BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14475
         (169 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1OKC|A Chain A, Structure Of Mitochondrial AdpATP CARRIER IN COMPLEX WITH
           Carboxyatractyloside
 pdb|2C3E|A Chain A, The Bovine Mitochondrial Adp-Atp Carrier
          Length = 297

 Score = 36.2 bits (82), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 18/46 (39%), Positives = 22/46 (47%), Gaps = 1/46 (2%)

Query: 102 GVVQCLRYIVNHEGPKALFRGLVPNLIGVAPSRAIYFCAYSQSKKF 147
           G V C R I   EGPKA F+G   N++      A     Y + KKF
Sbjct: 252 GTVDCWRKIAKDEGPKAFFKGAWSNVL-RGMGGAFVLVLYDEIKKF 296



 Score = 33.5 bits (75), Expect = 0.056,   Method: Compositional matrix adjust.
 Identities = 18/64 (28%), Positives = 30/64 (46%), Gaps = 5/64 (7%)

Query: 98  RPSAGVVQCLRYIVNHEGPKALFRGLVPNLIGVAPSRAIYFCAYSQSKKFWNNILPPDTA 157
           R   G+  C+  I   +G + L++G   ++ G+   RA YF  Y  +K      + PD  
Sbjct: 151 REFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKG-----MLPDPK 205

Query: 158 LVHV 161
            VH+
Sbjct: 206 NVHI 209



 Score = 26.9 bits (58), Expect = 6.1,   Method: Compositional matrix adjust.
 Identities = 21/90 (23%), Positives = 41/90 (45%), Gaps = 18/90 (20%)

Query: 70  PYQRRRLNTQVLTISQFEPSSQSVHSTVRPSAGVVQCLRYIVNHEGPKALFRGLVPNLIG 129
           P +R +L  QV      + +S+ + S  +   G++ C+  I   +G  + +RG + N+I 
Sbjct: 27  PIERVKLLLQV------QHASKQI-SAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIR 79

Query: 130 VAPSRA-----------IYFCAYSQSKKFW 148
             P++A           I+     + K+FW
Sbjct: 80  YFPTQALNFAFKDKYKQIFLGGVDRHKQFW 109


>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
           Determined By Nmr Molecular Fragment Replacement
          Length = 303

 Score = 33.1 bits (74), Expect = 0.080,   Method: Compositional matrix adjust.
 Identities = 14/47 (29%), Positives = 25/47 (53%), Gaps = 2/47 (4%)

Query: 100 SAGVVQCLRYIVNHEGPKALFRGLVPNLIGVAPSRAIYFCAYSQSKK 146
           SAG   C   ++  EGP+A ++G +P+ + +     + F  Y Q K+
Sbjct: 240 SAG--HCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284



 Score = 28.9 bits (63), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 20/71 (28%), Positives = 33/71 (46%), Gaps = 8/71 (11%)

Query: 85  QFEPSSQSVHSTVRPSA-----GVVQCLRYIVNHEGPKALFRGLVPNLIGVAPSRAIYFC 139
           Q +  SQ +   VR +A     GV+  +  +V  EGP++L+ GLV  L       ++   
Sbjct: 30  QIQGESQGL---VRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIG 86

Query: 140 AYSQSKKFWNN 150
            Y   K+F+  
Sbjct: 87  LYDSVKQFYTK 97


>pdb|2DWU|A Chain A, Crystal Structure Of Glutamate Racemase Isoform Race1 From
           Bacillus Anthracis
 pdb|2DWU|B Chain B, Crystal Structure Of Glutamate Racemase Isoform Race1 From
           Bacillus Anthracis
 pdb|2DWU|C Chain C, Crystal Structure Of Glutamate Racemase Isoform Race1 From
           Bacillus Anthracis
          Length = 276

 Score = 28.1 bits (61), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 5/77 (6%)

Query: 32  VVKTRLQSSVGIYQIQKMCVPPIASADNVTSQLTCKSMP----YQRRRLNTQVLTISQFE 87
           VV+ RL+ +  + Q  K  + P+   D  T  L C   P    Y ++ L   V  IS  E
Sbjct: 154 VVENRLEDTAYVTQQVKQALLPLTKEDIDTLILGCTHYPLLESYIKKELGEDVTIISSAE 213

Query: 88  PSSQSVHSTVRPSAGVV 104
            ++  + ST+    G++
Sbjct: 214 ETAIEL-STILQHKGIL 229


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.322    0.132    0.399 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,920,492
Number of Sequences: 62578
Number of extensions: 128071
Number of successful extensions: 280
Number of sequences better than 100.0: 5
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 274
Number of HSP's gapped (non-prelim): 9
length of query: 169
length of database: 14,973,337
effective HSP length: 92
effective length of query: 77
effective length of database: 9,216,161
effective search space: 709644397
effective search space used: 709644397
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 48 (23.1 bits)