RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14474
(550 letters)
>gnl|CDD|233161 TIGR00870, trp, transient-receptor-potential calcium channel
protein. The Transient Receptor Potential Ca2+ Channel
(TRP-CC) Family (TC. 1.A.4)The TRP-CC family has also
been called the store-operated calcium channel (SOC)
family. The prototypical members include the Drosophila
retinal proteinsTRP and TRPL (Montell and Rubin, 1989;
Hardie and Minke, 1993). SOC members of the family
mediate the entry of extracellular Ca2+ into cells in
responseto depletion of intracellular Ca2+ stores
(Clapham, 1996) and agonist stimulated production of
inositol-1,4,5 trisphosphate (IP3). One member of the
TRP-CCfamily, mammalian Htrp3, has been shown to form a
tight complex with the IP3 receptor (TC #1.A.3.2.1).
This interaction is apparently required for IP3
tostimulate Ca2+ release via Htrp3. The vanilloid
receptor subtype 1 (VR1), which is the receptor for
capsaicin (the ?hot? ingredient in chili peppers) and
servesas a heat-activated ion channel in the pain
pathway (Caterina et al., 1997), is also a member of
this family. The stretch-inhibitable non-selective
cation channel(SIC) is identical to the vanilloid
receptor throughout all of its first 700 residues, but
it exhibits a different sequence in its last 100
residues. VR1 and SICtransport monovalent cations as
well as Ca2+. VR1 is about 10x more permeable to Ca2+
than to monovalent ions. Ca2+ overload probably causes
cell deathafter chronic exposure to capsaicin.
(McCleskey and Gold, 1999) [Transport and binding
proteins, Cations and iron carrying compounds].
Length = 743
Score = 213 bits (543), Expect = 1e-60
Identities = 119/445 (26%), Positives = 181/445 (40%), Gaps = 44/445 (9%)
Query: 123 RGSLGETLLHVLI-----ICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIA 177
RG++G+TLLH + + L LA L+ D E G +ALHLA
Sbjct: 78 RGAVGDTLLHAISLEYVDAVEAILLHLLAAFRKSGPLELANDQYTSEFTPGITALHLAAH 137
Query: 178 YANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCS 237
N E+V L+E GA+V RA G FF+ + Y GE PL+ AAC
Sbjct: 138 RQNYEIVKLLLERGASVPARACGDFFV-----------KSQGVDSFYHGESPLNAAACLG 186
Query: 238 NESVYNLLIDSGAIPDAKDSFGNMILHMVVV-------NDKL--DMFGYALRHPKTPASN 288
+ S+ LL + A DS GN +LH++V+ ++L M+ +AL +
Sbjct: 187 SPSIVALLSEDPADILTADSLGNTLLHLLVMENEFKAEYEELSCQMYNFALSLLDKLRDS 246
Query: 289 G----ILNNDGFTPLTLSCQLGRADVFREML--ELSCKEF--WRYSNITCSAYPLNALDT 340
ILN+ G TPL L+ + GR +FR L + K+F W S Y L LD
Sbjct: 247 KELEVILNHQGLTPLKLAAKEGRIVLFRLKLAIKYKQKKFVAWPNGQQLLSLYWLEELDG 306
Query: 341 LLPDGRTNWNSALFIILNGTKEAHLDMLDGGIIQRLLEEKWKTFAQRQFMKRLLILSLHL 400
+ + ++ DM + RL + KWK F + F + L+L
Sbjct: 307 WRRKQ-SVLELIVVFVIGLKFPELSDMYLIAPLSRLGQFKWKPFIKFIFHSASYLYFLYL 365
Query: 401 LFMSLAVYFRPTDRDEPLLGG---------TDWQSIARYCFEIGTICGVVSYIIFQQGGE 451
+ + Y+RPT D + G W R E G + I Q
Sbjct: 366 IIFTSVAYYRPTRTDLRVTGLQQTPLEMLIVTWVDGLRLGEEKLIWLGGIFEYIHQLWNI 425
Query: 452 IKNQGFSSFMKQLKNEPAKLIFLISNIMILSCIPFRIMGDKKTEEAILIFAVPGSWFLLM 511
+ S ++ + P ++F+ ++L + EEA+ FA+ SW L+
Sbjct: 426 LDFGMNSFYLATFLDRPFAILFVTQAFLVL-REHWLRFDPTLIEEALFAFALVLSWLNLL 484
Query: 512 FFAGAIRLTGPFVTMVYSMITGDML 536
+ + GP M+ MI GD+L
Sbjct: 485 YIFRGNQHLGPLQIMIGRMILGDIL 509
>gnl|CDD|238125 cd00204, ANK, ankyrin repeats; ankyrin repeats mediate
protein-protein interactions in very diverse families of
proteins. The number of ANK repeats in a protein can
range from 2 to over 20 (ankyrins, for example). ANK
repeats may occur in combinations with other types of
domains. The structural repeat unit contains two
antiparallel helices and a beta-hairpin, repeats are
stacked in a superhelical arrangement; this alignment
contains 4 consecutive repeats.
Length = 126
Score = 77.8 bits (192), Expect = 3e-17
Identities = 42/143 (29%), Positives = 63/143 (44%), Gaps = 28/143 (19%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA + + E+V L+E GA+V + D +G
Sbjct: 7 GRTPLHLAASNGHLEVVKLLLENGADVNAK--------------------DNDGR----- 41
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA + + LL++ GA +A+D GN LH+ N LD+ L+H A
Sbjct: 42 TPLHLAAKNGHLEIVKLLLEKGADVNARDKDGNTPLHLAARNGNLDVVKLLLKH---GAD 98
Query: 288 NGILNNDGFTPLTLSCQLGRADV 310
+ DG TPL L+ + G +V
Sbjct: 99 VNARDKDGRTPLHLAAKNGHLEV 121
Score = 59.7 bits (145), Expect = 6e-11
Identities = 30/91 (32%), Positives = 45/91 (49%), Gaps = 3/91 (3%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL AA + V LL+++GA +AKD+ G LH+ N L++ L
Sbjct: 7 GRTPLHLAASNGHLEVVKLLLENGADVNAKDNDGRTPLHLAAKNGHLEIVKLLLEKG--- 63
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A + DG TPL L+ + G DV + +L+
Sbjct: 64 ADVNARDKDGNTPLHLAARNGNLDVVKLLLK 94
Score = 44.3 bits (105), Expect = 1e-05
Identities = 28/120 (23%), Positives = 44/120 (36%), Gaps = 33/120 (27%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVAD 186
G T LH+ H + + LL+ ++ + G + LHLA N ++V
Sbjct: 40 GRTPLHLAAKNG---HLEIVKLLLEKGADVNA-----RDKDGNTPLHLAARNGNLDVVKL 91
Query: 187 LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLI 246
L++ GA+V R D + G PL AA + V LL+
Sbjct: 92 LLKHGADVNAR--------------------DKD-----GRTPLHLAAKNGHLEVVKLLL 126
Score = 42.4 bits (100), Expect = 7e-05
Identities = 19/64 (29%), Positives = 32/64 (50%), Gaps = 3/64 (4%)
Query: 253 DAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFR 312
+A+D G LH+ N L++ L + A +NDG TPL L+ + G ++ +
Sbjct: 1 NARDEDGRTPLHLAASNGHLEVVKLLLENG---ADVNAKDNDGRTPLHLAAKNGHLEIVK 57
Query: 313 EMLE 316
+LE
Sbjct: 58 LLLE 61
Score = 28.9 bits (65), Expect = 3.1
Identities = 10/30 (33%), Positives = 15/30 (50%)
Query: 290 ILNNDGFTPLTLSCQLGRADVFREMLELSC 319
+ DG TPL L+ G +V + +LE
Sbjct: 2 ARDEDGRTPLHLAASNGHLEVVKLLLENGA 31
>gnl|CDD|205076 pfam12796, Ank_2, Ankyrin repeats (3 copies).
Length = 91
Score = 45.3 bits (108), Expect = 3e-06
Identities = 33/110 (30%), Positives = 42/110 (38%), Gaps = 27/110 (24%)
Query: 172 LHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLS 231
LHLA N ELV L+E GA+V T L
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLG-----------DTDT----------------ALH 33
Query: 232 WAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
AA N + LL++ GA +AKD GN LH+ N L++ L H
Sbjct: 34 LAARNGNLEIVKLLLEHGADVNAKDKDGNTALHLAARNGNLEIVKLLLEH 83
Score = 43.4 bits (103), Expect = 1e-05
Identities = 30/115 (26%), Positives = 43/115 (37%), Gaps = 32/115 (27%)
Query: 142 HTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGS 201
+ L + LL+ DV G+ +ALHLA N E+V L+E GA+V +
Sbjct: 9 NLELVKLLLEKGA----DVNLGDTD---TALHLAARNGNLEIVKLLLEHGADVNAKD--- 58
Query: 202 FFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKD 256
G L AA N + LL++ GA + KD
Sbjct: 59 ----------------------KDGNTALHLAARNGNLEIVKLLLEHGADINLKD 91
Score = 41.5 bits (98), Expect = 6e-05
Identities = 24/87 (27%), Positives = 40/87 (45%), Gaps = 5/87 (5%)
Query: 230 LSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG 289
L AA N + LL++ GA + D+ + LH+ N L++ L H A
Sbjct: 1 LHLAAKNGNLELVKLLLEKGADVNLGDT--DTALHLAARNGNLEIVKLLLEHG---ADVN 55
Query: 290 ILNNDGFTPLTLSCQLGRADVFREMLE 316
+ DG T L L+ + G ++ + +LE
Sbjct: 56 AKDKDGNTALHLAARNGNLEIVKLLLE 82
Score = 34.5 bits (80), Expect = 0.017
Identities = 18/69 (26%), Positives = 32/69 (46%), Gaps = 8/69 (11%)
Query: 129 TLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVADLI 188
T LH+ + + + LL+ ++ +G +ALHLA N E+V L+
Sbjct: 30 TALHLAARNG---NLEIVKLLLEHGADVNAKDKDGN-----TALHLAARNGNLEIVKLLL 81
Query: 189 EAGANVTQR 197
E GA++ +
Sbjct: 82 EHGADINLK 90
>gnl|CDD|223738 COG0666, Arp, FOG: Ankyrin repeat [General function prediction
only].
Length = 235
Score = 47.9 bits (113), Expect = 4e-06
Identities = 35/154 (22%), Positives = 60/154 (38%), Gaps = 26/154 (16%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G LH A + ++++V L+ +GA+V + T A G
Sbjct: 73 GRLPLHSAASKGDDKIVKLLLASGADVNAKDADG--------------DTPLHLAALNGN 118
Query: 228 YPLSWAACCSNESVYNLLIDSGA---IPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
P V LL+++GA + + +D GN LH +N D+ L
Sbjct: 119 PPEGNI------EVAKLLLEAGADLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGAD 172
Query: 285 PASNGILNNDGFTPLTLSCQLGRADVFREMLELS 318
P S N+ G T L + + GR ++ + +L+
Sbjct: 173 PNSR---NSYGVTALDPAAKNGRIELVKLLLDKG 203
Score = 38.3 bits (88), Expect = 0.005
Identities = 28/96 (29%), Positives = 42/96 (43%), Gaps = 5/96 (5%)
Query: 229 PLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYA-----LRHPK 283
PL AA ++ + LL+ SGA +AKD+ G+ LH+ +N L
Sbjct: 76 PLHSAASKGDDKIVKLLLASGADVNAKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGA 135
Query: 284 TPASNGILNNDGFTPLTLSCQLGRADVFREMLELSC 319
N + + DG TPL + G AD+ +LE
Sbjct: 136 DLDVNNLRDEDGNTPLHWAALNGDADIVELLLEAGA 171
Score = 35.6 bits (81), Expect = 0.041
Identities = 21/78 (26%), Positives = 37/78 (47%), Gaps = 4/78 (5%)
Query: 122 YRGSLGETLLHVLIICDTKL--HTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYA 179
+ + G+T LH+ + + +A+ LL+ L DV + G + LH A
Sbjct: 101 AKDADGDTPLHLAALNGNPPEGNIEVAKLLLEAGADL--DVNNLRDEDGNTPLHWAALNG 158
Query: 180 NNELVADLIEAGANVTQR 197
+ ++V L+EAGA+ R
Sbjct: 159 DADIVELLLEAGADPNSR 176
>gnl|CDD|222980 PHA03095, PHA03095, ankyrin-like protein; Provisional.
Length = 471
Score = 48.5 bits (116), Expect = 6e-06
Identities = 44/207 (21%), Positives = 77/207 (37%), Gaps = 44/207 (21%)
Query: 122 YRGSLGETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANN 181
+RG G+T LH+ + ++ + R LL+ DV E G + LHL + A
Sbjct: 42 FRGEYGKTPLHLYLHYSSEKVKDIVRLLLE----AGADVNAPERC-GFTPLHLYLYNATT 96
Query: 182 ELVAD-LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNES 240
V LI+AGA+V + +G PL S +
Sbjct: 97 LDVIKLLIKAGADVNAKDK-------------------------VGRTPLH--VYLSGFN 129
Query: 241 ----VYNLLIDSGAIPDAKDSFGNMILHMVVVNDK--LDMFGYALRHPKTPASNGILNND 294
V LL+ GA +A D +G L +++ + +++ + + ++
Sbjct: 130 INPKVIRLLLRKGADVNALDLYGMTPLAVLLKSRNANVELLRLLIDAGADVYAV---DDR 186
Query: 295 GFTPLTLSCQL--GRADVFREMLELSC 319
+ L Q RA + RE++ C
Sbjct: 187 FRSLLHHHLQSFKPRARIVRELIRAGC 213
Score = 35.8 bits (83), Expect = 0.059
Identities = 51/197 (25%), Positives = 77/197 (39%), Gaps = 27/197 (13%)
Query: 122 YRGSLGETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAI--AYA 179
+ +G T LHV + ++ ++ R LL R DV + Y G + L + + A
Sbjct: 112 AKDKVGRTPLHVYL-SGFNINPKVIRLLL----RKGADVNALDLY-GMTPLAVLLKSRNA 165
Query: 180 NNELVADLIEAGANVTQRAIGSFFLPRDQ--QTPRPS---------RHTDYEGLAYLGEY 228
N EL+ LI+AGA+V F Q+ +P D LG
Sbjct: 166 NVELLRLLIDAGADVYAVDD-RFRSLLHHHLQSFKPRARIVRELIRAGCDPAATDMLGNT 224
Query: 229 PLSWAA---CCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
PL A C V LLI G +A++ +G LH V + +
Sbjct: 225 PLHSMATGSSCKRSLVLPLLIA-GISINARNRYGQTPLHYAAVFNNPRACRRLI---ALG 280
Query: 286 ASNGILNNDGFTPLTLS 302
A +++DG TPL+L
Sbjct: 281 ADINAVSSDGNTPLSLM 297
Score = 31.1 bits (71), Expect = 1.5
Identities = 38/157 (24%), Positives = 57/157 (36%), Gaps = 39/157 (24%)
Query: 129 TLLHVLIICDT-KLHTRLARTL--LKCFPRLSQDVVEGEEYLGASALHLAIAYAN--NEL 183
+LLH + K R+ R L C P + LG + LH ++ L
Sbjct: 189 SLLH--HHLQSFKPRARIVRELIRAGCDPA-------ATDMLGNTPLHSMATGSSCKRSL 239
Query: 184 VADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYN 243
V L+ AG ++ R ++ G+ PL +AA +N
Sbjct: 240 VLPLLIAGISINAR---------NR----------------YGQTPLHYAAVFNNPRACR 274
Query: 244 LLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
LI GA +A S GN L ++V N+ AL
Sbjct: 275 RLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALA 311
Score = 30.8 bits (70), Expect = 1.9
Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 22/101 (21%)
Query: 167 LGASALHLAIAYANNELVADLIEAGANVTQRA-----------------IGSFFLPRDQQ 209
G + LH A + N LI GA++ + L +
Sbjct: 256 YGQTPLHYAAVFNNPRACRRLIALGADINAVSSDGNTPLSLMVRNNNGRAVRAALAK--- 312
Query: 210 TPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGA 250
PS T L + + V +++
Sbjct: 313 --NPSAETVAATLNTASVAGGDIPSDATRLCVAKVVLRGAF 351
>gnl|CDD|200936 pfam00023, Ank, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities. Repeats 13-24 are especially active,
with known sites of interaction for the Na/K ATPase,
Cl/HCO(3) anion exchanger, voltage-gated sodium channel,
clathrin heavy chain and L1 family cell adhesion
molecules. The ANK repeats are found to form a
contiguous spiral stack such that ion transporters like
the anion exchanger associate in a large central cavity
formed by the ANK repeat spiral, while clathrin and cell
adhesion molecules associate with specific regions
outside this cavity.
Length = 33
Score = 37.5 bits (88), Expect = 3e-04
Identities = 14/30 (46%), Positives = 19/30 (63%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQR 197
G + LHLA + E+V L+EAGA+V R
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNAR 31
Score = 33.7 bits (78), Expect = 0.010
Identities = 12/31 (38%), Positives = 18/31 (58%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKD 256
G PL AA + V LL+++GA +A+D
Sbjct: 2 GNTPLHLAARNGHLEVVKLLLEAGADVNARD 32
Score = 27.9 bits (63), Expect = 1.1
Identities = 10/23 (43%), Positives = 15/23 (65%)
Query: 294 DGFTPLTLSCQLGRADVFREMLE 316
DG TPL L+ + G +V + +LE
Sbjct: 1 DGNTPLHLAARNGHLEVVKLLLE 23
>gnl|CDD|222939 PHA02878, PHA02878, ankyrin repeat protein; Provisional.
Length = 477
Score = 37.2 bits (86), Expect = 0.020
Identities = 27/109 (24%), Positives = 43/109 (39%), Gaps = 25/109 (22%)
Query: 159 DVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTD 218
D+ + + G +ALH A + L L+ GANV +
Sbjct: 159 DINMKDRHKGNTALHYATENKDQRLTELLLSYGANVNIPDKTN----------------- 201
Query: 219 YEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVV 267
PL A N+ + ++L+++GA DA+D GN LH+ V
Sbjct: 202 --------NSPLHHAVKHYNKPIVHILLENGASTDARDKCGNTPLHISV 242
>gnl|CDD|222984 PHA03100, PHA03100, ankyrin repeat protein; Provisional.
Length = 422
Score = 37.0 bits (86), Expect = 0.024
Identities = 16/56 (28%), Positives = 30/56 (53%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
G PL +A +N L+D GA P+ + +G+ LH+ ++N+ ++F L +
Sbjct: 192 GFTPLHYAVYNNNPEFVKYLLDLGANPNLVNKYGDTPLHIAILNNNKEIFKLLLNN 247
Score = 33.5 bits (77), Expect = 0.29
Identities = 39/225 (17%), Positives = 72/225 (32%), Gaps = 52/225 (23%)
Query: 135 IICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVADLIEAGANV 194
I TK + +K + L+LA N ++V L++ GA++
Sbjct: 4 YIVLTK-SRIIKVKNIKYIIMEDDLNDYSYKKPVLP-LYLAKEARNIDVVKILLDNGADI 61
Query: 195 TQRAIGSF-FLPRDQQTPRPSRH------------TDYEGLAYLGEYPLSWAAC-CSNE- 239
+ L + G PL +A SN
Sbjct: 62 NSSTKNNSTPLHYLSNIKYNLTDVKEIVKLLLEYGANVNAPDNNGITPLLYAISKKSNSY 121
Query: 240 SVYNLLIDSGAIPDAKDSFGNMILHMVV-------------------VN--DKLDMFGYA 278
S+ L+D+GA + K+S G +LH+ + +N ++++
Sbjct: 122 SIVEYLLDNGANVNIKNSDGENLLHLYLESNKIDLKILKLLIDKGVDINAKNRVNYL--- 178
Query: 279 LRHPKTPASNGIL----NNDGFTPLTLSCQLGRADVFREMLELSC 319
S G+ + GFTPL + + + +L+L
Sbjct: 179 -------LSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDLGA 216
Score = 33.1 bits (76), Expect = 0.43
Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 3/74 (4%)
Query: 243 NLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPLTLS 302
N L+ G + KD +G LH V N+ + Y L A+ ++N G TPL ++
Sbjct: 176 NYLLSYGVPINIKDVYGFTPLHYAVYNNNPEFVKYLLDL---GANPNLVNKYGDTPLHIA 232
Query: 303 CQLGRADVFREMLE 316
++F+ +L
Sbjct: 233 ILNNNKEIFKLLLN 246
>gnl|CDD|206028 pfam13857, Ank_5, Ankyrin repeats (many copies).
Length = 56
Score = 31.6 bits (72), Expect = 0.081
Identities = 15/58 (25%), Positives = 24/58 (41%), Gaps = 3/58 (5%)
Query: 244 LLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPLTL 301
LL +A D GN LH+ L++ + L+ + ++DG T L L
Sbjct: 1 LLEHGPIDLNATDGNGNTPLHLAAKYGALELVQWLLKP---GVDLNLRDSDGLTALDL 55
Score = 26.5 bits (59), Expect = 5.8
Identities = 14/45 (31%), Positives = 21/45 (46%), Gaps = 4/45 (8%)
Query: 149 LLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVADLIEAGAN 193
LL+ P + + G + LHLA Y ELV L++ G +
Sbjct: 1 LLEHGP----IDLNATDGNGNTPLHLAAKYGALELVQWLLKPGVD 41
>gnl|CDD|197603 smart00248, ANK, ankyrin repeats. Ankyrin repeats are about 33
amino acids long and occur in at least four consecutive
copies. They are involved in protein-protein
interactions. The core of the repeat seems to be an
helix-loop-helix structure.
Length = 30
Score = 30.2 bits (69), Expect = 0.17
Identities = 11/28 (39%), Positives = 17/28 (60%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVT 195
G + LHLA N E+V L++ GA++
Sbjct: 2 GRTPLHLAAENGNLEVVKLLLDKGADIN 29
>gnl|CDD|205784 pfam13606, Ank_3, Ankyrin repeat. Ankyrins are multifunctional
adaptors that link specific proteins to the
membrane-associated, spectrin- actin cytoskeleton. This
repeat-domain is a 'membrane-binding' domain of up to 24
repeated units, and it mediates most of the protein's
binding activities.
Length = 30
Score = 29.9 bits (68), Expect = 0.22
Identities = 13/27 (48%), Positives = 17/27 (62%)
Query: 168 GASALHLAIAYANNELVADLIEAGANV 194
G + LHLA N ELV L+E GA++
Sbjct: 2 GNTPLHLAARNGNLELVKLLLEHGADI 28
>gnl|CDD|222277 pfam13637, Ank_4, Ankyrin repeats (many copies).
Length = 54
Score = 30.3 bits (69), Expect = 0.23
Identities = 13/51 (25%), Positives = 20/51 (39%)
Query: 229 PLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYAL 279
L AA + L++ G + D GN LH+ N L++ L
Sbjct: 4 ALHKAAISGRLELVKYLLEKGVDINRTDEDGNTALHIAAENGNLEVLKLLL 54
Score = 28.0 bits (63), Expect = 1.7
Identities = 15/58 (25%), Positives = 23/58 (39%), Gaps = 9/58 (15%)
Query: 170 SALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTP--RPSRHTDYEGLAYL 225
+ALH A ELV L+E G ++ + D T + + + E L L
Sbjct: 3 TALHKAAISGRLELVKYLLEKGVDINRT-------DEDGNTALHIAAENGNLEVLKLL 53
>gnl|CDD|165205 PHA02874, PHA02874, ankyrin repeat protein; Provisional.
Length = 434
Score = 33.4 bits (76), Expect = 0.30
Identities = 32/130 (24%), Positives = 45/130 (34%), Gaps = 32/130 (24%)
Query: 172 LHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLS 231
LH AI + E + L E GA+V G YP+
Sbjct: 128 LHYAIKKGDLESIKMLFEYGADVNIEDDN-------------------------GCYPIH 162
Query: 232 WAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGIL 291
A + + LL++ GA + KD+ G LH + H N I+
Sbjct: 163 IAIKHNFFDIIKLLLEKGAYANVKDNNGESPLHNAAEYGDYACIKLLIDH-----GNHIM 217
Query: 292 N--NDGFTPL 299
N +GFTPL
Sbjct: 218 NKCKNGFTPL 227
>gnl|CDD|140343 PTZ00322, PTZ00322,
6-phosphofructo-2-kinase/fructose-2,6-biphosphatase;
Provisional.
Length = 664
Score = 33.3 bits (76), Expect = 0.32
Identities = 22/79 (27%), Positives = 36/79 (45%), Gaps = 3/79 (3%)
Query: 244 LLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPLTLSC 303
+L+ GA P+ +D G LH+ N + + L P +L+ DG TPL L+
Sbjct: 100 ILLTGGADPNCRDYDGRTPLHIACANGHVQVVRVLLEFGADPT---LLDKDGKTPLELAE 156
Query: 304 QLGRADVFREMLELSCKEF 322
+ G +V + + S F
Sbjct: 157 ENGFREVVQLLSRHSQCHF 175
>gnl|CDD|165206 PHA02875, PHA02875, ankyrin repeat protein; Provisional.
Length = 413
Score = 32.3 bits (73), Expect = 0.64
Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 3/91 (3%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL A + LLI GA PD ++ LH+ V+ + + H
Sbjct: 102 GMTPLHLATILKKLDIMKLLIARGADPDIPNTDKFSPLHLAVMMGDIKGIELLIDH---K 158
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
A I + G TPL ++ G + + +L+
Sbjct: 159 ACLDIEDCCGCTPLIIAMAKGDIAICKMLLD 189
Score = 31.5 bits (71), Expect = 1.3
Identities = 25/92 (27%), Positives = 38/92 (41%), Gaps = 2/92 (2%)
Query: 224 YLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPK 283
Y G P+ A + LL+ GAIPD K LH V + L K
Sbjct: 33 YDGISPIKLAMKFRDSEAIKLLMKHGAIPDVKYPDIESELHDAVEEGDVKAVEELLDLGK 92
Query: 284 TPASNGILNNDGFTPLTLSCQLGRADVFREML 315
++ + DG TPL L+ L + D+ + ++
Sbjct: 93 F--ADDVFYKDGMTPLHLATILKKLDIMKLLI 122
>gnl|CDD|238242 cd00423, Pterin_binding, Pterin binding enzymes. This family
includes dihydropteroate synthase (DHPS) and
cobalamin-dependent methyltransferases such as
methyltetrahydrofolate, corrinoid iron-sulfur protein
methyltransferase (MeTr) and methionine synthase (MetH).
DHPS, a functional homodimer, catalyzes the
condensation of p-aminobenzoic acid (pABA) in the de
novo biosynthesis of folate, which is an essential
cofactor in both nucleic acid and protein biosynthesis.
Prokaryotes (and some lower eukaryotes) must synthesize
folate de novo, while higher eukaryotes are able to
utilize dietary folate and therefore lack DHPS.
Sulfonamide drugs, which are substrate analogs of pABA,
target DHPS. Cobalamin-dependent methyltransferases
catalyze the transfer of a methyl group via a methyl-
cob(III)amide intermediate. These include MeTr, a
functional heterodimer, and the folate binding domain of
MetH.
Length = 258
Score = 31.1 bits (71), Expect = 1.3
Identities = 22/70 (31%), Positives = 32/70 (45%), Gaps = 17/70 (24%)
Query: 53 GQVEVEKLIKEQFG---VLMYNDGTGQ-----------VIDKTEYLKWRYRDSDQFVIPV 98
G E+ L E +G VLM+ DGT Q V + E+L+ R + + IP
Sbjct: 108 GDPEMAPLAAE-YGAPVVLMHMDGTPQTMQNNPYYADVVDEVVEFLEERVEAATEAGIPP 166
Query: 99 EKVLSPLDPL 108
E ++ LDP
Sbjct: 167 EDII--LDPG 174
>gnl|CDD|165195 PHA02859, PHA02859, ankyrin repeat protein; Provisional.
Length = 209
Score = 30.9 bits (70), Expect = 1.3
Identities = 25/92 (27%), Positives = 37/92 (40%), Gaps = 21/92 (22%)
Query: 178 YANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCS 237
N E++ LIE GA+V + T L+ L Y LS+
Sbjct: 63 KVNVEILKFLIENGADVNFK-------------------TRDNNLSALHHY-LSFNKNV- 101
Query: 238 NESVYNLLIDSGAIPDAKDSFGNMILHMVVVN 269
+ +LIDSG+ +D G +LHM + N
Sbjct: 102 EPEILKILIDSGSSITEEDEDGKNLLHMYMCN 133
>gnl|CDD|169276 PRK08201, PRK08201, hypothetical protein; Provisional.
Length = 456
Score = 31.3 bits (71), Expect = 1.6
Identities = 25/100 (25%), Positives = 43/100 (43%), Gaps = 29/100 (29%)
Query: 104 PLDPLSKW---------RDHEACWQMQYRGSL---GETLLHVLIICDTKLHTRLARTLLK 151
P+DPL+ W RD ++ RG+ G+ +H+ + LLK
Sbjct: 92 PVDPLNLWETPPFEPTIRDG----KLYARGASDDKGQVFMHLKAV----------EALLK 137
Query: 152 CFPRLSQDV---VEGEEYLGASALHLAIAYANNELVADLI 188
L +V +EGEE +G+ L + ++L AD++
Sbjct: 138 VEGTLPVNVKFCIEGEEEIGSPNLDSFVEEEKDKLAADVV 177
>gnl|CDD|224724 COG1811, COG1811, Uncharacterized membrane protein, possible Na+
channel or pump [General function prediction only].
Length = 228
Score = 30.3 bits (69), Expect = 2.1
Identities = 16/65 (24%), Positives = 26/65 (40%), Gaps = 10/65 (15%)
Query: 457 FSSFMKQLKNEPAKLIFLIS---NIMILSCIPFRIMGDKKTEEA----ILIFAVPGSWFL 509
F++ + L L+ + ++IL+ I RI+G KK L+ A S
Sbjct: 167 FAAQILPLTTPD--LMADFTAVGGLLILA-IGLRILGLKKFRVGNMLPALLLAPLISALW 223
Query: 510 LMFFA 514
FF
Sbjct: 224 YAFFL 228
>gnl|CDD|227108 COG4767, VanZ, Glycopeptide antibiotics resistance protein [Defense
mechanisms].
Length = 199
Score = 30.0 bits (68), Expect = 2.3
Identities = 25/154 (16%), Positives = 50/154 (32%), Gaps = 28/154 (18%)
Query: 387 RQFMKRLLILSLHLLFMSLAVYFRPTDRDEPLLGGTDWQSIARYCFEIGTICGVVSYIIF 446
+F +L++ LLF S + +A F I + ++ +F
Sbjct: 3 LRFFILILVVLYALLFKSKQLKKG------------LKSVLATLSF-IVYLIVLILLTLF 49
Query: 447 QQGGEIKNQGFSSFMKQLKNEPAKLIFLISNIMILSCIPFRIMGDKKTEEAILIFAVPGS 506
+L P K +++ IPF +GD + F + G+
Sbjct: 50 ----------PLILFAKLLWGPKKNRLGS----LINLIPFNSIGDFLGLSSTGFFQILGN 95
Query: 507 WFLLMFFAGAIRLTGP-FVTMVYSMITGDMLTLA 539
L + F + +++ G +L+L
Sbjct: 96 IILFIPFGFLLPTLFKRLSKKKKTLLLGFLLSLF 129
>gnl|CDD|182431 PRK10403, PRK10403, transcriptional regulator NarP; Provisional.
Length = 215
Score = 29.8 bits (67), Expect = 3.2
Identities = 23/57 (40%), Positives = 28/57 (49%), Gaps = 8/57 (14%)
Query: 132 HVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVADLI 188
VLI+ D L R R LL+ P +VV E GASA+ LA N L D+I
Sbjct: 8 QVLIVDDHPLMRRGVRQLLELDPGF--EVV-AEAGDGASAIDLA-----NRLDPDVI 56
>gnl|CDD|188239 TIGR02650, RNase_Z_T_toga, ribonuclease Z, Thermotoga type.
Members of this protein family are ribonuclease Z as
found in the genus Thermotoga, where the enzyme cleaves
after the CCA, in contrast to the activities
characterized for other enzymes also designated
ribonuclease Z. In other systems, cleavage occurs
5-prime to the location of the CCA sequence, and CCA is
added subsequently. A species may lack ribonuclease Z if
all tRNA genes encode the CCA sequence, or if the CCA is
exposed by exonuclease activity rather than endonuclease
activity. Note that members of this sequence family
differ considerably from the majority of RNase Z
sequences [Transcription, RNA processing].
Length = 277
Score = 30.0 bits (67), Expect = 3.3
Identities = 11/30 (36%), Positives = 19/30 (63%)
Query: 368 LDGGIIQRLLEEKWKTFAQRQFMKRLLILS 397
LD I RL++EK + F ++ K++L +S
Sbjct: 158 LDSKEIARLVKEKGRDFVTEEYHKKILTIS 187
>gnl|CDD|234389 TIGR03903, TOMM_kin_cyc, TOMM system kinase/cyclase fusion protein.
This model represents proteins of 1350 in length, in
multiple species of Burkholderia, in Acidovorax avenae
subsp. citrulli AAC00-1 and Delftia acidovorans SPH-1,
and in multiple copies in Sorangium cellulosum, in
genomic neighborhoods that include a
cyclodehydratase/docking scaffold fusion protein
(TIGR03882) and a member of the thiazole/oxazole
modified metabolite (TOMM) precursor family TIGR03795.
It has a kinase domain in the N-terminal 300 amino
acids, followed by a cyclase homology domain, followed
by regions without named domain definitions. It is a
probable bacteriocin-like metabolite biosynthesis
protein [Cellular processes, Toxin production and
resistance].
Length = 1266
Score = 30.2 bits (68), Expect = 3.8
Identities = 19/57 (33%), Positives = 23/57 (40%), Gaps = 6/57 (10%)
Query: 142 HTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRA 198
H R+A LL FPR V ALH A A A + V I+A R+
Sbjct: 854 HERVAAALLARFPR-----VVAARP-DLLALHFARADAFAQAVPYGIKAARRALMRS 904
>gnl|CDD|239324 cd03026, AhpF_NTD_C, TRX-GRX-like family, Alkyl hydroperoxide
reductase F subunit (AhpF) N-terminal domain (NTD)
subfamily, C-terminal TRX-fold subdomain; AhpF is a
homodimeric flavoenzyme which catalyzes the
NADH-dependent reduction of the peroxiredoxin AhpC,
which then reduces hydrogen peroxide and organic
hydroperoxides. AhpF contains an NTD containing two
contiguous TRX-fold subdomains similar to Pyrococcus
furiosus protein disulfide oxidoreductase (PfPDO). It
also contains a catalytic core similar to TRX reductase
containing FAD and NADH binding domains with an active
site disulfide. The proposed mechanism of action of AhpF
is similar to a TRX/TRX reductase system. The flow of
reducing equivalents goes from NADH -> catalytic core of
AhpF -> NTD of AhpF -> AhpC -> peroxide substrates. The
catalytic CXXC motif of the NTD of AhpF is contained in
its C-terminal TRX subdomain.
Length = 89
Score = 27.6 bits (62), Expect = 4.4
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 238 NESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFG 276
N ++ + +ID D + G M + + +N +L FG
Sbjct: 41 NPNIEHEMIDGALFQDEVEERGIMSVPAIFLNGELFGFG 79
>gnl|CDD|227346 COG5013, NarG, Nitrate reductase alpha subunit [Energy production
and conversion].
Length = 1227
Score = 29.7 bits (67), Expect = 4.8
Identities = 9/32 (28%), Positives = 15/32 (46%), Gaps = 5/32 (15%)
Query: 85 KWRYRDSDQFVIPVEKVLSPLDPLSKWRDHEA 116
+WRY +++LSPL S++ H
Sbjct: 615 QWRYEKV-----TADELLSPLADRSRYSGHLI 641
>gnl|CDD|165231 PHA02917, PHA02917, ankyrin-like protein; Provisional.
Length = 661
Score = 29.6 bits (66), Expect = 5.0
Identities = 18/63 (28%), Positives = 31/63 (49%), Gaps = 2/63 (3%)
Query: 136 ICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVADLIEAGANVT 195
+CD + T+ C P L + + G + LH A+ Y LV+ L+E+G++V
Sbjct: 422 LCDMSYACPILSTINICLPYLKD--INMIDKRGETLLHKAVRYNKQSLVSLLLESGSDVN 479
Query: 196 QRA 198
R+
Sbjct: 480 IRS 482
>gnl|CDD|234015 TIGR02788, VirB11, P-type DNA transfer ATPase VirB11. The VirB11
protein is found in the vir locus of Agrobacterium Ti
plasmids where it is involved in the type IV secretion
system for DNA transfer. VirB11 is believed to be an
ATPase. VirB11 is a homolog of the P-like conjugation
system TrbB protein and the Flp pilus sytem protein
TadA.
Length = 308
Score = 28.9 bits (65), Expect = 6.6
Identities = 25/103 (24%), Positives = 40/103 (38%), Gaps = 13/103 (12%)
Query: 242 YNLLIDSGAIPDAKDSFGNMILHMVVVNDKL----DMFGYALRHP-KTP--ASNGILNND 294
N++I SG K +F ++ + ++++ D L HP S G
Sbjct: 145 KNIII-SGGTGSGKTTFLKSLVDEIPKDERIITIEDTREIFLPHPNYVHLFYSKGGQGLA 203
Query: 295 GFTPLTL--SCQLGRADVFREML-ELSCKEFWRYSNITCSAYP 334
TP L SC R D R +L EL E + + + +P
Sbjct: 204 KVTPKDLLQSCLRMRPD--RIILGELRGDEAFDFIRAVNTGHP 244
>gnl|CDD|216292 pfam01086, Clathrin_lg_ch, Clathrin light chain.
Length = 225
Score = 28.6 bits (64), Expect = 7.2
Identities = 7/19 (36%), Positives = 13/19 (68%)
Query: 413 DRDEPLLGGTDWQSIARYC 431
+RD+ GT+W+ +A+ C
Sbjct: 175 ERDDFSSPGTEWERVAKLC 193
>gnl|CDD|165256 PHA02946, PHA02946, ankyin-like protein; Provisional.
Length = 446
Score = 28.9 bits (64), Expect = 8.3
Identities = 23/92 (25%), Positives = 41/92 (44%), Gaps = 1/92 (1%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G YPL A+ +N + +L+ GA P+A D L+ + D + L
Sbjct: 72 GNYPLHIASKINNNRIVAMLLTHGADPNACDKQHKTPLYYLSGTDDEVIERINLLVQYGA 131
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLEL 317
N ++ +G PL L+C VF++++ +
Sbjct: 132 KINNSVDEEGCGPL-LACTDPSERVFKKIMSI 162
>gnl|CDD|233317 TIGR01218, Gpos_tandem_5TM, tandem five-transmembrane protein.
Members of this family of proteins, with average length
of 210, have no invariant residues but five predicted
transmembrane segments. Strangely, most members occur in
groups of consecutive paralogous genes. A striking
example is a set of eleven encoded consecutively,
head-to-tail, in Staphylococcus aureus strain COL.
Length = 208
Score = 28.3 bits (64), Expect = 9.0
Identities = 9/44 (20%), Positives = 16/44 (36%)
Query: 470 KLIFLISNIMILSCIPFRIMGDKKTEEAILIFAVPGSWFLLMFF 513
++FL + LS F + + E IL+ F +
Sbjct: 149 FILFLYIFFLGLSIFLFYLFINNGGENIILVINGIIFLFFFLLI 192
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.323 0.139 0.428
Gapped
Lambda K H
0.267 0.0786 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 28,601,991
Number of extensions: 2871521
Number of successful extensions: 2513
Number of sequences better than 10.0: 1
Number of HSP's gapped: 2477
Number of HSP's successfully gapped: 67
Length of query: 550
Length of database: 10,937,602
Length adjustment: 102
Effective length of query: 448
Effective length of database: 6,413,494
Effective search space: 2873245312
Effective search space used: 2873245312
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (27.2 bits)