RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14475
(169 letters)
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
transporter, nucleotide translocation, membrane protein,
transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
f.42.1.1 PDB: 2c3e_A*
Length = 297
Score = 77.7 bits (192), Expect = 6e-18
Identities = 25/145 (17%), Positives = 45/145 (31%), Gaps = 48/145 (33%)
Query: 12 HLVAGGIAGTTAAIVTCPLEVVKTRLQSSVGIYQIQKMCVPPIASADNVTSQLTCKSMPY 71
+AGG+A + P+E VK LQ QI
Sbjct: 10 DFLAGGVAAAISKTAVAPIERVKLLLQVQHASKQI------------------------- 44
Query: 72 QRRRLNTQVLTISQFEPSSQSVHSTVRPSAGVVQCLRYIVNHEGPKALFRGLVPNLIGVA 131
S + G++ C+ I +G + +RG + N+I
Sbjct: 45 -----------------------SAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYF 81
Query: 132 PSRAIYFCAYSQSKKFWNNILPPDT 156
P++A+ F + K+ + +
Sbjct: 82 PTQALNFAFKDKYKQIFLGGVDRHK 106
Score = 76.5 bits (189), Expect = 2e-17
Identities = 26/142 (18%), Positives = 45/142 (31%), Gaps = 50/142 (35%)
Query: 7 RDSFIHLVAGGIAGTTAAIVTCPLEVVKTRLQSSVGIYQIQKMCVPPIASADNVTSQLTC 66
R +L +GG AG T+ PL+ +TR
Sbjct: 110 RYFAGNLASGGAAGATSLCFVYPLDFARTR------------------------------ 139
Query: 67 KSMPYQRRRLNTQVLTISQFEPSSQSVHSTVRPSAGVVQCLRYIVNHEGPKALFRGLVPN 126
L + ++Q + G+ C+ I +G + L++G +
Sbjct: 140 --------------LAADVGKGAAQREFT------GLGNCITKIFKSDGLRGLYQGFNVS 179
Query: 127 LIGVAPSRAIYFCAYSQSKKFW 148
+ G+ RA YF Y +K
Sbjct: 180 VQGIIIYRAAYFGVYDTAKGML 201
Score = 69.2 bits (170), Expect = 9e-15
Identities = 25/138 (18%), Positives = 38/138 (27%), Gaps = 51/138 (36%)
Query: 10 FIHLVAGGIAGTTAAIVTCPLEVVKTRLQSSVGIYQIQKMCVPPIASADNVTSQLTCKSM 69
+ + A +V+ P + V+ R+ + S +
Sbjct: 210 IVSWMIAQTVTAVAGLVSYPFDTVRRRMM---------------------MQSGRKGADI 248
Query: 70 PYQRRRLNTQVLTISQFEPSSQSVHSTVRPSAGVVQCLRYIVNHEGPKALFRGLVPNLIG 129
Y G V C R I EGPKA F+G N++
Sbjct: 249 MYT-----------------------------GTVDCWRKIAKDEGPKAFFKGAWSNVLR 279
Query: 130 VAPSRAIYFCAYSQSKKF 147
A Y + KKF
Sbjct: 280 GMGG-AFVLVLYDEIKKF 296
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
translocator, mitochondrial carrier transport protein,
structural genomics; NMR {Mus musculus}
Length = 303
Score = 76.2 bits (188), Expect = 2e-17
Identities = 26/157 (16%), Positives = 45/157 (28%), Gaps = 45/157 (28%)
Query: 11 IHLVAGGIAGTTAAIVTCPLEVVKTRLQSSVGIYQIQKMCVPPIASADNVTSQLTCKSMP 70
+ + G A A ++T PL+ K RLQ
Sbjct: 3 VKFLGAGTAACIADLITFPLDTAKVRLQI------------------------------- 31
Query: 71 YQRRRLNTQVLTISQFEPSSQSVHSTVRPSAGVVQCLRYIVNHEGPKALFRGLVPNLIGV 130
Q E + GV+ + +V EGP++L+ GLV L
Sbjct: 32 --------------QGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQ 77
Query: 131 APSRAIYFCAYSQSKKFWNNILPPDTALVHVFSAACA 167
++ Y K+F+ + + +
Sbjct: 78 MSFASVRIGLYDSVKQFYTKGSEHAGIGSRLLAGSTT 114
Score = 69.3 bits (170), Expect = 8e-15
Identities = 31/156 (19%), Positives = 40/156 (25%), Gaps = 52/156 (33%)
Query: 13 LVAGGIAGTTAAIVTCPLEVVKTRLQSSVGIYQIQKMCVPPIASADNVTSQLTCKSMPYQ 72
L+AG G A V P +VVK R Q+
Sbjct: 108 LLAGSTTGALAVAVAQPTDVVKVRFQAQA--------------------------RAGGG 141
Query: 73 RRRLNTQVLTISQFEPSSQSVHSTVRPSAGVVQCLRYIVNHEGPKALFRGLVPNLIGVAP 132
RR V+ + I EG + L++G PN+ A
Sbjct: 142 RR-------------------------YQSTVEAYKTIAREEGIRGLWKGTSPNVARNAI 176
Query: 133 SRAIYFCAYSQSKKFW-NNILPPDTALVHVFSAACA 167
Y K L D H SA A
Sbjct: 177 VNCAELVTYDLIKDTLLKANLMTDDLPCHFTSAFGA 212
Score = 59.6 bits (145), Expect = 2e-11
Identities = 22/150 (14%), Positives = 39/150 (26%), Gaps = 56/150 (37%)
Query: 12 HLVAGGIAGTTAAIVTCPLEVVKTRLQSSVGIYQIQKMCVPPIASADNVTSQLTCKSMPY 71
H + AG ++ P++VVKTR Y
Sbjct: 205 HFTSAFGAGFCTTVIASPVDVVKTR---------YMNS-----------------ALGQY 238
Query: 72 QRRRLNTQVLTISQFEPSSQSVHSTVRPSAGVVQCLRYIVNHEGPKALFRGLVPNLIGVA 131
C ++ EGP+A ++G +P+ + +
Sbjct: 239 H-----------------------------SAGHCALTMLRKEGPRAFYKGFMPSFLRLG 269
Query: 132 PSRAIYFCAYSQSKKFW-NNILPPDTALVH 160
+ F Y Q K+ + H
Sbjct: 270 SWNVVMFVTYEQLKRALMAAYQSREAPFHH 299
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 47.0 bits (111), Expect = 8e-07
Identities = 34/184 (18%), Positives = 66/184 (35%), Gaps = 37/184 (20%)
Query: 3 SVNSRDSFIHLVAGGIAGTTAAIVTCPLEVVKTRLQSSVGIYQIQKMCVPP-IASADNVT 61
+V ++ + + GG G T E L+ +YQ + V I +
Sbjct: 148 AVGEGNAQLVAIFGG-QGNTDDYFE---E-----LRD---LYQTYHVLVGDLIKFSAETL 195
Query: 62 SQLTCKSMPYQRRRLNTQVLTISQF--EPSSQS-----VHSTVR-PSAGVVQCLRYIV-- 111
S+L ++ TQ L I ++ PS+ + + P GV+Q Y+V
Sbjct: 196 SELI--RTTLDAEKVFTQGLNILEWLENPSNTPDKDYLLSIPISCPLIGVIQLAHYVVTA 253
Query: 112 -----NHEGPKALFRGLVPNLIGVAPSRAIYFCAYSQS-KKFWNNILPPDTALVHVFSAA 165
++ +G + G+ + AI A + S + F+ ++ A+ +F
Sbjct: 254 KLLGFTPGELRSYLKGATGHSQGLVTAVAI---AETDSWESFFVSV---RKAITVLFFIG 307
Query: 166 CAVQ 169
Sbjct: 308 VRCY 311
Score = 45.4 bits (107), Expect = 3e-06
Identities = 35/172 (20%), Positives = 62/172 (36%), Gaps = 51/172 (29%)
Query: 1 MASVNSRDSFIHLVAG--------GIAGTTAA-IVTCPLEVVKTRLQSSVGIYQIQKMCV 51
+A +S +SF V G+ A + P +++ L+++ G V
Sbjct: 283 IAETDSWESFFVSVRKAITVLFFIGVRCYEAYPNTSLPPSILEDSLENNEG--------V 334
Query: 52 PPIASADNVTSQLTCKSMPYQRRRLNTQVLTISQFEPSSQSVHSTVR--PSAGVVQCLRY 109
P + L+ ++ + ++ V + P+ + V ++ VV
Sbjct: 335 P--------SPMLSISNLT--QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLVVS---- 380
Query: 110 IVNHEG-PKALFRGLVPNLIGV-AP-----SRAIYFCAYSQSK-KFWNNILP 153
G P++L GL L AP SR +S+ K KF N LP
Sbjct: 381 -----GPPQSL-YGLNLTLRKAKAPSGLDQSRIP----FSERKLKFSNRFLP 422
Score = 35.8 bits (82), Expect = 0.005
Identities = 16/94 (17%), Positives = 30/94 (31%), Gaps = 37/94 (39%)
Query: 4 VNSRDSFIHLVAGGIAGTTAAIVTCPLEVVKTRLQSSVGIYQIQKMCVPPIASADNVTSQ 63
VN + + ++G + L + L +K P D Q
Sbjct: 371 VNGAKNLV------VSGPPQS-----LYGLNLTL---------RKAKAPS--GLD----Q 404
Query: 64 LTCKSMPYQRRRLN--TQVLTISQFEPSSQSVHS 95
+ +P+ R+L + L ++ P HS
Sbjct: 405 --SR-IPFSERKLKFSNRFLPVA--SP----FHS 429
Score = 29.2 bits (65), Expect = 0.68
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 8/40 (20%)
Query: 18 IAGTTAAI--VTCPLEVVKTR------LQSSVGIYQIQKM 49
AG A+ VT L +K + LQ S+ + +++
Sbjct: 1855 AAGDLRALDTVTNVLNFIKLQKIDIIELQKSLSLEEVEGH 1894
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna;
HET: CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 29.9 bits (66), Expect = 0.24
Identities = 9/32 (28%), Positives = 14/32 (43%), Gaps = 11/32 (34%)
Query: 33 VKTRLQSSVGIYQIQKMCVP---PIASADNVT 61
+K +LQ+S+ +Y P A A T
Sbjct: 22 LK-KLQASLKLYA------DDSAP-ALAIKAT 45
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 30.2 bits (67), Expect = 0.37
Identities = 20/111 (18%), Positives = 32/111 (28%), Gaps = 38/111 (34%)
Query: 46 IQKMCVPPIASAD--NVTSQLT------CKSMPYQRRRLNTQVLTISQF--EPSSQSVHS 95
I+ AS N QL C + P R +N I F + + S
Sbjct: 507 IRHDSTAWNASGSILNTLQQLKFYKPYICDNDPKYERLVNA----ILDFLPKIEENLICS 562
Query: 96 TVRPSAGVVQCLRYIVNHEGPKALFRGLVPNLIGVAPSRAIYFCAYSQSKK 146
+++ AL A AI+ A+ Q ++
Sbjct: 563 ---KYTDLLR-----------IALM----------AEDEAIFEEAHKQVQR 589
>4a1g_A Mitotic checkpoint serine/threonine-protein kinas; cell cycle,
transferase, spindle assembly checkpoint, mitosi repeat,
KNL1, KMN network; 2.60A {Homo sapiens} PDB: 2lah_A
Length = 152
Score = 27.1 bits (60), Expect = 2.4
Identities = 7/38 (18%), Positives = 15/38 (39%), Gaps = 2/38 (5%)
Query: 106 CLRYIVNHEGPKALFRGLVPNLIGVAPSRAIYFCAYSQ 143
CL++ + F L + IG + + A++
Sbjct: 74 CLKFAEYNSDLHQFFEFLYNHGIGT--LSSPLYIAWAG 109
>1ass_A Thermosome; chaperonin, HSP60, TCP1, groel, thermoplasma ACI
ATP-binding; 2.30A {Thermoplasma acidophilum} SCOP:
c.8.5.2 PDB: 1asx_A
Length = 159
Score = 26.0 bits (58), Expect = 5.0
Identities = 8/26 (30%), Positives = 15/26 (57%)
Query: 24 AIVTCPLEVVKTRLQSSVGIYQIQKM 49
A++ LE+ KT +++ V I K+
Sbjct: 25 ALIDSALEIKKTEIEAKVQISDPSKI 50
>1gml_A T-complex protein 1 subunit gamma; chaperone, chaperonin, actin,
tubulin; 2.2A {Mus musculus} SCOP: c.8.5.2 PDB: 1gn1_A
Length = 178
Score = 25.6 bits (57), Expect = 6.4
Identities = 5/20 (25%), Positives = 9/20 (45%)
Query: 24 AIVTCPLEVVKTRLQSSVGI 43
++ LE K Q+ + I
Sbjct: 31 VLLDSSLEYKKGESQTDIEI 50
>3iyg_Q T-complex protein 1 subunit theta; TRIC/CCT, asymmetric, cryo-EM,
subunit arrangement, acetylation, ATP-binding,
chaperone, cytoplasm, isopeptide bond; 4.00A {Bos
taurus}
Length = 512
Score = 25.9 bits (58), Expect = 8.8
Identities = 6/26 (23%), Positives = 15/26 (57%)
Query: 24 AIVTCPLEVVKTRLQSSVGIYQIQKM 49
A+ +CP + + T + +V I +++
Sbjct: 224 AVYSCPFDGMITETKGTVLIKSAEEL 249
>3p9d_A T-complex protein 1 subunit alpha; HSP60, eukaryotic chaperonin,
actin/tubulin binding, hexadec chaperone; HET: ADP;
3.80A {Saccharomyces cerevisiae} PDB: 3p9e_a*
Length = 559
Score = 25.6 bits (57), Expect = 9.5
Identities = 3/26 (11%), Positives = 11/26 (42%)
Query: 24 AIVTCPLEVVKTRLQSSVGIYQIQKM 49
A + L+ + + + I +++
Sbjct: 245 ACLDLNLQKARMAMGVQINIDDPEQL 270
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.132 0.394
Gapped
Lambda K H
0.267 0.0612 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,361,548
Number of extensions: 120197
Number of successful extensions: 320
Number of sequences better than 10.0: 1
Number of HSP's gapped: 320
Number of HSP's successfully gapped: 28
Length of query: 169
Length of database: 6,701,793
Length adjustment: 87
Effective length of query: 82
Effective length of database: 4,272,666
Effective search space: 350358612
Effective search space used: 350358612
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.8 bits)