--LNAL 338
A +N G TPL L+ G ++ +L +++ K++ ++ + +AY L +
Sbjct: 70 GADVNAWDNYGATPLHLAADNGHLEIVEVLLKHGADVNAKDYEGFTPLHLAAYDGHLEIV 129
Query: 339 DTLLPDG 345
+ LL G
Sbjct: 130 EVLLKYG 136
>pdb|1N0Q|A Chain A, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
pdb|1N0Q|B Chain B, 3ank: A Designed Ankyrin Repeat Protein With Three
Identical Consensus Repeats
Length = 93
Score = 40.4 bits (93), Expect = 0.003, Method: Composition-based stats.
Identities = 29/91 (31%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL AA + V LL+++GA +AKD G LH+ N L++ L +
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL---EAG 58
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A + +G TPL L+ + G +V + +LE
Sbjct: 59 ADVNAKDKNGRTPLHLAARNGHLEVVKLLLE 89
Score = 38.1 bits (87), Expect = 0.014, Method: Composition-based stats.
Identities = 32/107 (29%), Positives = 47/107 (43%), Gaps = 25/107 (23%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA + E+V L+EAGA+V +D+ G
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVN---------AKDKN----------------GR 36
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
PL AA + V LL+++GA +AKD G LH+ N L++
Sbjct: 37 TPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEV 83
>pdb|3NOG|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOG|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 40.0 bits (92), Expect = 0.003, Method: Composition-based stats.
Identities = 26/99 (26%), Positives = 49/99 (49%), Gaps = 3/99 (3%)
Query: 218 DYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGY 277
D ++G PL AA + + +L+ +GA +A DS G LH+ L++
Sbjct: 39 DVNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEV 98
Query: 278 ALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
L++ +N +++GFTPL L+ +G ++ +L+
Sbjct: 99 LLKNGADVNAN---DHNGFTPLHLAANIGHLEIVEVLLK 134
Score = 32.3 bits (72), Expect = 0.65, Method: Composition-based stats.
Identities = 29/122 (23%), Positives = 51/122 (41%), Gaps = 8/122 (6%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVT---QRAIGSFFLPRDQQTPRP---- 213
V +++G + LHLA + + E+V L++ GA+V + L D+
Sbjct: 40 VNASDHVGWTPLHLAAYFGHLEIVEVLLKNGADVNADDSLGVTPLHLAADRGHLEVVEVL 99
Query: 214 -SRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKL 272
D + G PL AA + + +L+ GA +A+D FG + + N
Sbjct: 100 LKNGADVNANDHNGFTPLHLAANIGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNE 159
Query: 273 DM 274
D+
Sbjct: 160 DL 161
>pdb|4DRX|E Chain E, Gtp-Tubulin In Complex With A Darpin
pdb|4DRX|F Chain F, Gtp-Tubulin In Complex With A Darpin
Length = 169
Score = 40.0 bits (92), Expect = 0.004, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 51/121 (42%), Gaps = 25/121 (20%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V + G + LHLA Y + E+V L++ GA+V
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN------------------------- 74
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
+ +G PL AA + + +L+ GA +A D++G+ LH+ + L++ L+
Sbjct: 75 AIDIMGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 281 H 281
H
Sbjct: 135 H 135
>pdb|2QC9|A Chain A, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
pdb|2QC9|B Chain B, Mouse Notch 1 Ankyrin Repeat Intracellular Domain
Length = 210
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 168 GASALHLAIAYANNELVADLIEAGAN---------------VTQRAIGSFFLPRDQQTPR 212
G +ALHLA Y+ ++ L+EA A+ V+ A G F Q
Sbjct: 22 GETALHLAARYSRSDAAKRLLEASADAXIQDNMGRTPLHAAVSADAQGVF------QILL 75
Query: 213 PSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKL 272
+R TD + + G PL AA + E + LI+S A +A D G LH + +
Sbjct: 76 RNRATDLDARMHDGTTPLILAARLALEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 135
Query: 273 DMFGYALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
D L K A+ + NN TPL L+ + G + + +L+
Sbjct: 136 DAAVVLL---KNGANKDMQNNKEETPLFLAAREGSYETAKVLLD 176
>pdb|1N11|A Chain A, D34 Region Of Human Ankyrin-R And Linker
Length = 437
Score = 39.7 bits (91), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 29/94 (30%), Positives = 45/94 (47%), Gaps = 9/94 (9%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH---P 282
G PL AA V LL++ A P+A G LH+ V ++ LD+ L P
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLLPRGGSP 205
Query: 283 KTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
+PA N G+TPL ++ + + +V R +L+
Sbjct: 206 HSPAWN------GYTPLHIAAKQNQVEVARSLLQ 233
Score = 38.5 bits (88), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 41/177 (23%), Positives = 72/177 (40%), Gaps = 37/177 (20%)
Query: 142 HTRLARTLLK--CFPRLSQDVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAI 199
H + + LL+ P +S VE + LH+A + E+ L++ A V +A
Sbjct: 26 HLPIVKNLLQRGASPNVSNVKVE-------TPLHMAARAGHTEVAKYLLQNKAKVNAKA- 77
Query: 200 GSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFG 259
+D QTP L AA + ++ LL+++ A P+ + G
Sbjct: 78 ------KDDQTP------------------LHCAARIGHTNMVKLLLENNANPNLATTAG 113
Query: 260 NMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
+ LH+ ++ L + AS + GFTPL ++ + G+ V +LE
Sbjct: 114 HTPLHIAAREGHVETVLALL---EKEASQACMTKKGFTPLHVAAKYGKVRVAELLLE 167
Score = 34.3 bits (77), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 47/201 (23%), Positives = 82/201 (40%), Gaps = 26/201 (12%)
Query: 114 HEACWQMQYRGSLGETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALH 173
H W G T LH I + +AR+LL+ + + V+G + LH
Sbjct: 206 HSPAWN-------GYTPLH---IAAKQNQVEVARSLLQYGGSANAESVQG-----VTPLH 250
Query: 174 LAIAYANNELVADLI--EAGANVTQRA--IGSFFLPRDQQTPRPS---RH-TDYEGLAYL 225
LA + E+VA L+ +A N+ ++ + ++ P +H + +
Sbjct: 251 LAAQEGHAEMVALLLSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLIKHGVMVDATTRM 310
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL A+ N + L+ A +AK G LH D+ L++ +P
Sbjct: 311 GYTPLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKNGASP 370
Query: 286 ASNGILNNDGFTPLTLSCQLG 306
+++DG TPL ++ +LG
Sbjct: 371 NE---VSSDGTTPLAIAKRLG 388
>pdb|1MJ0|A Chain A, Sank E3_5: An Artificial Ankyrin Repeat Protein
Length = 166
Score = 39.7 bits (91), Expect = 0.004, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL AA + + +L+ +GA +A D G LH+ L++ L+H
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADVNASDLTGITPLHLAAATGHLEIVEVLLKH---G 103
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A +NDG TPL L+ + G ++ +L+
Sbjct: 104 ADVNAYDNDGHTPLHLAAKYGHLEIVEVLLK 134
Score = 31.6 bits (70), Expect = 1.2, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 48/114 (42%), Gaps = 25/114 (21%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA + + E+V L++ GA+V +D G+
Sbjct: 47 GYTPLHLAASNGHLEIVEVLLKNGADVNA--------------------SDLTGIT---- 82
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
PL AA + + +L+ GA +A D+ G+ LH+ L++ L+H
Sbjct: 83 -PLHLAAATGHLEIVEVLLKHGADVNAYDNDGHTPLHLAAKYGHLEIVEVLLKH 135
Score = 30.4 bits (67), Expect = 2.3, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 25/114 (21%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V + G + LHLA A + E+V L++ GA+V + D
Sbjct: 73 VNASDLTGITPLHLAAATGHLEIVEVLLKHGADVN------------------AYDND-- 112
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
G PL AA + + +L+ GA +A+D FG + + N D+
Sbjct: 113 -----GHTPLHLAAKYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|3NOC|D Chain D, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
pdb|3NOC|E Chain E, Designed Ankyrin Repeat Protein (Darpin) Binders To Acrb:
Plasticity Of The Interface
Length = 169
Score = 39.3 bits (90), Expect = 0.006, Method: Composition-based stats.
Identities = 28/99 (28%), Positives = 46/99 (46%), Gaps = 3/99 (3%)
Query: 218 DYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGY 277
D + G PL AA + + +L+ +GA +AKDS G LH+ L++
Sbjct: 39 DVNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKDSLGVTPLHLAARRGHLEIVEV 98
Query: 278 ALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
L K A ++ GFTPL L+ + G ++ +L+
Sbjct: 99 LL---KNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Score = 33.5 bits (75), Expect = 0.31, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 25/121 (20%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V ++ G + LHLA + + E+V L++ GA+V +
Sbjct: 40 VNARDFTGWTPLHLAAHFGHLEIVEVLLKNGADVNAKD---------------------- 77
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
LG PL AA + + +L+ +GA +A DS G LH+ L++ L+
Sbjct: 78 ---SLGVTPLHLAARRGHLEIVEVLLKNGADVNASDSHGFTPLHLAAKRGHLEIVEVLLK 134
Query: 281 H 281
+
Sbjct: 135 N 135
>pdb|2F8Y|A Chain A, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution.
pdb|2F8Y|B Chain B, Crystal Structure Of Human Notch1 Ankyrin Repeats To 1.55a
Resolution
Length = 223
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 168 GASALHLAIAYANNELVADLIEAGAN---------------VTQRAIGSFFLPRDQQTPR 212
G +ALHLA Y+ ++ L+EA A+ V+ A G F Q
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF------QILI 78
Query: 213 PSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKL 272
+R TD + + G PL AA + E + LI+S A +A D G LH + +
Sbjct: 79 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 138
Query: 273 DMFGYALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
D L K A+ + NN TPL L+ + G + + +L+
Sbjct: 139 DAAVVLL---KNGANKDMQNNREETPLFLAAREGSYETAKVLLD 179
>pdb|2F8X|K Chain K, Crystal Structure Of Activated Notch, Csl And Maml On
Hes-1 Promoter Dna Sequence
pdb|3NBN|B Chain B, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3NBN|E Chain E, Crystal Structure Of A Dimer Of Notch Transcription
Complex Trimers On Hes1 Dna
pdb|3V79|K Chain K, Structure Of Human Notch1 Transcription Complex Including
Csl, Ram, Ank, And Maml-1 On Hes-1 Promoter Dna Sequence
Length = 256
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 168 GASALHLAIAYANNELVADLIEAGAN---------------VTQRAIGSFFLPRDQQTPR 212
G +ALHLA Y+ ++ L+EA A+ V+ A G F Q
Sbjct: 58 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF------QILI 111
Query: 213 PSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKL 272
+R TD + + G PL AA + E + LI+S A +A D G LH + +
Sbjct: 112 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 171
Query: 273 DMFGYALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
D L K A+ + NN TPL L+ + G + + +L+
Sbjct: 172 DAAVVLL---KNGANKDMQNNREETPLFLAAREGSYETAKVLLD 212
>pdb|1YYH|A Chain A, Crystal Structure Of The Human Notch 1 Ankyrin Domain
pdb|1YYH|B Chain B, Crystal Structure Of The Human Notch 1 Ankyrin Domain
Length = 253
Score = 38.9 bits (89), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 46/164 (28%), Positives = 70/164 (42%), Gaps = 24/164 (14%)
Query: 168 GASALHLAIAYANNELVADLIEAGAN---------------VTQRAIGSFFLPRDQQTPR 212
G +ALHLA Y+ ++ L+EA A+ V+ A G F Q
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVF------QILI 110
Query: 213 PSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKL 272
+R TD + + G PL AA + E + LI+S A +A D G LH + +
Sbjct: 111 RNRATDLDARMHDGTTPLILAARLAVEGMLEDLINSHADVNAVDDLGKSALHWAAAVNNV 170
Query: 273 DMFGYALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
D L K A+ + NN TPL L+ + G + + +L+
Sbjct: 171 DAAVVLL---KNGANKDMQNNREETPLFLAAREGSYETAKVLLD 211
>pdb|4GPM|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264.
pdb|4GPM|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or264
Length = 169
Score = 38.9 bits (89), Expect = 0.008, Method: Composition-based stats.
Identities = 42/149 (28%), Positives = 58/149 (38%), Gaps = 25/149 (16%)
Query: 179 ANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRP---------------SRHTDYEGLA 223
N + V DLIE GA+V D +TP S+ D
Sbjct: 15 GNKDRVKDLIENGADVNAS-------DSDGRTPLHHAAENGHKEVVKLLISKGADVNAKD 67
Query: 224 YLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPK 283
G PL AA ++ V LLI GA +AKDS G LH N ++ +
Sbjct: 68 SDGRTPLHHAAENGHKEVVKLLISKGADVNAKDSDGRTPLHHAAENGHKEVVKLLI---S 124
Query: 284 TPASNGILNNDGFTPLTLSCQLGRADVFR 312
A ++DG TPL L+ + G +V +
Sbjct: 125 KGADVNTSDSDGRTPLDLAREHGNEEVVK 153
>pdb|4DUI|A Chain A, Darpin D1 Binding To Tubulin Beta Chain (not In Complex)
Length = 169
Score = 38.5 bits (88), Expect = 0.009, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 50/121 (41%), Gaps = 25/121 (20%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V + G + LHLA Y + E+V L++ GA+V
Sbjct: 40 VNATDASGLTPLHLAATYGHLEIVEVLLKHGADVN------------------------- 74
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
+ G PL AA + + +L+ GA +A D++G+ LH+ + L++ L+
Sbjct: 75 AIDIXGSTPLHLAALIGHLEIVEVLLKHGADVNAVDTWGDTPLHLAAIMGHLEIVEVLLK 134
Query: 281 H 281
H
Sbjct: 135 H 135
>pdb|4HQD|A Chain A, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265.
pdb|4HQD|B Chain B, Crystal Structure Of Engineered Protein. Northeast
Structural Genomics Consortium Target Or265
Length = 169
Score = 38.5 bits (88), Expect = 0.011, Method: Composition-based stats.
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 28/145 (19%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LH A + E+V LI GA+V ++ +D G
Sbjct: 37 GRTPLHYAAKEGHKEIVKLLISKGADVN------------------AKDSD-------GR 71
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL +AA ++ + LLI GA +AKDS G LH ++ + A
Sbjct: 72 TPLHYAAKEGHKEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI---SKGAD 128
Query: 288 NGILNNDGFTPLTLSCQLGRADVFR 312
++DG TPL L+ + G ++ +
Sbjct: 129 VNTSDSDGRTPLDLAREHGNEEIVK 153
Score = 34.7 bits (78), Expect = 0.14, Method: Composition-based stats.
Identities = 34/137 (24%), Positives = 55/137 (40%), Gaps = 28/137 (20%)
Query: 179 ANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSN 238
N + V DLIE GA+V + +D G PL +AA +
Sbjct: 15 GNKDRVKDLIENGADVN------------------ASDSD-------GRTPLHYAAKEGH 49
Query: 239 ESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTP 298
+ + LLI GA +AKDS G LH ++ + A ++DG TP
Sbjct: 50 KEIVKLLISKGADVNAKDSDGRTPLHYAAKEGHKEIVKLLI---SKGADVNAKDSDGRTP 106
Query: 299 LTLSCQLGRADVFREML 315
L + + G ++ + ++
Sbjct: 107 LHYAAKEGHKEIVKLLI 123
>pdb|2V4H|C Chain C, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
pdb|2V4H|D Chain D, Nemo Cc2-Lz Domain - 1d5 Darpin Complex
Length = 136
Score = 37.0 bits (84), Expect = 0.025, Method: Composition-based stats.
Identities = 28/92 (30%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
LG+ L A ++ V +L+ +GA +A D GN LH+ D L++ L+H
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMANGADVNANDRKGNTPLHLAADYDHLEIVEVLLKH--- 69
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A +NDG TPL L+ G ++ +L+
Sbjct: 70 GADVNAHDNDGSTPLHLAALFGHLEIVEVLLK 101
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 28/114 (24%), Positives = 45/114 (39%), Gaps = 25/114 (21%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V + G + LHLA Y + E+V L++ GA+V + D
Sbjct: 40 VNANDRKGNTPLHLAADYDHLEIVEVLLKHGADVN------------------AHDND-- 79
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
G PL AA + + +L+ GA +A+D FG + + N D+
Sbjct: 80 -----GSTPLHLAALFGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
>pdb|1OT8|A Chain A, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|B Chain B, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
pdb|1OT8|C Chain C, Structure Of The Ankyrin Domain Of The Drosophila Notch
Receptor
Length = 239
Score = 37.0 bits (84), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 41/81 (50%), Gaps = 2/81 (2%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
GE L AA + L+D+GA +++D+ G LH V D + +F LR+ T
Sbjct: 51 GETSLHLAARFARADAAKRLLDAGADANSQDNTGRTPLHAAVAADAMGVFQILLRNRATN 110
Query: 286 ASNGILNNDGFTPLTLSCQLG 306
+ + +DG TPL L+ +L
Sbjct: 111 LNARM--HDGTTPLILAARLA 129
>pdb|3Q9U|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9U|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|C Chain C, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
pdb|3Q9N|D Chain D, In Silico And In Vitro Co-Evolution Of A High Affinity
Complementary Protein-Protein Interface
Length = 158
Score = 35.8 bits (81), Expect = 0.056, Method: Composition-based stats.
Identities = 28/100 (28%), Positives = 46/100 (46%), Gaps = 8/100 (8%)
Query: 217 TDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFG 276
TD GL PL AA + +L+ +GA +A DS G LH+ + L++
Sbjct: 35 TDDNGLT-----PLHLAAANGQLEIVEVLLKNGADVNASDSAGITPLHLAAYDGHLEIVE 89
Query: 277 YALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
L+H A + G+TPL L+ G+ ++ +L+
Sbjct: 90 VLLKH---GADVNAYDRAGWTPLHLAALSGQLEIVEVLLK 126
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 35/143 (24%), Positives = 58/143 (40%), Gaps = 28/143 (19%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA A E+V L++ GA+V +D G+
Sbjct: 39 GLTPLHLAAANGQLEIVEVLLKNGADVNA--------------------SDSAGIT---- 74
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA + + +L+ GA +A D G LH+ ++ +L++ L+H +
Sbjct: 75 -PLHLAAYDGHLEIVEVLLKHGADVNAYDRAGWTPLHLAALSGQLEIVEVLLKHGADVNA 133
Query: 288 NGILNNDGFTPLTLSCQLGRADV 310
L G T +S G+ D+
Sbjct: 134 QDAL---GLTAFDISINQGQEDL 153
Score = 30.0 bits (66), Expect = 3.1, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
LG+ L AA ++ V +L+ +GA +A D G LH+ N +L++ L K
Sbjct: 6 LGKKLLEAAAAGQDDEV-RILMANGADVNATDDNGLTPLHLAAANGQLEIVEVLL---KN 61
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A ++ G TPL L+ G ++ +L+
Sbjct: 62 GADVNASDSAGITPLHLAAYDGHLEIVEVLLK 93
>pdb|2XEH|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEH|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.8 bits (81), Expect = 0.060, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL AA + + +L+ +GA +AKD G LH+ L++ L K
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL---KAG 91
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A + DG+TPL L+ + G ++ +L+
Sbjct: 92 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 34.3 bits (77), Expect = 0.16, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 61/150 (40%), Gaps = 28/150 (18%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V ++ G + LHLA + E+V L++AGA+V + D +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK--------------------DKD 67
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
G PL AA + + +L+ +GA +AKD G LH+ L++ L
Sbjct: 68 GYT-----PLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL- 121
Query: 281 HPKTPASNGILNNDGFTPLTLSCQLGRADV 310
K A + G TP L+ + G D+
Sbjct: 122 --KAGADVNAQDKFGKTPFDLAIREGHEDI 149
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
LG+ L A ++ V +L+ +GA +AKD G LH+ L++ L K
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL---KA 57
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A + DG+TPL L+ + G ++ +L+
Sbjct: 58 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
>pdb|2XEE|A Chain A, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|B Chain B, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|C Chain C, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module.
pdb|2XEE|D Chain D, Structural Determinants For Improved Thermal Stability Of
Designed Ankyrin Repeat Proteins With A Redesigned C-
Capping Module
Length = 157
Score = 35.8 bits (81), Expect = 0.060, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL AA + + +L+ +GA +AKD G LH+ L++ L K
Sbjct: 35 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL---KAG 91
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A + DG+TPL L+ + G ++ +L+
Sbjct: 92 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 122
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 38/150 (25%), Positives = 60/150 (40%), Gaps = 28/150 (18%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V ++ G + LHLA + E+V L++AGA+V + D +
Sbjct: 28 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK--------------------DKD 67
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
G PL AA + + +L+ +GA +AKD G LH+ L++ L
Sbjct: 68 GYT-----PLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL- 121
Query: 281 HPKTPASNGILNNDGFTPLTLSCQLGRADV 310
K A + G TP L+ G D+
Sbjct: 122 --KAGADVNAQDKFGKTPFDLAIDNGNEDI 149
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
LG+ L A ++ V +L+ +GA +AKD G LH+ L++ L K
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL---KA 57
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A + DG+TPL L+ + G ++ +L+
Sbjct: 58 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 89
>pdb|2QYJ|A Chain A, Crystal Structure Of A Designed Full Consensus Ankyrin
Length = 166
Score = 35.8 bits (81), Expect = 0.060, Method: Composition-based stats.
Identities = 26/91 (28%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL AA + + +L+ +GA +AKD G LH+ L++ L K
Sbjct: 47 GYTPLHLAAREGHLEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLL---KAG 103
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A + DG+TPL L+ + G ++ +L+
Sbjct: 104 ADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 134
Score = 32.3 bits (72), Expect = 0.68, Method: Composition-based stats.
Identities = 33/129 (25%), Positives = 55/129 (42%), Gaps = 22/129 (17%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTP--RPSRHTD 218
V ++ G + LHLA + E+V L++AGA+V + +D TP +R
Sbjct: 40 VNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAK-------DKDGYTPLHLAAREGH 92
Query: 219 YEGLAYL-------------GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHM 265
E + L G PL AA + + +L+ +GA +A+D FG +
Sbjct: 93 LEIVEVLLKAGADVNAKDKDGYTPLHLAAREGHLEIVEVLLKAGADVNAQDKFGKTAFDI 152
Query: 266 VVVNDKLDM 274
+ N D+
Sbjct: 153 SIDNGNEDL 161
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
LG+ L A ++ V +L+ +GA +AKD G LH+ L++ L K
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMANGADVNAKDKDGYTPLHLAAREGHLEIVEVLL---KA 69
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A + DG+TPL L+ + G ++ +L+
Sbjct: 70 GADVNAKDKDGYTPLHLAAREGHLEIVEVLLK 101
>pdb|3B7B|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B7B|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 1)
pdb|3B95|A Chain A, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
pdb|3B95|B Chain B, Euhmt1 (Glp) Ankyrin Repeat Domain (Structure 2)
Length = 237
Score = 35.4 bits (80), Expect = 0.091, Method: Compositional matrix adjust.
Identities = 35/153 (22%), Positives = 62/153 (40%), Gaps = 41/153 (26%)
Query: 170 SALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTP--RPSRHTDYEGLAYLGE 227
S LH A + ++ L++AGAN+ DQ+TP + + E + YL
Sbjct: 13 SPLHAAAEAGHVDICHMLVQAGANIDT-------CSEDQRTPLMEAAENNHLEAVKYL-- 63
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
I +GA+ D KD+ G+ LH+ ++ Y L S
Sbjct: 64 ------------------IKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLL-------S 98
Query: 288 NGIL-----NNDGFTPLTLSCQLGRADVFREML 315
NG + ++ G+TP+ + + D+ + +L
Sbjct: 99 NGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLL 131
>pdb|3TWU|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1
Length = 167
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 52/141 (36%), Gaps = 31/141 (21%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
+EG + ++ LH A Y +V L++ GA+V + G
Sbjct: 40 IEGRQ---STPLHFAAGYNRVSVVEYLLQHGADVHAKDKG-------------------- 76
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
G PL A + V LL+ GA+ + D + LH K ++ L+
Sbjct: 77 -----GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 131
Query: 281 HPKTPASNGILNNDGFTPLTL 301
H P N DG TPL L
Sbjct: 132 HGADPTKK---NRDGNTPLDL 149
>pdb|3TWR|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWR|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human 3bp2
pdb|3TWS|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWS|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Terf1 (Chimeric Peptide)
pdb|3TWT|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWT|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Mcl1 (Chimeric Peptide)
pdb|3TWV|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|C Chain C, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWV|D Chain D, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Numa1 (Chimeric Peptide)
pdb|3TWW|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWW|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Lnpep (Chimeric Peptide)
pdb|3TWX|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
pdb|3TWX|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 In
Complex With Peptide From Human Fnbp1 (Chimeric Peptide)
Length = 165
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 52/141 (36%), Gaps = 31/141 (21%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
+EG + ++ LH A Y +V L++ GA+V + G
Sbjct: 38 IEGRQ---STPLHFAAGYNRVSVVEYLLQHGADVHAKDKG-------------------- 74
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
G PL A + V LL+ GA+ + D + LH K ++ L+
Sbjct: 75 -----GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 129
Query: 281 HPKTPASNGILNNDGFTPLTL 301
H P N DG TPL L
Sbjct: 130 HGADPTKK---NRDGNTPLDL 147
>pdb|3TWQ|A Chain A, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
pdb|3TWQ|B Chain B, Crystal Structure Of Arc4 From Human Tankyrase 2 (Apo
Form)
Length = 175
Score = 35.4 bits (80), Expect = 0.092, Method: Composition-based stats.
Identities = 35/141 (24%), Positives = 52/141 (36%), Gaps = 31/141 (21%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
+EG + ++ LH A Y +V L++ GA+V + G
Sbjct: 42 IEGRQ---STPLHFAAGYNRVSVVEYLLQHGADVHAKDKG-------------------- 78
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
G PL A + V LL+ GA+ + D + LH K ++ L+
Sbjct: 79 -----GLVPLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLLQ 133
Query: 281 HPKTPASNGILNNDGFTPLTL 301
H P N DG TPL L
Sbjct: 134 HGADPTKK---NRDGNTPLDL 151
>pdb|1OY3|D Chain D, Crystal Structure Of An IkbbetaNF-Kb P65 Homodimer Complex
Length = 282
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 24/95 (25%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
+E E Y G + LH+A+ + + E+V L +AGA++ + P P+
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK--------------PEPT------ 190
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAK 255
G PL A SV LL+ +GA P A+
Sbjct: 191 ----CGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 112 RDHEACWQMQYRGSLGETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASA 171
RD + Q++ G T LHV +I RL R D+ + E G +
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-------GADLNKPEPTCGRTP 195
Query: 172 LHLAIAYANNELVADLIEAGANVTQRAIG 200
LHLA+ ++ L++AGA+ T R G
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYG 224
>pdb|1K3Z|D Chain D, X-Ray Crystal Structure Of The IkbbNF-Kb P65 Homodimer
Complex
Length = 282
Score = 35.0 bits (79), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/95 (28%), Positives = 42/95 (44%), Gaps = 24/95 (25%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
+E E Y G + LH+A+ + + E+V L +AGA++ + P P+
Sbjct: 151 LEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLNK--------------PEPT------ 190
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAK 255
G PL A SV LL+ +GA P A+
Sbjct: 191 ----CGRTPLHLAVEAQAASVLELLLKAGADPTAR 221
Score = 32.0 bits (71), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 39/89 (43%), Gaps = 7/89 (7%)
Query: 112 RDHEACWQMQYRGSLGETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASA 171
RD + Q++ G T LHV +I RL R D+ + E G +
Sbjct: 143 RDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDA-------GADLNKPEPTCGRTP 195
Query: 172 LHLAIAYANNELVADLIEAGANVTQRAIG 200
LHLA+ ++ L++AGA+ T R G
Sbjct: 196 LHLAVEAQAASVLELLLKAGADPTARMYG 224
>pdb|3ZU7|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Map Kinase Erk2
Length = 169
Score = 35.0 bits (79), Expect = 0.11, Method: Composition-based stats.
Identities = 30/114 (26%), Positives = 50/114 (43%), Gaps = 25/114 (21%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G++ LHLA + E+V L++ GA+V +R TD G
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGADVN------------------ARDTD-------GW 81
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
PL AA + + +L+ GA +A+D++G LH+ L++ L+H
Sbjct: 82 TPLHLAADNGHLEIVEVLLKYGADVNAQDAYGLTPLHLAADRGHLEIVEVLLKH 135
Score = 33.5 bits (75), Expect = 0.32, Method: Composition-based stats.
Identities = 24/91 (26%), Positives = 42/91 (46%), Gaps = 3/91 (3%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL AA + + +L+ GA +A+D+ G LH+ N L++ L++
Sbjct: 47 GSTPLHLAAWIGHPEIVEVLLKHGADVNARDTDGWTPLHLAADNGHLEIVEVLLKY---G 103
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A + G TPL L+ G ++ +L+
Sbjct: 104 ADVNAQDAYGLTPLHLAADRGHLEIVEVLLK 134
>pdb|2Y0B|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
pdb|2Y0B|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4_s76r
Length = 136
Score = 35.0 bits (79), Expect = 0.12, Method: Composition-based stats.
Identities = 27/107 (25%), Positives = 43/107 (40%), Gaps = 25/107 (23%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA + E+V L++ GA+V R I G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNARDI-------------------------WGR 81
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
PL AA + + +L++ GA +A+D FG + + N D+
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
>pdb|4GRG|A Chain A, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
pdb|4GRG|B Chain B, Crystal Structure Of Ige Complexed With E2_79, An Anti-Ige
Inhibitor
Length = 135
Score = 34.7 bits (78), Expect = 0.15, Method: Composition-based stats.
Identities = 29/114 (25%), Positives = 46/114 (40%), Gaps = 25/114 (21%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V +Y G + LHLA + E+V L++ GA+V A G+
Sbjct: 40 VNANDYWGHTPLHLAAMLGHLEIVEVLLKNGADVN--ATGN------------------- 78
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
G PL AA + + +L+ GA +A+D FG + + N D+
Sbjct: 79 ----TGRTPLHLAAWADHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 30.8 bits (68), Expect = 2.0, Method: Composition-based stats.
Identities = 17/58 (29%), Positives = 28/58 (48%)
Query: 224 YLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
Y G PL AA + + +L+ +GA +A + G LH+ D L++ L+H
Sbjct: 45 YWGHTPLHLAAMLGHLEIVEVLLKNGADVNATGNTGRTPLHLAAWADHLEIVEVLLKH 102
>pdb|4ATZ|D Chain D, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|E Chain E, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
pdb|4ATZ|F Chain F, Ad5 Knob In Complex With A Designed Ankyrin Repeat Protein
Length = 154
Score = 34.7 bits (78), Expect = 0.16, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
LG+ L A ++ V +L+ +GA +A D +G LHM L++ LR+
Sbjct: 2 LGKKLLEAARAGQDDEV-RILMANGADANAYDHYGRTPLHMAAAVGHLEIVEVLLRN--- 57
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A ++ +G TPL L+ LG ++ +L+
Sbjct: 58 GADVNAVDTNGTTPLHLAASLGHLEIVEVLLK 89
Score = 32.0 bits (71), Expect = 1.0, Method: Composition-based stats.
Identities = 24/99 (24%), Positives = 43/99 (43%), Gaps = 3/99 (3%)
Query: 218 DYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGY 277
D + G PL AA + + +L+ +GA +A D+ G LH+ L++
Sbjct: 27 DANAYDHYGRTPLHMAAAVGHLEIVEVLLRNGADVNAVDTNGTTPLHLAASLGHLEIVEV 86
Query: 278 ALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
L++ A + G TPL L+ G ++ +L+
Sbjct: 87 LLKY---GADVNAKDATGITPLYLAAYWGHLEIVEVLLK 122
Score = 30.4 bits (67), Expect = 2.7, Method: Composition-based stats.
Identities = 33/146 (22%), Positives = 57/146 (39%), Gaps = 28/146 (19%)
Query: 165 EYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAY 224
++ G + LH+A A + E+V L+ GA+V +
Sbjct: 32 DHYGRTPLHMAAAVGHLEIVEVLLRNGADVN-------------------------AVDT 66
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
G PL AA + + +L+ GA +AKD+ G L++ L++ L+H
Sbjct: 67 NGTTPLHLAASLGHLEIVEVLLKYGADVNAKDATGITPLYLAAYWGHLEIVEVLLKH--- 123
Query: 285 PASNGILNNDGFTPLTLSCQLGRADV 310
A + G T +S +G D+
Sbjct: 124 GADVNAQDKFGKTAFDISIDIGNEDL 149
>pdb|2BKK|B Chain B, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
pdb|2BKK|D Chain D, Crystal Structure Of Aminoglycoside Phosphotransferase Aph
(3')-Iiia In Complex With The Inhibitor Ar_3a
Length = 169
Score = 34.3 bits (77), Expect = 0.18, Method: Composition-based stats.
Identities = 27/92 (29%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
LG+ L A ++ V +L+ +GA +A D FG LH+VV N L++ L++
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMANGADVNANDWFGITPLHLVVNNGHLEIIEVLLKY--- 69
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A + G+TPL L+ G ++ +L+
Sbjct: 70 AADVNASDKSGWTPLHLAAYRGHLEIVEVLLK 101
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 28/123 (22%), Positives = 50/123 (40%), Gaps = 10/123 (8%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRH---- 216
V ++ G + LHL + + E++ L++ A+V + S + P R
Sbjct: 40 VNANDWFGITPLHLVVNNGHLEIIEVLLKYAADVNA-SDKSGWTPLHLAAYRGHLEIVEV 98
Query: 217 -----TDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDK 271
D + Y G PL AA + + +L+ GA +A+D FG + + N
Sbjct: 99 LLKYGADVNAMDYQGYTPLHLAAEDGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGN 158
Query: 272 LDM 274
D+
Sbjct: 159 EDL 161
>pdb|2RFM|A Chain A, Structure Of A Thermophilic Ankyrin Repeat Protein
pdb|2RFM|B Chain B, Structure Of A Thermophilic Ankyrin Repeat Protein
Length = 192
Score = 34.3 bits (77), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 24/94 (25%), Positives = 44/94 (46%), Gaps = 3/94 (3%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G L WA + + L+ G+ + KD G L ++ +M + L H
Sbjct: 68 GSTALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLLEHG--- 124
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLELSC 319
A+ N +G TPL ++ + GR+++ +++LEL
Sbjct: 125 ANVNDRNLEGETPLIVASKYGRSEIVKKLLELGA 158
>pdb|2BKG|A Chain A, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
pdb|2BKG|B Chain B, Crystal Structure Of E3_19 An Designed Ankyrin Repeat
Protein
Length = 166
Score = 33.9 bits (76), Expect = 0.22, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 49/121 (40%), Gaps = 25/121 (20%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V E+ G + LHLA + E+V L++ GA+V
Sbjct: 40 VNAEDTYGDTPLHLAARVGHLEIVEVLLKNGADVN------------------------- 74
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
L + G PL AA + + +L+ GA +A D+ G+ LH+ L++ L+
Sbjct: 75 ALDFSGSTPLHLAAKRGHLEIVEVLLKYGADVNADDTIGSTPLHLAADTGHLEIVEVLLK 134
Query: 281 H 281
+
Sbjct: 135 Y 135
Score = 30.8 bits (68), Expect = 1.9, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
LG+ L A ++ V +L+ +GA +A+D++G+ LH+ L++ L K
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMANGADVNAEDTYGDTPLHLAARVGHLEIVEVLL---KN 69
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A L+ G TPL L+ + G ++ +L+
Sbjct: 70 GADVNALDFSGSTPLHLAAKRGHLEIVEVLLK 101
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 22/91 (24%), Positives = 43/91 (47%), Gaps = 3/91 (3%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G+ PL AA + + +L+ +GA +A D G+ LH+ L++ L++
Sbjct: 47 GDTPLHLAARVGHLEIVEVLLKNGADVNALDFSGSTPLHLAAKRGHLEIVEVLLKYGADV 106
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
++ + G TPL L+ G ++ +L+
Sbjct: 107 NADDTI---GSTPLHLAADTGHLEIVEVLLK 134
>pdb|3HG0|D Chain D, Crystal Structure Of A Darpin In Complex With Orf49 From
Lactococcal Phage Tp901-1
Length = 136
Score = 33.5 bits (75), Expect = 0.29, Method: Composition-based stats.
Identities = 27/114 (23%), Positives = 46/114 (40%), Gaps = 25/114 (21%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V E+ +G + LHLA + E+V L++ GA+V
Sbjct: 40 VNAEDKVGLTPLHLAAMNDHLEIVEVLLKNGADVN------------------------- 74
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
+ +GE PL A + + +L+ GA +A+D FG + + N D+
Sbjct: 75 AIDAIGETPLHLVAMYGHLEIVEVLLKHGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 31.2 bits (69), Expect = 1.4, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 44/92 (47%), Gaps = 4/92 (4%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
LG+ L A ++ V +L+ +GA +A+D G LH+ +ND L++ L K
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMANGADVNAEDKVGLTPLHLAAMNDHLEIVEVLL---KN 69
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A ++ G TPL L G ++ +L+
Sbjct: 70 GADVNAIDAIGETPLHLVAMYGHLEIVEVLLK 101
Score = 30.4 bits (67), Expect = 2.4, Method: Composition-based stats.
Identities = 17/57 (29%), Positives = 30/57 (52%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
+G PL AA + + +L+ +GA +A D+ G LH+V + L++ L+H
Sbjct: 46 VGLTPLHLAAMNDHLEIVEVLLKNGADVNAIDAIGETPLHLVAMYGHLEIVEVLLKH 102
>pdb|4B93|B Chain B, Complex Of Vamp7 Cytoplasmic Domain With 2nd Ankyrin
Repeat Domain Of Varp
Length = 269
Score = 33.5 bits (75), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 19/62 (30%), Positives = 32/62 (51%), Gaps = 3/62 (4%)
Query: 259 GNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLELS 318
G+ LH+ ++ + D+ L+H A+ G N D PL L+CQ G V + +L+ +
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHG---ANAGARNADQAVPLHLACQQGHFQVVKCLLDSN 142
Query: 319 CK 320
K
Sbjct: 143 AK 144
Score = 30.8 bits (68), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 31/129 (24%), Positives = 52/129 (40%), Gaps = 22/129 (17%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPR--PSRHTDYEGLAYL 225
G+S LH+A + +L+ L++ GAN R DQ P + ++ + L
Sbjct: 86 GSSPLHVAALHGRADLIPLLLKHGANAGARNA-------DQAVPLHLACQQGHFQVVKCL 138
Query: 226 -------------GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKL 272
G PL +A + + LL+ GA +A ++ GN LH V+ +
Sbjct: 139 LDSNAKPNKKDLSGNTPLIYACSGGHHELVALLLQHGASINASNNKGNTALHEAVIEKHV 198
Query: 273 DMFGYALRH 281
+ L H
Sbjct: 199 FVVELLLLH 207
>pdb|2J8S|D Chain D, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|2J8S|E Chain E, Drug Export Pathway Of Multidrug Exporter Acrb Revealed By
Darpin Inhibitors
pdb|4DX5|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX5|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX6|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|D Chain D, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
pdb|4DX7|E Chain E, Transport Of Drugs By The Multidrug Transporter Acrb
Involves An Access And A Deep Binding Pocket That Are
Separated By A Switch-Loop
Length = 169
Score = 33.1 bits (74), Expect = 0.36, Method: Composition-based stats.
Identities = 25/99 (25%), Positives = 45/99 (45%), Gaps = 3/99 (3%)
Query: 218 DYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGY 277
D +G PL AA + + +L+ +GA +A D+ G+ LH+ L++
Sbjct: 39 DVNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVNAYDTLGSTPLHLAAHFGHLEIVEV 98
Query: 278 ALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
L K A +++G TPL L+ G ++ +L+
Sbjct: 99 LL---KNGADVNAKDDNGITPLHLAANRGHLEIVEVLLK 134
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 31/123 (25%), Positives = 51/123 (41%), Gaps = 29/123 (23%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V + +G + LHLA + + E+V L++ GA+V
Sbjct: 40 VNAADVVGWTPLHLAAYWGHLEIVEVLLKNGADVN------------------------- 74
Query: 221 GLAY--LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYA 278
AY LG PL AA + + +L+ +GA +AKD G LH+ L++
Sbjct: 75 --AYDTLGSTPLHLAAHFGHLEIVEVLLKNGADVNAKDDNGITPLHLAANRGHLEIVEVL 132
Query: 279 LRH 281
L++
Sbjct: 133 LKY 135
>pdb|2V5Q|C Chain C, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
pdb|2V5Q|D Chain D, Crystal Structure Of Wild-type Plk-1 Kinase Domain In
Complex With A Selective Darpin
Length = 167
Score = 33.1 bits (74), Expect = 0.45, Method: Composition-based stats.
Identities = 26/92 (28%), Positives = 45/92 (48%), Gaps = 4/92 (4%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
LG+ L A ++ V +LI +GA +A D+ G LH+ V+ L++ L+H
Sbjct: 14 LGKKLLEAARAGQDDEV-RILIANGADVNAVDNTGLTPLHLAAVSGHLEIVEVLLKHGAD 72
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
+ + GFTPL L+ G ++ +L+
Sbjct: 73 VDAADVY---GFTPLHLAAMTGHLEIVEVLLK 101
Score = 28.5 bits (62), Expect = 9.0, Method: Composition-based stats.
Identities = 26/114 (22%), Positives = 43/114 (37%), Gaps = 25/114 (21%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V+ + G + LHLA + E+V L++ GA+V
Sbjct: 73 VDAADVYGFTPLHLAAMTGHLEIVEVLLKYGADVN------------------------- 107
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
G PL AA + + +L+ GA +A+D FG + + N D+
Sbjct: 108 AFDMTGSTPLHLAADEGHLEIVEVLLKYGADVNAQDKFGKTAFDISIDNGNEDL 161
>pdb|2DZN|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZN|E Chain E, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|A Chain A, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
pdb|2DZO|C Chain C, Crystal Structure Analysis Of Yeast Nas6p Complexed With
The Proteasome Subunit, Rpt3
Length = 228
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 225 LGEYPLSWAACCSNE--SVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHP 282
+ YPL AC NE V LL ++ KD G + LH V ++ + L
Sbjct: 1 MSNYPLH-QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59
Query: 283 KTPASNGILNNDGFTPLTLSCQLGRADVFREMLELSCK 320
+ + ++ G+TP ++C +G +V + + + K
Sbjct: 60 ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK 97
>pdb|1WG0|A Chain A, Structural Comparison Of Nas6p Protein Structures In Two
Different Crystal Forms
Length = 243
Score = 32.7 bits (73), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 225 LGEYPLSWAACCSNE--SVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHP 282
+ YPL AC NE V LL ++ KD G + LH V ++ + L
Sbjct: 1 MSNYPLH-QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59
Query: 283 KTPASNGILNNDGFTPLTLSCQLGRADVFREMLELSCK 320
+ + ++ G+TP ++C +G +V + + + K
Sbjct: 60 ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK 97
>pdb|1IXV|A Chain A, Crystal Structure Analysis Of Homolog Of Oncoprotein
Gankyrin, An Interactor Of Rb And Cdk46
Length = 231
Score = 32.7 bits (73), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 24/98 (24%), Positives = 43/98 (43%), Gaps = 3/98 (3%)
Query: 225 LGEYPLSWAACCSNE--SVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHP 282
+ YPL AC NE V LL ++ KD G + LH V ++ + L
Sbjct: 1 MSNYPLH-QACMENEFFKVQELLHSKPSLLLQKDQDGRIPLHWSVSFQAHEITSFLLSKM 59
Query: 283 KTPASNGILNNDGFTPLTLSCQLGRADVFREMLELSCK 320
+ + ++ G+TP ++C +G +V + + + K
Sbjct: 60 ENVNLDDYPDDSGWTPFHIACSVGNLEVVKSLYDRPLK 97
>pdb|2JAB|A Chain A, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|B Chain B, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
pdb|2JAB|C Chain C, A Designed Ankyrin Repeat Protein Evolved To Picomolar
Affinity To Her2
Length = 136
Score = 32.7 bits (73), Expect = 0.58, Method: Composition-based stats.
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 26/116 (22%)
Query: 159 DVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTD 218
DV +EY G + L+LA A+ + E+V L++ GA+V
Sbjct: 39 DVNAKDEY-GLTPLYLATAHGHLEIVEVLLKNGADVN----------------------- 74
Query: 219 YEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
+ +G PL AA + + +L+ GA +A+D FG + + N D+
Sbjct: 75 --AVDAIGFTPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDL 128
Score = 30.8 bits (68), Expect = 2.2, Method: Composition-based stats.
Identities = 25/92 (27%), Positives = 46/92 (50%), Gaps = 4/92 (4%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
LG+ L A ++ V +L+ +GA +AKD +G L++ + L++ L K
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMANGADVNAKDEYGLTPLYLATAHGHLEIVEVLL---KN 69
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A ++ GFTPL L+ +G ++ +L+
Sbjct: 70 GADVNAVDAIGFTPLHLAAFIGHLEIAEVLLK 101
>pdb|4F6R|D Chain D, Tubulin:stathmin-Like Domain Complex
Length = 169
Score = 32.7 bits (73), Expect = 0.59, Method: Composition-based stats.
Identities = 28/121 (23%), Positives = 50/121 (41%), Gaps = 25/121 (20%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V E+ G + LHLA + E+V L++ GA+V
Sbjct: 40 VNAEDDSGKTPLHLAAIKGHLEIVEVLLKHGADVN------------------------- 74
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
+G+ PL AA + + +L+ +GA +A D++G LH+ L++ L+
Sbjct: 75 AADKMGDTPLHLAALYGHLEIVEVLLKNGADVNATDTYGFTPLHLAADAGHLEIVEVLLK 134
Query: 281 H 281
+
Sbjct: 135 Y 135
Score = 29.3 bits (64), Expect = 6.4, Method: Composition-based stats.
Identities = 24/92 (26%), Positives = 43/92 (46%), Gaps = 4/92 (4%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
LG+ L A ++ V +L+ +GA +A+D G LH+ + L++ L+H
Sbjct: 14 LGKKLLEAARAGQDDEV-RILMANGADVNAEDDSGKTPLHLAAIKGHLEIVEVLLKH--- 69
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A + G TPL L+ G ++ +L+
Sbjct: 70 GADVNAADKMGDTPLHLAALYGHLEIVEVLLK 101
>pdb|2XZD|G Chain G, Caspase-3 In Complex With An Inhibitory Darpin-3.4
pdb|2XZD|H Chain H, Caspase-3 In Complex With An Inhibitory Darpin-3.4
Length = 136
Score = 32.3 bits (72), Expect = 0.75, Method: Composition-based stats.
Identities = 26/107 (24%), Positives = 42/107 (39%), Gaps = 25/107 (23%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA + E+V L++ GA+V I G
Sbjct: 47 GVTPLHLAAKRGHLEIVEVLLKHGADVNASDI-------------------------WGR 81
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
PL AA + + +L++ GA +A+D FG + + N D+
Sbjct: 82 TPLHLAATVGHLEIVEVLLEYGADVNAQDKFGKTAFDISIDNGNEDL 128
Score = 28.5 bits (62), Expect = 9.1, Method: Composition-based stats.
Identities = 20/73 (27%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 244 LLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPLTLSC 303
+L+ +GA +A D G LH+ L++ L+H ++ I G TPL L+
Sbjct: 32 ILMANGADVNAMDDAGVTPLHLAAKRGHLEIVEVLLKHGADVNASDIW---GRTPLHLAA 88
Query: 304 QLGRADVFREMLE 316
+G ++ +LE
Sbjct: 89 TVGHLEIVEVLLE 101
>pdb|3ZUV|B Chain B, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
pdb|3ZUV|D Chain D, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Phosphorylated Map Kinase
Erk2
Length = 136
Score = 32.0 bits (71), Expect = 0.87, Method: Composition-based stats.
Identities = 19/64 (29%), Positives = 31/64 (48%)
Query: 218 DYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGY 277
D L G PL AA + + +L+ GA +A+D+FG LH+ + L++
Sbjct: 39 DVNALDEDGLTPLHLAAQLGHLEIVEVLLKYGADVNAEDNFGITPLHLAAIRGHLEIVEV 98
Query: 278 ALRH 281
L+H
Sbjct: 99 LLKH 102
>pdb|3EU9|A Chain A, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|B Chain B, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
pdb|3EU9|C Chain C, The Ankyrin Repeat Domain Of Huntingtin Interacting
Protein 14
Length = 240
Score = 32.0 bits (71), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 15/37 (40%), Positives = 24/37 (64%)
Query: 163 GEEYLGASALHLAIAYANNELVADLIEAGANVTQRAI 199
G++Y +ALH A+ N +++ L+EAGANV + I
Sbjct: 172 GDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQNI 208
>pdb|3DEO|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
pdb|3DEP|A Chain A, Structural Basis For Specific Substrate Recognition By The
Chloroplast Signal Recognition Particle Protein Cpsrp43
Length = 183
Score = 31.6 bits (70), Expect = 1.1, Method: Composition-based stats.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVT---QRAIGSFFLPRD--QQTPR 212
G +ALH+A Y E+V L+E GA++ +R + + L R+ + TP+
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPK 159
>pdb|1IKN|D Chain D, IkappabalphaNF-Kappab Complex
Length = 236
Score = 31.6 bits (70), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
L + PL A + + L+ +G P+ +D GN LH+ L G + T
Sbjct: 44 LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 103
Query: 285 PASNGIL---NNDGFTPLTLS 302
P + IL N +G T L L+
Sbjct: 104 PHLHSILKATNYNGHTCLHLA 124
Score = 30.4 bits (67), Expect = 2.7, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVAD 186
G T LH+ +H L +++ L DV E G +ALHLA+ N +LV+
Sbjct: 117 GHTCLHL-----ASIHGYLG--IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 169
Query: 187 LIEAGANVTQRAIGSFFLPRDQQTPRPS 214
L++ GA+V R + P RPS
Sbjct: 170 LLKCGADVN-RVTYQGYSPYQLTWGRPS 196
>pdb|3UI2|A Chain A, Crystal Structure Of The Cpsrp54 Tail Bound To Cpsrp43
Length = 244
Score = 31.2 bits (69), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 17/50 (34%), Positives = 29/50 (58%), Gaps = 5/50 (10%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVT---QRAIGSFFLPRD--QQTPR 212
G +ALH+A Y E+V L+E GA++ +R + + L R+ + TP+
Sbjct: 111 GLTALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPK 160
>pdb|1NFI|E Chain E, I-Kappa-B-AlphaNF-Kappa-B Complex
pdb|1NFI|F Chain F, I-Kappa-B-AlphaNF-Kappa-B Complex
Length = 213
Score = 31.2 bits (69), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 35/81 (43%), Gaps = 3/81 (3%)
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
L + PL A + + L+ +G P+ +D GN LH+ L G + T
Sbjct: 41 LQQTPLHLAVITNQPEIAEALLGAGCDPELRDFRGNTPLHLACEQGCLASVGVLTQSCTT 100
Query: 285 PASNGIL---NNDGFTPLTLS 302
P + IL N +G T L L+
Sbjct: 101 PHLHSILKATNYNGHTCLHLA 121
Score = 30.8 bits (68), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 28/88 (31%), Positives = 41/88 (46%), Gaps = 8/88 (9%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVAD 186
G T LH+ +H L +++ L DV E G +ALHLA+ N +LV+
Sbjct: 114 GHTCLHL-----ASIHGYLG--IVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSL 166
Query: 187 LIEAGANVTQRAIGSFFLPRDQQTPRPS 214
L++ GA+V R + P RPS
Sbjct: 167 LLKCGADVN-RVTYQGYSPYQLTWGRPS 193
>pdb|1SVX|A Chain A, Crystal Structure Of A Designed Selected Ankyrin Repeat
Protein In Complex With The Maltose Binding Protein
Length = 169
Score = 31.2 bits (69), Expect = 1.5, Method: Composition-based stats.
Identities = 20/84 (23%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 233 AACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILN 292
AA + +L+ +GA +A D+ G LH+ + L++ L+H ++ +
Sbjct: 21 AARAGQDDEVRILMANGADVNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDVF- 79
Query: 293 NDGFTPLTLSCQLGRADVFREMLE 316
G+TPL L+ G ++ +L+
Sbjct: 80 --GYTPLHLAAYWGHLEIVEVLLK 101
Score = 29.6 bits (65), Expect = 4.0, Method: Composition-based stats.
Identities = 29/121 (23%), Positives = 47/121 (38%), Gaps = 25/121 (20%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V + G + LHLA + E+V L++ GA+V +
Sbjct: 40 VNAADNTGTTPLHLAAYSGHLEIVEVLLKHGADVDASDV--------------------- 78
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
G PL AA + + +L+ +GA +A DS G LH+ L++ L+
Sbjct: 79 ----FGYTPLHLAAYWGHLEIVEVLLKNGADVNAMDSDGMTPLHLAAKWGYLEIVEVLLK 134
Query: 281 H 281
H
Sbjct: 135 H 135
>pdb|2Y1L|E Chain E, Caspase-8 In Complex With Darpin-8.4
pdb|2Y1L|F Chain F, Caspase-8 In Complex With Darpin-8.4
Length = 169
Score = 30.8 bits (68), Expect = 1.8, Method: Composition-based stats.
Identities = 22/84 (26%), Positives = 40/84 (47%), Gaps = 3/84 (3%)
Query: 233 AACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILN 292
AA + +L+ +GA +A+D+ G LH+ N L++ L K A ++
Sbjct: 21 AARAGRDDEVRILMANGADVNAEDASGWTPLHLAAFNGHLEIVEVLL---KNGADVNAVD 77
Query: 293 NDGFTPLTLSCQLGRADVFREMLE 316
+ G TPL L+ G ++ +L+
Sbjct: 78 HAGMTPLRLAALFGHLEIVEVLLK 101
Score = 30.8 bits (68), Expect = 2.1, Method: Composition-based stats.
Identities = 30/117 (25%), Positives = 48/117 (41%), Gaps = 31/117 (26%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V E+ G + LHLA + E+V L++ GA+V D+
Sbjct: 40 VNAEDASGWTPLHLAAFNGHLEIVEVLLKNGADVNA--------------------VDHA 79
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGY 277
G+ PL AA + + +L+ +GA +A D G+ LH+ MFG+
Sbjct: 80 GMT-----PLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAA------MFGH 125
>pdb|4A63|B Chain B, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|D Chain D, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|F Chain F, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|H Chain H, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|J Chain J, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
pdb|4A63|L Chain L, Crystal Structure Of The P73-Aspp2 Complex At 2.6a
Resolution
Length = 239
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 25/83 (30%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +ALH A+ + E+V L++ G NV D +G
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNA--------------------ADSDGWT---- 105
Query: 228 YPLSWAACCSNESVYNLLIDSGA 250
PL AA C+N V L++SGA
Sbjct: 106 -PLHCAASCNNVQVCKFLVESGA 127
>pdb|1YCS|B Chain B, P53-53bp2 Complex
Length = 239
Score = 30.8 bits (68), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 25/83 (30%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +ALH A+ + E+V L++ G NV D +G
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNA--------------------ADSDGWT---- 105
Query: 228 YPLSWAACCSNESVYNLLIDSGA 250
PL AA C+N V L++SGA
Sbjct: 106 -PLHCAASCNNVQVCKFLVESGA 127
>pdb|2B0O|E Chain E, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|F Chain F, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|G Chain G, Crystal Structure Of Uplc1 Gap Domain
pdb|2B0O|H Chain H, Crystal Structure Of Uplc1 Gap Domain
Length = 301
Score = 30.4 bits (67), Expect = 2.3, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 241 VYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPLT 300
+ + +I +G DAK + GN LH + ++ D L K A G +N G T L
Sbjct: 208 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL---KGRALVGTVNEAGETAL- 263
Query: 301 LSCQLGRADVFREMLELSCKEFWRYSNITCSAYPLN 336
D+ R+ C+E + A+PL+
Sbjct: 264 --------DIARKKHHKECEELLEQAQAGTFAFPLH 291
>pdb|1MX2|A Chain A, Structure Of F71n Mutant Of P18ink4c
pdb|1MX2|B Chain B, Structure Of F71n Mutant Of P18ink4c
Length = 168
Score = 30.4 bits (67), Expect = 2.5, Method: Composition-based stats.
Identities = 23/73 (31%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 238 NESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFT 297
N + L+ GA PD KD GN ++H LD L + A I +N+G
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGNAVIHDAARAGFLDTLQTLL---EFQADVNIEDNEGNL 105
Query: 298 PLTLSCQLGRADV 310
PL L+ + G V
Sbjct: 106 PLHLAAKEGHLRV 118
>pdb|3LVQ|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State
pdb|3LVR|E Chain E, The Crystal Structure Of Asap3 In Complex With Arf6 In
Trans State Soaked With Calcium
Length = 497
Score = 30.4 bits (67), Expect = 2.9, Method: Compositional matrix adjust.
Identities = 25/96 (26%), Positives = 40/96 (41%), Gaps = 12/96 (12%)
Query: 241 VYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPLT 300
+ + +I +G DAK + GN LH + ++ D L K A G +N G T L
Sbjct: 189 LVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLL---KGRALVGTVNEAGETAL- 244
Query: 301 LSCQLGRADVFREMLELSCKEFWRYSNITCSAYPLN 336
D+ R+ C+E + A+PL+
Sbjct: 245 --------DIARKKHHKECEELLEQAQAGTFAFPLH 272
>pdb|2VGE|A Chain A, Crystal Structure Of The C-Terminal Region Of Human Iaspp
Length = 229
Score = 29.6 bits (65), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 33/83 (39%), Gaps = 25/83 (30%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +ALH AI AN +V LI AGANV P H G
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNS----------------PDSH---------GW 88
Query: 228 YPLSWAACCSNESVYNLLIDSGA 250
PL AA C++ + L+ GA
Sbjct: 89 TPLHCAASCNDTVICMALVQHGA 111
>pdb|1AWC|B Chain B, Mouse Gabp AlphaBETA DOMAIN BOUND TO DNA
Length = 153
Score = 29.3 bits (64), Expect = 5.7, Method: Composition-based stats.
Identities = 26/100 (26%), Positives = 39/100 (39%), Gaps = 25/100 (25%)
Query: 165 EYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAY 224
++LG S LHLA Y + L+ AG + RD +T
Sbjct: 31 DWLGTSPLHLAAQYGHFSTTEVLLRAGVS------------RDARTK------------- 65
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILH 264
+ PL AA + ++ +L+ GA +AKD LH
Sbjct: 66 VDRTPLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALH 105
>pdb|2ZGG|A Chain A, Asn-Hydroxylation Stabilises The Ankyrin Repeat Domain
Fold
Length = 92
Score = 29.3 bits (64), Expect = 6.0, Method: Composition-based stats.
Identities = 16/49 (32%), Positives = 25/49 (51%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
G PL AA + V LL+++GA +A+D FG + + N D+
Sbjct: 39 GSTPLHLAARNGHLEVVKLLLEAGADVNAQDKFGKTAFDISIDNGNEDL 87
>pdb|2FV7|A Chain A, Crystal Structure Of Human Ribokinase
pdb|2FV7|B Chain B, Crystal Structure Of Human Ribokinase
Length = 331
Score = 28.9 bits (63), Expect = 7.0, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 22/41 (53%)
Query: 255 KDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDG 295
KDSFGN + + ND F Y + T ++ I+NN+G
Sbjct: 86 KDSFGNDYIENLKQNDISTEFTYQTKDAATGTASIIVNNEG 126
>pdb|4HBD|A Chain A, Crystal Structure Of Kank2 Ankyrin Repeats
Length = 276
Score = 28.9 bits (63), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 19/61 (31%), Positives = 31/61 (50%), Gaps = 4/61 (6%)
Query: 135 IICDTKLHTRLARTLLKCF----PRLSQDVVEGEEYLGASALHLAIAYANNELVADLIEA 190
+ C + H L R L F RL VV + G +ALH ++++AN +V L+++
Sbjct: 74 LACRSDAHPELVRRHLVTFRAMSARLLDYVVNIADSNGNTALHYSVSHANFPVVQQLLDS 133
Query: 191 G 191
G
Sbjct: 134 G 134
>pdb|1MX4|A Chain A, Structure Of P18ink4c (F82q)
pdb|1MX4|B Chain B, Structure Of P18ink4c (F82q)
Length = 168
Score = 28.5 bits (62), Expect = 8.8, Method: Composition-based stats.
Identities = 22/73 (30%), Positives = 32/73 (43%), Gaps = 3/73 (4%)
Query: 238 NESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFT 297
N + L+ GA PD KD G ++H +LD L + A I +N+G
Sbjct: 49 NPEIARRLLLRGANPDLKDRTGFAVIHDAARAGQLDTLQTLL---EFQADVNIEDNEGNL 105
Query: 298 PLTLSCQLGRADV 310
PL L+ + G V
Sbjct: 106 PLHLAAKEGHLRV 118
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.323 0.139 0.428
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,885,558
Number of Sequences: 62578
Number of extensions: 724945
Number of successful extensions: 1740
Number of sequences better than 100.0: 85
Number of HSP's better than 100.0 without gapping: 35
Number of HSP's successfully gapped in prelim test: 50
Number of HSP's that attempted gapping in prelim test: 1426
Number of HSP's gapped (non-prelim): 229
length of query: 550
length of database: 14,973,337
effective HSP length: 104
effective length of query: 446
effective length of database: 8,465,225
effective search space: 3775490350
effective search space used: 3775490350
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.4 bits)