RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14474
(550 letters)
>2pnn_A Transient receptor potential cation channel subfa member 1; TRPV1,
ankyrin repeat domain, transport protein; HET: ATP;
2.70A {Rattus norvegicus} PDB: 2nyj_A*
Length = 273
Score = 147 bits (373), Expect = 9e-41
Identities = 60/241 (24%), Positives = 89/241 (36%), Gaps = 34/241 (14%)
Query: 98 VEKVLSPLDPLSKWRDHEACWQMQYRGSLGETLLHVLIICDTKLHTRLARTLLK------ 151
+++ S L L + + + + G+T L ++ LL
Sbjct: 26 CQELESLLPFLQRSKKRLTDSEFK-DPETGKTCLLKAMLNLHNGQNDTIALLLDVARKTD 84
Query: 152 CFPRLSQDVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTP 211
+ Y G +ALH+AI N LV L+E GA+V A G FF
Sbjct: 85 SLKQFVNASYTDSYYKGQTALHIAIERRNMTLVTLLVENGADVQAAANGDFF-------- 136
Query: 212 RPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSG---AIPDAKDSFGNMILHMVVV 268
+ T Y GE PLS AAC + ++ L+ + A A+DS GN +LH +V
Sbjct: 137 ---KKTKGRPGFYFGELPLSLAACTNQLAIVKFLLQNSWQPADISARDSVGNTVLHALVE 193
Query: 269 NDKLD---------MFGYALRHPK----TPASNGILNNDGFTPLTLSCQLGRADVFREML 315
M+ L T I N G TPL L+ G+ V +L
Sbjct: 194 VADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLALAASSGKIGVLAYIL 253
Query: 316 E 316
+
Sbjct: 254 Q 254
Score = 30.5 bits (69), Expect = 1.1
Identities = 18/80 (22%), Positives = 36/80 (45%), Gaps = 8/80 (10%)
Query: 123 RGSLGETLLHVLI------ICDTKLHTRLARTLLKCFPRL--SQDVVEGEEYLGASALHL 174
R S+G T+LH L+ + +TK T + +L +L + + E G + L L
Sbjct: 180 RDSVGNTVLHALVEVADNTVDNTKFVTSMYNEILILGAKLHPTLKLEEITNRKGLTPLAL 239
Query: 175 AIAYANNELVADLIEAGANV 194
A + ++A +++ +
Sbjct: 240 AASSGKIGVLAYILQREIHE 259
Score = 28.2 bits (63), Expect = 7.3
Identities = 10/76 (13%), Positives = 17/76 (22%), Gaps = 8/76 (10%)
Query: 249 GAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGI-----LNNDGFTPL---T 300
A + + V L + G T L
Sbjct: 3 SAGEKPPRLYDRRSIFDAVAQSNCQELESLLPFLQRSKKRLTDSEFKDPETGKTCLLKAM 62
Query: 301 LSCQLGRADVFREMLE 316
L+ G+ D +L+
Sbjct: 63 LNLHNGQNDTIALLLD 78
>2etb_A Transient receptor potential cation channel subfamily V member 2;
TRPV2, ankyrin repeat domain, transport protein; 1.65A
{Rattus norvegicus} PDB: 2eta_A 2etc_A 2f37_A
Length = 256
Score = 143 bits (363), Expect = 1e-39
Identities = 65/241 (26%), Positives = 96/241 (39%), Gaps = 35/241 (14%)
Query: 98 VEKVLSPLDPLSKWRDHEACWQMQYRGSLGETLLHVLIICDTKLHTRLARTLLKCFPR-- 155
E++ L+ L +W GS G+T L ++ LL+
Sbjct: 15 PEELTGLLEYL-RWNSKYLTDSAYTEGSTGKTCLMKAVLNLQDGVNACIMPLLQIDKDSG 73
Query: 156 ----LSQDVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTP 211
L E Y G SALH+AI + + V L+E GA+V RA G FF
Sbjct: 74 NPKPLVNAQCTDEFYQGHSALHIAIEKRSLQCVKLLVENGADVHLRACGRFFQKHQG--- 130
Query: 212 RPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSG---AIPDAKDSFGNMILHMVVV 268
Y GE PLS AAC V L+++ A +A DS GN +LH +V+
Sbjct: 131 ---------TCFYFGELPLSLAACTKQWDVVTYLLENPHQPASLEATDSLGNTVLHALVM 181
Query: 269 NDK---------LDMFGYALRHPKTPASNG----ILNNDGFTPLTLSCQLGRADVFREML 315
+ M+ L+ I N+ G TPL L+ + G+ ++FR +L
Sbjct: 182 IADNSPENSALVIHMYDGLLQMGARLCPTVQLEEISNHQGLTPLKLAAKEGKIEIFRHIL 241
Query: 316 E 316
+
Sbjct: 242 Q 242
Score = 36.3 bits (84), Expect = 0.016
Identities = 13/101 (12%), Positives = 27/101 (26%), Gaps = 25/101 (24%)
Query: 160 VVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDY 219
V+ + SAL + + ++ A L ++
Sbjct: 180 VMIADNSPENSALVIHMYDGLLQMGARLCPTVQLEEIS--------------------NH 219
Query: 220 EGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGN 260
+GL PL AA ++ ++ A +
Sbjct: 220 QGLT-----PLKLAAKEGKIEIFRHILQREFSGAAAHHHHH 255
>3jxi_A Vanilloid receptor-related osmotically activated protein; ankyrin
repeats, ANK repeat, ION transport, ionic channel, R
transmembrane, transport; 2.30A {Gallus gallus} PDB:
3jxj_A
Length = 260
Score = 142 bits (360), Expect = 4e-39
Identities = 56/216 (25%), Positives = 87/216 (40%), Gaps = 33/216 (15%)
Query: 123 RGSLGETLLHVLIICDTKLHTRLARTLLKCFPR------LSQDVVEGEEYLGASALHLAI 176
S G+T L ++ + LL + Y G +ALH+AI
Sbjct: 42 EPSTGKTCLPKALLNLSAGRNDTIPILLDIAEKTGNMREFINSPFRDVYYRGQTALHIAI 101
Query: 177 AYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACC 236
V L+E GA+V +A G FF P+D+ G Y GE PLS AAC
Sbjct: 102 ERRCKHYVELLVEKGADVHAQARGRFFQPKDE-----------GGYFYFGELPLSLAACT 150
Query: 237 SNESVYNLLIDSG---AIPDAKDSFGNMILHMVV---------VNDKLDMFGYALRH--- 281
+ + + L ++G A +DS GN +LH +V M+ L
Sbjct: 151 NQPHIVHYLTENGHKQADLRRQDSRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAK 210
Query: 282 -PKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
+LNNDG +PL ++ + G+ +F+ ++
Sbjct: 211 LFPDTNLEALLNNDGLSPLMMAAKTGKIGIFQHIIR 246
Score = 46.7 bits (111), Expect = 8e-06
Identities = 24/173 (13%), Positives = 51/173 (29%), Gaps = 44/173 (25%)
Query: 171 ALHLAIAYANNE----LVADLIEAGANVT-----QRAIGSFFL----------------- 204
L ++ + + L++ L+ +T + + G L
Sbjct: 8 ILFDIVSRGSPDGLEGLLSFLLTHKKRLTDEEFREPSTGKTCLPKALLNLSAGRNDTIPI 67
Query: 205 ----PRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDS--- 257
R ++ + + Y G+ L A + LL++ GA A+
Sbjct: 68 LLDIAEKTGNMREFINSPFRDVYYRGQTALHIAIERRCKHYVELLVEKGADVHAQARGRF 127
Query: 258 -----------FGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPL 299
FG + L + ++ + Y + A ++ G T L
Sbjct: 128 FQPKDEGGYFYFGELPLSLAACTNQPHIVHYLTENGHKQADLRRQDSRGNTVL 180
Score = 36.7 bits (85), Expect = 0.014
Identities = 21/140 (15%), Positives = 38/140 (27%), Gaps = 33/140 (23%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANN----- 181
GE L + + + L + D+ + G + LH +A A+N
Sbjct: 140 GELPLSLAACTN---QPHIVHYLTEN-GHKQADLRRQDSR-GNTVLHALVAIADNTRENT 194
Query: 182 ----ELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCS 237
++ L+ A + L D +P L AA
Sbjct: 195 KFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSP------------------LMMAAKTG 236
Query: 238 NESVYNLLIDSGA-IPDAKD 256
++ +I A
Sbjct: 237 KIGIFQHIIRREIADAAAHH 256
Score = 33.6 bits (77), Expect = 0.11
Identities = 18/78 (23%), Positives = 27/78 (34%), Gaps = 8/78 (10%)
Query: 125 SLGETLLHVLIIC------DTKLHTRLARTLLKCFPRLSQDVVEGEE--YLGASALHLAI 176
S G T+LH L+ +TK T++ LL +L D G S L +A
Sbjct: 174 SRGNTVLHALVAIADNTRENTKFVTKMYDLLLIKCAKLFPDTNLEALLNNDGLSPLMMAA 233
Query: 177 AYANNELVADLIEAGANV 194
+ +I
Sbjct: 234 KTGKIGIFQHIIRREIAD 251
>2rfa_A Transient receptor potential cation channel subfa member 6; TRPV6,
ankyrin reapeat, ANK RE calcium channel, calcium
transport, calmodulin-binding; 1.70A {Mus musculus}
Length = 232
Score = 96.1 bits (240), Expect = 9e-23
Identities = 65/204 (31%), Positives = 99/204 (48%), Gaps = 28/204 (13%)
Query: 123 RGSLGETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNE 182
RG++GET LH+ + D + A L++ P L + + E Y G +ALH+A+ N
Sbjct: 33 RGAMGETALHIAALYD---NLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVN 89
Query: 183 LVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVY 242
LV L+ GA+V+ RA GS F H L Y GE+PLS+AAC +E +
Sbjct: 90 LVRALLARGASVSARATGSVF------------HYRPHNLIYYGEHPLSFAACVGSEEIV 137
Query: 243 NLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG----------ILN 292
LLI+ GA A+DS GN +LH++++ A + S + N
Sbjct: 138 RLLIEHGADIRAQDSLGNTVLHILILQPNKTF---ACQMYNLLLSYDGGDHLKSLELVPN 194
Query: 293 NDGFTPLTLSCQLGRADVFREMLE 316
N G TP L+ G +F+ +++
Sbjct: 195 NQGLTPFKLAGVEGNIVMFQHLMQ 218
Score = 50.7 bits (122), Expect = 3e-07
Identities = 27/160 (16%), Positives = 49/160 (30%), Gaps = 41/160 (25%)
Query: 167 LGASALHLAIAYANNELVAD-LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYL 225
+ S L LA + + ++ L G V QR +
Sbjct: 2 IWESPLLLAAKENDVQALSKLLKFEGCEVHQR-------------------------GAM 36
Query: 226 GEYPLSWAACCSNESVYNLLIDSGA-----IPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
GE L AA N +L+++ ++ G LH+ V+N +++ L
Sbjct: 37 GETALHIAALYDNLEAAMVLMEAAPELVFEPMTSELYEGQTALHIAVINQNVNLVRALLA 96
Query: 281 H----------PKTPASNGILNNDGFTPLTLSCQLGRADV 310
L G PL+ + +G ++
Sbjct: 97 RGASVSARATGSVFHYRPHNLIYYGEHPLSFAACVGSEEI 136
Score = 47.2 bits (113), Expect = 4e-06
Identities = 19/155 (12%), Positives = 37/155 (23%), Gaps = 35/155 (22%)
Query: 112 RDHEACWQMQYRGSLGETLLHVLIICDTKLHTRLARTLLKCFPRLSQ--DVVEGEEYLGA 169
++ GE L + R L+ D+ + G
Sbjct: 106 TGSVFHYRPHNLIYYGEHPLSFAACVG---SEEIVRLLI------EHGADIRAQDSL-GN 155
Query: 170 SALHLAIAYANNELVAD----LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYL 225
+ LH+ I N L+ +++ + +GL
Sbjct: 156 TVLHILILQPNKTFACQMYNLLLSYDGGDHLKSL--------------ELVPNNQGLT-- 199
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGN 260
P A N ++ L+ A +
Sbjct: 200 ---PFKLAGVEGNIVMFQHLMQKRKHIAAAHHHHH 231
>1n11_A Ankyrin; clathrin, BAND 3, anion exchanger, structural protein;
2.70A {Homo sapiens} SCOP: d.211.1.1
Length = 437
Score = 68.3 bits (168), Expect = 2e-12
Identities = 30/147 (20%), Positives = 51/147 (34%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LH+A Y + L+E A+ ++ T
Sbjct: 146 GFTPLHVAAKYGKVRVAELLLERDAHPNAAG-------KNGLT----------------- 181
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL A +N + LL+ G P + G LH+ +++++ L
Sbjct: 182 -PLHVAVHHNNLDIVKLLLPRGGSPHSPAWNGYTPLHIAAKQNQVEVARSLL-------Q 233
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
G + G TPL L+ Q G A++
Sbjct: 234 YGGSANAESVQGVTPLHLAAQEGHAEM 260
Score = 66.4 bits (163), Expect = 7e-12
Identities = 38/189 (20%), Positives = 66/189 (34%), Gaps = 46/189 (24%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDV-VEGEEYLGASALHLAIAYANNELVA 185
G T LHV H + + LL + + LH+A + E+
Sbjct: 14 GLTPLHVASFMG---HLPIVKNLL------QRGASPNVSNVKVETPLHMAARAGHTEVAK 64
Query: 186 DLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLL 245
L++ A V +A +D QT PL AA + ++ LL
Sbjct: 65 YLLQNKAKVNAKA-------KDDQT------------------PLHCAARIGHTNMVKLL 99
Query: 246 IDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG----ILNNDGFTPLTL 301
+++ A P+ + G+ LH+ ++ L + GFTPL +
Sbjct: 100 LENNANPNLATTAGHTPLHIAAREGHVETVLALL-------EKEASQACMTKKGFTPLHV 152
Query: 302 SCQLGRADV 310
+ + G+ V
Sbjct: 153 AAKYGKVRV 161
Score = 66.0 bits (162), Expect = 1e-11
Identities = 32/147 (21%), Positives = 50/147 (34%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA + E+VA L+ AN + GL
Sbjct: 245 GVTPLHLAAQEGHAEMVALLLSKQANGNLG--------------------NKSGLT---- 280
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL A + V ++LI G + DA G LH+ + + + L
Sbjct: 281 -PLHLVAQEGHVPVADVLIKHGVMVDATTRMGYTPLHVASHYGNIKLVKFLL-------Q 332
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
+ G++PL + Q G D+
Sbjct: 333 HQADVNAKTKLGYSPLHQAAQQGHTDI 359
Score = 63.3 bits (155), Expect = 8e-11
Identities = 32/143 (22%), Positives = 49/143 (34%), Gaps = 28/143 (19%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHL + + LI+ G V G
Sbjct: 278 GLTPLHLVAQEGHVPVADVLIKHGVMVDAT--------------------TRMGYT---- 313
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL A+ N + L+ A +AK G LH D+ L++ AS
Sbjct: 314 -PLHVASHYGNIKLVKFLLQHQADVNAKTKLGYSPLHQAAQQGHTDIVTLLLKN---GAS 369
Query: 288 NGILNNDGFTPLTLSCQLGRADV 310
+++DG TPL ++ +LG V
Sbjct: 370 PNEVSSDGTTPLAIAKRLGYISV 392
Score = 61.7 bits (151), Expect = 2e-10
Identities = 32/189 (16%), Positives = 60/189 (31%), Gaps = 46/189 (24%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDV-VEGEEYLGASALHLAIAYANNELVA 185
G T LHV + + + + + LL + + G + LH+A E+
Sbjct: 179 GLTPLHVAVHHN---NLDIVKLLL------PRGGSPHSPAWNGYTPLHIAAKQNQVEVAR 229
Query: 186 DLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLL 245
L++ G + + TP L AA + + LL
Sbjct: 230 SLLQYGGSANAES-------VQGVTP------------------LHLAAQEGHAEMVALL 264
Query: 246 IDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG----ILNNDGFTPLTL 301
+ A + + G LH+V + + + +G G+TPL +
Sbjct: 265 LSKQANGNLGNKSGLTPLHLVAQEGHVPVADVLI-------KHGVMVDATTRMGYTPLHV 317
Query: 302 SCQLGRADV 310
+ G +
Sbjct: 318 ASHYGNIKL 326
Score = 61.0 bits (149), Expect = 4e-10
Identities = 35/153 (22%), Positives = 57/153 (37%), Gaps = 36/153 (23%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LH+A + E V L+E A+ +G
Sbjct: 113 GHTPLHIAAREGHVETVLALLEKEASQA--------------------CMTKKGFT---- 148
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA V LL++ A P+A G LH+ V ++ LD+ L
Sbjct: 149 -PLHVAAKYGKVRVAELLLERDAHPNAAGKNGLTPLHVAVHHNNLDIVKLLL-------P 200
Query: 288 NG----ILNNDGFTPLTLSCQLGRADVFREMLE 316
G +G+TPL ++ + + +V R +L+
Sbjct: 201 RGGSPHSPAWNGYTPLHIAAKQNQVEVARSLLQ 233
Score = 57.5 bits (140), Expect = 5e-09
Identities = 25/147 (17%), Positives = 39/147 (26%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ LH A + +V L+E AN G
Sbjct: 80 DQTPLHCAARIGHTNMVKLLLENNANPN--------------------LATTAGHT---- 115
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA + L++ A G LH+ K+ + L
Sbjct: 116 -PLHIAAREGHVETVLALLEKEASQACMTKKGFTPLHVAAKYGKVRVAELLL-------E 167
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
+G TPL ++ D+
Sbjct: 168 RDAHPNAAGKNGLTPLHVAVHHNNLDI 194
Score = 54.8 bits (133), Expect = 4e-08
Identities = 32/174 (18%), Positives = 59/174 (33%), Gaps = 35/174 (20%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDV-VEGEEYLGASALHLAIAYANNELVA 185
G T LH++ H +A L+ V V+ +G + LH+A Y N +LV
Sbjct: 278 GLTPLHLVAQEG---HVPVADVLI------KHGVMVDATTRMGYTPLHVASHYGNIKLVK 328
Query: 186 DLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLL 245
L++ A+V + + + PL AA + + LL
Sbjct: 329 FLLQHQADVNAKT-------KLGYS------------------PLHQAAQQGHTDIVTLL 363
Query: 246 IDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPL 299
+ +GA P+ S G L + + + + + + +
Sbjct: 364 LKNGASPNEVSSDGTTPLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFP 417
Score = 46.3 bits (111), Expect = 2e-05
Identities = 20/102 (19%), Positives = 32/102 (31%), Gaps = 28/102 (27%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G S LH A + ++V L++ GA+ + + D T
Sbjct: 344 GYSPLHQAAQQGHTDIVTLLLKNGASPNEVS-------SDGTT----------------- 379
Query: 228 YPLSWAACCSNESVYNLL---IDSGAIPDAKDSFGNMILHMV 266
PL+ A SV ++L D + D V
Sbjct: 380 -PLAIAKRLGYISVTDVLKVVTDETSFVLVSDKHRMSFPETV 420
Score = 30.5 bits (70), Expect = 1.5
Identities = 13/66 (19%), Positives = 20/66 (30%), Gaps = 11/66 (16%)
Query: 249 GAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG----ILNNDGFTPLTLSCQ 304
G G LH+ L + L G + N TPL ++ +
Sbjct: 4 GISGGGGGESGLTPLHVASFMGHLPIVKNLL-------QRGASPNVSNVKVETPLHMAAR 56
Query: 305 LGRADV 310
G +V
Sbjct: 57 AGHTEV 62
Score = 27.8 bits (63), Expect = 9.6
Identities = 8/29 (27%), Positives = 12/29 (41%), Gaps = 4/29 (13%)
Query: 286 ASNGI----LNNDGFTPLTLSCQLGRADV 310
S GI G TPL ++ +G +
Sbjct: 1 GSPGISGGGGGESGLTPLHVASFMGHLPI 29
>1ikn_D Protein (I-kappa-B-alpha), protein (NF-kappa-B P50D subunit);
transcription factor, IKB/NFKB complex; 2.30A {Homo
sapiens} SCOP: d.211.1.1 PDB: 1nfi_E
Length = 236
Score = 65.3 bits (160), Expect = 3e-12
Identities = 38/210 (18%), Positives = 66/210 (31%), Gaps = 44/210 (20%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVAD 186
G++ LH+ II + L +++ + + LHLA+ E+
Sbjct: 8 GDSFLHLAIIHE---EKALTMEVIRQVKGDLAFLNFQNNL-QQTPLHLAVITNQPEIAEA 63
Query: 187 LIEAGANVTQRAIGSFFLPRDQQTP---------------------RPSRHTDYEGLAYL 225
L+ AG + R TP P H+ + Y
Sbjct: 64 LLGAGCDPELRD-------FRGNTPLHLACEQGCLASVGVLTQSCTTPHLHSILKATNYN 116
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSF-GNMILHMVVVNDKLDMFGYALRHPKT 284
G L A+ + LL+ GA +A++ G LH+ V D+ L
Sbjct: 117 GHTCLHLASIHGYLGIVELLVSLGADVNAQEPCNGRTALHLAVDLQNPDLVSLLL----- 171
Query: 285 PASNG----ILNNDGFTPLTLSCQLGRADV 310
G + G++P L+ +
Sbjct: 172 --KCGADVNRVTYQGYSPYQLTWGRPSTRI 199
Score = 48.7 bits (117), Expect = 1e-06
Identities = 27/150 (18%), Positives = 46/150 (30%), Gaps = 36/150 (24%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQ--DVVEGEEYLGASALHLAIAYANNELV 184
G T LH+ I + + L+ S DV E G +ALHLA+ N +LV
Sbjct: 117 GHTCLHLASIHG---YLGIVELLV------SLGADVNAQEPCNGRTALHLAVDLQNPDLV 167
Query: 185 ADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNL 244
+ L++ GA+V + Y+G + P + +
Sbjct: 168 SLLLKCGADVNRV--------------------TYQGYS-----PYQLTWGRPSTRIQQQ 202
Query: 245 LIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
L ++ +
Sbjct: 203 LGQLTLENLQMLPESEDEESYDTESEFTEF 232
Score = 43.7 bits (104), Expect = 6e-05
Identities = 15/95 (15%), Positives = 36/95 (37%), Gaps = 7/95 (7%)
Query: 226 GEYPLSWAACCSNESVY----NLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
G+ L A +++ + A + +++ LH+ V+ ++ ++ L
Sbjct: 8 GDSFLHLAIIHEEKALTMEVIRQVKGDLAFLNFQNNLQQTPLHLAVITNQPEIAEALLGA 67
Query: 282 PKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
+ + G TPL L+C+ G + +
Sbjct: 68 G---CDPELRDFRGNTPLHLACEQGCLASVGVLTQ 99
>1oy3_D Transcription factor inhibitor I-kappa-B-beta; protein-protein
complex, transcription factors, nuclear localization,
DNA binding protein; 2.05A {Mus musculus} SCOP:
d.211.1.1 PDB: 1k3z_D
Length = 282
Score = 64.5 bits (158), Expect = 1e-11
Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 35/153 (22%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LH+A+ + + E+V L +AGA++ + G
Sbjct: 158 GHTPLHVAVIHKDAEMVRLLRDAGADLNKPEP------------------------TCGR 193
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL A SV LL+ +GA P A+ G L ++ + +
Sbjct: 194 TPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPILARLLR-------A 246
Query: 288 NG----ILNNDGFTPLTLSCQLGRADVFREMLE 316
+G D +P + S +D E E
Sbjct: 247 HGAPEPEDGGDKLSPCSSSGSDSDSDNRDEGDE 279
Score = 52.5 bits (127), Expect = 1e-07
Identities = 31/150 (20%), Positives = 45/150 (30%), Gaps = 36/150 (24%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQ--DVVEGEEYLGASALHLAIAYANNELV 184
G T LHV +I + R L D+ + E G + LHLA+ ++
Sbjct: 158 GHTPLHVAVIHK---DAEMVRLLR------DAGADLNKPEPTCGRTPLHLAVEAQAASVL 208
Query: 185 ADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNL 244
L++AGA+ T R +T PL A N + L
Sbjct: 209 ELLLKAGADPTARM-------YGGRT------------------PLGSALLRPNPILARL 243
Query: 245 LIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
L GA + D
Sbjct: 244 LRAHGAPEPEDGGDKLSPCSSSGSDSDSDN 273
Score = 52.2 bits (126), Expect = 1e-07
Identities = 25/159 (15%), Positives = 41/159 (25%), Gaps = 32/159 (20%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +ALHLA+ + + + L+ A + + QT
Sbjct: 9 GDTALHLAVIHQHEPFLDFLLGFSAGHEYLDLQN----DLGQT----------------- 47
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH------ 281
L AA S L +GA + G+ LH+ L+
Sbjct: 48 -ALHLAAILGEASTVEKLYAAGAGVLVAERGGHTALHLACRVRAHTCACVLLQPRPSHPR 106
Query: 282 ----PKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
S + P + Q + E
Sbjct: 107 DASDTYLTQSQDCTPDTSHAPAAVDSQPNPENEEEPRDE 145
Score = 52.2 bits (126), Expect = 1e-07
Identities = 26/175 (14%), Positives = 50/175 (28%), Gaps = 44/175 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +ALHLA + L++ + + A ++ TP
Sbjct: 78 GHTALHLACRVRAHTCACVLLQPRPSHPRDASDTYLTQSQDCTPD------------TSH 125
Query: 228 YPLSWAACCSNES-VYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH----- 281
P + + + E+ D +A++ G+ LH+ V++ +M
Sbjct: 126 APAAVDSQPNPENEEEPRDEDWRLQLEAENYDGHTPLHVAVIHKDAEMVRLLRDAGADLN 185
Query: 282 ------PKTP----ASNG------IL----------NNDGFTPLTLSCQLGRADV 310
+TP +L G TPL + +
Sbjct: 186 KPEPTCGRTPLHLAVEAQAASVLELLLKAGADPTARMYGGRTPLGSALLRPNPIL 240
>3aji_A 26S proteasome non-ATPase regulatory subunit 10; gankyrin, S6
ATPase, P-benzoyl-L-phenylalanine, PBPA, amber
suppression; HET: PBF; 2.05A {Mus musculus} PDB: 2dvw_A
2dwz_A* 1tr4_A 1uoh_A 1qym_A
Length = 231
Score = 61.8 bits (150), Expect = 5e-11
Identities = 27/149 (18%), Positives = 48/149 (32%), Gaps = 28/149 (18%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+LA + +EL ++ + T+ TD +
Sbjct: 7 NIMICNLAYSGKLDELKERILADKSLATR--------------------TDQD-----SR 41
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
L WA + + L+ G + KD G LH+ ++ L A
Sbjct: 42 TALHWACSAGHTEIVEFLLQLGVPVNDKDDAGWSPLHIAASAGXDEIVKALLVK---GAH 98
Query: 288 NGILNNDGFTPLTLSCQLGRADVFREMLE 316
+N +G TPL + R ++ +LE
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLE 127
Score = 59.9 bits (145), Expect = 2e-10
Identities = 37/164 (22%), Positives = 63/164 (38%), Gaps = 25/164 (15%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTP---------------R 212
+ALH A + + E+V L++ G V + +P
Sbjct: 40 SRTALHWACSAGHTEIVEFLLQLGVPVNDKD-------DAGWSPLHIAASAGXDEIVKAL 92
Query: 213 PSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKL 272
+ + G PL +AA + + +L++ GA PDAKD + +H L
Sbjct: 93 LVKGAHVNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHYDATAMHRAAAKGNL 152
Query: 273 DMFGYALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
M L + AS I + +G TPL L+C R + + ++
Sbjct: 153 KMVHILLFYK---ASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Score = 50.3 bits (120), Expect = 4e-07
Identities = 28/142 (19%), Positives = 52/142 (36%), Gaps = 28/142 (19%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
V G + LH A + +E+ L+E GAN +
Sbjct: 99 VNAVNQNGCTPLHYAASKNRHEIAVMLLEGGANPDAKDHY-------------------- 138
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
+ AA N + ++L+ A + +D+ GN LH+ ++++ + +
Sbjct: 139 -----DATAMHRAAAKGNLKMVHILLFYKASTNIQDTEGNTPLHLACDEERVEEAKFLVT 193
Query: 281 HPKTPASNGILNNDGFTPLTLS 302
AS I N + TPL ++
Sbjct: 194 Q---GASIYIENKEEKTPLQVA 212
>3v31_A Ankyrin repeat family A protein 2; structural genomics consortium,
SGC, ankra2, ANK repeat, Pro binding, HDAC4; 1.57A {Homo
sapiens} PDB: 3v2x_A 3v2o_A 3so8_A
Length = 167
Score = 60.5 bits (148), Expect = 5e-11
Identities = 28/147 (19%), Positives = 41/147 (27%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ ++H A +A IE + HTD EG
Sbjct: 3 NSLSVHQLAAQGEMLYLATRIEQENVIN--------------------HTDEEGFT---- 38
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL WAA +V L+ +GA P L + D+ L
Sbjct: 39 -PLMWAAAHGQIAVVEFLLQNGADPQLLGKGRESALSLACSKGYTDIVKMLL-------D 90
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
G + +G TPL +
Sbjct: 91 CGVDVNEYDWNGGTPLLYAVHGNHVKC 117
Score = 59.7 bits (146), Expect = 8e-11
Identities = 27/147 (18%), Positives = 44/147 (29%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + L A A+ +V L++ GA+ E
Sbjct: 36 GFTPLMWAAAHGQIAVVEFLLQNGADPQLL--------------------GKGR-----E 70
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
LS A + +L+D G + D G L V + + L
Sbjct: 71 SALSLACSKGYTDIVKMLLDCGVDVNEYDWNGGTPLLYAVHGNHVKCVKMLL-------E 123
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
+G I + G+ + L+ LG V
Sbjct: 124 SGADPTIETDSGYNSMDLAVALGYRSV 150
Score = 39.7 bits (94), Expect = 6e-04
Identities = 12/89 (13%), Positives = 22/89 (24%), Gaps = 25/89 (28%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + L A+ + + V L+E+GA+ T
Sbjct: 102 GGTPLLYAVHGNHVKCVKMLLESGADPTIET-------DSGYN----------------- 137
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKD 256
+ A SV ++
Sbjct: 138 -SMDLAVALGYRSVQQVIESHLLKLLQNI 165
>3kea_A K1L; tropism, ANK repeat, viral protein; 2.30A {Vaccinia virus}
Length = 285
Score = 62.5 bits (153), Expect = 5e-11
Identities = 31/184 (16%), Positives = 54/184 (29%), Gaps = 58/184 (31%)
Query: 157 SQDVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRH 216
S+D + + + G SA + AIA N LV L+ AGA + +
Sbjct: 21 SKDTFKADVH-GHSASYYAIADNNVRLVCTLLNAGALKNL---------LENEF------ 64
Query: 217 TDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFG 276
PL AA + + +L+ SG D GN L+ V + +
Sbjct: 65 ------------PLHQAATLEDTKIVKILLFSGLDDSQFDDKGNTALYYAVDSGNMQTVK 112
Query: 277 YALRH-----------PKTP----ASNG------IL---------NNDGFTPLTLSCQLG 306
++ KT + + ++ + G
Sbjct: 113 LFVKKNWRLMFYGKTGWKTSFYHAVMLNDVSIVSYFLSEIPSTFDLAILLSCIHITIKNG 172
Query: 307 RADV 310
D+
Sbjct: 173 HVDM 176
Score = 47.9 bits (115), Expect = 4e-06
Identities = 16/187 (8%), Positives = 53/187 (28%), Gaps = 48/187 (25%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQ--DVVEGEEYLGASALHLAIAYANNELV 184
G T L+ + + + + + + ++ + ++ + A+ + +V
Sbjct: 95 GNTALYYAVDSG---NMQTVKLFV------KKNWRLMFYGKTGWKTSFYHAVMLNDVSIV 145
Query: 185 ADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNL 244
+ + + AI + + + + L
Sbjct: 146 SYFLSEIPSTFDLAIL--------LS------------------CIHITIKNGHVDMMIL 179
Query: 245 LIDSGAIPDAKDSFGN-MILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPLTLSC 303
L+D + +S + + + N ++M I + ++ +
Sbjct: 180 LLDYMTSTNTNNSLLFIPDIKLAIDNKDIEMLQALF-------KYDI---NIYSANLENV 229
Query: 304 QLGRADV 310
L A++
Sbjct: 230 LLDDAEI 236
Score = 45.2 bits (108), Expect = 3e-05
Identities = 10/106 (9%), Positives = 29/106 (27%), Gaps = 16/106 (15%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPR---PSRHTDYEGLAY 224
S +H+ I + +++ L++ + P + D E L
Sbjct: 161 LLSCIHITIKNGHVDMMILLLDYMTSTNTNN-------SLLFIPDIKLAIDNKDIEMLQA 213
Query: 225 L------GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILH 264
L + + ++I+ + ++ +
Sbjct: 214 LFKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDSYTKDLDIV 259
Score = 31.7 bits (73), Expect = 0.52
Identities = 13/85 (15%), Positives = 28/85 (32%), Gaps = 11/85 (12%)
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
LS ++ + + L S D G+ + + ++ + + L +
Sbjct: 2 MDLSRINTWKSKQLKSFL--SSKDTFKADVHGHSASYYAIADNNVRLVCTLL-------N 52
Query: 288 NGILNN--DGFTPLTLSCQLGRADV 310
G L N + PL + L +
Sbjct: 53 AGALKNLLENEFPLHQAATLEDTKI 77
Score = 30.2 bits (69), Expect = 1.6
Identities = 6/47 (12%), Positives = 15/47 (31%), Gaps = 9/47 (19%)
Query: 159 DVVEGEEYL---GA---SALHLAIAYANNELVADLIEAGANVTQRAI 199
++++ L SA + + E+ +IE +
Sbjct: 209 EMLQ---ALFKYDINIYSANLENVLLDDAEIAKMIIEKHVEYKSDSY 252
>3t8k_A Uncharacterized protein; structural genomics, PSI-biology, protein
structure initiati midwest center F or structural
genomics, MCSG; 1.77A {Leptotrichia buccalis}
Length = 186
Score = 60.5 bits (147), Expect = 7e-11
Identities = 19/160 (11%), Positives = 43/160 (26%), Gaps = 35/160 (21%)
Query: 167 LGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLG 226
+ L A ++ LI GA++ R ++ T
Sbjct: 41 ILYDVLRNNNDEARYKISMFLINKGADIKSRT-------KEGTT---------------- 77
Query: 227 EYPLSWAACCSNESVYN------LLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
+ + ++ GA A +++ + N +D
Sbjct: 78 --LFFPLFQGGGNDITGTTELCKIFLEKGADITALYKPYKIVVFKNIFNYFVDENEMIPL 135
Query: 281 HPKTPASNG----ILNNDGFTPLTLSCQLGRADVFREMLE 316
+ + +G I + G T L + + + M +
Sbjct: 136 YKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIALKMMED 175
Score = 57.8 bits (140), Expect = 6e-10
Identities = 17/145 (11%), Positives = 32/145 (22%), Gaps = 27/145 (18%)
Query: 170 SALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYP 229
+ A E +L E G + + S +
Sbjct: 8 RTVSAAAMLGTYEDFLELFEKGYEDKESVLKS----------------------NILYDV 45
Query: 230 LSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG 289
L + + LI+ GA ++ G + + D+ K G
Sbjct: 46 LRNNNDEARYKISMFLINKGADIKSRTKEGTTLFFPLFQGGGNDIT-GTTELCKIFLEKG 104
Query: 290 ----ILNNDGFTPLTLSCQLGRADV 310
L + + D
Sbjct: 105 ADITALYKPYKIVVFKNIFNYFVDE 129
Score = 45.1 bits (107), Expect = 1e-05
Identities = 14/127 (11%), Positives = 25/127 (19%), Gaps = 38/127 (29%)
Query: 168 GASALHLAIAYANNELVAD------LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEG 221
G + N++ +E GA++T
Sbjct: 75 GTTLFFPLFQGGGNDITGTTELCKIFLEKGADITAL--------------------YKPY 114
Query: 222 LAYLGEYPLSWAACCSNES-------VYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
+ + + SG KD +G L V K
Sbjct: 115 -----KIVVFKNIFNYFVDENEMIPLYKLIFSQSGLQLLIKDKWGLTALEFVKRCQKPIA 169
Query: 275 FGYALRH 281
+
Sbjct: 170 LKMMEDY 176
Score = 33.1 bits (76), Expect = 0.11
Identities = 6/76 (7%), Positives = 19/76 (25%), Gaps = 9/76 (11%)
Query: 123 RGSLGETLLHVLIIC---DTKLHTRLARTLLKCFPRLSQDV-VEGEEYLGASALHLAIAY 178
+ ++ I D L + + + + ++ G +AL
Sbjct: 110 LYKPYKIVVFKNIFNYFVDENEMIPLYKLIF-----SQSGLQLLIKDKWGLTALEFVKRC 164
Query: 179 ANNELVADLIEAGANV 194
+ + +
Sbjct: 165 QKPIALKMMEDYIKKY 180
>2fo1_E LIN-12 protein; beta-barrel, protein-DNA complex, double helix,
ankyrin repeat, gene regulation/signalling protein/DNA
complex; 3.12A {Caenorhabditis elegans} SCOP: d.211.1.1
Length = 373
Score = 63.0 bits (154), Expect = 7e-11
Identities = 35/199 (17%), Positives = 57/199 (28%), Gaps = 44/199 (22%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVAD 186
LH + + + + S ++++ + LH + ++ E D
Sbjct: 94 SPIKLH----TEAAGSYAITEPITRE----SVNIIDPRH--NRTVLHWIASNSSAEKSED 143
Query: 187 LI--------EAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSN 238
LI AGA+V D+ TP L A
Sbjct: 144 LIVHEAKECIAAGADVNAMD-------CDENTP------------------LMLAVLARR 178
Query: 239 ESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTP 298
+ L+ +GA P + LH N M Y L K L+ +G T
Sbjct: 179 RRLVAYLMKAGADPTIYNKSERSALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTA 238
Query: 299 LTLSCQLGRADVFREMLEL 317
L + D +L
Sbjct: 239 LMIVAHNEGRDQV-ASAKL 256
Score = 57.3 bits (139), Expect = 5e-09
Identities = 27/151 (17%), Positives = 50/151 (33%), Gaps = 32/151 (21%)
Query: 168 GASALHLAIAYANNELVAD---LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAY 224
G +AL + + VA L+E GA V D Y+G
Sbjct: 235 GMTALMIVAHNEGRDQVASAKLLVEKGAKV------------DYDGAARKDSEKYKGRT- 281
Query: 225 LGEYPLSWAACCSNESVYNLLI-DSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPK 283
L +AA SN + L+ + G+ D +D G + + ++++ Y +
Sbjct: 282 ----ALHYAAQVSNMPIVKYLVGEKGSNKDKQDEDGKTPIMLAAQEGRIEVVMYLI---- 333
Query: 284 TPASNG----ILNNDGFTPLTLSCQLGRADV 310
G ++ T L+ ++
Sbjct: 334 ---QQGASVEAVDATDHTARQLAQANNHHNI 361
Score = 56.1 bits (136), Expect = 1e-08
Identities = 26/154 (16%), Positives = 45/154 (29%), Gaps = 36/154 (23%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ L LA+ LVA L++AGA+ T + +
Sbjct: 166 ENTPLMLAVLARRRRLVAYLMKAGADPTIY--------------------NKSERS---- 201
Query: 228 YPLSWAACCSNESVYNLLID---SGAIPDAKDSFGNMILHMVVVNDKLDMFGYA---LRH 281
L AA + + +++ + D G L +V N+ D A +
Sbjct: 202 -ALHQAAANRDFGMMVYMLNSTKLKGDIEELDRNGMTALMIVAHNEGRDQVASAKLLVEK 260
Query: 282 -----PKTPASNGILNNDGFTPLTLSCQLGRADV 310
A G T L + Q+ +
Sbjct: 261 GAKVDYDGAARKDSEKYKGRTALHYAAQVSNMPI 294
Score = 53.0 bits (128), Expect = 1e-07
Identities = 22/168 (13%), Positives = 38/168 (22%), Gaps = 33/168 (19%)
Query: 149 LLKCFPRLSQDVVEGE-EYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRD 207
LL+ E ++ N+ L T+
Sbjct: 41 LLEASYDGYIKRQRNELQHYSLYPNPQGYGNGNDFLGDFNHTNLQIPTEP---------- 90
Query: 208 QQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVV 267
+ E L A S + +LH +
Sbjct: 91 ----------EPE-----SPIKLHTEAAGSYAIT-EPITRESVNIIDPR-HNRTVLHWIA 133
Query: 268 VNDKLDMFGYALRH-PKTPASNG----ILNNDGFTPLTLSCQLGRADV 310
N + + H K + G ++ D TPL L+ R +
Sbjct: 134 SNSSAEKSEDLIVHEAKECIAAGADVNAMDCDENTPLMLAVLARRRRL 181
Score = 44.9 bits (107), Expect = 4e-05
Identities = 25/154 (16%), Positives = 45/154 (29%), Gaps = 28/154 (18%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
YP N+ + + + IP + + LH + R
Sbjct: 61 SLYPNPQGYGNGNDFLGDFNHTNLQIPTEPEPESPIKLHTEAAGSY-AITEPITRE---- 115
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLELSCKEFWRYSNITCSAYPLNALDTLLPDG 345
+ N I T L A+ +++ KE I A +NA+D D
Sbjct: 116 SVNIIDPRHNRTVLHWIASNSSAEKSEDLIVHEAKEC-----IAAGAD-VNAMDC---DE 166
Query: 346 RTNWNSALFI-ILNGTKEAHLDMLDGGIIQRLLE 378
T L + +L ++ L++
Sbjct: 167 NT----PLMLAVLAR----RRR-----LVAYLMK 187
Score = 33.4 bits (77), Expect = 0.17
Identities = 12/83 (14%), Positives = 23/83 (27%), Gaps = 25/83 (30%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + + LA E+V LI+ GA+V D
Sbjct: 313 GKTPIMLAAQEGRIEVVMYLIQQGASVEAV--------------------DATDHT---- 348
Query: 228 YPLSWAACCSNESVYNLLIDSGA 250
A ++ ++ ++
Sbjct: 349 -ARQLAQANNHHNIVDIFDRCRP 370
Score = 28.8 bits (65), Expect = 4.5
Identities = 5/27 (18%), Positives = 9/27 (33%)
Query: 168 GASALHLAIAYANNELVADLIEAGANV 194
+A LA A ++ +V
Sbjct: 346 DHTARQLAQANNHHNIVDIFDRCRPER 372
>1k1a_A B-cell lymphoma 3-encoded protein; BCL-3, NF-kappab transcription
factors, ikappab proteins; 1.86A {Homo sapiens} SCOP:
d.211.1.1 PDB: 1k1b_A
Length = 241
Score = 61.3 bits (150), Expect = 8e-11
Identities = 40/188 (21%), Positives = 64/188 (34%), Gaps = 39/188 (20%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVAD 186
G+T H+ R LL + D+ G +ALH+A+ E V
Sbjct: 79 GQTAAHLACEHR---SPTCLRALLDSAAPGTLDLEARNYD-GLTALHVAVNTECQETVQL 134
Query: 187 LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLI 246
L+E GA++ I S G PL A ++ S+ LL+
Sbjct: 135 LLERGADIDAVDIKS------------------------GRSPLIHAVENNSLSMVQLLL 170
Query: 247 DSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG----ILNNDGFTPLTLS 302
GA +A+ G+ LH L + + +G + N TPL ++
Sbjct: 171 QHGANVNAQMYSGSSALHSASGRGLLPLVRTLV-------RSGADSSLKNCHNDTPLMVA 223
Query: 303 CQLGRADV 310
D+
Sbjct: 224 RSRRVIDI 231
Score = 60.5 bits (148), Expect = 1e-10
Identities = 30/148 (20%), Positives = 45/148 (30%), Gaps = 30/148 (20%)
Query: 168 GASALHLAIAYANNELVADLIE----AGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLA 223
G + LH+A+ N V L+ G + +QTP
Sbjct: 9 GDTPLHIAVVQGNLPAVHRLVNLFQQGGRELDIYN-------NLRQTP------------ 49
Query: 224 YLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPK 283
L A + SV LL+ +GA P A D G H+ + L
Sbjct: 50 ------LHLAVITTLPSVVRLLVTAGASPMALDRHGQTAAHLACEHRSPTCLRALLDSAA 103
Query: 284 TPASN-GILNNDGFTPLTLSCQLGRADV 310
+ N DG T L ++ +
Sbjct: 104 PGTLDLEARNYDGLTALHVAVNTECQET 131
Score = 56.3 bits (137), Expect = 5e-09
Identities = 33/193 (17%), Positives = 63/193 (32%), Gaps = 45/193 (23%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVAD 186
G+T LH+ ++ + L+ F + +++ + LHLA+ +V
Sbjct: 9 GDTPLHIAVVQG---NLPAVHRLVNLFQQGGRELDIYNNL-RQTPLHLAVITTLPSVVRL 64
Query: 187 LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLI 246
L+ AGA+ R QT A + + L+
Sbjct: 65 LVTAGASPMALD-------RHGQT------------------AAHLACEHRSPTCLRALL 99
Query: 247 DSGAIP----DAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGI-LN----NDGFT 297
DS A +A++ G LH+ V + + L G ++ G +
Sbjct: 100 DSAAPGTLDLEARNYDGLTALHVAVNTECQETVQLLL-------ERGADIDAVDIKSGRS 152
Query: 298 PLTLSCQLGRADV 310
PL + + +
Sbjct: 153 PLIHAVENNSLSM 165
Score = 51.7 bits (125), Expect = 1e-07
Identities = 29/157 (18%), Positives = 49/157 (31%), Gaps = 36/157 (22%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQ--DVVEGEEYLGASALHLAIAYANNELV 184
G T LHV + + + LL + D+ + G S L A+ + +V
Sbjct: 116 GLTALHVAVNTE---CQETVQLLL------ERGADIDAVDIKSGRSPLIHAVENNSLSMV 166
Query: 185 ADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNL 244
L++ GANV Y G + L A+ +
Sbjct: 167 QLLLQHGANVNA--------------------QMYSGSS-----ALHSASGRGLLPLVRT 201
Query: 245 LIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
L+ SGA K+ + L + +D+
Sbjct: 202 LVRSGADSSLKNCHNDTPLMVARSRRVIDILRGKATR 238
Score = 30.5 bits (70), Expect = 1.1
Identities = 3/26 (11%), Positives = 10/26 (38%)
Query: 168 GASALHLAIAYANNELVADLIEAGAN 193
+ L +A + +++ A+
Sbjct: 216 NDTPLMVARSRRVIDILRGKATRPAS 241
Score = 27.8 bits (63), Expect = 7.3
Identities = 16/64 (25%), Positives = 21/64 (32%), Gaps = 7/64 (10%)
Query: 251 IPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG----ILNNDGFTPLTLSCQLG 306
+ D G+ LH+ VV L + G I NN TPL L+
Sbjct: 1 MATRADEDGDTPLHIAVVQGNLPAVHRLV---NLFQQGGRELDIYNNLRQTPLHLAVITT 57
Query: 307 RADV 310
V
Sbjct: 58 LPSV 61
>1yyh_A HN1;, notch 1, ankyrin domain; ankyrin repeats, cell
cycle,transcription; 1.90A {Homo sapiens} PDB: 2he0_A
2f8x_K 3nbn_B 3v79_K* 1ot8_A
Length = 253
Score = 61.3 bits (150), Expect = 1e-10
Identities = 33/191 (17%), Positives = 60/191 (31%), Gaps = 49/191 (25%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQ---DVVEGEEYLGASALHLAIAYANNEL 183
G T LH + D + + L+ D+ G + L LA A +
Sbjct: 90 GRTPLHAAVSAD---AQGVFQILI------RNRATDLDARMHD-GTTPLILAARLAVEGM 139
Query: 184 VADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYN 243
+ DLI + A+V D G + L WAA +N
Sbjct: 140 LEDLINSHADVNAV--------------------DDLGKS-----ALHWAAAVNNVDAAV 174
Query: 244 LLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG----ILNNDGFTPL 299
+L+ +GA D +++ L + + L + I ++ P
Sbjct: 175 VLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL-------DHFANRDITDHMDRLPR 227
Query: 300 TLSCQLGRADV 310
++ + D+
Sbjct: 228 DIAQERMHHDI 238
Score = 60.9 bits (149), Expect = 1e-10
Identities = 30/144 (20%), Positives = 51/144 (35%), Gaps = 28/144 (19%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + +++D I GA++ TD G
Sbjct: 23 GLETGNSEEEEDAPAVISDFIYQGASLHN-------------------QTDRTGET---- 59
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
L AA S L+++ A + +D+ G LH V D +F +R+ A+
Sbjct: 60 -ALHLAARYSRSDAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN---RAT 115
Query: 288 N-GILNNDGFTPLTLSCQLGRADV 310
+ +DG TPL L+ +L +
Sbjct: 116 DLDARMHDGTTPLILAARLAVEGM 139
Score = 52.9 bits (128), Expect = 6e-08
Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 37/148 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +ALHLA Y+ ++ L+EA A+ + D G
Sbjct: 57 GETALHLAARYSRSDAAKRLLEASADANIQ--------------------DNM-----GR 91
Query: 228 YPLSWAACCSNESVYNLLIDSGAI-PDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPA 286
PL A + V+ +LI + A DA+ G L + M +
Sbjct: 92 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI------- 144
Query: 287 SNG----ILNNDGFTPLTLSCQLGRADV 310
++ +++ G + L + + D
Sbjct: 145 NSHADVNAVDDLGKSALHWAAAVNNVDA 172
Score = 39.0 bits (92), Expect = 0.002
Identities = 28/143 (19%), Positives = 42/143 (29%), Gaps = 33/143 (23%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGA-IPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKT 284
G + +V + I GA + + D G LH+ + D L
Sbjct: 23 GLETGNSEEEEDAPAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL----- 77
Query: 285 PASNG----ILNNDGFTPLTLSCQLGRADVFREMLELSCKEFWRYSNITCSAYPLNALDT 340
I +N G TPL + VF ++L I A L+A
Sbjct: 78 --EASADANIQDNMGRTPLHAAVSADAQGVF-QIL------------IRNRATDLDARMH 122
Query: 341 LLPDGRTNWNSALFI-ILNGTKE 362
DG T L + +
Sbjct: 123 ---DGTT----PLILAARLAVEG 138
Score = 27.8 bits (63), Expect = 8.0
Identities = 3/26 (11%), Positives = 9/26 (34%)
Query: 168 GASALHLAIAYANNELVADLIEAGAN 193
+A ++++V L +
Sbjct: 223 DRLPRDIAQERMHHDIVRLLDLEHHH 248
>3v30_A DNA-binding protein rfxank; structural genomics consortium, SGC,
rfxank, ANK repeat, Pro binding; 1.57A {Homo sapiens}
PDB: 3uxg_A
Length = 172
Score = 59.7 bits (146), Expect = 1e-10
Identities = 30/147 (20%), Positives = 46/147 (31%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + L A A+ E V L+E GA+ E E
Sbjct: 36 GFTPLIWASAFGEIETVRFLLEWGADPHIL--------------------AKE-----RE 70
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
LS A+ + LL++ + D G L V + + L +
Sbjct: 71 SALSLASTGGYTDIVGLLLERDVDINIYDWNGGTPLLYAVRGNHVKCVEALL-------A 123
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
G + G+TP+ L+ LG V
Sbjct: 124 RGADLTTEADSGYTPMDLAVALGYRKV 150
Score = 55.9 bits (136), Expect = 2e-09
Identities = 23/147 (15%), Positives = 41/147 (27%), Gaps = 35/147 (23%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ ++H A + + + + G N+ + D G
Sbjct: 2 DSLSIHQLAAQGELDQLKEHLRKGDNLVNK-------------------PDERGFT---- 38
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL WA+ L++ GA P L + D+ G L
Sbjct: 39 -PLIWASAFGEIETVRFLLEWGADPHILAKERESALSLASTGGYTDIVGLLL-------E 90
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
I + +G TPL + +
Sbjct: 91 RDVDINIYDWNGGTPLLYAVRGNHVKC 117
Score = 49.0 bits (118), Expect = 4e-07
Identities = 20/135 (14%), Positives = 36/135 (26%), Gaps = 36/135 (26%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
SAL LA ++V L+E ++ D+ G
Sbjct: 69 RESALSLASTGGYTDIVGLLLERDVDINIY--------------------DWNGGT---- 104
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL +A ++ L+ GA + G + + V + +
Sbjct: 105 -PLLYAVRGNHVKCVEALLARGADLTTEADSGYTPMDLAVALGYRKVQQVIE-------N 156
Query: 288 NG----ILNNDGFTP 298
+ N P
Sbjct: 157 HILKLFQSNLVPADP 171
>3aaa_C Myotrophin, protein V-1; actin capping protein, barbed END capping,
inhibition, prote binding, actin capping, actin-binding,
cytoskeleton, ANK RE; 2.20A {Homo sapiens} PDB: 1myo_A
2kxp_C 2myo_A
Length = 123
Score = 57.8 bits (141), Expect = 2e-10
Identities = 25/147 (17%), Positives = 39/147 (26%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
A+ + + V D + G +V + G G
Sbjct: 7 CDKEFMWALKNGDLDEVKDYVAKGEDVNRTLEG-------------------------GR 41
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL +AA C + L+ GA +A D L V + L S
Sbjct: 42 KPLHYAADCGQLEILEFLLLKGADINAPDKHHITPLLSAVYEGHVSCVKLLL-------S 94
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
G + DG T + +
Sbjct: 95 KGADKTVKGPDGLTAFEATDNQAIKAL 121
>1bd8_A P19INK4D CDK4/6 inhibitor; tumor suppressor, ankyrin motif; 1.80A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bi8_B 1ap7_A 1blx_B
Length = 156
Score = 58.6 bits (143), Expect = 2e-10
Identities = 26/143 (18%), Positives = 51/143 (35%), Gaps = 30/143 (20%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +AL + + + + +L++ GA+ + D G +
Sbjct: 36 GKTALQVM-MFGSTAIALELLKQGASPNVQ--------------------DTSGTS---- 70
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
P+ AA +L++ GA + D G + +H+ V + + +
Sbjct: 71 -PVHDAARTGFLDTLKVLVEHGADVNVPDGTGALPIHLAVQEGHTAVVSFLAAE----SD 125
Query: 288 NGILNNDGFTPLTLSCQLGRADV 310
+ G TPL L+ Q G D+
Sbjct: 126 LHRRDARGLTPLELALQRGAQDL 148
Score = 52.8 bits (128), Expect = 2e-08
Identities = 24/148 (16%), Positives = 40/148 (27%), Gaps = 38/148 (25%)
Query: 168 GASALHLAIAYANNELVADLIEA-GANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLG 226
L A A + + V L+ + + G
Sbjct: 2 AGDRLSGAAARGDVQEVRRLLHRELVHPDAL--------------------NRFGKT--- 38
Query: 227 EYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPA 286
L S L+ GA P+ +D+ G +H LD +
Sbjct: 39 --ALQVMMFGSTAIA-LELLKQGASPNVQDTSGTSPVHDAARTGFLDTLKVLV------- 88
Query: 287 SNG----ILNNDGFTPLTLSCQLGRADV 310
+G + + G P+ L+ Q G V
Sbjct: 89 EHGADVNVPDGTGALPIHLAVQEGHTAV 116
Score = 41.6 bits (99), Expect = 1e-04
Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 26/114 (22%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G S +H A + + L+E GA+V
Sbjct: 68 GTSPVHDAARTGFLDTLKVLVEHGADVNVPD-------GTGAL----------------- 103
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
P+ A + +V + L + + +D+ G L + + D+ H
Sbjct: 104 -PIHLAVQEGHTAVVSFLA-AESDLHRRDARGLTPLELALQRGAQDLVDILQGH 155
>2f8y_A Notch homolog 1, translocation-associated (drosophila); ankyrin
repeats, transcription; 1.55A {Homo sapiens} PDB: 2qc9_A
1ymp_A
Length = 223
Score = 60.1 bits (147), Expect = 2e-10
Identities = 26/147 (17%), Positives = 48/147 (32%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + L LA A ++ DLI + A+V D G +
Sbjct: 92 GTTPLILAARLAVEGMLEDLINSHADVNAV--------------------DDLGKS---- 127
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
L WAA +N +L+ +GA D +++ L + + L
Sbjct: 128 -ALHWAAAVNNVDAAVVLLKNGANKDMQNNREETPLFLAAREGSYETAKVLL-------D 179
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
+ I ++ P ++ + D+
Sbjct: 180 HFANRDITDHMDRLPRDIAQERMHHDI 206
Score = 53.6 bits (130), Expect = 3e-08
Identities = 30/132 (22%), Positives = 51/132 (38%), Gaps = 28/132 (21%)
Query: 180 NNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNE 239
+++D I GA++ + TD GE L AA S
Sbjct: 3 APAVISDFIYQGASLHNQ-------------------TDRT-----GETALHLAARYSRS 38
Query: 240 SVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASN-GILNNDGFTP 298
L+++ A + +D+ G LH V D +F +R+ A++ +DG TP
Sbjct: 39 DAAKRLLEASADANIQDNMGRTPLHAAVSADAQGVFQILIRN---RATDLDARMHDGTTP 95
Query: 299 LTLSCQLGRADV 310
L L+ +L +
Sbjct: 96 LILAARLAVEGM 107
Score = 53.2 bits (129), Expect = 4e-08
Identities = 28/148 (18%), Positives = 50/148 (33%), Gaps = 37/148 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +ALHLA Y+ ++ L+EA A+ + D G
Sbjct: 25 GETALHLAARYSRSDAAKRLLEASADANIQ--------------------DNM-----GR 59
Query: 228 YPLSWAACCSNESVYNLLIDSGAI-PDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPA 286
PL A + V+ +LI + A DA+ G L + M +
Sbjct: 60 TPLHAAVSADAQGVFQILIRNRATDLDARMHDGTTPLILAARLAVEGMLEDLI------- 112
Query: 287 SNG----ILNNDGFTPLTLSCQLGRADV 310
++ +++ G + L + + D
Sbjct: 113 NSHADVNAVDDLGKSALHWAAAVNNVDA 140
Score = 51.6 bits (125), Expect = 1e-07
Identities = 44/191 (23%), Positives = 64/191 (33%), Gaps = 49/191 (25%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQ--DVVEGEEYLGASALHLAIAYANNELV 184
GET LH+ + A+ LL D + G + LH A++ +
Sbjct: 25 GETALHLAARYS---RSDAAKRLL------EASADANIQDNM-GRTPLHAAVSADAQGVF 74
Query: 185 ADLIEAGA-NVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYN 243
LI A ++ R D TP L AA + E +
Sbjct: 75 QILIRNRATDLDARM-------HDGTTP------------------LILAARLAVEGMLE 109
Query: 244 LLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG----ILNNDGFTPL 299
LI+S A +A D G LH + +D L NG + NN TPL
Sbjct: 110 DLINSHADVNAVDDLGKSALHWAAAVNNVDAAVVLL-------KNGANKDMQNNREETPL 162
Query: 300 TLSCQLGRADV 310
L+ + G +
Sbjct: 163 FLAAREGSYET 173
Score = 37.8 bits (89), Expect = 0.004
Identities = 27/131 (20%), Positives = 40/131 (30%), Gaps = 33/131 (25%)
Query: 238 NESVYNLLIDSGA-IPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG----ILN 292
+V + I GA + + D G LH+ + D L I +
Sbjct: 3 APAVISDFIYQGASLHNQTDRTGETALHLAARYSRSDAAKRLL-------EASADANIQD 55
Query: 293 NDGFTPLTLSCQLGRADVFREMLELSCKEFWRYSNITCSAYPLNALDTLLPDGRTNWNSA 352
N G TPL + VF ++L I A L+A DG T
Sbjct: 56 NMGRTPLHAAVSADAQGVF-QIL------------IRNRATDLDARMH---DGTT----P 95
Query: 353 LFI-ILNGTKE 362
L + +
Sbjct: 96 LILAARLAVEG 106
Score = 28.1 bits (64), Expect = 6.3
Identities = 4/27 (14%), Positives = 9/27 (33%)
Query: 168 GASALHLAIAYANNELVADLIEAGANV 194
+A ++++V L E
Sbjct: 191 DRLPRDIAQERMHHDIVRLLDEYNLVR 217
>1s70_B 130 kDa myosin-binding subunit of smooth muscle myosin phophatase
(M130), serine/threonine protein phosphatase PP1-beta
(OR delta) catalytic subunit; myosin phosphatase; HET:
PGE; 2.70A {Gallus gallus} SCOP: d.211.1.1
Length = 299
Score = 60.6 bits (148), Expect = 3e-10
Identities = 37/167 (22%), Positives = 53/167 (31%), Gaps = 49/167 (29%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +ALH A N ++V L+E GAN+ Q D E G
Sbjct: 73 GLTALHQACIDDNVDMVKFLVENGANINQP--------------------DNE-----GW 107
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGY---------- 277
PL AA C + LI GA A +S G+ L + ++
Sbjct: 108 IPLHAAASCGYLDIAEYLISQGAHVGAVNSEGDTPLDIAEEEAMEELLQNEVNRQGVDIE 167
Query: 278 -ALRHPKTP---------ASNGIL----NNDGFTPLTLSCQLGRADV 310
A + + S I G T L ++ G +V
Sbjct: 168 AARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEV 214
Score = 52.5 bits (127), Expect = 1e-07
Identities = 29/144 (20%), Positives = 53/144 (36%), Gaps = 36/144 (25%)
Query: 171 ALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPL 230
A + + E V L+E GA++ + +GL L
Sbjct: 43 VFLAACSSGDTEEVLRLLERGADINYA--------------------NVDGLT-----AL 77
Query: 231 SWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG- 289
A N + L+++GA + D+ G + LH LD+ Y + S G
Sbjct: 78 HQACIDDNVDMVKFLVENGANINQPDNEGWIPLHAAASCGYLDIAEYLI-------SQGA 130
Query: 290 ---ILNNDGFTPLTLSCQLGRADV 310
+N++G TPL ++ + ++
Sbjct: 131 HVGAVNSEGDTPLDIAEEEAMEEL 154
Score = 52.5 bits (127), Expect = 1e-07
Identities = 40/181 (22%), Positives = 58/181 (32%), Gaps = 25/181 (13%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQ--DVVEGEEYLGASALHLAIAYANNELV 184
G LH C + +A L+ SQ V G + L +A A EL+
Sbjct: 106 GWIPLHAAASCG---YLDIAEYLI------SQGAHVGAVNSE-GDTPLDIAEEEAMEELL 155
Query: 185 ADLI-EAGANV-TQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVY 242
+ + G ++ R + RD + S H + A G L AA V
Sbjct: 156 QNEVNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVL 215
Query: 243 NLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG----ILNNDGFTP 298
LLI + + KD G LH K + + N +N G T
Sbjct: 216 KLLIQARYDVNIKDYDGWTPLHAAAHWGKEEACRILV-------ENLCDMEAVNKVGQTA 268
Query: 299 L 299
Sbjct: 269 F 269
Score = 50.6 bits (122), Expect = 5e-07
Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 37/147 (25%)
Query: 120 MQYRGSLGETLLHVLIICDTKLHTRLARTLLKCFPRLSQ--DVVEGEEYLGASALHLAIA 177
+ +G E + + + L S + V + G +ALH+A A
Sbjct: 159 VNRQGVDIEAARK---EEERIMLRDARQWLN------SGHINDVRHAKS-GGTALHVAAA 208
Query: 178 YANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCS 237
E++ LI+A +V + DY+G PL AA
Sbjct: 209 KGYTEVLKLLIQARYDVNIK--------------------DYDGWT-----PLHAAAHWG 243
Query: 238 NESVYNLLIDSGAIPDAKDSFGNMILH 264
E +L+++ +A + G
Sbjct: 244 KEEACRILVENLCDMEAVNKVGQTAFD 270
Score = 47.9 bits (115), Expect = 4e-06
Identities = 20/144 (13%), Positives = 40/144 (27%), Gaps = 37/144 (25%)
Query: 171 ALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPL 230
L + + + + +G
Sbjct: 11 NEQLKRWIGSETDLEPPVVKRKKTKVK--------------------FDDG------AVF 44
Query: 231 SWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG- 289
A + L++ GA + + G LH ++D +DM + + NG
Sbjct: 45 LAACSSGDTEEVLRLLERGADINYANVDGLTALHQACIDDNVDMVKFLV-------ENGA 97
Query: 290 ---ILNNDGFTPLTLSCQLGRADV 310
+N+G+ PL + G D+
Sbjct: 98 NINQPDNEGWIPLHAAASCGYLDI 121
Score = 47.5 bits (114), Expect = 4e-06
Identities = 25/156 (16%), Positives = 39/156 (25%), Gaps = 27/156 (17%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTP--RPSRHTDYEGLAYL 225
G LH A + ++ LI GA+V + TP E L
Sbjct: 106 GWIPLHAAASCGYLDIAEYLISQGAHVGAVN-------SEGDTPLDIAEEEAMEELLQNE 158
Query: 226 -------GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYA 278
E L G LH+ ++
Sbjct: 159 VNRQGVDIEAARKEEERIMLRDARQWLNSGHINDVRHAKSGGTALHVAAAKGYTEVLKLL 218
Query: 279 LRHPKTPASNG----ILNNDGFTPLTLSCQLGRADV 310
+ I + DG+TPL + G+ +
Sbjct: 219 I-------QARYDVNIKDYDGWTPLHAAAHWGKEEA 247
>3f6q_A Integrin-linked protein kinase; ILK, integrin-linked kinase, pinch,
ankyrin repeat, ANK, IPP; 1.60A {Homo sapiens} PDB:
3ixe_A 2kbx_A
Length = 179
Score = 58.2 bits (142), Expect = 3e-10
Identities = 28/147 (19%), Positives = 45/147 (30%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G S LH A + +V LI GA + +
Sbjct: 39 GFSPLHWACREGRSAVVEMLIMRGARINV--------------------MNRGDDT---- 74
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA + + L+ A +A + GN+ LH + + + +
Sbjct: 75 -PLHLAASHGHRDIVQKLLQYKADINAVNEHGNVPLHYACFWGQDQVAEDLV-------A 126
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
NG I N G P+ + R +
Sbjct: 127 NGALVSICNKYGEMPVDKAKAPLRELL 153
Score = 52.0 bits (126), Expect = 5e-08
Identities = 26/148 (17%), Positives = 41/148 (27%), Gaps = 37/148 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGAN-VTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLG 226
+ N V ++ N + Q D G
Sbjct: 5 FMDDIFTQCREGNAVAVRLWLDNTENDLNQG---------DDH----------------G 39
Query: 227 EYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPA 286
PL WA +V +LI GA + + + LH+ + D+ L
Sbjct: 40 FSPLHWACREGRSAVVEMLIMRGARINVMNRGDDTPLHLAASHGHRDIVQKLL------- 92
Query: 287 SNG----ILNNDGFTPLTLSCQLGRADV 310
+N G PL +C G+ V
Sbjct: 93 QYKADINAVNEHGNVPLHYACFWGQDQV 120
Score = 50.1 bits (121), Expect = 2e-07
Identities = 18/114 (15%), Positives = 40/114 (35%), Gaps = 25/114 (21%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ LHLA ++ + ++V L++ A++ + G
Sbjct: 72 DDTPLHLAASHGHRDIVQKLLQYKADINAV--------------------NEHG-----N 106
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
PL +A + V L+ +GA+ + +G M + + + A +
Sbjct: 107 VPLHYACFWGQDQVAEDLVANGALVSICNKYGEMPVDKAKAPLRELLRERAEKM 160
Score = 41.6 bits (99), Expect = 2e-04
Identities = 13/89 (14%), Positives = 24/89 (26%), Gaps = 25/89 (28%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G LH A + +++ DL+ GA V+ + +
Sbjct: 105 GNVPLHYACFWGQDQVAEDLVANGALVSICN-------KYGEM----------------- 140
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKD 256
P+ A E + G +
Sbjct: 141 -PVDKAKAPLRELLRERAEKMGQNLNRIP 168
>1wdy_A 2-5A-dependent ribonuclease; hydrolase, RNA-binding; HET: 25A;
1.80A {Homo sapiens} SCOP: d.211.1.1
Length = 285
Score = 59.8 bits (146), Expect = 4e-10
Identities = 31/147 (21%), Positives = 47/147 (31%), Gaps = 35/147 (23%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
L A+ + +LV L+E GANV + + EG G
Sbjct: 5 DNHLLIKAVQNEDVDLVQQLLEGGANVNFQ--------------------EEEG----GW 40
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL A S E + LL+ GA P + G + + + + L S
Sbjct: 41 TPLHNAVQMSREDIVELLLRHGADPVLRKKNGATPFLLAAIAGSVKLLKLFL-------S 93
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
G + GFT + G+
Sbjct: 94 KGADVNECDFYGFTAFMEAAVYGKVKA 120
Score = 59.4 bits (145), Expect = 6e-10
Identities = 36/193 (18%), Positives = 58/193 (30%), Gaps = 43/193 (22%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQ--DVVEGEEYLGASALHLAIAYANNELV 184
LL + + L + LL +V EE G + LH A+ + ++V
Sbjct: 5 DNHLLIKAVQNE---DVDLVQQLL------EGGANVNFQEEEGGWTPLHNAVQMSREDIV 55
Query: 185 ADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNL 244
L+ GA+ R G P AA + + L
Sbjct: 56 ELLLRHGADPVLR--------------------KKN-----GATPFLLAAIAGSVKLLKL 90
Query: 245 LIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH-------PKTPASNGILNNDGFT 297
+ GA + D +G V K+ + + KT L G T
Sbjct: 91 FLSKGADVNECDFYGFTAFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGAT 150
Query: 298 PLTLSCQLGRADV 310
L + + G +V
Sbjct: 151 ALMDAAEKGHVEV 163
Score = 55.9 bits (136), Expect = 9e-09
Identities = 32/152 (21%), Positives = 50/152 (32%), Gaps = 31/152 (20%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +A A Y + + L + GANV R D E L G
Sbjct: 105 GFTAFMEAAVYGKVKALKFLYKRGANVNLRR---------------KTKEDQERLRKGGA 149
Query: 228 YPLSWAACCSNESVYNLLID-SGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPA 286
L AA + V +L+D GA +A D+ G L +++ +
Sbjct: 150 TALMDAAEKGHVEVLKILLDEMGADVNACDNMGRNALIHALLSSDDS-------DVEAIT 202
Query: 287 ----SNG----ILNNDGFTPLTLSCQLGRADV 310
+G + G TPL L+ + +
Sbjct: 203 HLLLDHGADVNVRGERGKTPLILAVEKKHLGL 234
Score = 53.2 bits (129), Expect = 7e-08
Identities = 34/155 (21%), Positives = 53/155 (34%), Gaps = 32/155 (20%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLI-EAGANVTQRAIGSFFLPRDQQTPRPSRHTDY 219
E GA+AL A + E++ L+ E GA+V D
Sbjct: 141 QERLRKGGATALMDAAEKGHVEVLKILLDEMGADVNAC--------------------DN 180
Query: 220 EGLAYLGEYPLSWAACCSNESVY----NLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMF 275
G L A S++S +LL+D GA + + G L + V L +
Sbjct: 181 MGRN-----ALIHALLSSDDSDVEAITHLLLDHGADVNVRGERGKTPLILAVEKKHLGLV 235
Query: 276 GYALRHPKTPASNGILNNDGFTPLTLSCQLGRADV 310
L ++DG T L L+ +L +
Sbjct: 236 QRLLEQEH--IEINDTDSDGKTALLLAVELKLKKI 268
Score = 52.1 bits (126), Expect = 1e-07
Identities = 22/160 (13%), Positives = 38/160 (23%), Gaps = 37/160 (23%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
GA+ LA + +L+ + GA+V + D+ G
Sbjct: 72 GATPFLLAAIAGSVKLLKLFLSKGADVNEC--------------------DFYGFT---- 107
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMI----------LHMVVVNDKLDMFGY 277
AA L GA + + L +++
Sbjct: 108 -AFMEAAVYGKVKALKFLYKRGANVNLRRKTKEDQERLRKGGATALMDAAEKGHVEVLKI 166
Query: 278 ALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLEL 317
L A +N G L + + L
Sbjct: 167 LLDEMG--ADVNACDNMGRNALIHALLSSDDSDVEAITHL 204
Score = 40.9 bits (97), Expect = 7e-04
Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 26/90 (28%)
Query: 168 GASALHLAIAYANNELVADLIE-AGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLG 226
G + L LA+ + LV L+E + TD + G
Sbjct: 219 GKTPLILAVEKKHLGLVQRLLEQEHIEIND--------------------TDSD-----G 253
Query: 227 EYPLSWAACCSNESVYNLLIDSGAIPDAKD 256
+ L A + + LL GA D D
Sbjct: 254 KTALLLAVELKLKKIAELLCKRGASTDCGD 283
>1awc_B Protein (GA binding protein beta 1); complex (transcription
regulation/DNA), DNA-binding, nuclear protein, ETS
domain, ankyrin repeats; HET: DNA BRU CBR; 2.15A {Mus
musculus} SCOP: d.211.1.1
Length = 153
Score = 57.0 bits (139), Expect = 5e-10
Identities = 31/153 (20%), Positives = 52/153 (33%), Gaps = 37/153 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G S LHLA Y + L+ AG + R + +T
Sbjct: 34 GTSPLHLAAQYGHFSTTEVLLRAGVSRDART-------KVDRT----------------- 69
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA + ++ +L+ GA +AKD LH ++ ++ +
Sbjct: 70 -PLHMAASEGHANIVEVLLKHGADVNAKDMLKMTALHWATEHNHQEVVELLI-------K 121
Query: 288 NG----ILNNDGFTPLTLSCQLGRADVFREMLE 316
G + T +S G D+ E+L+
Sbjct: 122 YGADVHTQSKFCKTAFDISIDNGNEDLA-EILQ 153
Score = 55.5 bits (135), Expect = 2e-09
Identities = 27/147 (18%), Positives = 43/147 (29%), Gaps = 37/147 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
L A ++ V L+ GA T TD+ G
Sbjct: 2 LGKKLLEAARAGQDDEVRILMANGAPFT---------------------TDWL-----GT 35
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA + S +L+ +G DA+ LHM ++ L
Sbjct: 36 SPLHLAAQYGHFSTTEVLLRAGVSRDARTKVDRTPLHMAASEGHANIVEVLL-------K 88
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
+G + T L + + +V
Sbjct: 89 HGADVNAKDMLKMTALHWATEHNHQEV 115
>1bi7_B P16INK4A, MTS1, multiple tumor suppressor; cyclin dependent kinase,
cyclin dependent kinase inhibitory protein, CDK, cell
cycle; 3.40A {Homo sapiens} SCOP: d.211.1.1 PDB: 1a5e_A
1dc2_A 2a5e_A
Length = 156
Score = 57.1 bits (139), Expect = 6e-10
Identities = 34/150 (22%), Positives = 45/150 (30%), Gaps = 30/150 (20%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
A L A A E V L+EAGAN G
Sbjct: 12 SADWLATAAARGRVEEVRALLEAGANPNAPNSY-------------------------GR 46
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMI-LHMVVVNDKLDMFGYALRHPKTPA 286
P+ S LL+ GA P+ D +H LD R A
Sbjct: 47 RPIQVMMMGSARVA-ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA---GA 102
Query: 287 SNGILNNDGFTPLTLSCQLGRADVFREMLE 316
+ + G P+ L+ +LG DV R +
Sbjct: 103 RLDVRDAWGRLPVDLAEELGHRDVARYLRA 132
Score = 52.1 bits (126), Expect = 3e-08
Identities = 19/143 (13%), Positives = 38/143 (26%), Gaps = 33/143 (23%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + + + + L+ GA T
Sbjct: 45 GRRPIQVM-MMGSARVAELLLLHGAEPNCAD-------PATLT----------------- 79
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
P+ AA +L +GA D +D++G + + + D+ Y +
Sbjct: 80 RPVHDAAREGFLDTLVVLHRAGARLDVRDAWGRLPVDLAEELGHRDVARYLR-------A 132
Query: 288 NGILNNDGFTPLTLSCQLGRADV 310
G + G +D+
Sbjct: 133 AAG-GTRGSNHARIDAAEGPSDI 154
Score = 37.8 bits (89), Expect = 0.002
Identities = 17/117 (14%), Positives = 28/117 (23%), Gaps = 33/117 (28%)
Query: 142 HTRLARTLLKCFPRLSQ--DVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAI 199
R+A LL + + +H A + + L AGA + R
Sbjct: 56 SARVAELLL------LHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRAGARLDVR-- 107
Query: 200 GSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKD 256
D G P+ A + V L + +
Sbjct: 108 ------------------DAWGRL-----PVDLAEELGHRDVARYLRAAAGGTRGSN 141
>3utm_A Tankyrase-1; tankyrase, TNKS, ankryin repeat clusters, WNT
signaling, POL ribosylation, transferase-signaling
protein complex; 2.00A {Mus musculus}
Length = 351
Score = 59.8 bits (146), Expect = 7e-10
Identities = 30/147 (20%), Positives = 53/147 (36%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
++ LHLA Y +V L++ GA+V D GL
Sbjct: 58 KSTPLHLAAGYNRVRIVQLLLQHGADVH--------------------AKDKGGLV---- 93
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL A + V LL+ GA +A D + LH +++++ L S
Sbjct: 94 -PLHNACSYGHYEVTELLLKHGACVNAMDLWQFTPLHEAASKNRVEVCSLLL-------S 145
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
+G ++N G + + ++ +
Sbjct: 146 HGADPTLVNCHGKSAVDMAPTPELRER 172
Score = 58.3 bits (142), Expect = 2e-09
Identities = 31/169 (18%), Positives = 49/169 (28%), Gaps = 46/169 (27%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G LH A +Y + E+ L++ GA V Q T
Sbjct: 91 GLVPLHNACSYGHYEVTELLLKHGACVNAMD-------LWQFT----------------- 126
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP-- 285
PL AA + V +LL+ GA P + G + M + + Y + +
Sbjct: 127 -PLHEAASKNRVEVCSLLLSHGADPTLVNCHGKSAVDMAPTPELRERLTYEFKG-HSLLQ 184
Query: 286 -ASNGIL----------------NNDGFTPLTLSCQLGRADVFREMLEL 317
A L T L + +++ EL
Sbjct: 185 AAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPK-RKQVAEL 232
Score = 57.9 bits (141), Expect = 3e-09
Identities = 40/180 (22%), Positives = 62/180 (34%), Gaps = 48/180 (26%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIA--YANNELV 184
G +LL + + L + + + +ALH A+A + + V
Sbjct: 179 GHSLLQAA----READLAKVKKTL-----ALEIINFKQPQSHETALHCAVASLHPKRKQV 229
Query: 185 AD-LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYN 243
A+ L+ GANV ++ +D TP L AA ++ V
Sbjct: 230 AELLLRKGANVNEKN-------KDFMTP------------------LHVAAERAHNDVME 264
Query: 244 LLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG----ILNNDGFTPL 299
+L GA +A DS G LH + L L S G I++ GFT
Sbjct: 265 VLHKHGAKMNALDSLGQTALHRAALAGHLQTCRLLL-------SYGSDPSIISLQGFTAA 317
Score = 56.0 bits (136), Expect = 1e-08
Identities = 32/157 (20%), Positives = 44/157 (28%), Gaps = 38/157 (24%)
Query: 159 DVVEGEEYLGASALHLAIAYANNELVAD-LIEAGANVTQRAIGSFFLPRDQQTPRPSRHT 217
V EY L A N E + L N
Sbjct: 16 KAVLTGEY-KKDELLEAARSGNEEKLMALLTPLNVNCHAS-------------------- 54
Query: 218 DYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGY 277
D PL AA + + LL+ GA AKD G + LH ++
Sbjct: 55 DGRKST-----PLHLAAGYNRVRIVQLLLQHGADVHAKDKGGLVPLHNACSYGHYEVTEL 109
Query: 278 ALRHPKTPASNG----ILNNDGFTPLTLSCQLGRADV 310
L +G ++ FTPL + R +V
Sbjct: 110 LL-------KHGACVNAMDLWQFTPLHEAASKNRVEV 139
Score = 52.9 bits (128), Expect = 1e-07
Identities = 28/153 (18%), Positives = 48/153 (31%), Gaps = 24/153 (15%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTP--RPSRHTDYEGLAYL 225
+ LH A + E+ + L+ GA+ T ++ E L Y
Sbjct: 124 QFTPLHEAASKNRVEVCSLLLSHGADPTLVN-------CHGKSAVDMAPTPELRERLTYE 176
Query: 226 GEY-PLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVN---DKLDMFGYALRH 281
+ L AA ++ + + I + LH V + + + LR
Sbjct: 177 FKGHSLLQAAREADLAKVKKTLALEIINFKQPQSHETALHCAVASLHPKRKQVAELLLRK 236
Query: 282 PKTPASNG----ILNNDGFTPLTLSCQLGRADV 310
G N D TPL ++ + DV
Sbjct: 237 -------GANVNEKNKDFMTPLHVAAERAHNDV 262
Score = 49.4 bits (119), Expect = 1e-06
Identities = 28/141 (19%), Positives = 45/141 (31%), Gaps = 34/141 (24%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQ--DVVEGEEYLGASALHLAIAYANNELV 184
ET LH + ++A LL + +V E + + LH+A A+N+++
Sbjct: 211 HETALHCAVASLHPKRKQVAELLL------RKGANVNEKNKD-FMTPLHVAAERAHNDVM 263
Query: 185 ADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNL 244
L + GA + D G L AA + L
Sbjct: 264 EVLHKHGAKMNAL--------------------DSLGQT-----ALHRAALAGHLQTCRL 298
Query: 245 LIDSGAIPDAKDSFGNMILHM 265
L+ G+ P G M
Sbjct: 299 LLSYGSDPSIISLQGFTAAQM 319
Score = 49.4 bits (119), Expect = 2e-06
Identities = 23/161 (14%), Positives = 40/161 (24%), Gaps = 41/161 (25%)
Query: 157 SQDVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRH 216
++ + E +L A A+ V + +
Sbjct: 169 LRERLTYE--FKGHSLLQAAREADLAKVKKTLALEIIN-------------------FKQ 207
Query: 217 TDYEGLAYLGEYPLSWAACCS---NESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLD 273
E L A + V LL+ GA + K+ LH+ D
Sbjct: 208 PQS------HETALHCAVASLHPKRKQVAELLLRKGANVNEKNKDFMTPLHVAAERAHND 261
Query: 274 MFGYALRHPKTPASNG----ILNNDGFTPLTLSCQLGRADV 310
+ +G L++ G T L + G
Sbjct: 262 VMEVLH-------KHGAKMNALDSLGQTALHRAALAGHLQT 295
Score = 37.9 bits (89), Expect = 0.007
Identities = 11/92 (11%), Positives = 22/92 (23%), Gaps = 30/92 (32%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +ALH A + + L+ G++ + +G
Sbjct: 280 GQTALHRAALAGHLQTCRLLLSYGSDPSII--------------------SLQGFT---- 315
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFG 259
E+V ++ D
Sbjct: 316 -AAQMGN----EAV-QQILSESTPMRTSDVDY 341
Score = 32.9 bits (76), Expect = 0.26
Identities = 9/72 (12%), Positives = 17/72 (23%), Gaps = 12/72 (16%)
Query: 244 LLIDSGAIPDAKDSFGNMILHMVVV-NDKLDMFGYALRHPKTPASNGI----LNNDGFTP 298
L D A + L ++ + + + TP
Sbjct: 9 DLADPSAKAVLTGEYKKDELLEAARSGNEEKLMALLT-------PLNVNCHASDGRKSTP 61
Query: 299 LTLSCQLGRADV 310
L L+ R +
Sbjct: 62 LHLAAGYNRVRI 73
>3c5r_A BARD-1, BRCA1-associated ring domain protein 1; ankyrin repeat,
helix, extended loop, four repeat, PR ANK repeat,
disease mutation, metal-binding; 2.00A {Homo sapiens}
SCOP: k.37.1.1
Length = 137
Score = 56.3 bits (137), Expect = 7e-10
Identities = 26/143 (18%), Positives = 47/143 (32%), Gaps = 28/143 (19%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LH+A + V L++ G++ + D+ G
Sbjct: 10 GETLLHIASIKGDIPSVEYLLQNGSDPNVK--------------------DHAGWT---- 45
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL A + V LL+ A+ + + LH N +D+ L + AS
Sbjct: 46 -PLHEACNHGHLKVVELLLQHKALVNTTGYQNDSPLHDAAKNGHVDIVKLLLSY---GAS 101
Query: 288 NGILNNDGFTPLTLSCQLGRADV 310
+N G P+ + +
Sbjct: 102 RNAVNIFGLRPVDYTDDESMKSL 124
Score = 50.5 bits (122), Expect = 8e-08
Identities = 31/157 (19%), Positives = 51/157 (32%), Gaps = 37/157 (23%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQ--DVVEGEEYLGASALHLAIAYANNELV 184
GETLLH+ I LL D + G + LH A + + ++V
Sbjct: 10 GETLLHIASIKG---DIPSVEYLL------QNGSDPNVKDHA-GWTPLHEACNHGHLKVV 59
Query: 185 ADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNL 244
L++ A V T Y+ + PL AA + + L
Sbjct: 60 ELLLQHKALVN--------------------TTGYQN-----DSPLHDAAKNGHVDIVKL 94
Query: 245 LIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
L+ GA +A + FG + + ++
Sbjct: 95 LLSYGASRNAVNIFGLRPVDYTDDESMKSLLLLPEKN 131
Score = 27.8 bits (63), Expect = 4.7
Identities = 2/26 (7%), Positives = 8/26 (30%)
Query: 168 GASALHLAIAYANNELVADLIEAGAN 193
G + + L+ + ++
Sbjct: 109 GLRPVDYTDDESMKSLLLLPEKNESS 134
>1n0r_A 4ANK, 4 ankyrin repeats; structural protein; 1.50A {} SCOP:
k.37.1.1
Length = 126
Score = 55.8 bits (136), Expect = 7e-10
Identities = 40/147 (27%), Positives = 62/147 (42%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA + E+V L+EAGA+V + ++ +T
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD-------KNGRT----------------- 37
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA + V LL+++GA +AKD G LH+ N L++ L
Sbjct: 38 -PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL-------E 89
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
G + +G TPL L+ + G +V
Sbjct: 90 AGADVNAKDKNGRTPLHLAARNGHLEV 116
>3b7b_A Euchromatic histone-lysine N-methyltransferase 1; ankyrin repeat,
alternative splicing, ANK repeat, chromatin regulator,
nucleus, phosphorylation; 2.99A {Homo sapiens} SCOP:
k.37.1.1 PDB: 3b95_A*
Length = 237
Score = 58.2 bits (142), Expect = 8e-10
Identities = 32/144 (22%), Positives = 58/144 (40%), Gaps = 29/144 (20%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
S LH A + ++ L++AGAN+ + DQ+T
Sbjct: 11 KRSPLHAAAEAGHVDICHMLVQAGANIDTCS-------EDQRT----------------- 46
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA ++ LI +GA+ D KD+ G+ LH+ ++ Y L +
Sbjct: 47 -PLMEAAENNHLEAVKYLIKAGALVDPKDAEGSTCLHLAAKKGHYEVVQYLLSN---GQM 102
Query: 288 N-GILNNDGFTPLTLSCQLGRADV 310
+ ++ G+TP+ + + D+
Sbjct: 103 DVNCQDDGGWTPMIWATEYKHVDL 126
Score = 56.7 bits (138), Expect = 3e-09
Identities = 27/147 (18%), Positives = 48/147 (32%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + + A Y + +LV L+ G+++ R D E
Sbjct: 111 GWTPMIWATEYKHVDLVKLLLSKGSDINIR--------------------DNEENI---- 146
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
L WAA + +L+ + A + G+ LH+ ++ D L S
Sbjct: 147 -CLHWAAFSGCVDIAEILLAAKCDLHAVNIHGDSPLHIAARENRYDCVVLFL-------S 198
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
+ N +G TPL + +
Sbjct: 199 RDSDVTLKNKEGETPLQCASLNSQVWS 225
Score = 53.6 bits (130), Expect = 3e-08
Identities = 34/163 (20%), Positives = 60/163 (36%), Gaps = 34/163 (20%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTP--RPSRHTDYEGLAYL 225
+ L A + E V LI+AGA V + + T ++ YE + YL
Sbjct: 44 QRTPLMEAAENNHLEAVKYLIKAGALVDPKD-------AEGSTCLHLAAKKGHYEVVQYL 96
Query: 226 --------------GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDK 271
G P+ WA + + LL+ G+ + +D+ N+ LH +
Sbjct: 97 LSNGQMDVNCQDDGGWTPMIWATEYKHVDLVKLLLSKGSDINIRDNEENICLHWAAFSGC 156
Query: 272 LDMFGYALRHPKTPASNG----ILNNDGFTPLTLSCQLGRADV 310
+D+ L + +N G +PL ++ + R D
Sbjct: 157 VDIAEILL-------AAKCDLHAVNIHGDSPLHIAARENRYDC 192
Score = 33.2 bits (77), Expect = 0.15
Identities = 15/83 (18%), Positives = 25/83 (30%), Gaps = 25/83 (30%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G S LH+A + V + ++VT + + E GE
Sbjct: 177 GDSPLHIAARENRYDCVVLFLSRDSDVTLK--------------------NKE-----GE 211
Query: 228 YPLSWAACCSNESVYNLLIDSGA 250
PL A+ S + +
Sbjct: 212 TPLQCASLNSQVWSALQMSKALQ 234
>3eu9_A Huntingtin-interacting protein 14; epigenetics, ankyrin repeats,
methyllyine binding, huntingti interacting protein 14,
acyltransferase, ANK repeat; HET: HIS; 1.99A {Homo
sapiens}
Length = 240
Score = 58.2 bits (142), Expect = 9e-10
Identities = 29/143 (20%), Positives = 44/143 (30%), Gaps = 35/143 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ LH A +LV I GA V Q L
Sbjct: 42 NVTLLHWAAINNRIDLVKYYISKGAIVDQLGG------------------------DLNS 77
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL WA + S+ L+ GA P D G +H+ + Y + +
Sbjct: 78 TPLHWATRQGHLSMVVQLMKYGADPSLIDGEGCSCIHLAAQFGHTSIVAYLI-------A 130
Query: 288 NG----ILNNDGFTPLTLSCQLG 306
G +++ +G TPL +
Sbjct: 131 KGQDVDMMDQNGMTPLMWAAYRT 153
Score = 57.4 bits (140), Expect = 2e-09
Identities = 29/148 (19%), Positives = 45/148 (30%), Gaps = 37/148 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ A Y E +L+EAG +V Q D E
Sbjct: 9 STWDIVKATQYGIYERCRELVEAGYDVRQP--------------------DKE-----NV 43
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDS-FGNMILHMVVVNDKLDMFGYALRHPKTPA 286
L WAA + + I GAI D + LH L M +
Sbjct: 44 TLLHWAAINNRIDLVKYYISKGAIVDQLGGDLNSTPLHWATRQGHLSMVVQLM------- 96
Query: 287 SNG----ILNNDGFTPLTLSCQLGRADV 310
G +++ +G + + L+ Q G +
Sbjct: 97 KYGADPSLIDGEGCSCIHLAAQFGHTSI 124
Score = 54.4 bits (132), Expect = 2e-08
Identities = 32/149 (21%), Positives = 48/149 (32%), Gaps = 38/149 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G S +HLA + + +VA LI G +V D G+
Sbjct: 109 GCSCIHLAAQFGHTSIVAYLIAKGQDVDMM--------------------DQNGMT---- 144
Query: 228 YPLSWAACCSNE-SVYNLLIDSGAIPDAKDSF-GNMILHMVVVNDKLDMFGYALRHPKTP 285
PL WAA ++ LL+ + D + N LH V+ + L
Sbjct: 145 -PLMWAAYRTHSVDPTRLLLTFNVSVNLGDKYHKNTALHWAVLAGNTTVISLLL------ 197
Query: 286 ASNG----ILNNDGFTPLTLSCQLGRADV 310
G N G + L L+ Q +
Sbjct: 198 -EAGANVDAQNIKGESALDLAKQRKNVWM 225
Score = 42.0 bits (100), Expect = 2e-04
Identities = 22/98 (22%), Positives = 37/98 (37%), Gaps = 25/98 (25%)
Query: 159 DVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTD 218
V G++Y +ALH A+ N +++ L+EAGANV + +
Sbjct: 168 SVNLGDKYHKNTALHWAVLAGNTTVISLLLEAGANVDAQ--------------------N 207
Query: 219 YEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKD 256
+ GE L A N + N L ++ +
Sbjct: 208 IK-----GESALDLAKQRKNVWMINHLQEARQAKGYDN 240
>3deo_A Signal recognition particle 43 kDa protein; chloroplast SRP system,
signal sequence, ankyrin repeat, chromodomain, type I
turn; 1.50A {Arabidopsis thaliana} SCOP: b.34.13.2
k.37.1.1 PDB: 3dep_A 1x32_A
Length = 183
Score = 56.7 bits (138), Expect = 1e-09
Identities = 25/114 (21%), Positives = 38/114 (33%), Gaps = 24/114 (21%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +AL +++ V L EAGA++ R D G G
Sbjct: 76 GRTALLFVAGLGSDKCVRLLAEAGADLDHR--------------------DMRG----GL 111
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
L AA V L++ GA + +D G L + K G ++
Sbjct: 112 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF 165
Score = 52.1 bits (126), Expect = 5e-08
Identities = 24/148 (16%), Positives = 47/148 (31%), Gaps = 38/148 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ A A+ + ++ L+E +V D G
Sbjct: 44 YETPWWTAARKADEQALSQLLE-DRDVDAV--------------------DENGRT---- 78
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDS-FGNMILHMVVVNDKLDMFGYALRHPKTPA 286
L + A ++ LL ++GA D +D G LHM + ++ +
Sbjct: 79 -ALLFVAGLGSDKCVRLLAEAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV------- 130
Query: 287 SNG----ILNNDGFTPLTLSCQLGRADV 310
G + + G T L L+ ++ +
Sbjct: 131 ELGADIEVEDERGLTALELAREILKTTP 158
Score = 49.8 bits (120), Expect = 3e-07
Identities = 23/147 (15%), Positives = 35/147 (23%), Gaps = 43/147 (29%)
Query: 171 ALHLAIAYANN--ELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEY 228
A+ I + + A+V E
Sbjct: 15 AMEYLIEWKDGHSPSWVPSSYIAADVVSE----------------------------YET 46
Query: 229 PLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASN 288
P AA ++E + L+ DA D G L V
Sbjct: 47 PWWTAARKADEQALSQLL-EDRDVDAVDENGRTALLFVAGLGSDKCVRLLA-------EA 98
Query: 289 GI-LN----NDGFTPLTLSCQLGRADV 310
G L+ G T L ++ R +V
Sbjct: 99 GADLDHRDMRGGLTALHMAAGYVRPEV 125
Score = 39.4 bits (93), Expect = 0.001
Identities = 18/89 (20%), Positives = 27/89 (30%), Gaps = 25/89 (28%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +ALH+A Y E+V L+E GA++ D GL
Sbjct: 110 GLTALHMAAGYVRPEVVEALVELGADIEVE--------------------DERGLT---- 145
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKD 256
L A + + G +
Sbjct: 146 -ALELAREILKTTPKGNPMQFGRRIGLEK 173
>3ehr_A Osteoclast-stimulating factor 1; beta barrel, helix-turn-helix,
SH3, ankyrin repeat, signaling protein, ANK repeat,
cytoplasm, phosphoprotein; 1.95A {Homo sapiens} PDB:
3ehq_A
Length = 222
Score = 57.3 bits (139), Expect = 2e-09
Identities = 19/144 (13%), Positives = 38/144 (26%), Gaps = 29/144 (20%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ LH A N + + ++ V D G
Sbjct: 73 IDNPLHEAAKRGNLSWLRECLDNRVGVNGL--------------------DKAGST---- 108
Query: 228 YPLSWAACCSNESVYNLLID-SGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPA 286
L WA ++ + +L + ++ G+ LH D+ L A
Sbjct: 109 -ALYWACHGGHKDIVEMLFTQPNIELNQQNKLGDTALHAAAWKGYADIVQLLLAK---GA 164
Query: 287 SNGILNNDGFTPLTLSCQLGRADV 310
+ N + ++ A +
Sbjct: 165 RTDLRNIEKKLAFDMATNAACASL 188
Score = 51.9 bits (125), Expect = 9e-08
Identities = 20/140 (14%), Positives = 40/140 (28%), Gaps = 29/140 (20%)
Query: 168 GASALHLAIAYANNELVADLI-EAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLG 226
G++AL+ A + ++V L + + Q+ + G
Sbjct: 106 GSTALYWACHGGHKDIVEMLFTQPNIELNQQ--------------------NKLG----- 140
Query: 227 EYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPA 286
+ L AA + LL+ GA D ++ + M + A
Sbjct: 141 DTALHAAAWKGYADIVQLLLAKGARTDLRNIEKKLAFDMATNAACASLLKKKQGT---DA 197
Query: 287 SNGILNNDGFTPLTLSCQLG 306
+ N + + S
Sbjct: 198 VRTLSNAEDYLDDEDSDLEH 217
Score = 50.7 bits (122), Expect = 2e-07
Identities = 24/184 (13%), Positives = 43/184 (23%), Gaps = 40/184 (21%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVAD 186
G+ + + R L + + + + + L+
Sbjct: 12 GQVKVFRALYTF---EPRTPDELYI-----EEGDIIYITDMSDTNWWKGTSKGRTGLIPS 63
Query: 187 LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLI 246
A + + PL AA N S +
Sbjct: 64 NYVAEQAES------------------------------IDNPLHEAAKRGNLSWLRECL 93
Query: 247 DSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPLTLSCQLG 306
D+ + D G+ L+ D+ P N G T L + G
Sbjct: 94 DNRVGVNGLDKAGSTALYWACHGGHKDIVEMLFTQPN--IELNQQNKLGDTALHAAAWKG 151
Query: 307 RADV 310
AD+
Sbjct: 152 YADI 155
Score = 42.2 bits (100), Expect = 1e-04
Identities = 9/91 (9%), Positives = 19/91 (20%), Gaps = 8/91 (8%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G+ + A + L + + + +
Sbjct: 12 GQVKVFRALYTFEPRTPDELYIEEGDIIYITDMSDTNWWKGTSKGRTGLIPSNYVAEQ-- 69
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLE 316
PL + + G RE L+
Sbjct: 70 ------AESIDNPLHEAAKRGNLSWLRECLD 94
>3ui2_A Signal recognition particle 43 kDa protein, chlor; ankyrin repeat,
chromodomain, aromatic CAGE, signal recognit particle,
protein targeting; 3.18A {Arabidopsis thaliana} PDB:
1x3q_A 2hug_A
Length = 244
Score = 57.6 bits (140), Expect = 2e-09
Identities = 27/143 (18%), Positives = 44/143 (30%), Gaps = 30/143 (20%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +AL +++ V L EAGA++ R D G G
Sbjct: 77 GRTALLFVAGLGSDKCVRLLAEAGADLDHR--------------------DMRG----GL 112
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
L AA V L++ GA + +D G L + K G ++
Sbjct: 113 TALHMAAGYVRPEVVEALVELGADIEVEDERGLTALELAREILKTTPKGNPMQF----GR 168
Query: 288 NGILNNDGFTPLTLSCQLGRADV 310
+ + + A+V
Sbjct: 169 R--IGLEKVINVLEGQVFEYAEV 189
Score = 52.6 bits (127), Expect = 7e-08
Identities = 32/189 (16%), Positives = 60/189 (31%), Gaps = 47/189 (24%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVAD 186
GE + LI H+ ++ DVV + A A+ + ++
Sbjct: 13 GEGAMEYLIEWKDG-HSPSWVPSSY----IAADVVSE----YETPWWTAARKADEQALSQ 63
Query: 187 LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLI 246
L+E +V D G L + A ++ LL
Sbjct: 64 LLE-DRDVDAV--------------------DEN-----GRTALLFVAGLGSDKCVRLLA 97
Query: 247 DSGAIPDAKDSFGNMI-LHMVVVNDKLDMFGYALRHPKTPASNG----ILNNDGFTPLTL 301
++GA D +D G + LHM + ++ + G + + G T L L
Sbjct: 98 EAGADLDHRDMRGGLTALHMAAGYVRPEVVEALV-------ELGADIEVEDERGLTALEL 150
Query: 302 SCQLGRADV 310
+ ++ +
Sbjct: 151 AREILKTTP 159
Score = 41.4 bits (98), Expect = 3e-04
Identities = 26/163 (15%), Positives = 42/163 (25%), Gaps = 52/163 (31%)
Query: 159 DVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTD 218
D+ + G +ALH+A Y E+V L+E GA++ D
Sbjct: 102 DLDHRDMRGGLTALHMAAGYVRPEVVEALVELGADIEVE--------------------D 141
Query: 219 YEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDS--------------------- 257
GL L A + + G +
Sbjct: 142 ERGLT-----ALELAREILKTTPKGNPMQFGRRIGLEKVINVLEGQVFEYAEVDEIVEKR 196
Query: 258 -FGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNNDGFTPL 299
G + ++V D D H + + D L
Sbjct: 197 GKGKDVEYLVRWKDGGDCEWVKGVH----VAE-DVAKDYEDGL 234
Score = 35.3 bits (82), Expect = 0.033
Identities = 14/111 (12%), Positives = 28/111 (25%), Gaps = 17/111 (15%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYL-- 225
G +AL LA + ++ G + + + + +Y + +
Sbjct: 144 GLTALELAREILKTTPKGNPMQFGRRIGLEKVINVLE---------GQVFEYAEVDEIVE 194
Query: 226 ----GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKL 272
G+ + A AKD L V +
Sbjct: 195 KRGKGKDVEYLVRWKDGGDCEWVKGVHVAEDVAKD--YEDGLEYAVAESVI 243
>3d9h_A CDNA FLJ77766, highly similar to HOMO sapiens ankyrin repeat and
SOCS box-containing...; ASB9, ANK repeat, L-shaped,
structural protein; 2.20A {Homo sapiens}
Length = 285
Score = 57.5 bits (140), Expect = 3e-09
Identities = 26/159 (16%), Positives = 49/159 (30%), Gaps = 35/159 (22%)
Query: 155 RLSQDVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPS 214
RL + + G+ S +H A + + + +LI G V D +P
Sbjct: 46 RLLSNPLMGDAVSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITA-------DHVSP--- 95
Query: 215 RHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
L A + S +L+ GA + + + L V+ D
Sbjct: 96 ---------------LHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDC 140
Query: 275 FGYALRHPKTPASNGI---LNNDGFTPLTLSCQLGRADV 310
L +G +D +P+ + + G +
Sbjct: 141 VNLLL-------QHGASVQPESDLASPIHEAARRGHVEC 172
Score = 52.1 bits (126), Expect = 1e-07
Identities = 23/146 (15%), Positives = 42/146 (28%), Gaps = 36/146 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ L A + + V L++ GA+V + + +
Sbjct: 125 WHTPLFNACVSGSWDCVNLLLQHGASV---------------------QPESDLAS---- 159
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
P+ AA + N LI G D K S L++ N + L
Sbjct: 160 -PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL-------E 211
Query: 288 NGI---LNNDGFTPLTLSCQLGRADV 310
+G +PL + ++
Sbjct: 212 SGADVNQGKGQDSPLHAVVRTASEEL 237
Score = 51.7 bits (125), Expect = 2e-07
Identities = 24/107 (22%), Positives = 39/107 (36%), Gaps = 26/107 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ L+LA V L+E+GA+V Q + Q +P
Sbjct: 190 LGTPLYLACENQQRACVKKLLESGADVNQ--------GKGQDSP---------------- 225
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDM 274
L ++E + LL+D GA AK++ G + +V L
Sbjct: 226 --LHAVVRTASEELACLLMDFGADTQAKNAEGKRPVELVPPESPLAQ 270
Score = 51.3 bits (124), Expect = 3e-07
Identities = 25/151 (16%), Positives = 49/151 (32%), Gaps = 25/151 (16%)
Query: 174 LAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEY----- 228
+ ++ ++ + L+ G+++ ++ D P+ D+ G+ L
Sbjct: 1 MGSSHHHHHHSSGLVPRGSHMA--SMDGKQGGMDGSK--PAGPRDFPGIRLLSNPLMGDA 56
Query: 229 -----PLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPK 283
P+ AA ++ LI G + + LH + L L
Sbjct: 57 VSDWSPMHEAAIHGHQLSLRNLISQGWAVNIITADHVSPLHEACLGGHLSCVKILL---- 112
Query: 284 TPASNG----ILNNDGFTPLTLSCQLGRADV 310
+G + D TPL +C G D
Sbjct: 113 ---KHGAQVNGVTADWHTPLFNACVSGSWDC 140
Score = 47.5 bits (114), Expect = 4e-06
Identities = 27/147 (18%), Positives = 41/147 (27%), Gaps = 37/147 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
AS +H A + E V LI G N+ D +
Sbjct: 157 LASPIHEAARRGHVECVNSLIAYGGNI------------DHKISH-------------LG 191
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL A + L++SGA + + LH VV ++ +
Sbjct: 192 TPLYLACENQQRACVKKLLESGADVNQGKG-QDSPLHAVVRTASEELACLLM-------D 243
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
G N +G P+ L
Sbjct: 244 FGADTQAKNAEGKRPVELVPPESPLAQ 270
Score = 34.0 bits (79), Expect = 0.094
Identities = 18/89 (20%), Positives = 28/89 (31%), Gaps = 27/89 (30%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
S LH + A+ EL L++ GA+ + + EG
Sbjct: 222 QDSPLHAVVRTASEELACLLMDFGADTQAK--------------------NAEGKR---- 257
Query: 228 YPLSWAACCSNESVYNLLIDSGA-IPDAK 255
P+ S + L GA +P K
Sbjct: 258 -PVELVPPESPLAQL-FLEREGASLPKPK 284
>3ljn_A Hypothetical protein; ankyrin, structural genomics, PSI, structural
genomics of pathogenic protozoa consortium, SGPP, ANK
repeat; 2.90A {Leishmania major}
Length = 364
Score = 58.0 bits (141), Expect = 3e-09
Identities = 26/175 (14%), Positives = 53/175 (30%), Gaps = 39/175 (22%)
Query: 168 GASALHLAIAYANN--ELVADLIEAGANVTQRAIGSFFLPRDQQTP-------------- 211
G +ALH + E++ L++ GA+ T + + +TP
Sbjct: 138 GQTALHWCVGLGPEYLEMIKILVQLGASPTAKD-------KADETPLMRAMEFRNREALD 190
Query: 212 ------RPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHM 265
+ G L WA + E V ++ G + +D+ + L++
Sbjct: 191 LMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMRFVEMGIDVNMEDNEHTVPLYL 250
Query: 266 VVVNDKLDMFGYALRH------PKTPASNG----ILNNDGFTPLTLSCQLGRADV 310
V + + L+ P NG + + + +V
Sbjct: 251 SVRAAMVLLTKELLQKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEV 305
Score = 57.6 bits (140), Expect = 4e-09
Identities = 28/158 (17%), Positives = 46/158 (29%), Gaps = 30/158 (18%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTP----RPSRHTDYEGL- 222
G +HLA+ +LV L+E Q P + +
Sbjct: 84 GQKPIHLAVMANKTDLVVALVEGAKE-------------RGQMPESLLNECDEREVNEIG 130
Query: 223 ----AYLGEYPLSWAACCSNES--VYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFG 276
G+ L W E + +L+ GA P AKD L + +
Sbjct: 131 SHVKHCKGQTALHWCVGLGPEYLEMIKILVQLGASPTAKDKADETPLMRAMEFRNREALD 190
Query: 277 YALRHPKTPASNG----ILNNDGFTPLTLSCQLGRADV 310
+ P+ + N G + L + + DV
Sbjct: 191 LMMDTV--PSKSSLRLDYANKQGNSHLHWAILINWEDV 226
Score = 54.5 bits (132), Expect = 4e-08
Identities = 22/143 (15%), Positives = 38/143 (26%), Gaps = 36/143 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+H+A + V LIE G + T + + G
Sbjct: 20 NMEKIHVAARKGQTDEVRRLIETGVSPTIQ--------------------NRFGCT---- 55
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
L A L G + G +H+ V+ +K D+ +
Sbjct: 56 -ALHLACKFGCVDTAKYLASVGEVHSLWH--GQKPIHLAVMANKTDLVVALV-------E 105
Query: 288 NGILNNDGFTPLTLSCQLGRADV 310
G P +L + +V
Sbjct: 106 GA--KERGQMPESLLNECDEREV 126
Score = 54.1 bits (131), Expect = 5e-08
Identities = 16/132 (12%), Positives = 29/132 (21%), Gaps = 15/132 (11%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
L+L++ A L +L++ Q T +
Sbjct: 244 HTVPLYLSVRAAMVLLTKELLQKTDVF------------LIQACPYHNGTTVLPDRVVWL 291
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
+ AA S + V LL + + G + L A
Sbjct: 292 DFVPAAADPSKQEVLQLLQEKLDEVVRSLNTGAGGAVKRKKKAAPAVKRMKLAP---SAP 348
Query: 288 NGILNNDGFTPL 299
+
Sbjct: 349 VRTRSRSRARSS 360
Score = 52.9 bits (128), Expect = 1e-07
Identities = 21/197 (10%), Positives = 41/197 (20%), Gaps = 44/197 (22%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVAD 186
ET L + + ++ P S ++ G S LH AI ++
Sbjct: 173 DETPLMRAMEFR---NREALDLMMDTVPSKSSLRLDYANKQGNSHLHWAILINWEDVAMR 229
Query: 187 LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLI 246
+E G +V + PL + + + L+
Sbjct: 230 FVEMGIDVNMED-------NEHTV------------------PLYLSVRAAMVLLTKELL 264
Query: 247 DSGAI-------------PDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILNN 293
+ + K ++ N
Sbjct: 265 QKTDVFLIQACPYHNGTTVLPDRVVWLDFVPAAADPSKQEVLQLLQEK---LDEVVRSLN 321
Query: 294 DGFTPLTLSCQLGRADV 310
G + V
Sbjct: 322 TGAGGAVKRKKKAAPAV 338
Score = 46.8 bits (112), Expect = 1e-05
Identities = 8/97 (8%), Positives = 18/97 (18%), Gaps = 25/97 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ A + E++ L E V + G
Sbjct: 290 WLDFVPAAADPSKQEVLQLLQEKLDEVVRS--------------------LNTGAG---- 325
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILH 264
+ +V + + A +
Sbjct: 326 -GAVKRKKKAAPAVKRMKLAPSAPVRTRSRSRARSSA 361
>2rfm_A Putative ankyrin repeat protein TV1425; ANK repeat, protein
binding; HET: BU2 GOL; 1.65A {Thermoplasma volcanium}
Length = 192
Score = 55.9 bits (136), Expect = 3e-09
Identities = 25/147 (17%), Positives = 47/147 (31%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G++AL A+ + L+ G+NV + D+ G
Sbjct: 68 GSTALIWAVKNNRLGIAEKLLSKGSNVNTK--------------------DFSGKT---- 103
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL W+ + L++ GA + ++ G L + + ++ L
Sbjct: 104 -PLMWSIIFGYSEMSYFLLEHGANVNDRNLEGETPLIVASKYGRSEIVKKLL-------E 155
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
G + G T + GR +V
Sbjct: 156 LGADISARDLTGLTAEASARIFGRQEV 182
Score = 54.3 bits (132), Expect = 1e-08
Identities = 26/147 (17%), Positives = 49/147 (33%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ L +A + L+E + + D E G
Sbjct: 35 NRTPLMVACMLGMENAIDKLVENFDKLEDK--------------------DIE-----GS 69
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
L WA + + L+ G+ + KD G L ++ +M + L
Sbjct: 70 TALIWAVKNNRLGIAEKLLSKGSNVNTKDFSGKTPLMWSIIFGYSEMSYFLL-------E 122
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
+G N +G TPL ++ + GR+++
Sbjct: 123 HGANVNDRNLEGETPLIVASKYGRSEI 149
Score = 45.8 bits (110), Expect = 7e-06
Identities = 25/147 (17%), Positives = 45/147 (30%), Gaps = 42/147 (28%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + + N+ + L + +T
Sbjct: 8 GEIVEKIKDEKSINQNLDFLRNYRDS-------------YNRT----------------- 37
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL A E+ + L+++ + KD G+ L V N++L + L S
Sbjct: 38 -PLMVACMLGMENAIDKLVENFDKLEDKDIEGSTALIWAVKNNRLGIAEKLL-------S 89
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
G + G TPL S G +++
Sbjct: 90 KGSNVNTKDFSGKTPLMWSIIFGYSEM 116
>3hra_A Ankyrin repeat family protein; structural protein; 1.69A
{Enterococcus faecalis}
Length = 201
Score = 55.9 bits (136), Expect = 3e-09
Identities = 23/144 (15%), Positives = 44/144 (30%), Gaps = 29/144 (20%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ L A ++ L + V + D + G
Sbjct: 6 VGALLEAANQRDTKKVKEILQDTTYQVDE---------VDTE----------------GN 40
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL+ A ++ + LID GA + ++S + + ++ Y L+H
Sbjct: 41 TPLNIAVHNNDIEIAKALIDRGADINLQNSISDSPYLYAGAQGRTEILAYMLKH---ATP 97
Query: 288 N-GILNNDGFTPLTLSCQLGRADV 310
+ N G L + + G D
Sbjct: 98 DLNKHNRYGGNALIPAAEKGHIDN 121
Score = 42.8 bits (102), Expect = 9e-05
Identities = 39/211 (18%), Positives = 67/211 (31%), Gaps = 50/211 (23%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDV-VEGEEYLGASALHLAIAYANNELVA 185
LL D ++ L V+ + G + L++A+ + E+
Sbjct: 6 VGALLEAANQRD---TKKVKEILQ------DTTYQVDEVDTEGNTPLNIAVHNNDIEIAK 56
Query: 186 DLIEAGANVTQRAIGSFFLPRDQQTP--RPSRHTDYEGLAYL--------------GEYP 229
LI+ GA++ + +P E LAY+ G
Sbjct: 57 ALIDRGADINLQN-------SISDSPYLYAGAQGRTEILAYMLKHATPDLNKHNRYGGNA 109
Query: 230 LSWAACCSNESVYNLLIDSG-AIPDAKDSFGNMILHMVVV-----NDKLDMFGYALRHPK 283
L AA + LL++ G D ++ FG L V D+ +
Sbjct: 110 LIPAAEKGHIDNVKLLLEDGREDIDFQNDFGYTALIEAVGLREGNQLYQDIVKLLM---- 165
Query: 284 TPASNG----ILNNDGFTPLTLSCQLGRADV 310
NG I +N G T + + Q G ++
Sbjct: 166 ---ENGADQSIKDNSGRTAMDYANQKGYTEI 193
>2vge_A RELA-associated inhibitor; iaspp, nucleus, apoptosis, repressor,
cytoplasm, phosphorylation, P53 binding protein, ANK
repeat, SH3 domain; 2.10A {Homo sapiens}
Length = 229
Score = 56.1 bits (136), Expect = 4e-09
Identities = 35/146 (23%), Positives = 47/146 (32%), Gaps = 31/146 (21%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +ALH AI AN +V LI AGANV D G
Sbjct: 54 GITALHNAICGANYSIVDFLITAGANVNSP--------------------DSH-----GW 88
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKD-SFGNMILHMVVVNDK--LDMFGYALRHPKT 284
PL AA C++ + L+ GA A S G + D Y
Sbjct: 89 TPLHCAASCNDTVICMALVQHGAAIFATTLSDGATAFEKCDPYREGYADCATYLADV--- 145
Query: 285 PASNGILNNDGFTPLTLSCQLGRADV 310
S G++N+ L ++
Sbjct: 146 EQSMGLMNSGAVYALWDYSAEFGDEL 171
Score = 49.2 bits (118), Expect = 8e-07
Identities = 26/133 (19%), Positives = 45/133 (33%), Gaps = 29/133 (21%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
L A E+V ++ + +Q + EG+
Sbjct: 21 PLVLLLDAALTGELEVVQQAVKEMNDPSQP--------------------NEEGIT---- 56
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
L A C +N S+ + LI +GA ++ DS G LH + + ++H A+
Sbjct: 57 -ALHNAICGANYSIVDFLITAGANVNSPDSHGWTPLHCAASCNDTVICMALVQH---GAA 112
Query: 288 -NGILNNDGFTPL 299
+DG T
Sbjct: 113 IFATTLSDGATAF 125
Score = 42.6 bits (101), Expect = 1e-04
Identities = 15/128 (11%), Positives = 31/128 (24%), Gaps = 33/128 (25%)
Query: 187 LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLI 246
++ + + R L L AA V +
Sbjct: 4 VLRKAGSPRKA-----------------RRARLNPLV-----LLLDAALTGELEVVQQAV 41
Query: 247 DSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG----ILNNDGFTPLTLS 302
P + G LH + + + + + G ++ G+TPL +
Sbjct: 42 KEMNDPSQPNEEGITALHNAICGANYSIVDFLI-------TAGANVNSPDSHGWTPLHCA 94
Query: 303 CQLGRADV 310
+
Sbjct: 95 ASCNDTVI 102
Score = 40.3 bits (95), Expect = 6e-04
Identities = 19/146 (13%), Positives = 36/146 (24%), Gaps = 26/146 (17%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTP----RPSRHTDYEGLA 223
G + LH A + + + L++ GA + + D T P R +
Sbjct: 87 GWTPLHCAASCNDTVICMALVQHGAAIFATTL------SDGATAFEKCDPYREGYADCAT 140
Query: 224 YL-------------GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVND 270
YL Y L W + +D ++
Sbjct: 141 YLADVEQSMGLMNSGAVYAL-WDYSAEFGDELSFREGESVTVLRRDGPEETDWWWAALHG 199
Query: 271 KLDM--FGYALRHPKTPASNGILNND 294
+ Y P+ + +
Sbjct: 200 QEGYVPRNYFGLFPRVKPQRSKVKHH 225
Score = 29.5 bits (67), Expect = 2.2
Identities = 8/74 (10%), Positives = 20/74 (27%), Gaps = 14/74 (18%)
Query: 244 LLIDSGAIPDAKDSFGN---MILHMVVVNDKLDMFGYALRHPKTPASNG----ILNNDGF 296
++ P ++L + +L++ A+ N +G
Sbjct: 3 SVLRKAGSPRKARRARLNPLVLLLDAALTGELEVVQQAV-------KEMNDPSQPNEEGI 55
Query: 297 TPLTLSCQLGRADV 310
T L + +
Sbjct: 56 TALHNAICGANYSI 69
>1d9s_A Cyclin-dependent kinase 4 inhibitor B; helix-turn-helix, ankyrin
repeat, signaling protein; NMR {Mus musculus} SCOP:
i.11.1.1
Length = 136
Score = 54.0 bits (131), Expect = 4e-09
Identities = 29/144 (20%), Positives = 44/144 (30%), Gaps = 30/144 (20%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ L A A E V L+EAGA+ R +
Sbjct: 12 SDAGLATAAARGQVETVRQLLEAGADPNALN-------RFGRR----------------- 47
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMI-LHMVVVNDKLDMFGYALRHPKTPA 286
P+ S + LL+ GA P+ D +H LD R A
Sbjct: 48 -PIQVMMMGSAQVA-ELLLLHGAEPNCADPATLTRPVHDAAREGFLDTLVVLHRA---GA 102
Query: 287 SNGILNNDGFTPLTLSCQLGRADV 310
+ + G P+ L+ + G D+
Sbjct: 103 RLDVCDAWGRLPVDLAEEQGHRDI 126
Score = 28.9 bits (66), Expect = 1.8
Identities = 5/26 (19%), Positives = 10/26 (38%)
Query: 168 GASALHLAIAYANNELVADLIEAGAN 193
G + LA + ++ L A +
Sbjct: 111 GRLPVDLAEEQGHRDIARYLHAATGD 136
>1ycs_B 53BP2, P53BP2; ankyrin repeats, SH3, tumor suppressor, multigene
family, nuclear protein, phosphorylation, disease
mutation, polymorphism; 2.20A {Homo sapiens} SCOP:
b.34.2.1 d.211.1.1 PDB: 4a63_B
Length = 239
Score = 55.3 bits (134), Expect = 7e-09
Identities = 19/147 (12%), Positives = 37/147 (25%), Gaps = 37/147 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +L + ++ I G V +
Sbjct: 5 GQVSLPPGKRTNLRKTGSERIAHGMRV--------------------KFNPL------PL 38
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
L ++ + +I P + G LH V ++ + +
Sbjct: 39 ALLLDSSLEGEFDLVQRIIYEVDDPSLPNDEGITALHNAVCAGHTEIVKFLV-------Q 91
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
G ++DG+TPL + V
Sbjct: 92 FGVNVNAADSDGWTPLHCAASCNNVQV 118
Score = 52.2 bits (126), Expect = 1e-07
Identities = 29/146 (19%), Positives = 44/146 (30%), Gaps = 31/146 (21%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +ALH A+ + E+V L++ G NV D +G
Sbjct: 70 GITALHNAVCAGHTEIVKFLVQFGVNVNAA--------------------DSDGWT---- 105
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNM---ILHMVVVNDKLDMFGYALRHPKT 284
PL AA C+N V L++SGA A + +
Sbjct: 106 -PLHCAASCNNVQVCKFLVESGAAVFAMTYSDMQTAADKCEEMEEGYTQCSQFLYGV--- 161
Query: 285 PASNGILNNDGFTPLTLSCQLGRADV 310
GI+N L ++
Sbjct: 162 QEKMGIMNKGVIYALWDYEPQNDDEL 187
Score = 46.8 bits (112), Expect = 5e-06
Identities = 21/136 (15%), Positives = 41/136 (30%), Gaps = 29/136 (21%)
Query: 167 LGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLG 226
L + L + +LV +I + + + EG+
Sbjct: 36 LPLALLLDSSLEGEFDLVQRIIYEVDDPSLP--------------------NDEGIT--- 72
Query: 227 EYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPA 286
L A C + + L+ G +A DS G LH + + + + + A
Sbjct: 73 --ALHNAVCAGHTEIVKFLVQFGVNVNAADSDGWTPLHCAASCNNVQVCKFLVES---GA 127
Query: 287 S-NGILNNDGFTPLTL 301
+ + +D T
Sbjct: 128 AVFAMTYSDMQTAADK 143
>2dzn_A Probable 26S proteasome regulatory subunit P28; ankyrin repeats,
A-helical domain, structural genomics, NPPSFA; 2.20A
{Saccharomyces cerevisiae} SCOP: d.211.1.1 PDB: 2dzo_A
1ixv_A 1wg0_A
Length = 228
Score = 55.1 bits (134), Expect = 8e-09
Identities = 28/145 (19%), Positives = 47/145 (32%), Gaps = 29/145 (20%)
Query: 168 GASALHLAIAYANNELVADLIE--AGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYL 225
G + H+A + N E+V L + ++ + +G+
Sbjct: 72 GWTPFHIACSVGNLEVVKSLYDRPLKPDLNKI--------------------TNQGVT-- 109
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
L A V LI++GA KD F + LH L + K
Sbjct: 110 ---CLHLAVGKKWFEVSQFLIENGASVRIKDKFNQIPLHRAASVGSLKLIELLCGLGK-- 164
Query: 286 ASNGILNNDGFTPLTLSCQLGRADV 310
++ + G+TPL + G D
Sbjct: 165 SAVNWQDKQGWTPLFHALAEGHGDA 189
Score = 51.7 bits (125), Expect = 1e-07
Identities = 29/193 (15%), Positives = 58/193 (30%), Gaps = 46/193 (23%)
Query: 126 LGETLLHVLIICDTKLHTRLARTLLKCFPRLSQ--DVVEGEEYLGASALHLAIAYANNEL 183
+ LH + + + LL S+ +++ ++ G LH ++++ +E+
Sbjct: 1 MSNYPLHQACMEN---EFFKVQELL-----HSKPSLLLQKDQD-GRIPLHWSVSFQAHEI 51
Query: 184 VADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYN 243
+ L+ NV T P A N V
Sbjct: 52 TSFLLSKMENVNLDDYPD----DSGWT------------------PFHIACSVGNLEVVK 89
Query: 244 LLID--SGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG----ILNNDGFT 297
L D + + G LH+ V ++ + + NG I +
Sbjct: 90 SLYDRPLKPDLNKITNQGVTCLHLAVGKKWFEVSQFLI-------ENGASVRIKDKFNQI 142
Query: 298 PLTLSCQLGRADV 310
PL + +G +
Sbjct: 143 PLHRAASVGSLKL 155
Score = 48.6 bits (117), Expect = 1e-06
Identities = 28/145 (19%), Positives = 46/145 (31%), Gaps = 28/145 (19%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA+ E+ LIE GA+V + + Q
Sbjct: 107 GVTCLHLAVGKKWFEVSQFLIENGASVRIKD-------KFNQI----------------- 142
Query: 228 YPLSWAACCSNESVYNLLIDSG-AIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPA 286
PL AA + + LL G + + +D G L + D + A
Sbjct: 143 -PLHRAASVGSLKLIELLCGLGKSAVNWQDKQGWTPLFHALAEGHGDAAVLLVEKYG--A 199
Query: 287 SNGILNNDGFTPLTLSCQLGRADVF 311
+++N G ++ F
Sbjct: 200 EYDLVDNKGAKAEDVALNEQVKKFF 224
>2y1l_E Darpin-8.4; hydrolase-inhibitor complex, DEVD darpin, ankyrin
repeat Pro ribosome display, apoptosis; 1.80A {Synthetic
source} PDB: 3noc_D* 4dx5_D* 2j8s_D* 4dx6_D* 4dx7_D*
3nog_D* 1mj0_A 1svx_A 2qyj_A 2bkg_A 2p2c_P 2bkk_B*
2v5q_C 2xee_A 2xeh_A 3q9n_C* 3q9u_C*
Length = 169
Score = 53.9 bits (131), Expect = 9e-09
Identities = 34/147 (23%), Positives = 56/147 (38%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA + E+V L++ GA+V D+ G+
Sbjct: 47 GWTPLHLAAFNGHLEIVEVLLKNGADVNAV--------------------DHAGMT---- 82
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA + + +L+ +GA +A D G+ LH+ + L++ L
Sbjct: 83 -PLRLAALFGHLEIVEVLLKNGADVNANDMEGHTPLHLAAMFGHLEIVEVLL-------K 134
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
NG + G T +S G D+
Sbjct: 135 NGADVNAQDKFGKTAFDISIDNGNEDL 161
Score = 53.1 bits (129), Expect = 2e-08
Identities = 30/147 (20%), Positives = 49/147 (33%), Gaps = 36/147 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
L A ++ V L+ GA+V D G
Sbjct: 14 LGKKLLEAARAGRDDEVRILMANGADVNAE--------------------DAS-----GW 48
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA + + +L+ +GA +A D G L + + L++ L
Sbjct: 49 TPLHLAAFNGHLEIVEVLLKNGADVNAVDHAGMTPLRLAALFGHLEIVEVLL-------K 101
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
NG + +G TPL L+ G ++
Sbjct: 102 NGADVNANDMEGHTPLHLAAMFGHLEI 128
Score = 44.3 bits (106), Expect = 2e-05
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 25/114 (21%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + L LA + + E+V L++ GA+V D EG
Sbjct: 80 GMTPLRLAALFGHLEIVEVLLKNGADVNAN--------------------DMEG-----H 114
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
PL AA + + +L+ +GA +A+D FG + + N D+ +
Sbjct: 115 TPLHLAAMFGHLEIVEVLLKNGADVNAQDKFGKTAFDISIDNGNEDLAEILQKL 168
>1ihb_A P18-INK4C(INK6), cyclin-dependent kinase 6 inhibitor; cell cycle
inhibitor, ankyrin repeat, CDK 4/6 inhibitor; 1.95A
{Homo sapiens} SCOP: d.211.1.1 PDB: 1bu9_A 1g3n_B 1mx4_A
1mx2_A 1mx6_A
Length = 162
Score = 53.5 bits (130), Expect = 1e-08
Identities = 30/147 (20%), Positives = 45/147 (30%), Gaps = 37/147 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ L A A + E + L++ NV + + G
Sbjct: 5 WGNELASAAARGDLEQLTSLLQNNVNVNAQ--------------------NGF-----GR 39
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
L + E L+ GA PD KD G ++H LD L
Sbjct: 40 TALQVMKLGNPEIA-RRLLLRGANPDLKDRTGFAVIHDAARAGFLDTLQTLL-------E 91
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
I +N+G PL L+ + G V
Sbjct: 92 FQADVNIEDNEGNLPLHLAAKEGHLRV 118
Score = 53.5 bits (130), Expect = 1e-08
Identities = 34/144 (23%), Positives = 54/144 (37%), Gaps = 30/144 (20%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G +AL + N E+ L+ GAN + D G A
Sbjct: 38 GRTALQVM-KLGNPEIARRLLLRGANPDLK--------------------DRTGFA---- 72
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
+ AA L++ A + +D+ GN+ LH+ L + + ++H AS
Sbjct: 73 -VIHDAARAGFLDTLQTLLEFQADVNIEDNEGNLPLHLAAKEGHLRVVEFLVKH---TAS 128
Query: 288 N-GILNNDGFTPLTLSCQLGRADV 310
N G N+ G T L+ GR +V
Sbjct: 129 NVGHRNHKGDTACDLARLYGRNEV 152
Score = 28.5 bits (65), Expect = 3.6
Identities = 10/25 (40%), Positives = 14/25 (56%)
Query: 168 GASALHLAIAYANNELVADLIEAGA 192
G +A LA Y NE+V+ + GA
Sbjct: 137 GDTACDLARLYGRNEVVSLMQANGA 161
>2xai_A ASB-9, ankyrin repeat and SOCS box protein 9; transcription
regulation, autoantibody; 2.58A {Homo sapiens}
Length = 261
Score = 55.5 bits (135), Expect = 1e-08
Identities = 23/150 (15%), Positives = 40/150 (26%), Gaps = 45/150 (30%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ L+LA V L+E+GA+V Q + Q +P
Sbjct: 134 LGTPLYLACENQQRACVKKLLESGADVNQ--------GKGQDSP---------------- 169
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPA- 286
L A ++E + LL+D GA AK++ G +
Sbjct: 170 --LHAVARTASEELACLLMDFGADTQAKNAEGKRPVE------------LVPPESPLAQL 215
Query: 287 --SNG----ILNNDGFTPLTLSCQLGRADV 310
++ +
Sbjct: 216 FLEREGPPSLMQLCRLRIRKCFGIQQHHKI 245
Score = 55.1 bits (134), Expect = 1e-08
Identities = 25/147 (17%), Positives = 43/147 (29%), Gaps = 37/147 (25%)
Query: 168 GASALHLAIAYANNELVAD-LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLG 226
S +H A A ++L LI G V D +
Sbjct: 3 DWSPMHEA-AIHGHQLSLRNLISQGWAVNIITA-------DHVS---------------- 38
Query: 227 EYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPA 286
PL A + S +L+ GA + + + L V+ D L
Sbjct: 39 --PLHEACLGGHLSCVKILLKHGAQVNGVTADWHTPLFNACVSGSWDCVNLLL------- 89
Query: 287 SNGI---LNNDGFTPLTLSCQLGRADV 310
+G +D +P+ + + G +
Sbjct: 90 QHGASVQPESDLASPIHEAARRGHVEC 116
Score = 53.2 bits (129), Expect = 5e-08
Identities = 26/147 (17%), Positives = 41/147 (27%), Gaps = 37/147 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
S LH A + V L++ GA V D T
Sbjct: 36 HVSPLHEACLGGHLSCVKILLKHGAQVNGVT-------ADWHT----------------- 71
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL A + NLL+ GA + +H ++ + +
Sbjct: 72 -PLFNACVSGSWDCVNLLLQHGASVQPESD-LASPIHEAARRGHVECVNSLI-------A 122
Query: 288 NG----ILNNDGFTPLTLSCQLGRADV 310
G + TPL L+C+ +
Sbjct: 123 YGGNIDHKISHLGTPLYLACENQQRAC 149
Score = 52.0 bits (126), Expect = 1e-07
Identities = 23/146 (15%), Positives = 42/146 (28%), Gaps = 36/146 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ L A + + V L++ GA+V + + +
Sbjct: 69 WHTPLFNACVSGSWDCVNLLLQHGASV---------------------QPESDLAS---- 103
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
P+ AA + N LI G D K S L++ N + L
Sbjct: 104 -PIHEAARRGHVECVNSLIAYGGNIDHKISHLGTPLYLACENQQRACVKKLL-------E 155
Query: 288 NGI---LNNDGFTPLTLSCQLGRADV 310
+G +PL + ++
Sbjct: 156 SGADVNQGKGQDSPLHAVARTASEEL 181
Score = 48.2 bits (116), Expect = 2e-06
Identities = 26/141 (18%), Positives = 41/141 (29%), Gaps = 37/141 (26%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
AS +H A + E V LI G N+ + T
Sbjct: 101 LASPIHEAARRGHVECVNSLIAYGGNIDHKI-------SHLGT----------------- 136
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL A + L++SGA + + + LH V ++ +
Sbjct: 137 -PLYLACENQQRACVKKLLESGADVN-QGKGQDSPLHAVARTASEELACLLM-------D 187
Query: 288 NG----ILNNDGFTPLTLSCQ 304
G N +G P+ L
Sbjct: 188 FGADTQAKNAEGKRPVELVPP 208
>1sw6_A Regulatory protein SWI6; transcription regulation, ankyrin repeats,
cell-cycle; 2.10A {Saccharomyces cerevisiae} SCOP:
d.211.1.1
Length = 327
Score = 52.7 bits (126), Expect = 1e-07
Identities = 31/163 (19%), Positives = 46/163 (28%), Gaps = 38/163 (23%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LH + AN ELV L++ G+N D GE
Sbjct: 131 GNTPLHWLTSIANLELVKHLVKHGSNRLYG--------------------DNM-----GE 165
Query: 228 YPLSWAACCSN----ESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHP- 282
L A N + LL +DS ILH +++ + A ++
Sbjct: 166 SCLVKAVKSVNNYDSGTFEALLDYLYPCLILEDSMNRTILHHIIITSGMTGCSAAAKYYL 225
Query: 283 --------KTPASNGILNNDGFTPLTLSCQLGRADVFREMLEL 317
K + R D E L+L
Sbjct: 226 DILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDL 268
Score = 42.3 bits (99), Expect = 2e-04
Identities = 27/162 (16%), Positives = 50/162 (30%), Gaps = 28/162 (17%)
Query: 127 GETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNE---- 182
GE+ L + + LL L ++ + + LH I +
Sbjct: 164 GESCLVKAVKSVNNYDSGTFEALLD---YLYPCLILEDSM-NRTILHHIIITSGMTGCSA 219
Query: 183 --------LVADLIEAGANVTQRAI-GSFFLPRDQQTPRPSRHTDYEGLAYL-------- 225
L+ +++ Q P D+ R + L ++
Sbjct: 220 AAKYYLDILMGWIVKKQNRPIQSGTNEKESKPNDKNGERKDSILENLDLKWIIANMLNAQ 279
Query: 226 ---GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILH 264
G+ L+ AA N S+ + L+D GA P + G +
Sbjct: 280 DSNGDTCLNIAARLGNISIVDALLDYGADPFIANKSGLRPVD 321
Score = 34.2 bits (78), Expect = 0.10
Identities = 17/150 (11%), Positives = 41/150 (27%), Gaps = 15/150 (10%)
Query: 161 VEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYE 220
E I ++L +D + + + + +Q+
Sbjct: 12 NENNGTDDNDRTAGPIITFTHDLTSDFLSSPLKIMKALPSPVVNDNEQKMK--------- 62
Query: 221 GLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALR 280
E L + + L + + +++ N V + L A
Sbjct: 63 -----LEAFLQRLLFPEIQEMPTSLNNDSSNRNSEGGSSNQQQQHVSFDSLLQEVNDAFP 117
Query: 281 HPKTPASNGILNNDGFTPLTLSCQLGRADV 310
+ + N ++ G TPL + ++
Sbjct: 118 NTQ-LNLNIPVDEHGNTPLHWLTSIANLEL 146
>2jab_A H10-2-G3; HER2, darpin, ankyrin repeat protein, membrane protein,
human epidermal growth factor receptor 2, de novo
protein; 1.70A {} PDB: 3hg0_D 2xzt_G 2xzd_G 2y0b_G
2v4h_C
Length = 136
Score = 49.7 bits (120), Expect = 1e-07
Identities = 29/144 (20%), Positives = 48/144 (33%), Gaps = 36/144 (25%)
Query: 171 ALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGEYPL 230
L A ++ V L+ GA+V + D GL PL
Sbjct: 17 KLLEAARAGQDDEVRILMANGADVNAK--------------------DEYGLT-----PL 51
Query: 231 SWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNG- 289
A + + +L+ +GA +A D+ G LH+ L++ L +G
Sbjct: 52 YLATAHGHLEIVEVLLKNGADVNAVDAIGFTPLHLAAFIGHLEIAEVLL-------KHGA 104
Query: 290 ---ILNNDGFTPLTLSCQLGRADV 310
+ G T +S G D+
Sbjct: 105 DVNAQDKFGKTAFDISIGNGNEDL 128
Score = 47.0 bits (113), Expect = 1e-06
Identities = 26/114 (22%), Positives = 44/114 (38%), Gaps = 25/114 (21%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + L+LA A+ + E+V L++ GA+V D G
Sbjct: 47 GLTPLYLATAHGHLEIVEVLLKNGADVNAV--------------------DAIG-----F 81
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRH 281
PL AA + + +L+ GA +A+D FG + + N D+ +
Sbjct: 82 TPLHLAAFIGHLEIAEVLLKHGADVNAQDKFGKTAFDISIGNGNEDLAEILQKL 135
>2l6b_A NR1C; ankyrin, consensus, repeat protein, ising model, DE NOV; NMR
{Escherichia coli}
Length = 115
Score = 48.9 bits (118), Expect = 2e-07
Identities = 27/136 (19%), Positives = 43/136 (31%), Gaps = 36/136 (26%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LH A + E V L+ GA+V R+ +D T
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARS-------KDGNT----------------- 44
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL AA + + LL+ GA +A+ GN H+ N ++ +
Sbjct: 45 -PLHLAAKNGHAEIVKLLLAKGADVNARSKDGNTPEHLAKKNGHHEIVKLLD-------A 96
Query: 288 NG----ILNNDGFTPL 299
G +
Sbjct: 97 KGADVNARSWGSSHHH 112
Score = 45.1 bits (108), Expect = 3e-06
Identities = 22/89 (24%), Positives = 35/89 (39%), Gaps = 11/89 (12%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL AA + L+ GA +A+ GN LH+ N ++ L
Sbjct: 9 GNTPLHNAAKNGHAEEVKKLLSKGADVNARSKDGNTPLHLAAKNGHAEIVKLLL------ 62
Query: 286 ASNG----ILNNDGFTPLTLSCQLGRADV 310
+ G + DG TP L+ + G ++
Sbjct: 63 -AKGADVNARSKDGNTPEHLAKKNGHHEI 90
Score = 43.9 bits (105), Expect = 9e-06
Identities = 22/97 (22%), Positives = 34/97 (35%), Gaps = 25/97 (25%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA + E+V L+ GA+V R+ +D T
Sbjct: 42 GNTPLHLAAKNGHAEIVKLLLAKGADVNARS-------KDGNT----------------- 77
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILH 264
P A + + LL GA +A+ + H
Sbjct: 78 -PEHLAKKNGHHEIVKLLDAKGADVNARSWGSSHHHH 113
>3twr_A Tankyrase-2; ankyrin repeat, protein-protein interaction, substrate
recru poly(ADP-ribosyl)ation; HET: PE8; 1.55A {Homo
sapiens} PDB: 3tws_A* 3twt_A* 3twv_A* 3tww_A 3twx_A
3twq_A 3twu_A 2y0i_S*
Length = 165
Score = 50.1 bits (121), Expect = 2e-07
Identities = 32/136 (23%), Positives = 47/136 (34%), Gaps = 36/136 (26%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
++ LH A Y +V L++ GA+V + D GL
Sbjct: 42 QSTPLHFAAGYNRVSVVEYLLQHGADVHAK--------------------DKGGLV---- 77
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPAS 287
PL A + V LL+ GA+ + D + LH K ++ L
Sbjct: 78 -PLHNACSYGHYEVAELLVKHGAVVNVADLWKFTPLHEAAAKGKYEICKLLL-------Q 129
Query: 288 NG----ILNNDGFTPL 299
+G N DG TPL
Sbjct: 130 HGADPTKKNRDGNTPL 145
Score = 48.9 bits (118), Expect = 5e-07
Identities = 28/148 (18%), Positives = 44/148 (29%), Gaps = 37/148 (25%)
Query: 168 GASALHLAIAYANNELVADLIEA-GANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLG 226
L A + E V L N R +
Sbjct: 8 ADRQLLEAAKAGDVETVKKLCTVQSVNC--------------------RDIEGR-----Q 42
Query: 227 EYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPA 286
PL +AA + SV L+ GA AKD G + LH ++ +
Sbjct: 43 STPLHFAAGYNRVSVVEYLLQHGADVHAKDKGGLVPLHNACSYGHYEVAELLV------- 95
Query: 287 SNG----ILNNDGFTPLTLSCQLGRADV 310
+G + + FTPL + G+ ++
Sbjct: 96 KHGAVVNVADLWKFTPLHEAAAKGKYEI 123
Score = 46.2 bits (111), Expect = 3e-06
Identities = 26/104 (25%), Positives = 35/104 (33%), Gaps = 25/104 (24%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G LH A +Y + E+ L++ GA V D
Sbjct: 75 GLVPLHNACSYGHYEVAELLVKHGAVVNVA--------------------DLWK-----F 109
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDK 271
PL AA + LL+ GA P K+ GN L +V D
Sbjct: 110 TPLHEAAAKGKYEICKLLLQHGADPTKKNRDGNTPLDLVKDGDT 153
Score = 32.7 bits (76), Expect = 0.15
Identities = 17/84 (20%), Positives = 28/84 (33%), Gaps = 26/84 (30%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
+ LH A A E+ L++ GA+ T++ RD T
Sbjct: 108 KFTPLHEAAAKGKYEICKLLLQHGADPTKKN-------RDGNT----------------- 143
Query: 228 YPLSWAACCSNESVYNLLIDSGAI 251
PL + + +LL A+
Sbjct: 144 -PLDLVK-DGDTDIQDLLRGDAAL 165
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 52.0 bits (124), Expect = 5e-07
Identities = 76/477 (15%), Positives = 147/477 (30%), Gaps = 166/477 (34%)
Query: 80 KTEYLKWRYRDSDQFVIPVEKVLSPLDPLSKWRDH-EACWQMQYRGSLGETLLHVL---- 134
+ ++ K ++ F E +P + + K+ + + + G + L L
Sbjct: 34 QEQFNKILPEPTEGFAADDEPT-TPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFE 92
Query: 135 --IICDTKLHTRLARTLLKCFP---RLSQDVVEGEEYLGA-------------SALHLAI 176
+ +H LA LL+ ++++++ Y+ A SAL A+
Sbjct: 93 NCYLEGNDIHA-LAAKLLQENDTTLVKTKELIK--NYITARIMAKRPFDKKSNSALFRAV 149
Query: 177 A------YA------NNE---------------LVADLIEAGAN-----VTQRAIGSFFL 204
A N + LV DLI+ A +
Sbjct: 150 GEGNAQLVAIFGGQGNTDDYFEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVF 209
Query: 205 PR--------DQQTPRPSRHTDYEGLAYLGEYPLSW------------AAC----CSNES 240
+ + + P + YL P+S +
Sbjct: 210 TQGLNILEWLENPSNTPDK-------DYLLSIPISCPLIGVIQLAHYVVTAKLLGFTPGE 262
Query: 241 VYNLLIDSG--------------AIPDAKDSFGNMILHMVVVNDKLDMFGYALR----HP 282
+ + L G A D+ +SF + + V +F +R +P
Sbjct: 263 LRSYL--KGATGHSQGLVTAVAIAETDSWESFFVSVRKAITV-----LFFIGVRCYEAYP 315
Query: 283 KTPASNGIL-----NNDGF-TPLTLSCQLGRADVFREMLELSCKEFWRYSNITCSAYPLN 336
T IL NN+G +P+ LS ++ +E ++ + N
Sbjct: 316 NTSLPPSILEDSLENNEGVPSPM-LSIS----NLTQEQVQDYVNKT-------------N 357
Query: 337 ALDTLLPDGR----TNWNSALFIILNGTKEAHLDMLDGGIIQRLLEEKWKT--------F 384
+ LP G+ + N A ++++G ++ L G+ L + K + F
Sbjct: 358 S---HLPAGKQVEISLVNGAKNLVVSGPPQS-LY----GLNLTLRKAKAPSGLDQSRIPF 409
Query: 385 AQRQ--FMKRLLILSL--HLLFMSLAVYFRPTD--RDEPLLGGTDWQSIARYCFEIG 435
++R+ F R L ++ H + A D ++ D Q I Y G
Sbjct: 410 SERKLKFSNRFLPVASPFHSHLLVPASDLINKDLVKNNVSFNAKDIQ-IPVYDTFDG 465
Score = 38.5 bits (89), Expect = 0.007
Identities = 22/148 (14%), Positives = 50/148 (33%), Gaps = 44/148 (29%)
Query: 142 HTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVADLIEAGANVTQRAIGS 201
H+ L L+ +++D+V+ A + + + Y + +DL ++++R +
Sbjct: 428 HSHL---LVPASDLINKDLVKNNVSFNAKDIQIPV-YDTFD-GSDLRVLSGSISERIV-- 480
Query: 202 FFLPRDQQTPRPSRHTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNM 261
D P+ W ++ + ++D G P G +
Sbjct: 481 -----DCII----------------RLPVKWETTTQFKATH--ILDFG--PGGASGLGVL 515
Query: 262 ILHM-------VVVNDKLDM-----FGY 277
V+V LD+ +G+
Sbjct: 516 THRNKDGTGVRVIVAGTLDINPDDDYGF 543
Score = 30.0 bits (67), Expect = 2.4
Identities = 10/67 (14%), Positives = 19/67 (28%), Gaps = 27/67 (40%)
Query: 12 VNVGSV--------LDRVISQASNEDDCLLYRLANYKNGGELVDAYNIGGQ--------V 55
+N G V L V+ + L+ + NY N+ Q
Sbjct: 1812 INPGRVAASFSQEALQYVVERVGKRTGWLV-EIVNY----------NVENQQYVAAGDLR 1860
Query: 56 EVEKLIK 62
++ +
Sbjct: 1861 ALDTVTN 1867
>1n0q_A 3ANK, 3 ankyrin repeats; structural protein; 1.26A {} SCOP:
k.37.1.1
Length = 93
Score = 46.6 bits (112), Expect = 6e-07
Identities = 27/89 (30%), Positives = 40/89 (44%), Gaps = 11/89 (12%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
G PL AA + V LL+++GA +AKD G LH+ N L++ L
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLEVVKLLL------ 55
Query: 286 ASNG----ILNNDGFTPLTLSCQLGRADV 310
G + +G TPL L+ + G +V
Sbjct: 56 -EAGADVNAKDKNGRTPLHLAARNGHLEV 83
Score = 44.3 bits (106), Expect = 5e-06
Identities = 31/106 (29%), Positives = 47/106 (44%), Gaps = 25/106 (23%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
G + LHLA + E+V L+EAGA+V + ++ +T
Sbjct: 2 GRTPLHLAARNGHLEVVKLLLEAGADVNAKD-------KNGRT----------------- 37
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLD 273
PL AA + V LL+++GA +AKD G LH+ N L+
Sbjct: 38 -PLHLAARNGHLEVVKLLLEAGADVNAKDKNGRTPLHLAARNGHLE 82
>2zgd_A 3 repeat synthetic ankyrin; ankyrin repeat, hydroxylated, de novo
protein; 1.90A {Synthetic} PDB: 2zgg_A 2xen_A
Length = 110
Score = 44.9 bits (107), Expect = 4e-06
Identities = 23/110 (20%), Positives = 38/110 (34%), Gaps = 25/110 (22%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAYLGE 227
L A ++ V L+ GA+V + ++ T
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAKD-------KNGST----------------- 59
Query: 228 YPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGY 277
PL AA + V LL+++GA A+D FG + + N D+
Sbjct: 60 -PLHLAARNGHLEVVKLLLEAGADVXAQDKFGKTAFDISIDNGNEDLAEI 108
Score = 41.8 bits (99), Expect = 5e-05
Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 3/87 (3%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
L AA + +L+ +GA AKD G+ LH+ N L++ L
Sbjct: 24 LGKKLLEAARAGQDDEVRILMANGADVAAKDKNGSTPLHLAARNGHLEVVKLLLEA---G 80
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFR 312
A + G T +S G D+
Sbjct: 81 ADVXAQDKFGKTAFDISIDNGNEDLAE 107
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.9 bits (113), Expect = 8e-06
Identities = 91/604 (15%), Positives = 169/604 (27%), Gaps = 168/604 (27%)
Query: 4 LCCGGNSSVN--VGSVLDR----VISQASNE--DDCLLYRLANYK-----NGGELVDAYN 50
L V V VL ++S E ++ R+ + N ++ YN
Sbjct: 71 LLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYN 130
Query: 51 IGGQVEVEKL------IKEQFGVLMYND-GTGQVIDKTEYLKWRYRDSDQFVIPVEKV-- 101
+ KL ++ VL+ G+G KT K+
Sbjct: 131 VSRLQPYLKLRQALLELRPAKNVLIDGVLGSG----KTWVALDVCLSYKVQCKMDFKIFW 186
Query: 102 LSPLDPLSKWRDHEACWQMQYRGSLGETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVV 161
L+ L E +M + LL+ + D +R + + +
Sbjct: 187 LN----LKNCNSPETVLEML------QKLLYQI---DPNWTSRSDHS-----SNIKLRIH 228
Query: 162 EGEEYLGASALHLAIAYANNELVADLIEAGANV-TQRAIGSFFLPRDQQ-----TPRPSR 215
+ L L + Y N LV NV +A +F + T R +
Sbjct: 229 SIQAEL--RRLLKSKPYENCLLVLL------NVQNAKAWNAF----NLSCKILLTTRFKQ 276
Query: 216 HTDYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMF 275
TD+ A L + L D + K L L
Sbjct: 277 VTDFLSAATTTHISL-------DHHSMTLTPD-----EVKSLLLK-YLDCRP--QDL--- 318
Query: 276 GYALRHPKTPASNGILNNDGFTPLTLSCQLGRADVFREMLELSCKEFWRYSN-------I 328
P+ P LS + + R+ L + W++ N I
Sbjct: 319 ------PRE-VLTTN-------PRRLS-IIAES--IRDGLATW--DNWKHVNCDKLTTII 359
Query: 329 TCSAYPLNALD-----------TLLPDGRTNWNSALFIIL--NGTKEAHLDMLDGGIIQR 375
S LN L+ ++ P + + L ++ + K + +++
Sbjct: 360 ESS---LNVLEPAEYRKMFDRLSVFPPS-AHIPTILLSLIWFDVIKSDVMVVVNKLHKYS 415
Query: 376 LLEEKWKTFAQRQFMKRLLILSLHLLFMSLAVYFRPTDRDEP-----LLGGTDWQSIARY 430
L+E++ K +S+ +++ L + +E ++ + +
Sbjct: 416 LVEKQPKES----------TISIPSIYLEL----KVKLENEYALHRSIV--DHYNIPKTF 459
Query: 431 CFEIGTICGVVSYIIFQQGGEIKNQGFSSFMKQLKN-EPAKLIFLISNIMILSCIPFRIM 489
+ + Y +S LKN E + + L + L FR +
Sbjct: 460 DSDDLIPPYLDQYF------------YSHIGHHLKNIEHPERMTLFRMVF-LD---FRFL 503
Query: 490 GDKKTEEAILIFAVPGSWFLLM---FFAGAIRLTGPFVTMVYSMITGDMLTLATNGRDTC 546
K ++ A L F+ I P Y + +L +
Sbjct: 504 EQKIRHDSTAWNASGSILNTLQQLKFYKPYICDNDP----KYERLVNAILDFLPKIEENL 559
Query: 547 FKSK 550
SK
Sbjct: 560 ICSK 563
Score = 43.7 bits (102), Expect = 1e-04
Identities = 26/152 (17%), Positives = 56/152 (36%), Gaps = 28/152 (18%)
Query: 45 LVDAYNIGGQVEVEKLIKEQ-----FGVLMYNDGTGQVIDKTEYLKWRYRDSDQFVIPVE 99
+VD YNI + + LI + + ++ + ++ + + D +F +E
Sbjct: 449 IVDHYNIPKTFDSDDLIPPYLDQYFYSHIGHHLKNIEHPERMTLFRMVFLD-FRF---LE 504
Query: 100 KVLSPLDPLSKWRDHEACWQMQYRGSLGETLLHVLI----ICDTKLH-TRLARTLLKCFP 154
+ K R W GS+ TL + ICD RL +L P
Sbjct: 505 Q---------KIRHDSTAWNA--SGSILNTLQQLKFYKPYICDNDPKYERLVNAILDFLP 553
Query: 155 RLSQDVVEGEEYLGASALHLAIAYANNELVAD 186
++ ++++ + L +A+ + + +
Sbjct: 554 KIEENLICSKY---TDLLRIALMAEDEAIFEE 582
Score = 32.5 bits (73), Expect = 0.38
Identities = 47/341 (13%), Positives = 105/341 (30%), Gaps = 119/341 (34%)
Query: 78 IDKTEYLKWRYRDSDQFVIPVEKVLSPLDP---------LSKWRDH--------EACWQM 120
+ + W++ + D+ +E L+ L+P LS + W
Sbjct: 341 LATWDN--WKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSVFPPSAHIPTILLSLIWF- 397
Query: 121 QYRGSLGETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYAN 180
+ ++ V+ KLH +L++ P+ E + +++L +
Sbjct: 398 ---DVIKSDVMVVV----NKLHK---YSLVEKQPK--------ESTISIPSIYLELKVKL 439
Query: 181 NELVADLIEAGANVTQRAIGSFFLPR--DQQTPRPSRHTDYEGLAYLGEYPLSWAACCSN 238
A + + + + +P+ D P Y +++G
Sbjct: 440 ENEYA--------LHRSIVDHYNIPKTFDSDDLIPPYLDQYF-YSHIG------------ 478
Query: 239 ESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGY---ALRHPKTP--ASNGILNN 293
++L + + M+ LD F + +RH T AS ILN
Sbjct: 479 ---HHL---KNIEHPERMTLFRMVF--------LD-FRFLEQKIRHDSTAWNASGSILNT 523
Query: 294 DGFTPLTLSCQLGRADVFREMLELSCKEFWRYSNITCSAYPLNALDTLLPDGRTNWNSAL 353
L + ++ + + ++ R +NA+ LP N
Sbjct: 524 -----------LQQLKFYKPYICDNDPKYERL---------VNAILDFLPKIEEN----- 558
Query: 354 FIILNGTKEAHLDMLDGGIIQRLLEEKWKTF---AQRQFMK 391
++ + D +++ L + + A +Q +
Sbjct: 559 --LICSK---YTD-----LLRIALMAEDEAIFEEAHKQVQR 589
Score = 31.7 bits (71), Expect = 0.83
Identities = 39/264 (14%), Positives = 66/264 (25%), Gaps = 74/264 (28%)
Query: 178 YANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRP---SRHTDY---EGLAYLGEYPLS 231
Y ++++ +A + +F Q P+ D+ A G L
Sbjct: 16 YQYKDILSVFEDA-------FVDNFDCKDVQDMPKSILSKEEIDHIIMSKDAVSGTLRLF 68
Query: 232 WAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGIL 291
W E + ++ + K F + + Y + + L
Sbjct: 69 WTLLSKQEEMVQKFVEEVLRINYK--FLMSPIKTEQRQPSMMTRMYIEQRDR-------L 119
Query: 292 NNDG--FTPLTLS------------CQL--------------GR----ADVFREMLELSC 319
ND F +S +L G+ DV
Sbjct: 120 YNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKVQCK 179
Query: 320 KE---FW-RYSNITCSAYPLNALDTLLPDGRTNWNSALFIILNGTKEAHLDMLDGGIIQR 375
+ FW N L L LL NW S N I R
Sbjct: 180 MDFKIFWLNLKNCNSPETVLEMLQKLLYQIDPNWTSRSDHSSN-------------IKLR 226
Query: 376 LLEEKWK---TFAQRQFMKRLLIL 396
+ + + + + LL+L
Sbjct: 227 IHSIQAELRRLLKSKPYENCLLVL 250
>1dcq_A PYK2-associated protein beta; zinc-binding module, ankyrin repeats,
metal binding protein; 2.10A {Mus musculus} SCOP:
d.211.1.1 g.45.1.1
Length = 278
Score = 44.6 bits (105), Expect = 4e-05
Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 6/106 (5%)
Query: 226 GEYPLSWAACCSNESVY---NLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHP 282
E L A + + + L+ + D + G+ LH + D + LR
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNLDKQTGKGSTALHYCCLTDNAECLKLLLRG- 227
Query: 283 KTPASNGILNNDGFTPLTLSCQLGRADVFREMLELSCKEFWRYSNI 328
AS I N G TPL ++ +L + + F + ++
Sbjct: 228 --KASIEIANESGETPLDIAKRLKHEHCEELLTQALSGRFNSHVHV 271
Score = 38.4 bits (89), Expect = 0.004
Identities = 14/85 (16%), Positives = 30/85 (35%), Gaps = 5/85 (5%)
Query: 113 DHEACWQMQYRGSLGETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASAL 172
D + ET LH+ + + + L+ + ++ + G++AL
Sbjct: 155 DLTEKIPLANGHEPDETALHLAVRSVDRTSLHIVDFLV-----QNSGNLDKQTGKGSTAL 209
Query: 173 HLAIAYANNELVADLIEAGANVTQR 197
H N E + L+ A++
Sbjct: 210 HYCCLTDNAECLKLLLRGKASIEIA 234
Score = 36.1 bits (83), Expect = 0.020
Identities = 19/103 (18%), Positives = 33/103 (32%), Gaps = 28/103 (27%)
Query: 168 GASALHLAIAYANN---ELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAY 224
+ALHLA+ + +V L++ N+ D+QT +
Sbjct: 169 DETALHLAVRSVDRTSLHIVDFLVQNSGNL------------DKQTGK------------ 204
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVV 267
G L + N LL+ A + + G L +
Sbjct: 205 -GSTALHYCCLTDNAECLKLLLRGKASIEIANESGETPLDIAK 246
>2b0o_E UPLC1; arfgap, structural genomics, structural genomics consortium,
SGC, metal binding protein; 2.06A {Homo sapiens}
Length = 301
Score = 41.9 bits (98), Expect = 3e-04
Identities = 21/87 (24%), Positives = 36/87 (41%), Gaps = 6/87 (6%)
Query: 226 GEYPLSWAACCSNESVYN---LLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHP 282
E L A +N++ +I +G DAK + GN LH + ++ D L+
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG- 248
Query: 283 KTPASNGILNNDGFTPLTLSCQLGRAD 309
A G +N G T L ++ + +
Sbjct: 249 --RALVGTVNEAGETALDIARKKHHKE 273
Score = 36.1 bits (83), Expect = 0.020
Identities = 20/103 (19%), Positives = 32/103 (31%), Gaps = 28/103 (27%)
Query: 168 GASALHLAIAYANN---ELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAY 224
LHLA+ AN LV +I+ G ++ D +
Sbjct: 190 EELVLHLAVKVANQASLPLVDFIIQNGGHL------------DAKAAD------------ 225
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVV 267
G L +AA + LL+ A+ + G L +
Sbjct: 226 -GNTALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 267
>3jue_A Arfgap with coiled-coil, ANK repeat and PH domain containing
protein 1; arfgap domain, zinc-binding module, GTPase
activ metal-binding, nitration; 2.30A {Homo sapiens}
Length = 368
Score = 42.1 bits (98), Expect = 4e-04
Identities = 21/97 (21%), Positives = 38/97 (39%), Gaps = 3/97 (3%)
Query: 226 GEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTP 285
PL A ++ L+ +GA + DS G LH + + L+
Sbjct: 235 NATPLIQATAANSLLACEFLLQNGANVNQADSAGRGPLHHATILGHTGLACLFLKR---G 291
Query: 286 ASNGILNNDGFTPLTLSCQLGRADVFREMLELSCKEF 322
A G +++G PLT++ + AD+ + +E
Sbjct: 292 ADLGARDSEGRDPLTIAMETANADIVTLLRLAKMREA 328
Score = 30.5 bits (68), Expect = 1.4
Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 19/100 (19%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTP----RPSRHTDYEGLA 223
G LH A + L ++ GA++ R + + P + + D L
Sbjct: 268 GRGPLHHATILGHTGLACLFLKRGADLGAR-------DSEGRDPLTIAMETANADIVTL- 319
Query: 224 YLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMIL 263
L A E+ D + +D F M
Sbjct: 320 ------LRLAKMREAEAAQGQAGDETYLDIFRD-FSLMAS 352
>2aja_A Ankyrin repeat family protein; NESG, Q5ZSV0, structural genomics,
PSI, protein structure initiative; 2.80A {Legionella
pneumophila} SCOP: a.118.24.1
Length = 376
Score = 39.5 bits (92), Expect = 0.002
Identities = 18/149 (12%), Positives = 47/149 (31%), Gaps = 4/149 (2%)
Query: 176 IAYANNELVADLIEAGANVTQRA--IGSFFLPRDQQTPRPSRHTDYEGL-AYLGEYPLSW 232
+ + E + + N+ Q + ++ ++ + +G+ + + + +
Sbjct: 42 MTLSYKEAIHIFLPGTKNMEQVRQLLCLYYAHYNRNAKQLWSDAHKKGIKSEVICFVAAI 101
Query: 233 AACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHPKTPASNGILN 292
C S LL+ S I + + N L + ++
Sbjct: 102 TGCSSALDTLCLLLTSDEIVKVIQAENYQAFRLAAENGHLHVLNRLCEL-APTEIMAMIQ 160
Query: 293 NDGFTPLTLSCQLGRADVFREMLELSCKE 321
+ + L+ + G V + EL+ E
Sbjct: 161 AENYHAFRLAAENGHLHVLNRLCELAPTE 189
Score = 36.1 bits (83), Expect = 0.026
Identities = 23/174 (13%), Positives = 40/174 (22%), Gaps = 39/174 (22%)
Query: 168 GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTP--RPSR--HTD----- 218
A LA + ++ L E I + + H
Sbjct: 128 NYQAFRLAAENGHLHVLNRLCELAPTEIMAMIQ-----AENYHAFRLAAENGHLHVLNRL 182
Query: 219 YEGLAYL--------GEYPLSWAACCSN-ESVYNLLIDSGAIPDAKDSFGNMILHMVVV- 268
E Y WAA +V N L+D + + V
Sbjct: 183 CELAPTEATAMIQAENYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNP 242
Query: 269 -----NDKLDMFGYALRHPKTPASNGILN-------NDGFTPLTLSCQLGRADV 310
++L A + +G+ + GF L + +
Sbjct: 243 FIARHVNRLKEMHDAFK---LSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVL 293
Score = 36.1 bits (83), Expect = 0.027
Identities = 28/198 (14%), Positives = 39/198 (19%), Gaps = 81/198 (40%)
Query: 168 GASALHLAIAYANN---ELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAY 224
A LA A N ++ L E I +
Sbjct: 163 NYHAFRLA---AENGHLHVLNRLCELAPTEATAMIQAE---------------------- 197
Query: 225 LGEYPLSWAACCSN-ESVYNLLIDSGAIPDAKDSFGNMILHMVVV--------------- 268
Y WAA +V N L+D + + V
Sbjct: 198 -NYYAFRWAAVGRGHHNVINFLLDCPVMLAYAEIHEFEYGEKYVNPFIARHVNRLKEMHD 256
Query: 269 ----------------------------------NDKLDMFGYALRHP--KTPASNGILN 292
LD + L P K A +
Sbjct: 257 AFKLSNPDGVFDLVTKSECLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIP 316
Query: 293 NDGFTPLTLSCQLGRADV 310
D L L+ +LG
Sbjct: 317 GDANELLRLALRLGNQGA 334
Score = 33.8 bits (77), Expect = 0.14
Identities = 13/71 (18%), Positives = 22/71 (30%)
Query: 124 GSLGETLLHVLIICDTKLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNEL 183
G +L LI + ++ R LL + L LA+ N
Sbjct: 275 CLQGFYMLRNLIRRNDEVLLDDIRFLLSIPGIKALAPTATIPGDANELLRLALRLGNQGA 334
Query: 184 VADLIEAGANV 194
A L+ + +
Sbjct: 335 CALLLSIPSVL 345
Score = 32.6 bits (74), Expect = 0.33
Identities = 21/124 (16%), Positives = 37/124 (29%), Gaps = 21/124 (16%)
Query: 159 DVVEGEEYL-GASALHLAIAYANNELVADLIEAGANVTQRAIGSFFLPRDQQTPRPSRHT 217
D+V E L G L I N+E++ D I ++ +
Sbjct: 268 DLVTKSECLQGFYMLRNLI-RRNDEVLLDDIRFLLSIPGIKALAPTATIPGD-------- 318
Query: 218 DYEGLAYLGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGY 277
L A N+ LL+ ++ + ++ +LD+
Sbjct: 319 --------ANELLRLALRLGNQGACALLLSIPSVLALTKANN---YYINETGGRLDLRAV 367
Query: 278 ALRH 281
AL H
Sbjct: 368 ALEH 371
>3lvq_E ARF-GAP with SH3 domain, ANK repeat and PH domain containing
protein 3, ADP-ribosylation...; GDP, ASAP3, UPLC1,
linkers, alternat splicing; HET: GDP; 3.38A {Homo
sapiens} PDB: 3lvr_E*
Length = 497
Score = 32.9 bits (75), Expect = 0.30
Identities = 18/103 (17%), Positives = 32/103 (31%), Gaps = 28/103 (27%)
Query: 168 GASALHLAIAYAN--NELVAD-LIEAGANVTQRAIGSFFLPRDQQTPRPSRHTDYEGLAY 224
LHLA+ AN + + D +I+ G ++ +G
Sbjct: 171 EELVLHLAVKVANQASLPLVDFIIQNGGHL--------------------DAKAADGNT- 209
Query: 225 LGEYPLSWAACCSNESVYNLLIDSGAIPDAKDSFGNMILHMVV 267
L +AA + LL+ A+ + G L +
Sbjct: 210 ----ALHYAALYNQPDCLKLLLKGRALVGTVNEAGETALDIAR 248
Score = 32.2 bits (73), Expect = 0.45
Identities = 22/107 (20%), Positives = 43/107 (40%), Gaps = 6/107 (5%)
Query: 226 GEYPLSWAACCSNES---VYNLLIDSGAIPDAKDSFGNMILHMVVVNDKLDMFGYALRHP 282
E L A +N++ + + +I +G DAK + GN LH + ++ D L+
Sbjct: 171 EELVLHLAVKVANQASLPLVDFIIQNGGHLDAKAADGNTALHYAALYNQPDCLKLLLKG- 229
Query: 283 KTPASNGILNNDGFTPLTLSCQLGRADVFREMLELSCKEFWRYSNIT 329
A G +N G T L ++ + + + + F ++
Sbjct: 230 --RALVGTVNEAGETALDIARKKHHKECEELLEQAQAGTFAFPLHVD 274
>2otd_A Glycerophosphodiester phosphodiesterase; structural genomics PSI-2,
protein structure initiative, midwest center for STR
genomics, hydrolase; 2.60A {Shigella flexneri}
Length = 247
Score = 28.7 bits (65), Expect = 4.0
Identities = 14/55 (25%), Positives = 20/55 (36%), Gaps = 2/55 (3%)
Query: 140 KLHTRLARTLLKCFPRLSQDVVEGEEYLGASALHLAIAYANNELVADLIEAGANV 194
+ L R LL D E LG ++HL + V L +AG +
Sbjct: 158 QAAPELPRGLL--LDEWRDDWRELTARLGCVSIHLNHKLLDKARVMQLKDAGLRI 210
>3dxt_A JMJC domain-containing histone demethylation PROT; JMJD2D, histone
demethylase, H3K9, jumonji domain-CONT protein 2D,
oxidoreductase; 1.80A {Homo sapiens} PDB: 3dxu_A*
2w2i_A*
Length = 354
Score = 28.4 bits (62), Expect = 6.5
Identities = 7/53 (13%), Positives = 18/53 (33%)
Query: 320 KEFWRYSNITCSAYPLNALDTLLPDGRTNWNSALFIILNGTKEAHLDMLDGGI 372
+++W+ Y + +L + WN + E ++ G+
Sbjct: 123 RKYWKNRIYNSPIYGADISGSLFDENTKQWNLGHLGTIQDLLEKECGVVIEGV 175
>3qvq_A Phosphodiesterase OLEI02445; structural genomics, PSI-biology,
midwest center for structu genomics, MCSG, alpha-beta
hydrolase, hydrolase; HET: MSE G3P; 1.60A {Oleispira
antarctica}
Length = 252
Score = 28.0 bits (63), Expect = 8.4
Identities = 10/40 (25%), Positives = 20/40 (50%)
Query: 155 RLSQDVVEGEEYLGASALHLAIAYANNELVADLIEAGANV 194
+ E E+L + LH+ ++ + + V+D+ AG V
Sbjct: 174 AIPSAWQERLEHLDCAGLHIHQSFFDVQQVSDIKAAGYKV 213
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.139 0.428
Gapped
Lambda K H
0.267 0.0902 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 8,547,730
Number of extensions: 525085
Number of successful extensions: 1680
Number of sequences better than 10.0: 1
Number of HSP's gapped: 1211
Number of HSP's successfully gapped: 297
Length of query: 550
Length of database: 6,701,793
Length adjustment: 98
Effective length of query: 452
Effective length of database: 3,965,535
Effective search space: 1792421820
Effective search space used: 1792421820
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (26.6 bits)