RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14475
(169 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 84.6 bits (210), Expect = 4e-22
Identities = 44/143 (30%), Positives = 56/143 (39%), Gaps = 52/143 (36%)
Query: 10 FIHLVAGGIAGTTAAIVTCPLEVVKTRLQSSVGIYQIQKMCVPPIASADNVTSQLTCKSM 69
L+AGGIAG AA VT PL+VVKTRLQSS + K +
Sbjct: 6 LASLLAGGIAGAIAATVTYPLDVVKTRLQSSAAGGSRK------------------YKGI 47
Query: 70 PYQRRRLNTQVLTISQFEPSSQSVHSTVRPSAGVVQCLRYIVNHEGPKALFRGLVPNLIG 129
+ C + I EG + L++GL+PNL+
Sbjct: 48 ----------------------------------LDCFKKIYKEEGIRGLYKGLLPNLLR 73
Query: 130 VAPSRAIYFCAYSQSKKFWNNIL 152
VAP+ AIYF Y KK L
Sbjct: 74 VAPAAAIYFGTYETLKKLLLKKL 96
>gnl|CDD|185494 PTZ00168, PTZ00168, mitochondrial carrier protein; Provisional.
Length = 259
Score = 38.8 bits (90), Expect = 6e-04
Identities = 13/32 (40%), Positives = 20/32 (62%)
Query: 116 PKALFRGLVPNLIGVAPSRAIYFCAYSQSKKF 147
K L+ G++P L+G P+ A ++C Y SKK
Sbjct: 42 IKKLYSGILPTLVGTVPASAFFYCFYELSKKL 73
Score = 30.7 bits (69), Expect = 0.34
Identities = 18/50 (36%), Positives = 27/50 (54%), Gaps = 6/50 (12%)
Query: 5 NSRDSFIHLVAGGIAGTTAAIVTCPLEVVKTRLQ----SSV--GIYQIQK 48
N + ++L++ IA TA IV P E+VK +Q SV IY+I +
Sbjct: 80 NISKTNLYLISTSIAEITACIVRLPFEIVKQNMQVSGNISVLKTIYEITQ 129
Score = 29.9 bits (67), Expect = 0.53
Identities = 13/44 (29%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
Query: 8 DSFIHLVAGGIAGTTAAIVTCPLEVVKTRLQS--SVGIYQIQKM 49
+ F +LV G ++G V P++ +KT +Q+ S I+K+
Sbjct: 2 EHFHNLVTGALSGVIVDAVLYPIDSIKTNIQAKKSFSFSDIKKL 45
Score = 29.5 bits (66), Expect = 0.73
Identities = 10/23 (43%), Positives = 17/23 (73%)
Query: 14 VAGGIAGTTAAIVTCPLEVVKTR 36
+ GG+AG A +T P++V+K+R
Sbjct: 184 ICGGLAGGIAGFLTTPVDVIKSR 206
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 33.2 bits (76), Expect = 0.044
Identities = 17/58 (29%), Positives = 27/58 (46%), Gaps = 10/58 (17%)
Query: 101 AGVVQCLRYIVNHEGPKALFRGLVPNLIGVAPSRAIYFC----------AYSQSKKFW 148
+G+V C R + +G +L+RG N+I P++A F Y+Q FW
Sbjct: 53 SGIVNCFRRVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTDFW 110
Score = 31.3 bits (71), Expect = 0.19
Identities = 11/32 (34%), Positives = 24/32 (75%)
Query: 11 IHLVAGGIAGTTAAIVTCPLEVVKTRLQSSVG 42
+++++GG+AG ++ ++ PL+ +TRL S +G
Sbjct: 115 VNILSGGLAGASSLLIVYPLDFARTRLASDIG 146
Score = 28.6 bits (64), Expect = 1.5
Identities = 8/28 (28%), Positives = 15/28 (53%)
Query: 101 AGVVQCLRYIVNHEGPKALFRGLVPNLI 128
G + C + I+ +EG F+G N++
Sbjct: 253 TGTLDCWKKILKNEGLGGFFKGAWANVL 280
Score = 28.6 bits (64), Expect = 1.6
Identities = 14/50 (28%), Positives = 23/50 (46%), Gaps = 1/50 (2%)
Query: 102 GVVQCLRYIVNHEGPKALFRGLVPNLIGVAPSRAIYFCAYSQSKK-FWNN 150
G+ CL I G +L++G ++ G+ R YF Y +K + N
Sbjct: 155 GLFDCLMKISKQTGFLSLYQGFGVSVQGIIVYRGAYFGLYDSAKALLFGN 204
>gnl|CDD|227313 COG4980, GvpP, Gas vesicle protein [General function prediction
only].
Length = 115
Score = 28.5 bits (64), Expect = 0.92
Identities = 9/32 (28%), Positives = 15/32 (46%)
Query: 5 NSRDSFIHLVAGGIAGTTAAIVTCPLEVVKTR 36
+D ++ GGI G AA++ P + R
Sbjct: 3 KGKDFLFGILIGGIIGAAAALLFAPKSGKELR 34
>gnl|CDD|234376 TIGR03863, PQQ_ABC_bind, ABC transporter, substrate binding
protein, PQQ-dependent alcohol dehydrogenase system.
Members of this protein family are putative
substrate-binding proteins of an ABC transporter family
that associates, in gene neighborhood and phylogenomic
profile, with pyrroloquinoline-quinone (PQQ)-dependent
degradation of certain alcohols, such as 2-phenylethanol
in Pseudomonas putida U [Transport and binding proteins,
Carbohydrates, organic alcohols, and acids].
Length = 347
Score = 28.0 bits (63), Expect = 2.3
Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 8/49 (16%)
Query: 125 PNLIGVAPSRAIYFCAYSQ--SKKFWNNIL------PPDTALVHVFSAA 165
NL+ PSRA+ A +Q + K W IL P D +
Sbjct: 103 ANLLHTLPSRAMLADALAQYLAAKRWRRILLIQGPLPEDALFADALRRS 151
>gnl|CDD|223481 COG0404, GcvT, Glycine cleavage system T protein
(aminomethyltransferase) [Amino acid transport and
metabolism].
Length = 379
Score = 27.6 bits (62), Expect = 3.5
Identities = 17/64 (26%), Positives = 25/64 (39%), Gaps = 14/64 (21%)
Query: 85 QFEPSSQSVHSTVRPSAGVVQCLRYIVNH------EGPKA--LFRGLVPNLIG-VAPSRA 135
+ S H VR +AG+ V+H GP A + L+ N + + P RA
Sbjct: 32 WYAKSVMEEHLAVREAAGLFD-----VSHMGKVEVSGPDAAAFLQRLLTNDVSKLKPGRA 86
Query: 136 IYFC 139
Y
Sbjct: 87 RYTL 90
>gnl|CDD|235756 PRK06259, PRK06259, succinate dehydrogenase/fumarate reductase
iron-sulfur subunit; Provisional.
Length = 486
Score = 27.7 bits (62), Expect = 3.5
Identities = 11/51 (21%), Positives = 18/51 (35%), Gaps = 5/51 (9%)
Query: 76 LNTQVLTISQFEPSSQSVHST-----VRPSAGVVQCLRYIVNHEGPKALFR 121
+ +T+ +F+P H V+ V+ L YI FR
Sbjct: 1 MKMITITVKRFDPEKDEPHFESYEVPVKEGMTVLDALEYINKTYDANIAFR 51
>gnl|CDD|227294 COG4959, TraF, Type IV secretory pathway, protease TraF
[Posttranslational modification, protein turnover,
chaperones / Intracellular trafficking and secretion].
Length = 173
Score = 27.1 bits (60), Expect = 3.8
Identities = 13/53 (24%), Positives = 23/53 (43%), Gaps = 1/53 (1%)
Query: 1 MASVNSRDSFIHLVAGGIAGTTAAIVTC-PLEVVKTRLQSSVGIYQIQKMCVP 52
+ + +R L A G AA+V P V + +G+Y++ K+ P
Sbjct: 1 LRRMRARIVAALLAAIGFGLAGAAVVMPLPGLRVNASASAPLGLYRVSKLSAP 53
>gnl|CDD|218088 pfam04437, RINT1_TIP1, RINT-1 / TIP-1 family. This family includes
RINT-1, a Rad50 interacting protein which participates
in radiation induced checkpoint control, as well as the
TIP-1 protein from yeast that seems to be involved in a
complex with Sec20p that is required for golgi
transport.
Length = 483
Score = 27.3 bits (61), Expect = 4.7
Identities = 24/114 (21%), Positives = 38/114 (33%), Gaps = 21/114 (18%)
Query: 57 ADNVTSQLTCKSMPYQRRRLNTQVLTISQF-EPSSQSVHSTVRPSAGVVQCLRYIVNHEG 115
+ Y + IS + SS S ++ PSA +V+ LRY+
Sbjct: 310 VHRLVKGFKAALRNYFK---------ISTWSSLSSTSALESLSPSAELVEALRYLRRR-- 358
Query: 116 PKALFRGLVPNLIGVAPSRAIYFCAYSQSKKFWNNILPPDTALVHVFSAACAVQ 169
L R L + R S ++IL +++ FS A Q
Sbjct: 359 ISKLERLLPLAIF----LRIWRQLLLSLDTYIISSIL-----MLNKFSEGGAAQ 403
>gnl|CDD|223953 COG1022, FAA1, Long-chain acyl-CoA synthetases (AMP-forming) [Lipid
metabolism].
Length = 613
Score = 26.9 bits (60), Expect = 7.0
Identities = 7/27 (25%), Positives = 12/27 (44%), Gaps = 1/27 (3%)
Query: 96 TVRPSAGVVQCLRYIVNHEGPKALFRG 122
+ ++ Q L YI+N K +F
Sbjct: 99 PIYSTSTPEQ-LAYILNESESKVIFVE 124
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.322 0.132 0.394
Gapped
Lambda K H
0.267 0.0710 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 7,992,132
Number of extensions: 676679
Number of successful extensions: 554
Number of sequences better than 10.0: 1
Number of HSP's gapped: 554
Number of HSP's successfully gapped: 19
Length of query: 169
Length of database: 10,937,602
Length adjustment: 90
Effective length of query: 79
Effective length of database: 6,945,742
Effective search space: 548713618
Effective search space used: 548713618
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 55 (25.0 bits)