Query psy14475
Match_columns 169
No_of_seqs 110 out of 1022
Neff 7.9
Searched_HMMs 29240
Date Fri Aug 16 20:47:58 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14475.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14475hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1okc_A ADP, ATP carrier protei 99.8 7.7E-22 2.7E-26 159.1 4.9 116 6-169 4-124 (297)
2 2lck_A Mitochondrial uncouplin 99.8 6.7E-22 2.3E-26 160.1 3.4 112 7-169 102-214 (303)
3 1okc_A ADP, ATP carrier protei 99.8 1.3E-21 4.3E-26 157.8 2.6 109 9-168 112-220 (297)
4 2lck_A Mitochondrial uncouplin 99.8 1.7E-21 5.9E-26 157.6 2.8 114 11-169 3-116 (303)
5 3vjj_A P9-1; 3.00A {Rice black 31.2 32 0.0011 27.3 2.8 33 103-138 295-327 (368)
6 2acm_A Mucin-1; auto-catalytic 22.1 21 0.0007 21.5 0.2 20 101-120 40-59 (66)
7 3i71_A Ethanolamine utilizatio 15.3 92 0.0032 18.5 1.9 25 15-39 17-41 (68)
8 3tgu_G UQCRQ, mitochondrial ub 9.6 19 0.00064 23.0 -2.6 41 114-154 32-72 (81)
9 1yro_A Alpha-lactalbumin; Arg2 8.9 1.7E+02 0.0058 19.9 1.9 17 102-118 87-103 (123)
10 2a3d_A Protein (de novo three- 8.3 1.6E+02 0.0056 17.3 1.4 14 29-42 10-23 (73)
No 1
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.84 E-value=7.7e-22 Score=159.06 Aligned_cols=116 Identities=22% Similarity=0.298 Sum_probs=94.4
Q ss_pred CchhHHHHHHHhHHHHHHHHhcCcHHHHHHHHhhcccccccccccCCCcccccCccccceeccccccccccccceeeeec
Q psy14475 6 SRDSFIHLVAGGIAGTTAAIVTCPLEVVKTRLQSSVGIYQIQKMCVPPIASADNVTSQLTCKSMPYQRRRLNTQVLTISQ 85 (169)
Q Consensus 6 ~~~~~~~~laG~~ag~~~~~~~~Pld~iktr~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 85 (169)
..+.+.++++|++||+++.++++|+|+||+|||++.... +.
T Consensus 4 ~~~~~~~~~aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~-------~~-------------------------------- 44 (297)
T 1okc_A 4 ALSFLKDFLAGGVAAAISKTAVAPIERVKLLLQVQHASK-------QI-------------------------------- 44 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHHGGGCS-------SC--------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHhccccc-------cc--------------------------------
Confidence 356788999999999999999999999999999985300 00
Q ss_pred cccccccccccccCCCCHHHHHHHHHhhcCccccccccccccccccccceEEeeehHHHHHHhhhcCC-CC----chHHH
Q psy14475 86 FEPSSQSVHSTVRPSAGVVQCLRYIVNHEGPKALFRGLVPNLIGVAPSRAIYFCAYSQSKKFWNNILP-PD----TALVH 160 (169)
Q Consensus 86 ~g~~~~~~~~~~~~~~g~~~~~~~i~r~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~lk~~~~~~~~-~~----~~~~~ 160 (169)
+....|.++++++++|+++||++|||||+.++++|.+|.++++|.+||.+|+.+....+ .. +....
T Consensus 45 ---------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~~~~~~~ 115 (297)
T 1okc_A 45 ---------SAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGN 115 (297)
T ss_dssp ---------CGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHHHHHHHHHTTCCTTTCHHHHHHHH
T ss_pred ---------ccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHHHHHHHhccccCcccchHHHHHHH
Confidence 00336889999999999999999999999999999999999999999999996543322 22 23567
Q ss_pred HHhhhhccC
Q psy14475 161 VFSAACAVQ 169 (169)
Q Consensus 161 ~~~g~~aG~ 169 (169)
+++|++||+
T Consensus 116 ~~ag~~ag~ 124 (297)
T 1okc_A 116 LASGGAAGA 124 (297)
T ss_dssp HHHHHHHHH
T ss_pred HHHHHHHHH
Confidence 888888873
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.84 E-value=6.7e-22 Score=160.08 Aligned_cols=112 Identities=26% Similarity=0.257 Sum_probs=97.2
Q ss_pred chhHHHHHHHhHHHHHHHHhcCcHHHHHHHHhhcccccccccccCCCcccccCccccceeccccccccccccceeeeecc
Q psy14475 7 RDSFIHLVAGGIAGTTAAIVTCPLEVVKTRLQSSVGIYQIQKMCVPPIASADNVTSQLTCKSMPYQRRRLNTQVLTISQF 86 (169)
Q Consensus 7 ~~~~~~~laG~~ag~~~~~~~~Pld~iktr~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 86 (169)
.+.+.++++|++||+++.++++|+|+||+|||++...
T Consensus 102 ~~~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~------------------------------------------- 138 (303)
T 2lck_A 102 AGIGSRLLAGSTTGALAVAVAQPTDVVKVRFQAQARA------------------------------------------- 138 (303)
T ss_dssp CCHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHSCSC-------------------------------------------
T ss_pred CcHHHHHHHHHHHHHHHHHHcCcHHHHHHHHhccccc-------------------------------------------
Confidence 5678899999999999999999999999999997530
Q ss_pred ccccccccccccCCCCHHHHHHHHHhhcCccccccccccccccccccceEEeeehHHHHHHhhhcCC-CCchHHHHHhhh
Q psy14475 87 EPSSQSVHSTVRPSAGVVQCLRYIVNHEGPKALFRGLVPNLIGVAPSRAIYFCAYSQSKKFWNNILP-PDTALVHVFSAA 165 (169)
Q Consensus 87 g~~~~~~~~~~~~~~g~~~~~~~i~r~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~lk~~~~~~~~-~~~~~~~~~~g~ 165 (169)
.....|.++++++++|+++||++|||||+.|+++|.+|+.+++|.+||.+|+.+.+... +.+....+++|+
T Consensus 139 --------~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~l~~~~~~~~~~~~~~~~g~ 210 (303)
T 2lck_A 139 --------GGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAF 210 (303)
T ss_dssp --------CCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTTTTSCCSCHHHHHHHHH
T ss_pred --------CCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCchHHHHHHHH
Confidence 00346789999999999999999999999999999999999999999999999876532 455678888988
Q ss_pred hccC
Q psy14475 166 CAVQ 169 (169)
Q Consensus 166 ~aG~ 169 (169)
+||+
T Consensus 211 ~ag~ 214 (303)
T 2lck_A 211 GAGF 214 (303)
T ss_dssp HHHH
T ss_pred HHHH
Confidence 8873
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.82 E-value=1.3e-21 Score=157.84 Aligned_cols=109 Identities=27% Similarity=0.430 Sum_probs=93.4
Q ss_pred hHHHHHHHhHHHHHHHHhcCcHHHHHHHHhhcccccccccccCCCcccccCccccceeccccccccccccceeeeecccc
Q psy14475 9 SFIHLVAGGIAGTTAAIVTCPLEVVKTRLQSSVGIYQIQKMCVPPIASADNVTSQLTCKSMPYQRRRLNTQVLTISQFEP 88 (169)
Q Consensus 9 ~~~~~laG~~ag~~~~~~~~Pld~iktr~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~ 88 (169)
++.++++|++||+++.++++|+|+||+|||++... ..
T Consensus 112 ~~~~~~ag~~ag~~~~~~~~Pld~vktrlq~~~~~--------~~----------------------------------- 148 (297)
T 1okc_A 112 FAGNLASGGAAGATSLCFVYPLDFARTRLAADVGK--------GA----------------------------------- 148 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--------ST-----------------------------------
T ss_pred HHHHHHHHHHHHHHHHHHhCcHHHHHHHHhccccC--------CC-----------------------------------
Confidence 46789999999999999999999999999997530 00
Q ss_pred ccccccccccCCCCHHHHHHHHHhhcCccccccccccccccccccceEEeeehHHHHHHhhhcCCCCchHHHHHhhhhcc
Q psy14475 89 SSQSVHSTVRPSAGVVQCLRYIVNHEGPKALFRGLVPNLIGVAPSRAIYFCAYSQSKKFWNNILPPDTALVHVFSAACAV 168 (169)
Q Consensus 89 ~~~~~~~~~~~~~g~~~~~~~i~r~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~lk~~~~~~~~~~~~~~~~~~g~~aG 168 (169)
....|.++++++++|+++||++|||||+.|+++|.+|+++++|.+||.+|+.+.+. ...+....+++|++||
T Consensus 149 -------~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~k~~~~~~-~~~~~~~~~~~g~~ag 220 (297)
T 1okc_A 149 -------AQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTAKGMLPDP-KNVHIIVSWMIAQTVT 220 (297)
T ss_dssp -------TTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHHHHSSCGG-GCSCHHHHHHHHHHHH
T ss_pred -------cCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHHhccC-CCccHHHHHHHHHHHH
Confidence 03467899999999999999999999999999999999999999999999987654 3445677788888776
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.82 E-value=1.7e-21 Score=157.64 Aligned_cols=114 Identities=21% Similarity=0.334 Sum_probs=94.8
Q ss_pred HHHHHHhHHHHHHHHhcCcHHHHHHHHhhcccccccccccCCCcccccCccccceeccccccccccccceeeeecccccc
Q psy14475 11 IHLVAGGIAGTTAAIVTCPLEVVKTRLQSSVGIYQIQKMCVPPIASADNVTSQLTCKSMPYQRRRLNTQVLTISQFEPSS 90 (169)
Q Consensus 11 ~~~laG~~ag~~~~~~~~Pld~iktr~Q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~ 90 (169)
.++++|++||+++.++++|+|+||+|||++.... .. ..
T Consensus 3 ~~~~aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~--------~~-----------------------------~~----- 40 (303)
T 2lck_A 3 VKFLGAGTAACIADLITFPLDTAKVRLQIQGESQ--------GL-----------------------------VR----- 40 (303)
T ss_dssp CHHHHHHHHHHHHHHTTHHHHHHHHHSSCCTTCC--------SH-----------------------------HH-----
T ss_pred hhHHhHHHHHHHHHHHcCcHHHHHHHHHhhhccc--------cc-----------------------------cc-----
Confidence 4789999999999999999999999999975310 00 00
Q ss_pred ccccccccCCCCHHHHHHHHHhhcCccccccccccccccccccceEEeeehHHHHHHhhhcCCCCchHHHHHhhhhccC
Q psy14475 91 QSVHSTVRPSAGVVQCLRYIVNHEGPKALFRGLVPNLIGVAPSRAIYFCAYSQSKKFWNNILPPDTALVHVFSAACAVQ 169 (169)
Q Consensus 91 ~~~~~~~~~~~g~~~~~~~i~r~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~lk~~~~~~~~~~~~~~~~~~g~~aG~ 169 (169)
......|.++++++++|+++||++|||||+.+++++.+|+.+++|.+||.+|+.+.+..+..+....+++|++||+
T Consensus 41 ---~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k~~~~~~~~~~~~~~~~~ag~~ag~ 116 (303)
T 2lck_A 41 ---TAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTTGA 116 (303)
T ss_dssp ---HCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTTHHHHHHHHHSCCCSSCCHHHHHHHHHHHHH
T ss_pred ---cccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcCCcHHHHHHHHHHHHH
Confidence 0003368899999999999999999999999999999999999999999999998765345667888999998873
No 5
>3vjj_A P9-1; 3.00A {Rice black streaked dwarf virus}
Probab=31.17 E-value=32 Score=27.31 Aligned_cols=33 Identities=21% Similarity=0.352 Sum_probs=14.6
Q ss_pred HHHHHHHHHhhcCccccccccccccccccccceEEe
Q psy14475 103 VVQCLRYIVNHEGPKALFRGLVPNLIGVAPSRAIYF 138 (169)
Q Consensus 103 ~~~~~~~i~r~eG~~glyrG~~~~~~r~~p~~~i~f 138 (169)
....+.+.+.+||+ |+-+..+-+|..|...++|
T Consensus 295 tp~~I~e~i~K~GL---Fk~it~~~~rg~~~q~vl~ 327 (368)
T 3vjj_A 295 TPALIREKIAKEGL---FKIITSNTLRGASRQTVLF 327 (368)
T ss_dssp CCHHHHHHHHHSCS---EEECC----------CEEE
T ss_pred ChHHHHHHHHhcCc---eEEEecccccCCccceEEE
Confidence 33567777788764 6666666666666555554
No 6
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=22.13 E-value=21 Score=21.48 Aligned_cols=20 Identities=15% Similarity=0.119 Sum_probs=16.9
Q ss_pred CCHHHHHHHHHhhcCccccc
Q psy14475 101 AGVVQCLRYIVNHEGPKALF 120 (169)
Q Consensus 101 ~g~~~~~~~i~r~eG~~gly 120 (169)
+++.+.+.+||+++++.||+
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 35778899999999998876
No 7
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=15.26 E-value=92 Score=18.54 Aligned_cols=25 Identities=36% Similarity=0.453 Sum_probs=21.5
Q ss_pred HHhHHHHHHHHhcCcHHHHHHHHhh
Q psy14475 15 AGGIAGTTAAIVTCPLEVVKTRLQS 39 (169)
Q Consensus 15 aG~~ag~~~~~~~~Pld~iktr~Q~ 39 (169)
-|+++|=++.-+-.|+|..|..+..
T Consensus 17 QGMTaGEVAA~f~w~Le~ar~aLeq 41 (68)
T 3i71_A 17 QGMTAGEVAAHFGWPLEKARNALEQ 41 (68)
T ss_dssp TCBCHHHHHHHHTCCHHHHHHHHHH
T ss_pred ccccHHHHHHHhCCcHHHHHHHHHH
Confidence 4788999999999999999998753
No 8
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=9.62 E-value=19 Score=22.96 Aligned_cols=41 Identities=15% Similarity=0.224 Sum_probs=29.2
Q ss_pred cCccccccccccccccccccceEEeeehHHHHHHhhhcCCC
Q psy14475 114 EGPKALFRGLVPNLIGVAPSRAIYFCAYSQSKKFWNNILPP 154 (169)
Q Consensus 114 eG~~glyrG~~~~~~r~~p~~~i~f~~ye~lk~~~~~~~~~ 154 (169)
+|+.-.||-+...++..+|.-.+.+.+|++.++.....+..
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rK 72 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRK 72 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSC
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCC
Confidence 34444444455677788888899999999999887765433
No 9
>1yro_A Alpha-lactalbumin; Arg228Lys mutation, UDP-GAL complex, transferase activator/transferase complex; HET: GDU UDP MES PG4; 1.90A {Mus musculus} SCOP: d.2.1.2 PDB: 1nhe_A* 1nkh_A* 1nmm_A* 1nqi_A* 1nwg_A* 1o23_A* 1oqm_A* 1pzy_A* 1nf5_A* 2fyc_A* 2fyd_A*
Probab=8.89 E-value=1.7e+02 Score=19.88 Aligned_cols=17 Identities=18% Similarity=0.350 Sum_probs=14.1
Q ss_pred CHHHHHHHHHhhcCccc
Q psy14475 102 GVVQCLRYIVNHEGPKA 118 (169)
Q Consensus 102 g~~~~~~~i~r~eG~~g 118 (169)
..+.|+++|++++|+..
T Consensus 87 ~~i~CAk~I~~~~G~~a 103 (123)
T 1yro_A 87 DDIACAKKILAIKGIDY 103 (123)
T ss_dssp HHHHHHHHHHHHTCGGG
T ss_pred HHHHHHHHHHHhcCcch
Confidence 46899999999999753
No 10
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=8.33 E-value=1.6e+02 Score=17.30 Aligned_cols=14 Identities=50% Similarity=0.612 Sum_probs=10.5
Q ss_pred cHHHHHHHHhhccc
Q psy14475 29 PLEVVKTRLQSSVG 42 (169)
Q Consensus 29 Pld~iktr~Q~~~~ 42 (169)
-+..||+|+|.-..
T Consensus 10 rlaaiktrlqalgg 23 (73)
T 2a3d_A 10 RLAAIKTRLQALGG 23 (73)
T ss_dssp HHHHHHHHHHHCSS
T ss_pred HHHHHHHHHHHhcC
Confidence 45679999998653
Done!