BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14476
(303 letters)
Database: nr
23,463,169 sequences; 8,064,228,071 total letters
Searching..................................................done
>gi|340719920|ref|XP_003398392.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
terrestris]
Length = 609
Score = 391 bits (1004), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/311 (70%), Positives = 242/311 (77%), Gaps = 16/311 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS+PEEATKAVTEMNGRII +KPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 307 MMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQR 366
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+ANMRMQQMGQ+FQPG G YFVPT+PQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 367 LANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQT 426
Query: 120 -AQGFPNIPQ-FRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA---PGPA-S 173
+ GF + FR+APRA T Q + +SARPITGQ T+ GG MQ+ GPA
Sbjct: 427 GSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARPITGQQTV---GGANMQSRSMAGPAVG 483
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQE 233
VSA R + +RNP PQA I QAVH+QGQEPLT++MLAAA PQE
Sbjct: 484 VSAQSRPSNYKYTSNMRNP---PQAM--AIPTPTPVQQAVHIQGQEPLTASMLAAAPPQE 538
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQMLGERLFPLIQ MYP+L GKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAVLQAH
Sbjct: 539 QKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAH 598
Query: 294 QAKQA-AVKKE 303
QAKQA A KKE
Sbjct: 599 QAKQAVASKKE 609
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+ +DG+S+GFGFV F P+ A +AV E+NG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 204 IKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQ 263
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 25/41 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVAL 42
E G SKG+GFV F + E A K++ +NG ++ K L+ +
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKLFTNV 173
>gi|340719918|ref|XP_003398391.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
terrestris]
Length = 630
Score = 390 bits (1003), Expect = e-106, Method: Compositional matrix adjust.
Identities = 218/311 (70%), Positives = 242/311 (77%), Gaps = 16/311 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS+PEEATKAVTEMNGRII +KPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 328 MMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+ANMRMQQMGQ+FQPG G YFVPT+PQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 388 LANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQT 447
Query: 120 -AQGFPNIPQ-FRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA---PGPA-S 173
+ GF + FR+APRA T Q + +SARPITGQ T+ GG MQ+ GPA
Sbjct: 448 GSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARPITGQQTV---GGANMQSRSMAGPAVG 504
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQE 233
VSA R + +RNP PQA I QAVH+QGQEPLT++MLAAA PQE
Sbjct: 505 VSAQSRPSNYKYTSNMRNP---PQAM--AIPTPTPVQQAVHIQGQEPLTASMLAAAPPQE 559
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQMLGERLFPLIQ MYP+L GKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAVLQAH
Sbjct: 560 QKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAH 619
Query: 294 QAKQA-AVKKE 303
QAKQA A KKE
Sbjct: 620 QAKQAVASKKE 630
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+ +DG+S+GFGFV F P+ A +AV E+NG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 IKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQ 284
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ +NG ++ K +YV +++R+ L + +
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 TNVYVKNFGE 201
>gi|350408508|ref|XP_003488428.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
impatiens]
Length = 601
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/312 (70%), Positives = 243/312 (77%), Gaps = 18/312 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS+PEEATKAVTEMNGRII +KPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 299 MMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQR 358
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+ANMRMQQMGQ+FQPG G YFVPT+PQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 359 LANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQT 418
Query: 120 -AQGFPNIPQ-FRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ---APGPA-S 173
+ GF + FR+APRA T Q + +SARPITGQ T+ GG MQ GPA
Sbjct: 419 GSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARPITGQQTV---GGANMQNRSMAGPAVG 475
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGV-QAVHVQGQEPLTSTMLAAAQPQ 232
V+A R + +RNP PQA PA V QAVH+QGQEPLT++MLAAA PQ
Sbjct: 476 VTAQSRPSNYKYTSNMRNP---PQAM---AIPAPTPVQQAVHIQGQEPLTASMLAAAPPQ 529
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
EQKQMLGERLFPLIQ MYP+L GKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAVLQA
Sbjct: 530 EQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQA 589
Query: 293 HQAKQA-AVKKE 303
HQAKQA A KKE
Sbjct: 590 HQAKQAVASKKE 601
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+ +DG+S+GFGFV F P+ A +AV E+NG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 196 IKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQ 255
>gi|350408504|ref|XP_003488426.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Bombus
impatiens]
Length = 630
Score = 389 bits (1000), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/312 (70%), Positives = 243/312 (77%), Gaps = 18/312 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS+PEEATKAVTEMNGRII +KPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 328 MMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+ANMRMQQMGQ+FQPG G YFVPT+PQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 388 LANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQT 447
Query: 120 -AQGFPNIPQ-FRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ---APGPA-S 173
+ GF + FR+APRA T Q + +SARPITGQ T+ GG MQ GPA
Sbjct: 448 GSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARPITGQQTV---GGANMQNRSMAGPAVG 504
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGV-QAVHVQGQEPLTSTMLAAAQPQ 232
V+A R + +RNP PQA PA V QAVH+QGQEPLT++MLAAA PQ
Sbjct: 505 VTAQSRPSNYKYTSNMRNP---PQAM---AIPAPTPVQQAVHIQGQEPLTASMLAAAPPQ 558
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
EQKQMLGERLFPLIQ MYP+L GKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAVLQA
Sbjct: 559 EQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQA 618
Query: 293 HQAKQA-AVKKE 303
HQAKQA A KKE
Sbjct: 619 HQAKQAVASKKE 630
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+ +DG+S+GFGFV F P+ A +AV E+NG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 IKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQ 284
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ +NG ++ K +YV +++R+ L + +
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 TNVYVKNFGE 201
>gi|380019828|ref|XP_003693803.1| PREDICTED: polyadenylate-binding protein 1-like [Apis florea]
Length = 630
Score = 389 bits (999), Expect = e-106, Method: Compositional matrix adjust.
Identities = 219/312 (70%), Positives = 241/312 (77%), Gaps = 18/312 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS+PEEATKAVTEMNGRII +KPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 328 MMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+ANMRMQQMGQ+FQPG G YFVPT+PQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 388 LANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQT 447
Query: 120 -AQGFPNIPQ-FRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ---APGPA-S 173
+ GF + FR+APRA T Q +SARPITGQ + GG MQ GPA
Sbjct: 448 GSSGFATMQGPFRAAPRAPTAQAGTMRNTLSARPITGQQAV---GGANMQNRSMAGPAVG 504
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGV-QAVHVQGQEPLTSTMLAAAQPQ 232
VSA R + +RNP PQA PA V QAVH+QGQEPLT++MLAAA PQ
Sbjct: 505 VSAQSRPSNYKYTSNMRNP---PQAM---AIPAPTPVQQAVHIQGQEPLTASMLAAAPPQ 558
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
EQKQMLGERLFPLIQ MYP+L GKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAVLQA
Sbjct: 559 EQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQA 618
Query: 293 HQAKQA-AVKKE 303
HQAKQA A KKE
Sbjct: 619 HQAKQAVASKKE 630
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+ +DG+S+GFGFV F P+ A +AV E+NG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 IKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQ 284
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ +NG ++ K +YV +++R+ L + +
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 TNVYVKNFGE 201
>gi|328782034|ref|XP_396057.4| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Apis
mellifera]
Length = 601
Score = 389 bits (998), Expect = e-105, Method: Compositional matrix adjust.
Identities = 219/312 (70%), Positives = 241/312 (77%), Gaps = 18/312 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS+PEEATKAVTEMNGRII +KPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 299 MMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQR 358
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+ANMRMQQMGQ+FQPG G YFVPT+PQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 359 LANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQT 418
Query: 120 -AQGFPNIPQ-FRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ---APGPA-S 173
+ GF + FR+APRA T Q +SARPITGQ + GG MQ GPA
Sbjct: 419 GSSGFATMQGPFRAAPRAPTAQAGTMRNTLSARPITGQQAV---GGANMQNRSMAGPAVG 475
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGV-QAVHVQGQEPLTSTMLAAAQPQ 232
VSA R + +RNP PQA PA V QAVH+QGQEPLT++MLAAA PQ
Sbjct: 476 VSAQSRPSNYKYTSNMRNP---PQAM---AIPAPTPVQQAVHIQGQEPLTASMLAAAPPQ 529
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
EQKQMLGERLFPLIQ MYP+L GKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAVLQA
Sbjct: 530 EQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQA 589
Query: 293 HQAKQA-AVKKE 303
HQAKQA A KKE
Sbjct: 590 HQAKQAVASKKE 601
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+ +DG+S+GFGFV F P+ A +AV E+NG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 196 IKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQ 255
>gi|383862667|ref|XP_003706805.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Megachile rotundata]
Length = 630
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/312 (69%), Positives = 240/312 (76%), Gaps = 18/312 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFS+PEEATKAVTEMNGRII +KPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 328 MMEDGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+ANMRMQQMGQ+F PG G YFVPT+PQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 388 LANMRMQQMGQMFPPGGAGNYFVPTIPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQT 447
Query: 120 AQ-GFPNIPQ-FRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA---PGPA-S 173
GF + FR+ PRA T Q + +SARPITGQ + GG MQ+ GPA
Sbjct: 448 GNSGFATMQGPFRTTPRAPTAQAGTMRSTLSARPITGQQAV---GGANMQSRSMAGPAVG 504
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGV-QAVHVQGQEPLTSTMLAAAQPQ 232
VSA R + +RNP PQA PA V QAVH+QGQEPLT++MLAAA PQ
Sbjct: 505 VSAQSRPSNYKYTSNMRNP---PQAM---AIPAPTPVQQAVHIQGQEPLTASMLAAAPPQ 558
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
EQKQMLGERLFPLIQ MYP+L GKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAVLQA
Sbjct: 559 EQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQA 618
Query: 293 HQAKQA-AVKKE 303
HQAKQA A KKE
Sbjct: 619 HQAKQAVASKKE 630
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+ +DG+S+GFGFV F P+ A +AV E+NG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 IKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQ 284
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ ++NG ++ K +YV +++R+ L + +
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 TNVYVKNFGE 201
>gi|383862671|ref|XP_003706807.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3
[Megachile rotundata]
Length = 601
Score = 388 bits (997), Expect = e-105, Method: Compositional matrix adjust.
Identities = 218/312 (69%), Positives = 240/312 (76%), Gaps = 18/312 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFS+PEEATKAVTEMNGRII +KPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 299 MMEDGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQR 358
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+ANMRMQQMGQ+F PG G YFVPT+PQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 359 LANMRMQQMGQMFPPGGAGNYFVPTIPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQT 418
Query: 120 AQ-GFPNIPQ-FRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA---PGPA-S 173
GF + FR+ PRA T Q + +SARPITGQ + GG MQ+ GPA
Sbjct: 419 GNSGFATMQGPFRTTPRAPTAQAGTMRSTLSARPITGQQAV---GGANMQSRSMAGPAVG 475
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGV-QAVHVQGQEPLTSTMLAAAQPQ 232
VSA R + +RNP PQA PA V QAVH+QGQEPLT++MLAAA PQ
Sbjct: 476 VSAQSRPSNYKYTSNMRNP---PQAM---AIPAPTPVQQAVHIQGQEPLTASMLAAAPPQ 529
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
EQKQMLGERLFPLIQ MYP+L GKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAVLQA
Sbjct: 530 EQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQA 589
Query: 293 HQAKQA-AVKKE 303
HQAKQA A KKE
Sbjct: 590 HQAKQAVASKKE 601
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+ +DG+S+GFGFV F P+ A +AV E+NG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 196 IKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQ 255
>gi|389608229|dbj|BAM17726.1| polyA-binding protein [Papilio xuthus]
Length = 619
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/306 (67%), Positives = 235/306 (76%), Gaps = 25/306 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKEDRKAHL SQYMQR
Sbjct: 328 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT- 119
+A+MRMQQMGQ+FQPG TGGYFVPT+P QRFYGP QMTQIRP PRW A P +RP+ Q+
Sbjct: 388 MASMRMQQMGQIFQPGGTGGYFVPTIPPAQRFYGPAQMTQIRPSPRWTAQPAVRPNAQSA 447
Query: 120 AQGFPNI-PQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAG 178
A +PN+ P FR APR Q +R ++M ARPITGQ G ++AP V +G
Sbjct: 448 ASAYPNMQPPFRPAPRGP-AQAALR-SSMGARPITGQQ--GVATASSIRAP---IVPQSG 500
Query: 179 RQTGGYNKYPVRN-PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQM 237
R G +RN P QP AVH+QGQEPLT+TMLAAA QEQKQM
Sbjct: 501 RPAGYKYTSNMRNPPAPQP---------------AVHIQGQEPLTTTMLAAAPLQEQKQM 545
Query: 238 LGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQ 297
LGERLFPLIQRM+P+LAGKITGMLLEIDN+ELL+MLEH ESLK+KV+EAVAVLQAHQAKQ
Sbjct: 546 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVLQAHQAKQ 605
Query: 298 AAVKKE 303
A KK+
Sbjct: 606 QATKKD 611
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGR-IIGSKPLYVALAQRKEDRKAHLASQYMQ 59
EDG S+GFGFV F P+ A +A E+NG+ ++ KPLYV AQ+K +R+ L ++ Q
Sbjct: 227 EDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 284
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ ++NG ++ K +YV +++R+ L + +
Sbjct: 133 DETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQLF 73
N+ ++ G+ F
Sbjct: 192 TNVYVKNFGEDF 203
>gi|389610655|dbj|BAM18939.1| polyA-binding protein [Papilio polytes]
Length = 611
Score = 384 bits (986), Expect = e-104, Method: Compositional matrix adjust.
Identities = 208/306 (67%), Positives = 235/306 (76%), Gaps = 25/306 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKEDRKAHL SQYMQR
Sbjct: 328 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT- 119
+A+MRMQQMGQ+FQPG TGGYFVPT+P QRFYGP QMTQIRP PRW A P +RP+ Q+
Sbjct: 388 MASMRMQQMGQIFQPGGTGGYFVPTIPPAQRFYGPAQMTQIRPSPRWTAQPAVRPNAQSA 447
Query: 120 AQGFPNI-PQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAG 178
A +PN+ P FR APR Q +R ++M ARPITGQ G ++AP V +G
Sbjct: 448 ASAYPNMQPPFRPAPRGP-AQAALR-SSMGARPITGQQ--GVATAASIRAP---IVPQSG 500
Query: 179 RQTGGYNKYPVRN-PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQM 237
R G +RN P QP AVH+QGQEPLT+TMLAAA QEQKQM
Sbjct: 501 RPAGYKYTSNMRNPPAPQP---------------AVHIQGQEPLTTTMLAAAPLQEQKQM 545
Query: 238 LGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQ 297
LGERLFPLIQRM+P+LAGKITGMLLEIDN+ELL+MLEH ESLK+KV+EAVAVLQAHQAKQ
Sbjct: 546 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVLQAHQAKQ 605
Query: 298 AAVKKE 303
A KK+
Sbjct: 606 QATKKD 611
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGR-IIGSKPLYVALAQRKEDRKAHLASQYMQ 59
EDG S+GFGFV F P+ A +A E+NG+ ++ KPLYV AQ+K +R+ L ++ Q
Sbjct: 227 EDGSSRGFGFVAFEDPDAAERACMELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 284
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ ++NG ++ K +YV +++R+ L + +
Sbjct: 133 DETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQLF 73
N+ ++ G+ F
Sbjct: 192 TNVYVKNFGEDF 203
>gi|340719924|ref|XP_003398394.1| PREDICTED: polyadenylate-binding protein 1-like isoform 4 [Bombus
terrestris]
Length = 612
Score = 376 bits (966), Expect = e-102, Method: Compositional matrix adjust.
Identities = 208/307 (67%), Positives = 230/307 (74%), Gaps = 26/307 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS+PEEATKAVTEMNGRII +KPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 328 MMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+ANMRMQQMGQ+FQPG G YFVPT+PQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 388 LANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQT 447
Query: 120 -AQGFPNIPQ-FRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAA 177
+ GF + FR+APRA T Q + +SARPIT VSA
Sbjct: 448 GSSGFATMQGPFRAAPRAPTAQPGAMRSTLSARPITA-----------------VGVSAQ 490
Query: 178 GRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQM 237
R + +RNP PQA I QAVH+QGQEPLT++MLAAA PQEQKQM
Sbjct: 491 SRPSNYKYTSNMRNP---PQAM--AIPTPTPVQQAVHIQGQEPLTASMLAAAPPQEQKQM 545
Query: 238 LGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQ 297
LGERLFPLIQ MYP+L GKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAVLQAHQAKQ
Sbjct: 546 LGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQ 605
Query: 298 A-AVKKE 303
A A KKE
Sbjct: 606 AVASKKE 612
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+ +DG+S+GFGFV F P+ A +AV E+NG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 IKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQ 284
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ +NG ++ K +YV +++R+ L + +
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 TNVYVKNFGE 201
>gi|383862669|ref|XP_003706806.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Megachile rotundata]
Length = 612
Score = 375 bits (964), Expect = e-101, Method: Compositional matrix adjust.
Identities = 209/308 (67%), Positives = 229/308 (74%), Gaps = 28/308 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFS+PEEATKAVTEMNGRII +KPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 328 MMEDGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+ANMRMQQMGQ+F PG G YFVPT+PQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 388 LANMRMQQMGQMFPPGGAGNYFVPTIPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQT 447
Query: 120 AQ-GFPNIPQ-FRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAA 177
GF + FR+ PRA T Q + +SARPIT VSA
Sbjct: 448 GNSGFATMQGPFRTTPRAPTAQAGTMRSTLSARPITA-----------------VGVSAQ 490
Query: 178 GRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGV-QAVHVQGQEPLTSTMLAAAQPQEQKQ 236
R + +RNP PQA PA V QAVH+QGQEPLT++MLAAA PQEQKQ
Sbjct: 491 SRPSNYKYTSNMRNP---PQAM---AIPAPTPVQQAVHIQGQEPLTASMLAAAPPQEQKQ 544
Query: 237 MLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAK 296
MLGERLFPLIQ MYP+L GKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAVLQAHQAK
Sbjct: 545 MLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAK 604
Query: 297 QA-AVKKE 303
QA A KKE
Sbjct: 605 QAVASKKE 612
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+ +DG+S+GFGFV F P+ A +AV E+NG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 IKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQ 284
Score = 43.9 bits (102), Expect = 0.100, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ ++NG ++ K +YV +++R+ L + +
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 TNVYVKNFGE 201
>gi|357628251|gb|EHJ77641.1| poly A binding protein [Danaus plexippus]
Length = 601
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 204/306 (66%), Positives = 232/306 (75%), Gaps = 26/306 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKEDRKAHL SQYMQR
Sbjct: 319 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQR 378
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT- 119
+A+MRMQQMGQ+FQPGS GGYFVPT+P QRFYGP Q+TQ+RP RW A P +RPS QT
Sbjct: 379 MASMRMQQMGQIFQPGSAGGYFVPTIPPAQRFYGPAQITQMRPSQRWTAQPPVRPSTQTA 438
Query: 120 AQGFPNIPQ-FRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAG 178
A +PN+ FR R T QT +R ++ ARPITGQ G ++AP + +G
Sbjct: 439 ASAYPNMQAPFRPTTRGPT-QTALR-TSLGARPITGQQ--GVAAAPSIRAP----LVPSG 490
Query: 179 RQTGGYNKYPVRN-PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQM 237
R G VRN P QP AVH+QGQEPLT++MLAAA QEQKQM
Sbjct: 491 RTAGYKYTSTVRNPPAPQP---------------AVHIQGQEPLTASMLAAAPLQEQKQM 535
Query: 238 LGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQ 297
LGERLFPLIQRM+P+LAGKITGMLLEIDN+ELL+MLEH ESLK+KV+EAVAVLQAHQAKQ
Sbjct: 536 LGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHGESLKAKVDEAVAVLQAHQAKQ 595
Query: 298 AAVKKE 303
A KK+
Sbjct: 596 QATKKD 601
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGR-IIGSKPLYVALAQRKEDRKAHLASQYMQ 59
EDG S+GFGFV F P+ A +A E+NG+ ++ KPLYV AQ+K +R+ L ++ Q
Sbjct: 218 EDGSSRGFGFVAFEDPDAAERACLELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 275
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G SKG+GFV F + E A K++ ++NG ++ K +YV +++R+ L + +
Sbjct: 124 DENGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEK-AKLF 182
Query: 62 ANMRMQQMGQLF 73
N+ ++ G+ F
Sbjct: 183 TNVYVKNFGEDF 194
>gi|307165845|gb|EFN60208.1| Polyadenylate-binding protein 1 [Camponotus floridanus]
Length = 635
Score = 375 bits (962), Expect = e-101, Method: Compositional matrix adjust.
Identities = 212/315 (67%), Positives = 239/315 (75%), Gaps = 19/315 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS PEEATKAVTEMNGRI+GSKPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 328 MMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+AN+RMQQMGQ+FQPG+ G YFVPTLPQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 388 MANVRMQQMGQIFQPGNAGSYFVPTLPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQT 447
Query: 120 AQ-GFPNI---PQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA---PGPA 172
GF ++ P + + +R + MSARPITGQ + GG MQ+ GPA
Sbjct: 448 GNSGFASMQSAPFRAAPRAPAAQAGALRNS-MSARPITGQQAV---GGANMQSRSMAGPA 503
Query: 173 SVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGV-QAVHVQGQEPLTSTMLAAA 229
+ G+ KY +RNP PQ + P+ V QAVH+QGQEPLT++MLAAA
Sbjct: 504 VGVSPGQSRPPNYKYTANMRNP---PQTAMALPAPSGPSVQQAVHIQGQEPLTASMLAAA 560
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
PQEQKQMLGERLFPLIQ MYP L GKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAV
Sbjct: 561 PPQEQKQMLGERLFPLIQCMYPSLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAV 620
Query: 290 LQAHQAKQA-AVKKE 303
LQAHQAKQA A KKE
Sbjct: 621 LQAHQAKQAVAPKKE 635
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+DG+S+GFGFV F P+ A +AV E+NG+ I K +YV AQ+K +R+ L ++ Q
Sbjct: 227 DDGKSRGFGFVAFEDPDAAEQAVLELNGKDISEGKCMYVGRAQKKAERQQELKRKFEQ 284
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ ++NG ++ K +YV +++R+ L + +
Sbjct: 133 DESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 TNVYVKNFGE 201
>gi|156554126|ref|XP_001604025.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Nasonia
vitripennis]
Length = 627
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 210/310 (67%), Positives = 232/310 (74%), Gaps = 17/310 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFS EEATKAVTEMNGRI+GSKPLYVALAQRKEDRKAHLASQY+QR
Sbjct: 328 MMEDGRSKGFGFVCFSLAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYLQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+AN+RMQ MGQ+FQ G G YFVPTLPQPQRFYGP QM QIR PRW A P +RP+ Q A
Sbjct: 388 VANIRMQHMGQVFQAGGAGSYFVPTLPQPQRFYGPAQMAQIRTTPRWPAQP-VRPNAQAA 446
Query: 121 -QGFPNIPQ-FRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ---APGPASVS 175
F + FR+APRA T Q+ + +SARPITGQ + G MQ GPA
Sbjct: 447 GSNFATMQTPFRAAPRAPTAQSSMARNALSARPITGQQAVP--GAANMQNRSMAGPAVGV 504
Query: 176 AAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQE 233
+ +T Y KY +RNP PQ Q A QAVH+QGQEPLT++MLA A PQE
Sbjct: 505 SPQSRTSNY-KYTANMRNP---PQTMAMPAQTPAQ--QAVHIQGQEPLTASMLADAPPQE 558
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQMLGERLFPLIQ MYP L GKITGMLLEIDN+ELL+MLEH ESLK+KVEEAVAVLQAH
Sbjct: 559 QKQMLGERLFPLIQCMYPHLTGKITGMLLEIDNSELLHMLEHGESLKAKVEEAVAVLQAH 618
Query: 294 QAKQAAVKKE 303
QAKQ AVKKE
Sbjct: 619 QAKQ-AVKKE 627
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+DG+S+GFGFV F P A +AV ++NG+ I K +YV AQ+K +R+ L ++ Q
Sbjct: 227 DDGKSRGFGFVAFEDPNAADRAVADLNGKEIAEGKIMYVGRAQKKAERQQELKRKFEQ 284
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ +NG ++ K +YV +++R+ L + +
Sbjct: 133 DESGSSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFISRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 TNVYVKNFGE 201
>gi|340719922|ref|XP_003398393.1| PREDICTED: polyadenylate-binding protein 1-like isoform 3 [Bombus
terrestris]
Length = 621
Score = 374 bits (959), Expect = e-101, Method: Compositional matrix adjust.
Identities = 211/314 (67%), Positives = 233/314 (74%), Gaps = 31/314 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS+PEEATKAVTEMNGRII +KPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 328 MMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+ANMRMQQMGQ+FQPG G YFVPT+PQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 388 LANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQT 447
Query: 120 -AQGFPNIPQ-FRSAPRASTG-------QTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
+ GF + FR+APRA T Q + GANM +R S GP G
Sbjct: 448 GSSGFATMQGPFRAAPRAPTAQPGAMRSQQTVGGANMQSR-----SMAGPAVG------- 495
Query: 171 PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
VSA R + +RNP PQA I QAVH+QGQEPLT++MLAAA
Sbjct: 496 ---VSAQSRPSNYKYTSNMRNP---PQAM--AIPTPTPVQQAVHIQGQEPLTASMLAAAP 547
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
PQEQKQMLGERLFPLIQ MYP+L GKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAVL
Sbjct: 548 PQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVL 607
Query: 291 QAHQAKQA-AVKKE 303
QAHQAKQA A KKE
Sbjct: 608 QAHQAKQAVASKKE 621
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+ +DG+S+GFGFV F P+ A +AV E+NG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 IKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQ 284
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ +NG ++ K +YV +++R+ L + +
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 TNVYVKNFGE 201
>gi|350408506|ref|XP_003488427.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Bombus
impatiens]
Length = 621
Score = 372 bits (956), Expect = e-101, Method: Compositional matrix adjust.
Identities = 212/315 (67%), Positives = 234/315 (74%), Gaps = 33/315 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS+PEEATKAVTEMNGRII +KPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 328 MMEEGRSKGFGFVCFSAPEEATKAVTEMNGRIIVTKPLYVALAQRKEDRKAHLASQYMQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+ANMRMQQMGQ+FQPG G YFVPT+PQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 388 LANMRMQQMGQIFQPGGAGNYFVPTIPQPQRFYGPAQMAQIRTTPRWPAQPNQVRPNAQT 447
Query: 120 -AQGFPNIPQ-FRSAPRASTG-------QTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
+ GF + FR+APRA T Q + GANM R S GP G
Sbjct: 448 GSSGFATMQGPFRAAPRAPTAQPGAMRSQQTVGGANMQNR-----SMAGPAVG------- 495
Query: 171 PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGV-QAVHVQGQEPLTSTMLAAA 229
V+A R + +RNP PQA PA V QAVH+QGQEPLT++MLAAA
Sbjct: 496 ---VTAQSRPSNYKYTSNMRNP---PQAM---AIPAPTPVQQAVHIQGQEPLTASMLAAA 546
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
PQEQKQMLGERLFPLIQ MYP+L GKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAV
Sbjct: 547 PPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAV 606
Query: 290 LQAHQAKQA-AVKKE 303
LQAHQAKQA A KKE
Sbjct: 607 LQAHQAKQAVASKKE 621
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+ +DG+S+GFGFV F P+ A +AV E+NG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 IKDDGKSRGFGFVAFEDPDAAEQAVLELNGKEVAEGKCMYVGRAQKKAERQQELKRKFEQ 284
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 39/70 (55%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ +NG ++ K +YV +++R+ L + +
Sbjct: 133 DESGVSKGYGFVHFETEEAANKSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 TNVYVKNFGE 201
>gi|332030568|gb|EGI70256.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 678
Score = 372 bits (955), Expect = e-100, Method: Compositional matrix adjust.
Identities = 210/315 (66%), Positives = 239/315 (75%), Gaps = 19/315 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS PEEATKAVTEMNGRI+GSKPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 371 MMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQR 430
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+AN+RMQQMGQ+FQP + G YFVPTLPQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 431 MANVRMQQMGQIFQPSNAGSYFVPTLPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNTQT 490
Query: 120 -AQGFPNI---PQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA---PGPA 172
GF ++ P + + +R + MSARPITGQ + GG MQ+ GPA
Sbjct: 491 GTSGFASMQAAPFRAAPRAPAAQAGALRNS-MSARPITGQQAV---GGANMQSRTMAGPA 546
Query: 173 SVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGV-QAVHVQGQEPLTSTMLAAA 229
+ G+ KY +RNP PQ + P+ V QAVH+QGQEPLT++MLAAA
Sbjct: 547 VGVSPGQSRPSNYKYTANMRNP---PQTAMAIPAPSGPSVQQAVHIQGQEPLTASMLAAA 603
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
PQEQKQMLGERLFPLIQ MYP+L GKITGMLLEIDN+ELL+MLEH+ESLK+KVEEAVAV
Sbjct: 604 PPQEQKQMLGERLFPLIQCMYPQLTGKITGMLLEIDNSELLHMLEHSESLKAKVEEAVAV 663
Query: 290 LQAHQAKQA-AVKKE 303
LQAHQAKQA A KKE
Sbjct: 664 LQAHQAKQAVAPKKE 678
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+DG+S+GFGFV F P+ A +AV E+NG+ I K +YV AQ+K +R+ L ++ Q
Sbjct: 270 DDGKSRGFGFVAFEDPDAAEQAVLELNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQ 327
Score = 43.9 bits (102), Expect = 0.085, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ ++NG ++ K +YV +++R+ L + +
Sbjct: 176 DESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 234
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 235 TNVYVKNFGE 244
>gi|91095037|ref|XP_975975.1| PREDICTED: similar to poly A binding protein isoform 4 [Tribolium
castaneum]
gi|270014772|gb|EFA11220.1| hypothetical protein TcasGA2_TC005185 [Tribolium castaneum]
Length = 607
Score = 372 bits (954), Expect = e-100, Method: Compositional matrix adjust.
Identities = 201/305 (65%), Positives = 224/305 (73%), Gaps = 27/305 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M ED RSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKEDRKAHL SQYMQR
Sbjct: 328 MMEDNRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLTSQYMQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQ-T 119
+AN+RM QMGQ QPG++ GYFVPT+P PQRFYG QM QIR PRW A +RP Q +
Sbjct: 388 MANIRMHQMGQFIQPGTSSGYFVPTIPAPQRFYGAAQMAQIRTNPRWPAQTPVRPGAQGS 447
Query: 120 AQGFPNIP-QFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAG 178
A + IP +R+APR +R RPITGQ + G P+ + A V+ AG
Sbjct: 448 ANPYGTIPTTYRAAPRPPNQSAALRSNINVPRPITGQQPPNIQ-GRPLAS--QAVVAPAG 504
Query: 179 RQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQML 238
GI AA QAVH+QGQEPLT+TMLAAA PQEQKQML
Sbjct: 505 L----------------------GISNAAPVQQAVHIQGQEPLTATMLAAAPPQEQKQML 542
Query: 239 GERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQA 298
GERLFPLIQRMYP+LAGKITGMLLEIDN+ELL+MLEHNESLK+KVEEAVAVLQAHQAKQA
Sbjct: 543 GERLFPLIQRMYPDLAGKITGMLLEIDNSELLHMLEHNESLKAKVEEAVAVLQAHQAKQA 602
Query: 299 AVKKE 303
A+KKE
Sbjct: 603 AIKKE 607
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGR-IIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+DG+SKGFGFV F SPE A AV +NG+ II KPLYV AQ+K +R+ L +R
Sbjct: 227 DDGKSKGFGFVAFESPEAAETAVEALNGKEIIDGKPLYVGRAQKKAERQQELK----RRF 282
Query: 62 ANMRMQQMGQ 71
++M+++ +
Sbjct: 283 EALKMERLNR 292
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G SKG+GFV F + E A K++ ++NG ++ K +YV +++R+ L + +
Sbjct: 133 DENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 TNVYVKNFGE 201
>gi|328713207|ref|XP_001947071.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 371 bits (953), Expect = e-100, Method: Compositional matrix adjust.
Identities = 207/321 (64%), Positives = 241/321 (75%), Gaps = 27/321 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M +DGRSKGFGFVCFSSPEEATKAVT+MNGRI+G+KPLYVALAQRKEDRKAHL SQY+QR
Sbjct: 319 MMDDGRSKGFGFVCFSSPEEATKAVTDMNGRIVGTKPLYVALAQRKEDRKAHLDSQYLQR 378
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSG--Q 118
NMRMQ +G ++QPG++ GYFVPT+PQPQRFYGPTQMTQIRPQPRWA+ PQ+R
Sbjct: 379 NTNMRMQSIGPIYQPGASSGYFVPTIPQPQRFYGPTQMTQIRPQPRWASQPQVRAGTPQA 438
Query: 119 TAQGFPNI-PQFRS----APRASTGQTVI-RGA--NMSARPI-TGQSTM-GPRGGGPMQA 168
A G+PN+ Q+R+ AP + Q + R A + +ARPI T Q M G G ++
Sbjct: 439 AAAGYPNMATQYRNIGARAPVPAGQQAALARNAMVDRNARPISTAQQQMPGAVAAGGVRV 498
Query: 169 PGPASVSAAGRQTGGYNKYP--VRNPGTQP----QAQIGGIQPAAAGVQAVHVQGQEPLT 222
PG R TG KY +RNP Q QAQ G QP A AVHV GQEPLT
Sbjct: 499 PG-------ARGTGSGYKYTANMRNPPGQAQGMGQAQPG--QPPAPVQAAVHVHGQEPLT 549
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+TMLA A+P++QKQMLGERLFPLIQRMYPEL GKITGMLLEIDN++LL+MLEH+ESLK+K
Sbjct: 550 ATMLATAKPEDQKQMLGERLFPLIQRMYPELTGKITGMLLEIDNSDLLHMLEHHESLKNK 609
Query: 283 VEEAVAVLQAHQAKQAAVKKE 303
VEE VAVLQAHQA+Q VKKE
Sbjct: 610 VEEVVAVLQAHQAQQTQVKKE 630
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 44/73 (60%), Gaps = 2/73 (2%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRII-GSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+DG S+GFGFV F PEEA KAVTE++G+ K YV AQ+K +R+ L ++ Q +
Sbjct: 218 DDGSSRGFGFVAFEDPEEAEKAVTELHGKESPEGKTYYVGRAQKKAERQQELKRKFEQYK 277
Query: 61 IANMRMQQMGQLF 73
I M Q L+
Sbjct: 278 IERMNRYQGVNLY 290
Score = 43.9 bits (102), Expect = 0.099, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ----- 56
E G+SKG+GFV F + AT+++ ++NG ++ K ++V ++DR+ L +
Sbjct: 124 DETGQSKGYGFVHFEMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLYT 183
Query: 57 --YMQRIA-NMRMQQMGQLFQ 74
Y++ I N+ +++ ++F+
Sbjct: 184 NVYIKNIDENVNDKELFEMFE 204
>gi|307207781|gb|EFN85399.1| Polyadenylate-binding protein 1 [Harpegnathos saltator]
Length = 552
Score = 368 bits (944), Expect = 2e-99, Method: Compositional matrix adjust.
Identities = 213/306 (69%), Positives = 235/306 (76%), Gaps = 18/306 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS PEEATKAVTEMNGRI+GSKPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 251 MMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQR 310
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQT 119
+AN+RMQQMGQ+FQPG+ G YFVPTLPQPQRFYGP QM QIR PRW A P Q+RP+ QT
Sbjct: 311 MANVRMQQMGQIFQPGNAGSYFVPTLPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQT 370
Query: 120 -AQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA---PGPA-SV 174
+ GF FR+APRA Q +SARPITGQ + GG MQ+ GPA V
Sbjct: 371 GSSGFAMQAPFRAAPRAPAAQAGAMRNTLSARPITGQQAV---GGANMQSRSMAGPAVGV 427
Query: 175 SAAGRQTGGYNKYPVRN-PGTQPQAQIGGIQPAAAGV-QAVHVQGQEPLTSTMLAAAQPQ 232
S R + +RN P T P PA A V QAVH+QGQEPLT++MLAAA PQ
Sbjct: 428 SPQSRPSNYKYTANMRNPPQTMP-------MPAQAPVQQAVHIQGQEPLTASMLAAAPPQ 480
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
EQKQMLGERLFPLIQ MYP L GKITGMLLEIDN+ELL+MLEH+ESLK+KVEEAVAVLQA
Sbjct: 481 EQKQMLGERLFPLIQCMYPALTGKITGMLLEIDNSELLHMLEHSESLKAKVEEAVAVLQA 540
Query: 293 HQAKQA 298
HQAKQA
Sbjct: 541 HQAKQA 546
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/55 (34%), Positives = 33/55 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
E G SKG+GFV F + E A K++ ++NG ++ K +YV +++R+ L +
Sbjct: 133 DESGASKGYGFVHFETEEAANKSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK 187
>gi|148298695|ref|NP_001091823.1| poly A binding protein [Bombyx mori]
gi|111608107|gb|ABH10797.1| poly A binding protein [Bombyx mori]
Length = 603
Score = 367 bits (942), Expect = 4e-99, Method: Compositional matrix adjust.
Identities = 203/307 (66%), Positives = 229/307 (74%), Gaps = 26/307 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKEDRKAHL SQYMQR
Sbjct: 319 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEDRKAHLTSQYMQR 378
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRP-QPRWAAAPQMRPSGQT 119
+A+MRMQQMGQ+FQP G+FVP+LP R+YGP QMTQIRP PRW A P +RPS Q
Sbjct: 379 MASMRMQQMGQIFQPSGASGFFVPSLPPAPRYYGPAQMTQIRPTTPRWNAQPPVRPSTQA 438
Query: 120 AQGFPNI-PQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAG 178
A + N+ P +R APRA Q+ IR ++ ARPITGQ + + P VS +
Sbjct: 439 ASAYANMQPTYRPAPRAP-AQSTIR-TSLGARPITGQQGV----AAAAASIRPPLVSQSS 492
Query: 179 RQTGGYNKYP-VRN-PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQ 236
R Y P +RN P QP AVH+QGQEPLTSTMLAAA QEQKQ
Sbjct: 493 R-PANYKYTPNMRNPPAPQP---------------AVHIQGQEPLTSTMLAAAPLQEQKQ 536
Query: 237 MLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAK 296
MLGERLFPLIQRM+P+LAGKITGMLLEIDN+ELL+MLEH ESLK+KV+EAVAVLQAHQAK
Sbjct: 537 MLGERLFPLIQRMHPDLAGKITGMLLEIDNSELLHMLEHAESLKAKVDEAVAVLQAHQAK 596
Query: 297 QAAVKKE 303
Q A KKE
Sbjct: 597 QQATKKE 603
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGR-IIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+DG S+GFGFV F P+ A +A E+NG+ ++ KPLYV AQ+K +R+ L ++ Q
Sbjct: 218 DDGNSRGFGFVAFEDPDAAERACIELNGKELVEGKPLYVGRAQKKAERQKELKRKFEQ 275
Score = 44.3 bits (103), Expect = 0.067, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 1/72 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ ++NG ++ K +YV +++R+ L + +
Sbjct: 124 DETGASKGYGFVHFETEEAANKSIEKVNGMLLNGKMVYVGRFIPRKEREKELGEK-AKLF 182
Query: 62 ANMRMQQMGQLF 73
N+ ++ G+ F
Sbjct: 183 TNVYVKNFGEDF 194
>gi|332030569|gb|EGI70257.1| Polyadenylate-binding protein 1 [Acromyrmex echinatior]
Length = 657
Score = 360 bits (925), Expect = 3e-97, Method: Compositional matrix adjust.
Identities = 207/316 (65%), Positives = 235/316 (74%), Gaps = 21/316 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS PEEATKAVTEMNGRI+GSKPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 350 MMEEGRSKGFGFVCFSQPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQR 409
Query: 61 IANMRMQQMGQLF-QPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP-QMRPSGQ 118
+ANMRMQQMGQ+F QPG+ G YFVPTLPQPQRFYGP QM QIR PRW A P Q+RP+ Q
Sbjct: 410 MANMRMQQMGQIFHQPGNAGSYFVPTLPQPQRFYGPAQMAQIRATPRWPAQPNQVRPNAQ 469
Query: 119 TAQ-GFPNI---PQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA---PGP 171
T GF ++ P + + +R NMSARPITG + MQ+ GP
Sbjct: 470 TGNSGFASMQAAPFRAAPRAPAAQAGALRN-NMSARPITGLQAVS----NNMQSRSMAGP 524
Query: 172 ASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQ-AVHVQGQEPLTSTMLAA 228
A + G+ KY +RNP PQA + P+ +Q AVH+QGQEPLT++MLAA
Sbjct: 525 AVGVSPGQSRPSNYKYTANMRNP---PQAAMALPTPSGPSMQQAVHIQGQEPLTASMLAA 581
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A PQEQKQMLGERLFPLI M P+L GKITGMLLEIDN+ELL+MLEH ESLK+KV+EAVA
Sbjct: 582 APPQEQKQMLGERLFPLIHDMNPQLTGKITGMLLEIDNSELLHMLEHKESLKAKVDEAVA 641
Query: 289 VLQAHQAKQA-AVKKE 303
VLQAHQAKQA A KKE
Sbjct: 642 VLQAHQAKQAVAPKKE 657
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
+ +DG+S+GFGFV F P A +AV ++NG+ I K +YV AQ+K +R+ L ++ Q
Sbjct: 247 IKDDGKSRGFGFVAFEDPNSAEQAVLDLNGKEIAEGKCMYVGRAQKKAERQQELKRKFEQ 306
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ ++NG ++ K +YV +++R+ L + +
Sbjct: 155 DESGASKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGKFIPRKERQKELGEK-AKLF 213
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 214 TNVYVKNFGE 223
>gi|242025596|ref|XP_002433210.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
gi|212518751|gb|EEB20472.1| Polyadenylate-binding protein, putative [Pediculus humanus
corporis]
Length = 637
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 205/312 (65%), Positives = 227/312 (72%), Gaps = 28/312 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSS EEATKAVTEMNGRI+GSKPLYVALAQRKEDRKAHLASQYMQ+
Sbjct: 328 MLEDGRSKGFGFVCFSSAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQK 387
Query: 61 IANMRMQQMGQ-LFQPGSTGGYFVPTLPQ-PQRFYGPTQMTQIRP-QPRWAAAPQMRPSG 117
+AN+RMQQ+GQ +FQP S+GGYFVPT+PQ PQRF+GP QM QIR RW PQ RP
Sbjct: 388 MANIRMQQIGQPVFQP-SSGGYFVPTIPQPPQRFFGPAQMAQIRTATTRWPTQPQSRPGT 446
Query: 118 QTAQ-GFPNIPQFRSAPRAS-TGQTVIRGANMSARPITGQSTMGPRGGGPMQ------AP 169
Q Q +P IP Q +R ++SARPIT GGGPMQ AP
Sbjct: 447 QQPQTAYPAIPGPFRPGPRPQAAQPALR--SISARPIT--------GGGPMQTQIPPRAP 496
Query: 170 GP--ASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
P SV+AA R T +RNP PQ +G + QAVHVQGQEPLT+TMLA
Sbjct: 497 MPPTVSVNAAQRPTNYKYTANMRNP---PQT-LGHVAHQPQVQQAVHVQGQEPLTTTMLA 552
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
A QEQKQMLGERLFPLI MY +LAGKITGMLLEIDN+ELL+MLEH ESLKSKVEEAV
Sbjct: 553 DAPLQEQKQMLGERLFPLISAMYSKLAGKITGMLLEIDNSELLHMLEHRESLKSKVEEAV 612
Query: 288 AVLQAHQAKQAA 299
AVLQAH+AKQAA
Sbjct: 613 AVLQAHEAKQAA 624
Score = 62.4 bits (150), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 47/70 (67%), Gaps = 5/70 (7%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGR-IIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+DG+SKGFGFV F PE A KAV +NG+ I+ KPL+V AQ+K +R+ L ++ Q
Sbjct: 227 DDGKSKGFGFVAFEDPEAAEKAVASLNGKEIVEGKPLFVGRAQKKAERQQELKRKFEQ-- 284
Query: 62 ANMRMQQMGQ 71
++M+++ +
Sbjct: 285 --LKMERLSR 292
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A K++ ++NG ++ K ++V +++R+ L + +R
Sbjct: 133 DESGTSKGYGFVHFETEEAANKSIDKVNGMLLNGKRVFVGKFIPRKEREKELGEK-AKRF 191
Query: 62 ANMRMQQMGQLF 73
N+ ++ G+ F
Sbjct: 192 TNVYVKNFGEDF 203
>gi|332374002|gb|AEE62142.1| unknown [Dendroctonus ponderosae]
Length = 634
Score = 344 bits (883), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 196/303 (64%), Positives = 217/303 (71%), Gaps = 15/303 (4%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMR 65
RSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKEDRKAHL SQYMQR+ANMR
Sbjct: 341 RSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLTSQYMQRMANMR 400
Query: 66 MQQMGQLFQPGSTGGYFVPTLPQPQRFY-GPTQMTQIRPQPRWAAAPQMRPSGQTAQGFP 124
M QMG F P YFVPT+P QR++ G TQ+T IR PRWAA +RP Q
Sbjct: 401 MHQMGHQFMPPGPSSYFVPTIPTAQRYFTGGTQLTPIRSNPRWAAQTPIRPGAQGGTAAY 460
Query: 125 NIPQFRSAPRASTGQTVIR---GANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQT 181
+R + R +R G RPITGQ +G P+ G V A G +
Sbjct: 461 MANSYRPSARPPNQPMAMRNNIGLGNVPRPITGQQPPNMQGR-PL--AGQQVVVATGSRA 517
Query: 182 GGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLG 239
+ KY +RNP PQA G PA QAVH+QGQEPLT+TMLAAAQPQEQKQMLG
Sbjct: 518 ATF-KYTSNMRNP---PQAM--GTMPATPVQQAVHIQGQEPLTATMLAAAQPQEQKQMLG 571
Query: 240 ERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
ERLFPLIQRMY +LAGKITGMLLEIDN ELL+MLEHNESLK+KVEEAVAVLQAHQAKQAA
Sbjct: 572 ERLFPLIQRMYADLAGKITGMLLEIDNTELLHMLEHNESLKNKVEEAVAVLQAHQAKQAA 631
Query: 300 VKK 302
+KK
Sbjct: 632 IKK 634
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 46/70 (65%), Gaps = 5/70 (7%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGR-IIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+DG+SKGFGFV F SPE A AV +NG+ ++ KPLYV AQ+K +R+ L +R
Sbjct: 227 DDGKSKGFGFVAFESPEAAETAVDALNGKELVEGKPLYVGRAQKKAERQQELK----RRF 282
Query: 62 ANMRMQQMGQ 71
++M+++ +
Sbjct: 283 EALKMERLNR 292
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G SKG+GFV F + E A K++ ++NG ++ K +YV +++R+ L + +
Sbjct: 133 DENGTSKGYGFVHFETEEAANKSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 TNVYVKNFGE 201
>gi|193592023|ref|XP_001950415.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 630
Score = 344 bits (882), Expect = 3e-92, Method: Compositional matrix adjust.
Identities = 189/320 (59%), Positives = 233/320 (72%), Gaps = 25/320 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M +DGRSKGFGFVCFSSPEEATKAVTEMN RI+G+KPLYVALAQRKE+RKAHL +QY+Q
Sbjct: 319 MMDDGRSKGFGFVCFSSPEEATKAVTEMNNRIVGTKPLYVALAQRKEERKAHLNAQYLQS 378
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSG--Q 118
NMRMQ +G ++QPG++ GYFVPT+PQ QRFYGP QMTQIRPQPRWA+ PQ+R +
Sbjct: 379 NTNMRMQSIGPIYQPGASSGYFVPTIPQGQRFYGPAQMTQIRPQPRWASQPQVRIATPQN 438
Query: 119 TAQGFPNI-PQFRS----APRASTGQTVIRG---ANMSARPITG--QSTMGPRGGGPMQA 168
A G PN+ Q+R+ AP + Q G N ++RPI+ Q G G ++
Sbjct: 439 AAAGHPNMATQYRNIGARAPVPAGQQAAFTGNSMVNRNSRPISTAQQQIPGAVSAGSVRV 498
Query: 169 PGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAA--AGVQ-AVHVQGQEPLTS 223
P + R +G KY +RNP + Q +G QP A VQ A+HV GQEPLT+
Sbjct: 499 P-------SARSSGSGYKYTANMRNPPGEAQG-MGQAQPRQPPAPVQAALHVHGQEPLTA 550
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
+MLA+A+P++QKQMLGERLFPLIQR+YP+ GKITGMLLEIDN+E+L+MLEH ESLK KV
Sbjct: 551 SMLASAKPEDQKQMLGERLFPLIQRIYPKFTGKITGMLLEIDNSEVLHMLEHQESLKIKV 610
Query: 284 EEAVAVLQAHQAKQAAVKKE 303
+EAVAV+QAHQ +Q VKKE
Sbjct: 611 QEAVAVIQAHQTQQTQVKKE 630
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRII-GSKPLYVALAQRKEDRKAHLASQYMQ 59
+DG S+GFGFV F P+EA KAV+E++G+ K YV AQ+K +R+ L ++ Q
Sbjct: 216 FKDDGSSRGFGFVAFEDPKEAEKAVSELHGKESPEGKTYYVGRAQKKAERQNELKRKFEQ 275
Query: 60 -RIANMRMQQMGQLF 73
+I M Q L+
Sbjct: 276 YKIERMNRYQGINLY 290
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ----- 56
E G+SKG+GFV F + AT+++ ++NG ++ K ++V ++DR+ L +
Sbjct: 124 DETGQSKGYGFVHFDMEQSATQSIEKVNGMLLNGKKVFVGRFVGRKDREKELGQKAKLFT 183
Query: 57 --YMQRIA-NMRMQQMGQLFQ 74
Y++ I N+ +++ ++F+
Sbjct: 184 NVYIKNIDENVNDKELFEMFE 204
>gi|328715672|ref|XP_001946271.2| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 964
Score = 338 bits (866), Expect = 2e-90, Method: Compositional matrix adjust.
Identities = 194/341 (56%), Positives = 232/341 (68%), Gaps = 56/341 (16%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M +DGRSKGFGFV FSSPEEATKAVT+MNGRI+G+KPLYV LAQRK+DRKAHL SQY QR
Sbjct: 633 MMDDGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRKKDRKAHLDSQYSQR 692
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSG-QT 119
NMRMQ +G ++QPG++ GYFVPT+PQPQ FYGPTQMTQIR QPRWA Q+R QT
Sbjct: 693 NTNMRMQSIGPIYQPGASNGYFVPTIPQPQYFYGPTQMTQIRSQPRWAFQSQVRAGTPQT 752
Query: 120 AQ-GFPNI-PQFRS----AP-----RASTGQTVIRGANMSARPI-TGQSTM-GPRGGGPM 166
A G+PN+ Q ++ AP +A+ + V+ N ARPI T Q M G G +
Sbjct: 753 AAPGYPNMATQHQNIGARAPVPAGQQAALARNVMVDTN--ARPISTAQQKMPGAVSAGSV 810
Query: 167 QAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPA------------------ 206
PG R TG KY +RNP +Q Q IG QP
Sbjct: 811 HVPG-------ARDTGSGYKYTPNMRNPLSQDQG-IGQAQPGQAQGMGQSQPGQAQGMGQ 862
Query: 207 -----AAGVQ-------AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELA 254
A G++ AVHV GQEPLT+TMLA A+P++QKQMLGERLFPLI+RMYPEL
Sbjct: 863 AQSGQAQGMEQVQPDKAAVHVYGQEPLTATMLATAKPEDQKQMLGERLFPLIERMYPELT 922
Query: 255 GKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295
GKITGMLLEIDN++LL+MLEH+ESLK++VE+AVA+LQAHQA
Sbjct: 923 GKITGMLLEIDNSDLLHMLEHHESLKNQVEKAVAMLQAHQA 963
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRII-GSKPLYVALAQRKEDRKAHLASQYMQ 59
+DG S+GFGFV F P+EA KAVTE++G+ K YV AQ+K +R+ L ++ Q
Sbjct: 530 FKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQ 589
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ----- 56
E G SKG+GFV F + + AT+++ ++NG ++ K ++V + DR+ L Q
Sbjct: 438 DETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQQAKLYT 497
Query: 57 --YMQRIA-NMRMQQMGQLFQPGST 78
Y++ I N+ +++ ++F+ T
Sbjct: 498 NVYIKNIDENVNEKELFEMFKKYGT 522
>gi|193650237|ref|XP_001943392.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 650
Score = 333 bits (853), Expect = 8e-89, Method: Compositional matrix adjust.
Identities = 194/342 (56%), Positives = 233/342 (68%), Gaps = 56/342 (16%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M +DGRSKGFGFV FSSPEEATKAVT+MNGRI+G+KPLYV LAQRK+DRKAHL SQY QR
Sbjct: 319 MMDDGRSKGFGFVYFSSPEEATKAVTDMNGRIVGTKPLYVTLAQRKKDRKAHLDSQYSQR 378
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSG-QT 119
NMRMQ +G ++QPG++ GYFVPT+PQPQ FYGPTQMTQIR QPRWA Q+R QT
Sbjct: 379 NTNMRMQSIGPIYQPGASNGYFVPTIPQPQYFYGPTQMTQIRSQPRWAFQSQVRAGTPQT 438
Query: 120 AQ-GFPNI-PQFRS----AP-----RASTGQTVIRGANMSARPI-TGQSTM-GPRGGGPM 166
A G+PN+ Q ++ AP +A+ + V+ N ARPI T Q M G G +
Sbjct: 439 AAPGYPNMATQHQNIGARAPVPAGQQAALARNVMVDTN--ARPISTAQQKMPGAVSAGSV 496
Query: 167 QAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPA------------------ 206
PG R TG KY +RNP +Q Q IG QP
Sbjct: 497 HVPG-------ARDTGSGYKYTPNMRNPLSQDQG-IGQAQPGQAQGMGQSQPGQAQGMGQ 548
Query: 207 -----AAGVQ-------AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELA 254
A G++ AVHV GQEPLT+TMLA A+P++QKQMLGERLFPLI+RMYPEL
Sbjct: 549 AQSGQAQGMEQVQPDKAAVHVYGQEPLTATMLATAKPEDQKQMLGERLFPLIERMYPELT 608
Query: 255 GKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAK 296
GKITGMLLEIDN++LL+MLEH+ESLK++VE+AVA+LQAHQA+
Sbjct: 609 GKITGMLLEIDNSDLLHMLEHHESLKNQVEKAVAMLQAHQAQ 650
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 38/60 (63%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRII-GSKPLYVALAQRKEDRKAHLASQYMQ 59
+DG S+GFGFV F P+EA KAVTE++G+ K YV AQ+K +R+ L ++ Q
Sbjct: 216 FKDDGSSRGFGFVAFEDPKEAEKAVTELHGKKSPEGKTYYVNRAQKKTERQQELKRKFEQ 275
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 23/85 (27%), Positives = 47/85 (55%), Gaps = 8/85 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ----- 56
E G SKG+GFV F + + AT+++ ++NG ++ K ++V + DR+ L +
Sbjct: 124 DETGNSKGYGFVHFETKQSATQSIEKVNGMLLNGKKVFVGRFVGRNDREKELGQRAKLYT 183
Query: 57 --YMQRIA-NMRMQQMGQLFQPGST 78
Y++ I N+ +++ ++F+ T
Sbjct: 184 NVYIKNIDENVNEKELFEMFKKYGT 208
>gi|170044609|ref|XP_001849934.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
gi|167867688|gb|EDS31071.1| polyadenylate-binding protein 1 [Culex quinquefasciatus]
Length = 628
Score = 328 bits (840), Expect = 2e-87, Method: Compositional matrix adjust.
Identities = 188/317 (59%), Positives = 216/317 (68%), Gaps = 31/317 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS+ EEATKAVTEMNGRI+GSKPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 318 MLEEGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQR 377
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRW------------- 107
+ANMRMQ MGQ+FQPG GGY+VPT+PQPQRF+G Q++QIR P W
Sbjct: 378 MANMRMQHMGQIFQPGGNGGYYVPTIPQPQRFFGK-QVSQIRTTPGWFRANAANQNAVAA 436
Query: 108 ------AAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPR 161
A +G + N+ + + Q SARPITGQ +
Sbjct: 437 NAAGGAYPAMAAATAGNQYRQAGNVRGQQQQAPNAQAQAASAAMRNSARPITGQ-----Q 491
Query: 162 GGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQE 219
GG MQ A AA + KY +RNP QP A QP A QAVHV+GQE
Sbjct: 492 AGGNMQTRPVAPQMAANQARAANYKYTQNMRNPPAQPVAI--PTQPVAQ--QAVHVKGQE 547
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
PLT+TMLAAAQP EQKQMLGERLFPLI+ MYP +AGKITGMLLEIDN+EL++MLEH+ESL
Sbjct: 548 PLTATMLAAAQPAEQKQMLGERLFPLIEPMYPSIAGKITGMLLEIDNSELVHMLEHSESL 607
Query: 280 KSKVEEAVAVLQAHQAK 296
K+KV+EAVAVL AHQ K
Sbjct: 608 KAKVDEAVAVLHAHQQK 624
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
M ++ +S+GFGFV F +PE A AV E+NG+ +G K LYV AQ+K +R+ L ++ Q
Sbjct: 215 MIKENKSRGFGFVAFENPESAEVAVQELNGKELGDGKVLYVGRAQKKNERQMELKRRFEQ 274
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 17/55 (30%), Positives = 33/55 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
E G SKG+GFV F + E A ++ ++NG ++ +K ++V +++R+ L +
Sbjct: 124 DEKGNSKGYGFVHFETEESANTSIEKVNGMLLNAKKVFVGRFIPRKEREKELGEK 178
>gi|405977322|gb|EKC41780.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 646
Score = 327 bits (838), Expect = 4e-87, Method: Compositional matrix adjust.
Identities = 195/318 (61%), Positives = 225/318 (70%), Gaps = 27/318 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 332 MTEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKAHLASQYMQR 391
Query: 61 IANMRMQ-----QMGQLFQPGSTGGYFVPTLPQPQR-FYGPTQMTQIRPQPRWAAAPQMR 114
I +MRMQ Q+ Q+FQPGS GYFVPT+PQ QR ++ P M +R PRW +R
Sbjct: 392 ITSMRMQGQQIGQVSQMFQPGS-AGYFVPTMPQAQRTYFTPNNMPAMRSNPRWQTT--VR 448
Query: 115 PSGQTAQGF---PNIPQFRSAPRASTGQTVIRGANMSARPITGQST---------MGPRG 162
P+GQ GF P PQ R + TGQT +R A +SARPITGQS + +
Sbjct: 449 PTGQPGSGFQTMPGAPQIRQ--QRPTGQTNVR-AGVSARPITGQSGTPNAQQRMPVNQQV 505
Query: 163 GGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
GG Q P +AA RQ G Y Y Q Q G+Q A QAV VQGQ+PLT
Sbjct: 506 GGRPQGGQPTVPAAANRQQG-YKSYGGGQMMKQQPGQTPGMQQAPP--QAVIVQGQDPLT 562
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+TMLA A PQEQKQMLGERLFPLI M+P+LAGKITGMLLEIDN+ELL+MLE ESL++K
Sbjct: 563 ATMLATAPPQEQKQMLGERLFPLISTMFPDLAGKITGMLLEIDNSELLHMLESQESLEAK 622
Query: 283 VEEAVAVLQAHQAKQAAV 300
V+EAVAVLQAHQAK++A
Sbjct: 623 VKEAVAVLQAHQAKESAT 640
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 32/55 (58%), Gaps = 4/55 (7%)
Query: 11 GFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY----MQRI 61
GFV F PE A KAV +NG K LYV AQ+K +R+A L ++ M+RI
Sbjct: 240 GFVSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKFERIRMERI 294
>gi|157125851|ref|XP_001654419.1| polyadenylate-binding protein [Aedes aegypti]
gi|157125853|ref|XP_001654420.1| polyadenylate-binding protein [Aedes aegypti]
gi|94468824|gb|ABF18261.1| polyadenylate-binding protein [Aedes aegypti]
gi|108873484|gb|EAT37709.1| AAEL010318-PB [Aedes aegypti]
gi|108873485|gb|EAT37710.1| AAEL010318-PA [Aedes aegypti]
Length = 628
Score = 322 bits (825), Expect = 1e-85, Method: Compositional matrix adjust.
Identities = 189/319 (59%), Positives = 216/319 (67%), Gaps = 35/319 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFS+ EEATKAVTEMNGRI+GSKPLYVALAQRKEDRKAHLASQYMQR
Sbjct: 318 MLEEGRSKGFGFVCFSAAEEATKAVTEMNGRIVGSKPLYVALAQRKEDRKAHLASQYMQR 377
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+ANMRMQ MGQ+FQPG GGY+VPTLPQPQRF+ Q++QIR P W A + +
Sbjct: 378 MANMRMQHMGQIFQPGGNGGYYVPTLPQPQRFFSK-QVSQIRTTPGWFRANTNQNAVAAN 436
Query: 121 QGFPNIP---------QFRSAPRASTGQTVIRGANM----------SARPITGQSTMGPR 161
P Q+R A Q SARPITGQ +
Sbjct: 437 AAGGAYPAMAAATAGNQYRQAANVRANQPAPNAQAAQAANAAAMRNSARPITGQ-----Q 491
Query: 162 GGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQ--PQAQIGGIQPAAAGVQAVHVQG 217
GG MQA A AA + KY +RNP Q P A QP A QAVHV+G
Sbjct: 492 AGGNMQARPVAPQMAANQARAANYKYTQNMRNPPAQAVPMA----AQPVAQ--QAVHVKG 545
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
QEPLT++MLAAAQP EQKQMLGERLFPLI+ +YP +AGKITGMLLEIDN+EL++MLEH+E
Sbjct: 546 QEPLTASMLAAAQPAEQKQMLGERLFPLIEPLYPTIAGKITGMLLEIDNSELVHMLEHSE 605
Query: 278 SLKSKVEEAVAVLQAHQAK 296
SLK+KV+EAVAVL AHQ K
Sbjct: 606 SLKAKVDEAVAVLHAHQQK 624
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
M +DG+S+GFGFV F +PE A AV E+NG+ +G K LYV AQ+K +R+ L ++ Q
Sbjct: 215 MIKDGKSRGFGFVAFENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQMELKRRFEQ 274
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
E G SKG+GFV F + E A ++ ++NG ++ K +YV +++R+ L +
Sbjct: 124 DEKGNSKGYGFVHFETEESANTSIEKVNGMLLNGKKVYVGRFIPRKEREKELGEK 178
>gi|443722844|gb|ELU11546.1| hypothetical protein CAPTEDRAFT_164502 [Capitella teleta]
Length = 629
Score = 317 bits (811), Expect = 6e-84, Method: Compositional matrix adjust.
Identities = 198/316 (62%), Positives = 227/316 (71%), Gaps = 42/316 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E GR+KGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKEDRKAHLA+QYMQR
Sbjct: 327 MTEGGRTKGFGFVCFSSPEEATKAVTEMNGRIVVAKPLYVALAQRKEDRKAHLAAQYMQR 386
Query: 61 IANMRMQQMG--QLFQPGSTGGYFVPTLPQPQR--FYGPTQMT-QIRPQPRWAAAPQMRP 115
IA MRMQ G Q+F PG TG YFVPT+ Q QR FY PTQ+ Q+R PRW A P
Sbjct: 387 IAGMRMQGQGVNQIFGPGGTG-YFVPTMAQTQRGGFYAPTQIAPQVRSTPRWQAP---NP 442
Query: 116 SGQTAQGFPNIPQ---FRSAPRASTGQTVIRGANMSARPITGQSTM-GPRGGGPMQAPGP 171
QTA G+ +P R+ PR +T Q V GAN +RPITG+ M G + P Q P
Sbjct: 443 RAQTA-GYAQLPGSGPMRN-PRPNT-QQVRAGAN--SRPITGEFRMPGAQVNRPAQ---P 494
Query: 172 ASVSAAGRQTGGYNKYP--VRN-----PG--TQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
++ A G+Q + KY VRN PG QPQAQ AV +QGQEPLT
Sbjct: 495 GAMQAGGQQRAPF-KYTQAVRNATGQVPGGAAQPQAQT-----------AVVIQGQEPLT 542
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++MLAAA PQEQKQMLGERLFPLIQ MYP+LAGKITGMLLEIDN+ELL+MLE ESLK+K
Sbjct: 543 ASMLAAAAPQEQKQMLGERLFPLIQSMYPDLAGKITGMLLEIDNSELLHMLESRESLKAK 602
Query: 283 VEEAVAVLQAHQAKQA 298
VEEAVAVLQAHQAK++
Sbjct: 603 VEEAVAVLQAHQAKES 618
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/64 (42%), Positives = 41/64 (64%), Gaps = 4/64 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY---- 57
+E+G+ +GFGFV F E A KAV E+N + + K +YV AQ+K +R+A L ++
Sbjct: 226 TEEGQKRGFGFVSFDDHEAAAKAVEELNNKEVEGKEIYVGRAQKKAERQAELKEKFERMK 285
Query: 58 MQRI 61
M+RI
Sbjct: 286 MERI 289
>gi|119113388|ref|XP_309558.3| AGAP011092-PA [Anopheles gambiae str. PEST]
gi|116131767|gb|EAA05186.3| AGAP011092-PA [Anopheles gambiae str. PEST]
Length = 634
Score = 310 bits (795), Expect = 4e-82, Method: Compositional matrix adjust.
Identities = 180/326 (55%), Positives = 213/326 (65%), Gaps = 40/326 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M ++GRSKGFGFVCFS+P+EATKAVTEMNGRI+GSKPLYVALAQRKE+RK+HLASQY+QR
Sbjct: 318 MLDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKSHLASQYIQR 377
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT- 119
+ ++RMQ +GQ++Q +G YF+PT+ QPQRFYGP Q+ +R PRW+A QMRP+
Sbjct: 378 VNSLRMQHIGQVYQ--QSGSYFMPTIAQPQRFYGP-QVAPVRTAPRWSANAQMRPNAGNQ 434
Query: 120 -------AQGFPNIPQFRSAPRASTGQTVIRGANM-----------------SARPITGQ 155
A G+P + A +RGAN +ARPITGQ
Sbjct: 435 NVAANAPAGGYPAMTAAHVANNQYRQAGNVRGANQQAPNAQSAQANSAAMRNAARPITGQ 494
Query: 156 ST---MGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQA 212
T M R P A G A +T Y PQ QP A QA
Sbjct: 495 QTAANMQTRPVAPQLAAGQA-------RTPNYKFTQSMRNPQVPQPVPIPAQPVAQ--QA 545
Query: 213 VHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYM 272
V V+GQEPLT++MLAAAQP EQKQMLGERLFPLI+ MYP LAGKITGMLLEIDN+ELL+M
Sbjct: 546 VIVKGQEPLTTSMLAAAQPAEQKQMLGERLFPLIELMYPNLAGKITGMLLEIDNSELLHM 605
Query: 273 LEHNESLKSKVEEAVAVLQAHQAKQA 298
LEH ESL +K EEAVAVLQAHQ A
Sbjct: 606 LEHKESLNAKAEEAVAVLQAHQKSSA 631
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
M++DG+S+GFGFV F PE+A +AV ++NG+ + K LYV AQ+K +R+ L ++ Q
Sbjct: 215 MTKDGKSRGFGFVAFEKPEDAEEAVQKLNGKELSDGKVLYVGRAQKKNERQMELKRRFEQ 274
Score = 44.3 bits (103), Expect = 0.078, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+SKG+GFV F + E A ++ ++NG ++ K +YV +++R+ L + +
Sbjct: 124 DEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVYVGRFISRKEREKELGEK-AKLF 182
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 183 TNVYVKNFGE 192
>gi|312378306|gb|EFR24923.1| hypothetical protein AND_10202 [Anopheles darlingi]
Length = 645
Score = 310 bits (794), Expect = 5e-82, Method: Compositional matrix adjust.
Identities = 181/326 (55%), Positives = 218/326 (66%), Gaps = 42/326 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M ++GRSKGFGFVCFS+P+EATKAVTEMNGRI+GSKPLYVALAQRKE+RK+HLASQY+QR
Sbjct: 327 MLDEGRSKGFGFVCFSAPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKSHLASQYIQR 386
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+ ++RMQ +GQ++Q +G YF+PT+ QPQRFYGP Q+ Q+R PRW+A QMRP+
Sbjct: 387 VNSLRMQHIGQVYQ--QSGSYFMPTIAQPQRFYGP-QVAQVRTAPRWSANAQMRPNAANQ 443
Query: 121 QGFPNIP----------------QFRSAPRASTGQTVIRGANM-----------SARPIT 153
N P Q+R A G SARPIT
Sbjct: 444 SVAANAPAGAYQAMSAAAHAANNQYRQAGNVRGGANQQAQNAQSAQATSAAMRNSARPIT 503
Query: 154 GQSTMGPRGGGPMQA-PGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGV 210
GQ + G MQ P ++AA + Y KY +RNP Q I Q
Sbjct: 504 GQ-----QPGANMQTRPVAPQMTAAQPRPQSY-KYTANMRNPQVPQQVPIPLQQ---VNQ 554
Query: 211 QAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELL 270
QAV V+GQEPLT++MLAAAQP EQK MLGERLFPLI+ M+P+L GKITGMLLEIDN+ELL
Sbjct: 555 QAVIVKGQEPLTASMLAAAQPAEQKNMLGERLFPLIEAMHPQLTGKITGMLLEIDNSELL 614
Query: 271 YMLEHNESLKSKVEEAVAVLQAHQAK 296
+MLEH+ESLK+KVEEAVAVLQAHQAK
Sbjct: 615 HMLEHHESLKAKVEEAVAVLQAHQAK 640
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
M +DG+S+GFGFV F +P+ A +AV E+N + + K LYV AQ+K +R+ L ++ Q
Sbjct: 224 MMKDGKSRGFGFVAFENPDAAERAVQELNAKELSDGKVLYVGRAQKKNERQMELKRRFEQ 283
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 19/70 (27%), Positives = 40/70 (57%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+SKG+GFV F + E A ++ ++NG ++ K ++V +++R+ L + +
Sbjct: 133 DEKGQSKGYGFVHFETEESANTSIEKVNGMLLNEKKVFVGRFISRKEREKELGEK-AKLF 191
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 TNVYVKNFGE 201
>gi|327285428|ref|XP_003227435.1| PREDICTED: polyadenylate-binding protein 4-like [Anolis
carolinensis]
Length = 616
Score = 306 bits (783), Expect = 1e-80, Method: Compositional matrix adjust.
Identities = 186/311 (59%), Positives = 213/311 (68%), Gaps = 24/311 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 313 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 372
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP + GGYF+P +PQ Q +Y P QMTQIRP PRW R
Sbjct: 373 IAGMRALPANAILNQFQPAA-GGYFMPAVPQAQSRPPYYAPNQMTQIRPNPRWQQGG--R 429
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQ-STMGPRGGGPMQAPGPAS 173
P G QG PN+ Q S PR + G ++R + G +G GP AP P +
Sbjct: 430 PQG--FQGMPNMRQ--SGPRPNLRHLAPAGNAQASRGLPGAPQRVGIPPTGPNLAPRPPA 485
Query: 174 VSAAGRQTGGYNKY--PVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQP 231
+ R Y KY VR+P +QP A AVHVQGQEPLT++MLAAA P
Sbjct: 486 AAQVPRAVPPY-KYASSVRSPHP-------AVQPLQAPQPAVHVQGQEPLTASMLAAAPP 537
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKVEEAVAVLQ
Sbjct: 538 QEQKQMLGERLFPLIQAMHLSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQ 597
Query: 292 AHQAKQAAVKK 302
AHQAK+ A +K
Sbjct: 598 AHQAKKEAAQK 608
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F EEA KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 215 GKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQ 269
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 118 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 176
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 177 FTNVYIKNFGD 187
>gi|19526272|gb|AAL89666.1|AF411956_7 polyA-binding protein [Takifugu rubripes]
Length = 623
Score = 303 bits (777), Expect = 5e-80, Method: Compositional matrix adjust.
Identities = 182/308 (59%), Positives = 207/308 (67%), Gaps = 29/308 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP T GYF+P +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 IAGMRAMPANTIINQFQP--TSGYFMPAVPQAQNRTTYYAPNQLAQMRPNPRWQQQG--- 440
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
QG PN + + PR + Q + S P TM PR M PGP +V
Sbjct: 441 -GRGGFQGMPNTLR-QPGPRGNMRQMTPNSS--SQGPRGSAQTMAPRPS--MGVPGPRNV 494
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
+ TG VRNP PQ +QP A AVHVQGQEPLT +MLAAA PQEQ
Sbjct: 495 TPYKYATG------VRNPN--PQV----VQPIALQQPAVHVQGQEPLTPSMLAAAPPQEQ 542
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
KQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE +ESL+SKVEEAVAVLQAHQ
Sbjct: 543 KQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVAVLQAHQ 602
Query: 295 AKQAAVKK 302
AK+ A +K
Sbjct: 603 AKKDATQK 610
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M G+S+GFGFV + E+A KAV +MNG + K ++V AQ+K +R+A L ++
Sbjct: 224 MDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKF 280
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|321466794|gb|EFX77787.1| polyadenylate binding protein, cytoplasmic 1 [Daphnia pulex]
Length = 574
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 171/294 (58%), Positives = 194/294 (65%), Gaps = 66/294 (22%)
Query: 1 MSEDGRSKG-FGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M+E GR+KG FGFVCFSSPEEATKAVTEMNGRI+ SKPLYVALAQRKEDRKA LASQYMQ
Sbjct: 328 MTEGGRNKGGFGFVCFSSPEEATKAVTEMNGRILVSKPLYVALAQRKEDRKAQLASQYMQ 387
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT 119
R+A MRMQQMGQ+FQPG GYF+P QPQRFY P QM Q R PRW+A PQ RP
Sbjct: 388 RMAGMRMQQMGQMFQPGGP-GYFMPAPIQPQRFYTPAQMAQFRATPRWSAQPQPRP---- 442
Query: 120 AQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGR 179
GF P R+ P +G P A G ++
Sbjct: 443 --GFKFTPAMRNPP--------------------------SQGSLPSNAMGGSAA----- 469
Query: 180 QTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLG 239
GG+Q QA+ VQGQEPLT++MLA+A P +QKQMLG
Sbjct: 470 ---------------------GGMQ------QALVVQGQEPLTASMLASAAPNDQKQMLG 502
Query: 240 ERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
ERLFPLIQRMYP++AGKITGMLLEIDN+ELL+MLEHNESLK+KV+EAVAVLQAH
Sbjct: 503 ERLFPLIQRMYPDMAGKITGMLLEIDNSELLHMLEHNESLKAKVDEAVAVLQAH 556
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 39/58 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
S+DG+S+GFGFVC+ P+ A +A +M+ + + K L+V AQ++ +R+ L ++ Q
Sbjct: 227 SDDGKSRGFGFVCYEDPDAAERACDDMHAKDMNGKTLFVGRAQKRNERQTELRRKFEQ 284
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/73 (31%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A A+T++NG ++ K ++V ++DR+ L + +
Sbjct: 134 DEAGNSKGYGFVHFETEESAVNAITKVNGMLLNGKKVFVGRFIPRKDRERELGEK-AKYF 192
Query: 62 ANMRMQQMGQLFQ 74
N+ ++ G F
Sbjct: 193 TNVYIKNFGDEFD 205
>gi|410898224|ref|XP_003962598.1| PREDICTED: polyadenylate-binding protein 4-like [Takifugu rubripes]
Length = 653
Score = 302 bits (773), Expect = 1e-79, Method: Compositional matrix adjust.
Identities = 182/333 (54%), Positives = 207/333 (62%), Gaps = 49/333 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP T GYF+P +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 IAGMRAMPANTIINQFQP--TSGYFMPAVPQAQNRTTYYAPNQLAQMRPNPRWQQQGGRG 443
Query: 115 ---------------PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPIT------ 153
P G Q PN PR + N++ R +
Sbjct: 444 QGGFQGMPNTLRQPGPRGNMRQMTPNSSS--QGPRGVFSNISFKSFNLTVRRLKMYILLH 501
Query: 154 --GQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAA--G 209
TM PR M PGP +V+ TG VRNP PQ +QP A
Sbjct: 502 PGSAQTMAPRPS--MGVPGPRNVTPYKYATG------VRNPN--PQV----VQPIALQQA 547
Query: 210 VQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAEL 269
AVHVQGQEPLT +MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+EL
Sbjct: 548 QPAVHVQGQEPLTPSMLAAAPPQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSEL 607
Query: 270 LYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
L+MLE +ESL+SKVEEAVAVLQAHQAK+ A +K
Sbjct: 608 LHMLESHESLRSKVEEAVAVLQAHQAKKDATQK 640
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/57 (42%), Positives = 37/57 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M G+S+GFGFV + E+A KAV +MNG + K ++V AQ+K +R+A L ++
Sbjct: 224 MDPTGKSRGFGFVSYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKNERQAELKRKF 280
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|326933139|ref|XP_003212666.1| PREDICTED: polyadenylate-binding protein 4-like [Meleagris
gallopavo]
Length = 636
Score = 301 bits (771), Expect = 2e-79, Method: Compositional matrix adjust.
Identities = 185/328 (56%), Positives = 209/328 (63%), Gaps = 57/328 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 332 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 391
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP + GGYF+P +PQ Q +Y P QM Q+RP PRW
Sbjct: 392 IAGMRALPANTIINQFQPAA-GGYFMPAVPQAQSRPTYYAPNQMAQMRPNPRWQ------ 444
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + P G P+ P S
Sbjct: 445 -QGGRPQGFQGMP---SALRQSGPRPALR-------------HLAPAGTAPVSRGLPVSA 487
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
AG T G N KY VR+P P +QP A AVH
Sbjct: 488 QRAGVTTAGQNLAPRPPVAAPAPRAVPPYKYASSVRSP--HPP-----VQPLQAPQPAVH 540
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE
Sbjct: 541 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLE 600
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKVEEAVAVLQAHQAK+ A +K
Sbjct: 601 SPESLRSKVEEAVAVLQAHQAKKEAAQK 628
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 234 GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQ 288
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 137 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 195
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 196 FTNVYIKNFGD 206
>gi|348517413|ref|XP_003446228.1| PREDICTED: polyadenylate-binding protein 4 [Oreochromis niloticus]
Length = 627
Score = 300 bits (768), Expect = 5e-79, Method: Compositional matrix adjust.
Identities = 184/312 (58%), Positives = 213/312 (68%), Gaps = 33/312 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP T GYF+P +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 IAGMRAMPANAIINQFQP--TSGYFMPAVPQAQNRTTYYAPNQLAQMRPNPRWQQQGGRS 443
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G A P+ + + PRA+ +R + S+ ST GPR GG P P SV
Sbjct: 444 QGGFQA--MPSSLR-QPGPRAN-----LRHMSPSS------STQGPRAGGQSMGPRP-SV 488
Query: 175 SAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQ--AVHVQGQEPLTSTMLAAAQ 230
+G + KY VRNP PQ +QP A AVHVQGQEPLT++MLAAA
Sbjct: 489 GVSGPRAMPPYKYATGVRNPN--PQV----VQPIALQQTQPAVHVQGQEPLTASMLAAAP 542
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE +ESL+SKVEEAVAVL
Sbjct: 543 PQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVAVL 602
Query: 291 QAHQAKQAAVKK 302
QAHQAK+ A +K
Sbjct: 603 QAHQAKKDATQK 614
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+S+GFGFV + E+A KAV EMNG + K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQ 282
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|449268618|gb|EMC79472.1| Polyadenylate-binding protein 4 [Columba livia]
Length = 630
Score = 299 bits (765), Expect = 1e-78, Method: Compositional matrix adjust.
Identities = 184/328 (56%), Positives = 208/328 (63%), Gaps = 57/328 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP + GGYF+P +PQ Q +Y P QMTQ+RP PRW R
Sbjct: 386 IAGMRALPANTIINQFQPAA-GGYFMPAVPQAQSRPTYYAPNQMTQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
P G QG PN + +S PR + + P G P PA+
Sbjct: 443 PQG--FQGMPNAMR-QSGPRPALRH------------------LAPAGSAPASRGLPAAA 481
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
G T N KY VR+P P +QP A AVH
Sbjct: 482 QRVGVGTAAQNLGPRPPVAAPAPRAVPPYKYASSVRSP--HP-----AVQPLQAPQPAVH 534
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE
Sbjct: 535 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLE 594
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKVEEAVAVLQAHQAK+ A +K
Sbjct: 595 SPESLRSKVEEAVAVLQAHQAKKEAAQK 622
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQ 282
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|149608633|ref|XP_001515603.1| PREDICTED: polyadenylate-binding protein 4 [Ornithorhynchus
anatinus]
Length = 630
Score = 298 bits (764), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 183/312 (58%), Positives = 211/312 (67%), Gaps = 25/312 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP + GGYF+P +PQ Q +Y P QM Q+RP PRW A ++
Sbjct: 386 IAGMRALPANTIINQFQPAA-GGYFMPAVPQAQSRPTYYAPNQMAQMRPNPRWQQAGRL- 443
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSAR--PITGQSTMGPRGGGPMQAPGPA 172
Q QG PN + +S PR + G ++R P Q P + AP
Sbjct: 444 ---QGFQGMPNAMR-QSGPRPALRHLTPAGNAQASRGLPAAPQRVGVPPAAQNL-APRAP 498
Query: 173 SVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
+A R Y KY VR+P IQP A AVHVQGQEPLT++MLAAA
Sbjct: 499 VAAATPRAVPPY-KYASNVRSPHP-------AIQPLQAPQPAVHVQGQEPLTASMLAAAP 550
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKVEEAVAVL
Sbjct: 551 PQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVL 610
Query: 291 QAHQAKQAAVKK 302
QAHQAK+ A +K
Sbjct: 611 QAHQAKKEAAQK 622
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F E+A +AV +MNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSFEKHEDANQAVEDMNGKDINGKMVFVGRAQKKVERQAELKRKFEQ 282
Score = 42.7 bits (99), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|41152034|ref|NP_958453.1| polyadenylate-binding protein 4 [Danio rerio]
gi|31419252|gb|AAH53126.1| Poly(A) binding protein, cytoplasmic 4 (inducible form) [Danio
rerio]
Length = 637
Score = 298 bits (763), Expect = 2e-78, Method: Compositional matrix adjust.
Identities = 182/311 (58%), Positives = 209/311 (67%), Gaps = 21/311 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 327 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 386
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP GGYF+P +PQ Q +Y P Q+TQ+RP PRW
Sbjct: 387 IAGMRAMPANAIINQFQPA--GGYFMPAVPQAQNRTTYYAPNQLTQMRPNPRWQQQGGR- 443
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPI-TGQSTMGPRGGGPMQAPGPAS 173
QG P+ + + PRA+ +N R + TG +G G G P PA
Sbjct: 444 -GQGGFQGMPSSLR-QPGPRANIRHLAPNASNQGPRGMPTGAQRVG--GTGQPMGPRPAM 499
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAA--GVQAVHVQGQEPLTSTMLAAAQP 231
R Y KY TQPQ +QP A AVHVQGQEPLT++MLAAA P
Sbjct: 500 GMTTPRAMPPY-KYASTIRNTQPQV----VQPIALQQAQPAVHVQGQEPLTASMLAAAPP 554
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE +ESL+SKVEEAVAVLQ
Sbjct: 555 QEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVAVLQ 614
Query: 292 AHQAKQAAVKK 302
AHQAK+ A +K
Sbjct: 615 AHQAKKDATQK 625
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+S+GFGFV + E+A KAV EMNG + K ++V AQ+K +R+A L ++ Q
Sbjct: 229 GKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQ 283
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 24/96 (25%), Positives = 52/96 (54%), Gaps = 9/96 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ---- 56
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A + ++
Sbjct: 132 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAKAKEF 191
Query: 57 ---YMQRIA-NMRMQQMGQLFQP-GSTGGYFVPTLP 87
Y++ +M Q++ +LF G T V T P
Sbjct: 192 TNVYIKNFGDDMDDQRLKELFDKYGKTLSVKVMTDP 227
>gi|432937502|ref|XP_004082431.1| PREDICTED: polyadenylate-binding protein 4-like [Oryzias latipes]
Length = 629
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 182/312 (58%), Positives = 207/312 (66%), Gaps = 33/312 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRM---QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP T GYF+P +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 IAGMRAMPPNAIINQFQP--TSGYFMPAVPQAQNRTTYYAPNQLAQMRPNPRWQQQGGRG 443
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G +P +S Q RG P G + GPR G AP P S+
Sbjct: 444 QGGFQG-----MP-------SSLRQPGPRGNMRHMSPSGG--SQGPRASGQSMAPRP-SM 488
Query: 175 SAAGRQTGGYNKY--PVRNPGTQPQAQIGGIQPAAA--GVQAVHVQGQEPLTSTMLAAAQ 230
G +T KY VRNP PQ +QP A AVH+QGQEPLT++MLAAA
Sbjct: 489 GVPGPRTMSPYKYATSVRNPN--PQV----VQPIALQQAQPAVHIQGQEPLTASMLAAAP 542
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE +ESL+SKVEEAVAVL
Sbjct: 543 PQEQKQMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLQSKVEEAVAVL 602
Query: 291 QAHQAKQAAVKK 302
QAHQAK+ A +K
Sbjct: 603 QAHQAKKDATQK 614
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G+S+GFGFV F E+A KAV E+NG + K ++V AQ+K +R+A L ++
Sbjct: 228 GKSRGFGFVSFEKHEDANKAVEEINGTELNGKTVFVGRAQKKMERQAELKRKF 280
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 48/82 (58%), Gaps = 8/82 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ---- 56
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAKAKEF 190
Query: 57 ---YMQRIAN-MRMQQMGQLFQ 74
Y++ + M +Q+ ++F+
Sbjct: 191 TNVYIKNFGDEMEDEQLKEMFE 212
>gi|118101731|ref|XP_417821.2| PREDICTED: polyadenylate-binding protein 4 [Gallus gallus]
Length = 630
Score = 297 bits (760), Expect = 4e-78, Method: Compositional matrix adjust.
Identities = 180/310 (58%), Positives = 208/310 (67%), Gaps = 21/310 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP + GGYF+P +PQ Q +Y P QM Q+RP PRW R
Sbjct: 386 IAGMRALPANTIINQFQPAA-GGYFMPAVPQAQSRPTYYAPNQMAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSAR--PITGQSTMGPRGGGPMQAPGPA 172
P G QG PN + +S PR + G ++R P++ Q G + P
Sbjct: 443 PQG--FQGMPNAMR-QSGPRPALRHLAPAGTAPASRGLPVSAQRVGVTTAGQSLAPRPPV 499
Query: 173 SVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQ 232
+ A VR+P P +QP A AVHVQGQEPLT++MLAAA PQ
Sbjct: 500 AAPAPRAVPPYKYASSVRSP--HPP-----VQPLQAPQPAVHVQGQEPLTASMLAAAPPQ 552
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
EQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKVEEAVAVLQA
Sbjct: 553 EQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA 612
Query: 293 HQAKQAAVKK 302
HQAK+ A +K
Sbjct: 613 HQAKKEAAQK 622
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQ 282
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|260815191|ref|XP_002602357.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
gi|229287666|gb|EEN58369.1| hypothetical protein BRAFLDRAFT_234358 [Branchiostoma floridae]
Length = 620
Score = 294 bits (753), Expect = 3e-77, Method: Compositional matrix adjust.
Identities = 183/311 (58%), Positives = 208/311 (66%), Gaps = 34/311 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E+GRSKGFGFVCFSSPEEATKAVTEMNGRI+ SKPLYVALAQRKEDRKA LASQYMQR
Sbjct: 329 MTENGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEDRKAQLASQYMQR 388
Query: 61 IANMRMQ--QMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQ 118
+A MRM Q Q+FQ S YF+P++ QP+ F P+QM Q+R PRW A MRP GQ
Sbjct: 389 MAGMRMPAPQPNQMFQGSS---YFMPSM-QPRYF--PSQMAQVRASPRWQQAAPMRPGGQ 442
Query: 119 TAQGFPNIP----QFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
A F +P +F +A +R A T Q P +
Sbjct: 443 -ATAFQAMPAAGSRFPAATAPRAAAAAVRQVAPQAMARTTQ---------------PPAQ 486
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQI----GGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
AGR N+ P PG + A + G QP A AVHVQGQEPLTSTMLAAA
Sbjct: 487 RMAGRVAAMANQQP--RPGYKYTATMRNPPSGGQPQAMNPSAVHVQGQEPLTSTMLAAAP 544
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
PQEQKQMLGERLFPLIQ +P+LAGKITGMLLEIDNAELL+MLE ESLK+KVEEAVAVL
Sbjct: 545 PQEQKQMLGERLFPLIQNSHPDLAGKITGMLLEIDNAELLHMLESRESLKAKVEEAVAVL 604
Query: 291 QAHQAKQAAVK 301
QAHQAK+ A +
Sbjct: 605 QAHQAKEQAAR 615
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 45/70 (64%), Gaps = 3/70 (4%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNG-RIIGSKPLYVALAQRKEDRKAHLASQYM 58
M++D G S+GFGFV + P+ A KA EMN + + +YV AQ+K +R+A L +++
Sbjct: 225 MTDDMGHSRGFGFVSYEEPDSAGKACEEMNDMEVDDGRRIYVGRAQKKAERQAELKAKF- 283
Query: 59 QRIANMRMQQ 68
++I R+Q+
Sbjct: 284 EKIKQERIQR 293
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 1/81 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFV F + E A +A+ ++NG ++ K +YV + +R A + + +R
Sbjct: 134 DETGSSKGFGFVHFETQEAADEAMAKVNGMMLNGKKVYVGRFVPRSERLAAMG-EAQKRF 192
Query: 62 ANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G + +F
Sbjct: 193 TNIYVKNFGDKWDDDKLRDFF 213
>gi|224081795|ref|XP_002196994.1| PREDICTED: polyadenylate-binding protein 4 [Taeniopygia guttata]
Length = 629
Score = 292 bits (748), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 185/332 (55%), Positives = 208/332 (62%), Gaps = 66/332 (19%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP + GGYF+P +PQ Q +Y P QMTQ+RP PRW R
Sbjct: 386 IAGMRALPANTIINQFQPAA-GGYFMPAVPQAQSRPTYYAPNQMTQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG---- 170
P G QG PN + +S PR + R P AP
Sbjct: 443 PQG--FQGMPNAMR-QSGPRPAL-----------------------RHLSPANAPASRGL 476
Query: 171 PASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGV 210
PA+ G T N KY VR+P P G+QP A
Sbjct: 477 PAAAQRVGVGTAAQNLAPRPPVAAPAPRAVPPYKYASSVRSP--HP-----GVQPLQAPQ 529
Query: 211 QAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELL 270
AV VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL
Sbjct: 530 PAVLVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELL 589
Query: 271 YMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
+MLE ESL+SKVEEAVAVLQAHQAK+ A +K
Sbjct: 590 HMLESPESLRSKVEEAVAVLQAHQAKKEAAQK 621
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F EEA KAV EMNG+ I K L+V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSFEKHEEANKAVEEMNGKDINGKMLFVGRAQKKAERQAELKRRFEQ 282
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|241831489|ref|XP_002414860.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
gi|215509072|gb|EEC18525.1| apoptosis-promoting RNA-binding protein TIA-1/TIAR, putative
[Ixodes scapularis]
Length = 686
Score = 292 bits (747), Expect = 1e-76, Method: Compositional matrix adjust.
Identities = 193/357 (54%), Positives = 219/357 (61%), Gaps = 68/357 (19%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+GRSKGFGFVCFSSPEEATKAVTEMNGRI+ SKPLYVALAQRKEDRKAHLASQYM RIA
Sbjct: 331 NGRSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEDRKAHLASQYMHRIAG 390
Query: 64 MRMQQMGQLFQPGSTG--GYFVPTLPQPQ---RFYGPTQM--TQIRPQPRWAAA-PQMRP 115
MRMQ MGQ+F PG TG YFVPT+P Q R Y P + Q+R PRW PQ+R
Sbjct: 391 MRMQ-MGQMFPPGGTGVANYFVPTMPHHQTGQRSYFPAALGPAQMRATPRWTGQQPQLRG 449
Query: 116 SGQTAQG---------FPNIPQFRSAPRASTGQTVIRGANMSARPITGQS---------- 156
+G G FP ++ PR S RG+ +ARPITG
Sbjct: 450 AGPQGAGAGAQPQGAGFPTAMPYQRQPRPSLAAQPQRGSLGAARPITGGQQAPPQQQQGA 509
Query: 157 ---------TMGPRGGGPMQAPGPASVSAAG-RQTGGYNKYPVRNP-------------- 192
MGPR G AS +AAG R T Y + +RNP
Sbjct: 510 GGPQQAPPRVMGPR------PTGMASQAAAGPRPTYKYTQ-AMRNPPQVTAVSAPVAAPF 562
Query: 193 ---------GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLF 243
Q A Q A+ AVH+QGQEPLT++MLA A P +QKQMLGERLF
Sbjct: 563 QVAAQQQQQQHQVAAAQAAAQQQASQQAAVHIQGQEPLTASMLAEATPHDQKQMLGERLF 622
Query: 244 PLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAV 300
PLI RMYP+LAGKITGMLLEIDN+ELL+MLEH+ESLK+KVEEAVAVLQAHQAK+ V
Sbjct: 623 PLIHRMYPDLAGKITGMLLEIDNSELLHMLEHHESLKAKVEEAVAVLQAHQAKETVV 679
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M++D G+++GFGFV F P+ A +AV E+NG+ +G +PLYV AQ+K +R++ L + Q
Sbjct: 224 MTDDSGKNRGFGFVSFEEPDSAERAVEELNGKDMGGRPLYVGRAQKKAERQSELKRHFEQ 283
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 32/50 (64%), Gaps = 1/50 (2%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA-LAQRKEDRK 50
E+ SKG+GFV F + E A KA++++NG ++ +K +YV RKE K
Sbjct: 133 DEEAASKGYGFVHFETEEAANKAISKVNGMLLNNKKVYVGKFIPRKEREK 182
>gi|395526571|ref|XP_003765434.1| PREDICTED: polyadenylate-binding protein 4 [Sarcophilus harrisii]
Length = 630
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 179/309 (57%), Positives = 206/309 (66%), Gaps = 29/309 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSP+EATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP + GGYF+P +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 386 IAGMRALPANTIINQFQP-TPGGYFMPAVPQAQNRPPYYAPNQIAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ----APG 170
P G QG PN + +S PR + ++R G T R G P +P
Sbjct: 443 PQG--FQGVPNAIR-QSGPRPTLRHLTPASNTQASR---GLPTTPQRVGVPTAVQNLSPR 496
Query: 171 PASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
P+ + A R Y KY VR+P IQP AVHVQGQEPLT++MLAA
Sbjct: 497 PSVATPAPRAVPPY-KYAANVRSPHP-------AIQPLQTPQPAVHVQGQEPLTASMLAA 548
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKVEEAVA
Sbjct: 549 APPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVA 608
Query: 289 VLQAHQAKQ 297
VLQAH AK+
Sbjct: 609 VLQAHHAKK 617
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQ 282
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|426215228|ref|XP_004001876.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Ovis aries]
Length = 644
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 181/328 (55%), Positives = 206/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ QIRP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQIRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T N KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|426215230|ref|XP_004001877.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Ovis aries]
Length = 631
Score = 291 bits (746), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 180/328 (54%), Positives = 204/328 (62%), Gaps = 57/328 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ QIRP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQIRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + P G P P +
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPALR-------------HLAPTGNAPASRGLPTTA 481
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
G T N KY VR+P P IQP A AVH
Sbjct: 482 QRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 534
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 535 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 594
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 595 SPESLRSKVDEAVAVLQAHHAKKEAAQK 622
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|126330205|ref|XP_001365269.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Monodelphis
domestica]
Length = 630
Score = 291 bits (745), Expect = 2e-76, Method: Compositional matrix adjust.
Identities = 179/309 (57%), Positives = 206/309 (66%), Gaps = 29/309 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSP+EATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP + GGYF+P +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 386 IAGMRALPANTIINQFQP-TPGGYFMPAVPQAQNRPPYYAPNQIAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ----APG 170
P G QG PN + +S PR + ++R G T R G P +P
Sbjct: 443 PQG--FQGVPNTIR-QSGPRPALRHLTPASNTQASR---GLPTTPQRVGVPTAVQNLSPR 496
Query: 171 PASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
P+ + A R Y KY VR+P IQP AVHVQGQEPLT++MLAA
Sbjct: 497 PSVATPAPRAVPPY-KYAANVRSPHP-------AIQPLQTPQPAVHVQGQEPLTASMLAA 548
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKVEEAVA
Sbjct: 549 APPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVA 608
Query: 289 VLQAHQAKQ 297
VLQAH AK+
Sbjct: 609 VLQAHHAKK 617
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQ 282
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G G F
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELF 211
>gi|395853072|ref|XP_003799044.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Otolemur
garnettii]
Length = 633
Score = 291 bits (745), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 177/314 (56%), Positives = 206/314 (65%), Gaps = 27/314 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQSTMGPRGGGPMQAPG 170
G QGF +P +S PR + G ++R P T Q P +
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGVPTAVQNLAPRA 497
Query: 171 PASVSAAGRQTGGYNKY--PVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
+ + A + KY VR+P P IQP A AVHVQGQEPLT++MLAA
Sbjct: 498 AVAAATAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVHVQGQEPLTASMLAA 550
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVA
Sbjct: 551 APPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVA 610
Query: 289 VLQAHQAKQAAVKK 302
VLQAH AK+ A +K
Sbjct: 611 VLQAHHAKKEAAQK 624
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKELF 211
>gi|348553000|ref|XP_003462315.1| PREDICTED: polyadenylate-binding protein 4-like isoform 4 [Cavia
porcellus]
Length = 631
Score = 291 bits (744), Expect = 3e-76, Method: Compositional matrix adjust.
Identities = 182/315 (57%), Positives = 210/315 (66%), Gaps = 31/315 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG-- 170
G QGF +P +S PR + G ++R G T R G P P
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASR---GLPTTTQRVGVPTAVPNLA 494
Query: 171 -PASVSAAGRQTGGYNKY--PVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
A+V+AA + KY VR+P P IQP A AVHVQGQEPLT++MLA
Sbjct: 495 PRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVHVQGQEPLTASMLA 547
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
AA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAV
Sbjct: 548 AAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAV 607
Query: 288 AVLQAHQAKQAAVKK 302
AVLQAH AK+ A +K
Sbjct: 608 AVLQAHHAKKEAAQK 622
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|41388837|gb|AAH65540.1| PABPC4 protein [Homo sapiens]
Length = 631
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 179/328 (54%), Positives = 204/328 (62%), Gaps = 57/328 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + P G P P +
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLR-------------HLAPTGNAPASRGLPTTT 481
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
G T N KY VR+P P IQP A AVH
Sbjct: 482 QRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 534
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 535 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 594
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 595 SPESLRSKVDEAVAVLQAHHAKKEAAQK 622
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKELF 211
>gi|126320658|ref|XP_001364500.1| PREDICTED: polyadenylate-binding protein 4-like [Monodelphis
domestica]
Length = 630
Score = 290 bits (743), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 181/312 (58%), Positives = 204/312 (65%), Gaps = 35/312 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSP+EATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP + GGYF+P +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 386 IAGMRALPANTIINQFQP-TPGGYFMPAVPQAQNRPPYYAPNQIAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPN-------IPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ 167
P G QG PN P R AS Q RG P T Q P +
Sbjct: 443 PQG--FQGVPNTIRQSGPCPALRHLTPASNTQAS-RGL-----PTTPQRVGVPTAVQNL- 493
Query: 168 APGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
+P P+ + A R Y KY VR+P IQP AVHVQGQEPLT++M
Sbjct: 494 SPRPSVATPAPRAVPPY-KYAANVRSPHP-------AIQPLQTPQPAVHVQGQEPLTASM 545
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKVEE
Sbjct: 546 LAAAPPQEQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSELLHMLESPESLRSKVEE 605
Query: 286 AVAVLQAHQAKQ 297
AVAVLQAH AK+
Sbjct: 606 AVAVLQAHHAKK 617
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQ 282
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G G F
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELF 211
>gi|332248417|ref|XP_003273360.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Nomascus
leucogenys]
gi|383411099|gb|AFH28763.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
gi|384941234|gb|AFI34222.1| polyadenylate-binding protein 4 isoform 3 [Macaca mulatta]
Length = 631
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 179/328 (54%), Positives = 204/328 (62%), Gaps = 57/328 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + P G P P +
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLR-------------HLAPTGNAPASRGLPTTT 481
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
G T N KY VR+P P IQP A AVH
Sbjct: 482 QRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 534
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 535 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 594
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 595 SPESLRSKVDEAVAVLQAHHAKKEAAQK 622
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKELF 211
>gi|301624826|ref|XP_002941699.1| PREDICTED: polyadenylate-binding protein 4-like [Xenopus (Silurana)
tropicalis]
Length = 632
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 181/315 (57%), Positives = 206/315 (65%), Gaps = 35/315 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 332 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 391
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR L FQP + GGYFVP +PQ Q +Y P M QIRP PRW R
Sbjct: 392 IAGMRALPANTLINQFQP-APGGYFVPAVPQTQSRPTYYAPNHMAQIRPGPRWQQTG--R 448
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGG-GPMQAPGPAS 173
P G Q PN + +S PR S R + +T G RG Q G +S
Sbjct: 449 PQG--FQPMPNTLR-QSGPR------------QSLRHMPPSNTQGTRGIPSVTQRVGVSS 493
Query: 174 VSAAGRQTGGYNKYPVRN------PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
+ QT G P + + G+QP AVHVQGQEPLT++MLA
Sbjct: 494 ST----QTMGPRPPVSAPPPRAVPPYKYTRCPLPGVQPLQTPQPAVHVQGQEPLTASMLA 549
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKVEEAV
Sbjct: 550 SAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAV 609
Query: 288 AVLQAHQAKQAAVKK 302
AVLQAHQAK+ A +K
Sbjct: 610 AVLQAHQAKKDAAQK 624
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F E+A KAV +MNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 234 GKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQ 288
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + + +R+A L ++ +
Sbjct: 137 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAK-AKE 195
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 196 FTNVYIKNFGE 206
>gi|410966844|ref|XP_003989937.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Felis catus]
Length = 631
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 175/312 (56%), Positives = 203/312 (65%), Gaps = 25/312 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQSTMGPRGGGPMQAPG 170
G QGF +P +S PR + G ++R P T Q P +
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGVPTAVQTLAPRA 497
Query: 171 PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
+ +A VR+P P IQP A AVHVQGQEPLT++MLAAA
Sbjct: 498 AVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVHVQGQEPLTASMLAAAP 550
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAVL
Sbjct: 551 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 610
Query: 291 QAHQAKQAAVKK 302
QAH AK+ A +K
Sbjct: 611 QAHHAKKEAAQK 622
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKELF 211
>gi|4504715|ref|NP_003810.1| polyadenylate-binding protein 4 isoform 2 [Homo sapiens]
gi|332808510|ref|XP_003308042.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730716|ref|XP_003775777.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pongo abelii]
gi|397488844|ref|XP_003815453.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Pan paniscus]
gi|426329066|ref|XP_004025565.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Gorilla
gorilla gorilla]
gi|12229875|sp|Q13310.1|PABP4_HUMAN RecName: Full=Polyadenylate-binding protein 4; Short=PABP-4;
Short=Poly(A)-binding protein 4; AltName:
Full=Activated-platelet protein 1; Short=APP-1; AltName:
Full=Inducible poly(A)-binding protein; Short=iPABP
gi|1163177|gb|AAC50350.1| inducible poly(A)-binding protein [Homo sapiens]
gi|2801403|gb|AAB97309.1| polyadenylate binding protein [Homo sapiens]
gi|119627669|gb|EAX07264.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_d [Homo sapiens]
gi|410227600|gb|JAA11019.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|1585757|prf||2201474A inducible poly(A)-binding protein
Length = 644
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 180/328 (54%), Positives = 206/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T N KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|332248415|ref|XP_003273359.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Nomascus
leucogenys]
gi|383411101|gb|AFH28764.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
gi|384941236|gb|AFI34223.1| polyadenylate-binding protein 4 isoform 2 [Macaca mulatta]
Length = 644
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 180/328 (54%), Positives = 206/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T N KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|126330207|ref|XP_001365338.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Monodelphis
domestica]
Length = 614
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 177/305 (58%), Positives = 202/305 (66%), Gaps = 37/305 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSP+EATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPDEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP + GGYF+P +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 386 IAGMRALPANTIINQFQP-TPGGYFMPAVPQAQNRPPYYAPNQIAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
P G QG PN + +S PR + AR T + PR P+
Sbjct: 443 PQG--FQGVPNTIR-QSGPRPALRHLT------PARVPTAVQNLSPR---------PSVA 484
Query: 175 SAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQ 232
+ A R Y KY VR+P IQP AVHVQGQEPLT++MLAAA PQ
Sbjct: 485 TPAPRAVPPY-KYAANVRSPHP-------AIQPLQTPQPAVHVQGQEPLTASMLAAAPPQ 536
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
EQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKVEEAVAVLQA
Sbjct: 537 EQKQMLGERLFPLIQTMHNNLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAVAVLQA 596
Query: 293 HQAKQ 297
H AK+
Sbjct: 597 HHAKK 601
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRKFEQ 282
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 19/82 (23%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G G F
Sbjct: 190 FTNVYIKNFGDDMDDGRLKELF 211
>gi|402854031|ref|XP_003891684.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Papio anubis]
Length = 631
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 179/328 (54%), Positives = 204/328 (62%), Gaps = 57/328 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + P G P P +
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPALR-------------HLAPTGNAPASRGLPTTT 481
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
G T N KY VR+P P IQP A AVH
Sbjct: 482 QRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 534
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 535 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 594
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 595 SPESLRSKVDEAVAVLQAHHAKKEAAQK 622
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKELF 211
>gi|208431836|ref|NP_001129126.1| polyadenylate-binding protein 4 isoform 3 [Homo sapiens]
gi|332808512|ref|XP_003308043.1| PREDICTED: polyadenylate-binding protein 4 [Pan troglodytes]
gi|395730718|ref|XP_003775778.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pongo abelii]
gi|426329064|ref|XP_004025564.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Gorilla
gorilla gorilla]
gi|119627671|gb|EAX07266.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_f [Homo sapiens]
gi|410227602|gb|JAA11020.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 290 bits (742), Expect = 5e-76, Method: Compositional matrix adjust.
Identities = 179/328 (54%), Positives = 204/328 (62%), Gaps = 57/328 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + P G P P +
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLR-------------HLAPTGNAPASRGLPTTT 481
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
G T N KY VR+P P IQP A AVH
Sbjct: 482 QRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 534
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 535 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 594
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 595 SPESLRSKVDEAVAVLQAHHAKKEAAQK 622
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKELF 211
>gi|149693775|ref|XP_001503500.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Equus
caballus]
Length = 644
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 180/328 (54%), Positives = 206/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T N KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|338721952|ref|XP_003364452.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Equus
caballus]
Length = 631
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 179/328 (54%), Positives = 204/328 (62%), Gaps = 57/328 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + P G P P +
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLR-------------HLAPTGNAPASRGLPTTA 481
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
G T N KY VR+P P IQP A AVH
Sbjct: 482 QRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 534
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 535 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 594
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 595 SPESLRSKVDEAVAVLQAHHAKKEAAQK 622
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKELF 211
>gi|335291035|ref|XP_003127861.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Sus scrofa]
Length = 644
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 180/328 (54%), Positives = 206/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T N KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVQNLAPRAAVATAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|402854029|ref|XP_003891683.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Papio anubis]
Length = 644
Score = 290 bits (742), Expect = 6e-76, Method: Compositional matrix adjust.
Identities = 180/328 (54%), Positives = 206/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T N KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|395853070|ref|XP_003799043.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Otolemur
garnettii]
Length = 646
Score = 289 bits (740), Expect = 9e-76, Method: Compositional matrix adjust.
Identities = 180/330 (54%), Positives = 206/330 (62%), Gaps = 46/330 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN--------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQA 212
+ G T N KY VR+P P IQP A A
Sbjct: 495 QSGGVPTAVQNLAPRAAVAAATAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPA 547
Query: 213 VHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYM 272
VHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+M
Sbjct: 548 VHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHM 607
Query: 273 LEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 LESPESLRSKVDEAVAVLQAHHAKKEAAQK 637
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|348552996|ref|XP_003462313.1| PREDICTED: polyadenylate-binding protein 4-like isoform 2 [Cavia
porcellus]
Length = 644
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 180/328 (54%), Positives = 206/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T N KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|139948570|ref|NP_001077193.1| polyadenylate-binding protein 4 [Bos taurus]
gi|134024563|gb|AAI34510.1| PABPC4 protein [Bos taurus]
gi|296488909|tpg|DAA31022.1| TPA: poly A binding protein, cytoplasmic 4 [Bos taurus]
Length = 645
Score = 289 bits (740), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 179/329 (54%), Positives = 206/329 (62%), Gaps = 45/329 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN-------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAV 213
+ G T N KY +R+P P IQP A AV
Sbjct: 495 QSGGVPTAVQNLAPRAAVAAAAAPRAVAPYKYASSIRSP--HP-----AIQPLQAPQPAV 547
Query: 214 HVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYML 273
HVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+ML
Sbjct: 548 HVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 607
Query: 274 EHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
E ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 ESPESLRSKVDEAVAVLQAHHAKKEAAQK 636
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|148229527|ref|NP_001085857.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Xenopus
laevis]
gi|49118872|gb|AAH73435.1| MGC80927 protein [Xenopus laevis]
Length = 626
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 181/315 (57%), Positives = 205/315 (65%), Gaps = 35/315 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR L FQP + GGYFVP +PQ Q +Y P M QIRP PRW R
Sbjct: 386 IAGMRALPANTLINQFQP-APGGYFVPAVPQTQSRPTYYAPNHMAQIRPGPRWQQTG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGG-GPMQAPGPAS 173
P G Q PN + S PR S R + + G RG G Q G +S
Sbjct: 443 PQG--FQPMPNTLR-HSGPRQSL------------RHMPPSNAQGTRGIPGVTQRVGVSS 487
Query: 174 VSAAGRQTGGYNKYPVRN------PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
+ QT G P + + +QP A AVHVQGQEPLT++MLA
Sbjct: 488 ST----QTMGPRPPVSAPPPRAVPPYKYTRCPLPVVQPLQAPQPAVHVQGQEPLTASMLA 543
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKVEEAV
Sbjct: 544 SAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEEAV 603
Query: 288 AVLQAHQAKQAAVKK 302
AVLQAHQAK+ A +K
Sbjct: 604 AVLQAHQAKKDAAQK 618
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F E+A KAV +MNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSFERHEDANKAVDDMNGKDVNGKIMFVGRAQKKVERQAELKRRFEQ 282
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + + +R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKCRREREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|291399204|ref|XP_002715240.1| PREDICTED: poly A binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 644
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 179/328 (54%), Positives = 206/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R + + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQAGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T N KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 39/55 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ IG K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEIGGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKDLF 211
>gi|344287655|ref|XP_003415568.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Loxodonta
africana]
Length = 631
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 174/312 (55%), Positives = 203/312 (65%), Gaps = 25/312 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQSTMGPRGGGPMQAPG 170
G QGF +P +S PR + G ++R P T Q P +
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGVPTAVQSLAPRA 497
Query: 171 PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
+ +A VR+P P +QP A AVHVQGQEPLT++MLAAA
Sbjct: 498 AVAAAAPRAVAPYKYASSVRSP--HP-----AMQPLQAPQPAVHVQGQEPLTASMLAAAP 550
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAVL
Sbjct: 551 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVL 610
Query: 291 QAHQAKQAAVKK 302
QAH AK+ A +K
Sbjct: 611 QAHHAKKEAAQK 622
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKELF 211
>gi|198386356|ref|NP_001094008.1| polyadenylate-binding protein 4 [Rattus norvegicus]
gi|183985833|gb|AAI66452.1| Pabpc4 protein [Rattus norvegicus]
Length = 644
Score = 289 bits (739), Expect = 1e-75, Method: Compositional matrix adjust.
Identities = 180/328 (54%), Positives = 206/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SALRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN------------------KYP--VRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T N KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVPNLAPRATVAAAAPRAVAPYKYASNVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|426215226|ref|XP_004001875.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Ovis aries]
Length = 660
Score = 288 bits (738), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 184/341 (53%), Positives = 209/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ QIRP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQIRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|387017716|gb|AFJ50976.1| Polyadenylate-binding protein 1-like [Crotalus adamanteus]
Length = 636
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 175/316 (55%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y +Q+TQ+RP PRWAA
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTSQITQLRPSPRWAA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPR--------ASTGQTVIRGANMSARPITGQSTMGPRGGGP 165
G F N+P R +APR AS+ T + A T TMGPR
Sbjct: 440 QGARPHPFQNMPGAIRPTAPRPPFSTMRPASSQVTRVMSTQRVAN--TSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + + P ++ TQPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVSQYKYAAGVRNPQQHLNTQPQVAMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|119627670|gb|EAX07265.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_e [Homo sapiens]
Length = 615
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 174/308 (56%), Positives = 199/308 (64%), Gaps = 33/308 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + P Q+ A
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLRHLAPTGVPTAVQNLAPRAAVAAAAPRAVAPY 494
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
A VR+P P IQP A AVHVQGQEPLT++MLAAA PQEQ
Sbjct: 495 KYAS---------SVRSP--HP-----AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQ 538
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
KQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAVLQAH
Sbjct: 539 KQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHH 598
Query: 295 AKQAAVKK 302
AK+ A +K
Sbjct: 599 AKKEAAQK 606
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKELF 211
>gi|410966842|ref|XP_003989936.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Felis catus]
Length = 644
Score = 288 bits (736), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 179/328 (54%), Positives = 205/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTG------------------GYNKY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|149023879|gb|EDL80376.1| rCG31475, isoform CRA_b [Rattus norvegicus]
Length = 656
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 184/342 (53%), Positives = 210/342 (61%), Gaps = 54/342 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KYP--VRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRAVAPYKYASNVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKKE 303
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +KE
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKE 652
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|410263250|gb|JAA19591.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 644
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 180/328 (54%), Positives = 205/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 EAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T N KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKELF 211
>gi|403292062|ref|XP_003937076.1| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Saimiri
boliviensis boliviensis]
Length = 630
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 178/328 (54%), Positives = 203/328 (61%), Gaps = 58/328 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + P G P P +
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPALR-------------HLAPTGNAPASRGLPTTT 481
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
G T N KY VR+P P Q QPA VH
Sbjct: 482 QRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HPAIQPLQAQPA------VH 533
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 534 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 593
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 594 SPESLRSKVDEAVAVLQAHHAKKEAAQK 621
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKELF 211
>gi|410263252|gb|JAA19592.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 631
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 179/328 (54%), Positives = 203/328 (61%), Gaps = 57/328 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 EAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + P G P P +
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLR-------------HLAPTGNAPASRGLPTTT 481
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
G T N KY VR+P P IQP A AVH
Sbjct: 482 QRVGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 534
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 535 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 594
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 595 SPESLRSKVDEAVAVLQAHHAKKEAAQK 622
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKELF 211
>gi|403292060|ref|XP_003937075.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Saimiri
boliviensis boliviensis]
Length = 643
Score = 287 bits (735), Expect = 3e-75, Method: Compositional matrix adjust.
Identities = 179/328 (54%), Positives = 205/328 (62%), Gaps = 45/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T N KY VR+P P Q QPA VH
Sbjct: 495 QSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HPAIQPLQAQPA------VH 546
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 547 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 606
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 607 SPESLRSKVDEAVAVLQAHHAKKEAAQK 634
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|48734702|gb|AAH71591.1| PABPC4 protein [Homo sapiens]
Length = 660
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 181/339 (53%), Positives = 206/339 (60%), Gaps = 50/339 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KYPVRNPGTQPQAQIGGI 203
G G Q S + G T N KY G P I
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRGPHP-----AI 552
Query: 204 QPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLE 263
QP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLE
Sbjct: 553 QPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLE 612
Query: 264 IDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
IDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 613 IDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|2665654|gb|AAB88449.1| polyadenylate binding protein [Petromyzon marinus]
Length = 630
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 181/306 (59%), Positives = 209/306 (68%), Gaps = 29/306 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRS+GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE+RK HL SQ+MQR
Sbjct: 327 MMEEGRSRGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEERKMHLTSQFMQR 386
Query: 61 IANMRM----QQMGQLFQPGSTGGYFVPTLPQPQR----FYGPTQMTQIRPQPRWAAAPQ 112
+A MR +GQ +QP + GYF+ +PQ + +Y P+ M +RP PRW Q
Sbjct: 387 LAGMRAVPPSAIIGQ-YQPAAASGYFMAAMPQQAQGRTAYYTPSPMAPMRPNPRWPL--Q 443
Query: 113 MRPSGQTAQGFPNI--PQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
+RP G A GF I P + APR + +TV A++ P Q M PR P QA G
Sbjct: 444 VRPQGAHAAGFQAITGPMRQPAPRPTQMRTV-NPASVPQVPRASQGMM-PRPTFPTQAAG 501
Query: 171 PASVSAAGRQTGGYNKY--PVRNPGTQPQAQ-IGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
P R GY KY VRNP QP Q G +Q A AVH+QGQEPLT++MLA
Sbjct: 502 P-------RALPGY-KYTGSVRNP-QQPGVQGPGAMQQAPQS--AVHIQGQEPLTASMLA 550
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
AA P EQKQMLGERLFPLI MYP LAGKITGMLLEIDN+ELL+MLE ESL++KVEEAV
Sbjct: 551 AAPPHEQKQMLGERLFPLIHGMYPTLAGKITGMLLEIDNSELLHMLESPESLRAKVEEAV 610
Query: 288 AVLQAH 293
AVLQAH
Sbjct: 611 AVLQAH 616
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 37/57 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M E G+SKGFGFV F E+A KAV EMN + + + +YV AQ+K +R+ L ++
Sbjct: 225 MDEGGKSKGFGFVSFERHEDAQKAVDEMNTKELNGRAIYVGRAQKKAERQTELKRKF 281
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A KA+ +MNG ++ + ++V + +++R+A ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAEFGAK-ARE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G YF
Sbjct: 190 FTNVYIKNFGDDMDDERLREYF 211
>gi|338721949|ref|XP_003364451.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Equus
caballus]
Length = 660
Score = 287 bits (735), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 209/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|417403591|gb|JAA48595.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 644
Score = 287 bits (734), Expect = 4e-75, Method: Compositional matrix adjust.
Identities = 178/328 (54%), Positives = 205/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R + + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQAGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T N KY VR+P P I P A AVH
Sbjct: 495 QSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIPPLQASQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEMDDESLKELF 211
>gi|119627667|gb|EAX07262.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_b [Homo sapiens]
Length = 645
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 181/329 (55%), Positives = 206/329 (62%), Gaps = 45/329 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 -SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAV 213
S G T N KY VR+P P IQP A AV
Sbjct: 495 QSGGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAV 547
Query: 214 HVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYML 273
HVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+ML
Sbjct: 548 HVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 607
Query: 274 EHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
E ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 ESPESLRSKVDEAVAVLQAHHAKKEAAQK 636
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|350585908|ref|XP_003482078.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Sus scrofa]
Length = 660
Score = 287 bits (734), Expect = 5e-75, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 209/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVATAAPRAVAPYKYASSVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|208431833|ref|NP_001129125.1| polyadenylate-binding protein 4 isoform 1 [Homo sapiens]
gi|332808508|ref|XP_513344.3| PREDICTED: polyadenylate-binding protein 4 isoform 3 [Pan
troglodytes]
gi|395730714|ref|XP_002811047.2| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pongo abelii]
gi|397488842|ref|XP_003815452.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Pan paniscus]
gi|426329062|ref|XP_004025563.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Gorilla
gorilla gorilla]
gi|66267552|gb|AAH94755.1| PABPC4 protein [Homo sapiens]
gi|119627668|gb|EAX07263.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_c [Homo sapiens]
gi|410227598|gb|JAA11018.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410227604|gb|JAA11021.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 286 bits (732), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 209/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|332248413|ref|XP_003273358.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Nomascus
leucogenys]
gi|355557859|gb|EHH14639.1| hypothetical protein EGK_00600 [Macaca mulatta]
gi|383411103|gb|AFH28765.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
gi|384941238|gb|AFI34224.1| polyadenylate-binding protein 4 isoform 1 [Macaca mulatta]
Length = 660
Score = 286 bits (732), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 209/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|297283068|ref|XP_001113342.2| PREDICTED: polyadenylate-binding protein 4 [Macaca mulatta]
Length = 657
Score = 286 bits (732), Expect = 7e-75, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 209/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 323 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 382
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 383 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 435
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 436 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 494
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 495 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 547
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 548 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 607
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 648
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 225 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 279
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/86 (26%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTL 86
N+ ++ G+ S F TL
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFSKTL 215
>gi|344287651|ref|XP_003415566.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Loxodonta
africana]
Length = 644
Score = 286 bits (732), Expect = 8e-75, Method: Compositional matrix adjust.
Identities = 178/328 (54%), Positives = 205/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTG------------------GYNKY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T KY VR+P P +QP A AVH
Sbjct: 495 QSGGVPTAVQSLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AMQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|402854027|ref|XP_003891682.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Papio anubis]
Length = 660
Score = 286 bits (732), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 209/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|73976763|ref|XP_857000.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Canis lupus
familiaris]
Length = 644
Score = 286 bits (731), Expect = 9e-75, Method: Compositional matrix adjust.
Identities = 178/328 (54%), Positives = 204/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDGC 494
Query: 175 SAAGRQTG------------------GYNKY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|348552998|ref|XP_003462314.1| PREDICTED: polyadenylate-binding protein 4-like isoform 3 [Cavia
porcellus]
Length = 615
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 180/313 (57%), Positives = 207/313 (66%), Gaps = 43/313 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG---P 171
G QGF +P SA R S + +R + P G P P
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLR-------------HLAP-TGVPTAVPNLAPR 480
Query: 172 ASVSAAGRQTGGYNKY--PVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAA 229
A+V+AA + KY VR+P P IQP A AVHVQGQEPLT++MLAAA
Sbjct: 481 AAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVHVQGQEPLTASMLAAA 533
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAV
Sbjct: 534 PPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAV 593
Query: 290 LQAHQAKQAAVKK 302
LQAH AK+ A +K
Sbjct: 594 LQAHHAKKEAAQK 606
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|395853068|ref|XP_003799042.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Otolemur
garnettii]
Length = 662
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 183/343 (53%), Positives = 209/343 (60%), Gaps = 56/343 (16%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN--------------------KY--PVRNPGTQPQAQ 199
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAATAAPRAVAPYKYASSVRSP--HP--- 552
Query: 200 IGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITG 259
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITG
Sbjct: 553 --AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITG 610
Query: 260 MLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
MLLEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 653
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|149023878|gb|EDL80375.1| rCG31475, isoform CRA_a [Rattus norvegicus]
Length = 660
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 184/341 (53%), Positives = 211/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPR------ASTGQT-VIRGANMSARPITGQS----TMGPR 161
G QGF +P +S PR A TG RG +A+ + + M
Sbjct: 439 -QGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KYP--VRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRAVAPYKYASNVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|22507391|ref|NP_683717.1| polyadenylate-binding protein 4 isoform 2 [Mus musculus]
gi|16307591|gb|AAH10345.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 615
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 180/313 (57%), Positives = 207/313 (66%), Gaps = 43/313 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPASAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG---P 171
G QGF +P SA R S + +R + P G P P
Sbjct: 439 -QGGRPQGFQGMP---SALRQSGPRPALR-------------HLAP-TGVPTAVPNLAPR 480
Query: 172 ASVSAAGRQTGGYNKY--PVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAA 229
A+V+AA + KY VR+P P IQP A AVHVQGQEPLT++MLAAA
Sbjct: 481 AAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVHVQGQEPLTASMLAAA 533
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAV
Sbjct: 534 PPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAV 593
Query: 290 LQAHQAKQAAVKK 302
LQAH AK+ A +K
Sbjct: 594 LQAHHAKKEAAQK 606
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQ 282
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ G+ F
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELF 211
>gi|148698435|gb|EDL30382.1| mCG5546, isoform CRA_a [Mus musculus]
Length = 632
Score = 286 bits (731), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 180/313 (57%), Positives = 207/313 (66%), Gaps = 43/313 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 343 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 402
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 403 VAGMRALPASAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 455
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG---P 171
G QGF +P SA R S + +R + P G P P
Sbjct: 456 -QGGRPQGFQGMP---SALRQSGPRPALR-------------HLAP-TGVPTAVPNLAPR 497
Query: 172 ASVSAAGRQTGGYNKY--PVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAA 229
A+V+AA + KY VR+P P IQP A AVHVQGQEPLT++MLAAA
Sbjct: 498 AAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVHVQGQEPLTASMLAAA 550
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAV
Sbjct: 551 PPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAV 610
Query: 290 LQAHQAKQAAVKK 302
LQAH AK+ A +K
Sbjct: 611 LQAHHAKKEAAQK 623
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 245 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQ 299
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 148 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 206
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ G+ F
Sbjct: 207 FTNVYIKNFGEEVDDGNLKELF 228
>gi|34419622|ref|NP_570951.2| polyadenylate-binding protein 4 isoform 1 [Mus musculus]
gi|33991671|gb|AAH56432.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
gi|148698437|gb|EDL30384.1| mCG5546, isoform CRA_c [Mus musculus]
Length = 660
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 184/341 (53%), Positives = 211/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPASAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPR------ASTGQT-VIRGANMSARPITGQS----TMGPR 161
G QGF +P +S PR A TG RG +A+ + + M
Sbjct: 439 -QGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQ 282
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ G+ F
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELF 211
>gi|13096978|gb|AAH03283.1| Poly(A) binding protein, cytoplasmic 4 [Mus musculus]
Length = 660
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 184/341 (53%), Positives = 211/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPASAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPR------ASTGQT-VIRGANMSARPITGQS----TMGPR 161
G QGF +P +S PR A TG RG +A+ + + M
Sbjct: 439 -QGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQ 282
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ G+ F
Sbjct: 190 FTNVYIKNFGEEVDDGNLKELF 211
>gi|355745175|gb|EHH49800.1| hypothetical protein EGM_00521 [Macaca fascicularis]
Length = 635
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 209/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 301 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 360
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 361 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 413
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 414 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 472
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 473 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 525
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 526 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 585
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 586 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 626
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 203 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 257
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 106 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 164
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 165 FTNVYIKNFGE 175
>gi|301790633|ref|XP_002930398.1| PREDICTED: polyadenylate-binding protein 4-like [Ailuropoda
melanoleuca]
Length = 644
Score = 285 bits (730), Expect = 1e-74, Method: Compositional matrix adjust.
Identities = 178/328 (54%), Positives = 204/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDGC 494
Query: 175 SAAGRQTG------------------GYNKY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|348552994|ref|XP_003462312.1| PREDICTED: polyadenylate-binding protein 4-like isoform 1 [Cavia
porcellus]
Length = 660
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 209/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEINGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|62087504|dbj|BAD92199.1| PABPC4 protein variant [Homo sapiens]
Length = 358
Score = 285 bits (729), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 182/341 (53%), Positives = 208/341 (60%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 24 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 83
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 84 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 136
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 137 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 195
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P
Sbjct: 196 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHP------- 248
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 249 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 308
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 309 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 349
>gi|56971379|gb|AAH88337.1| Pabpc4 protein, partial [Rattus norvegicus]
Length = 415
Score = 285 bits (728), Expect = 2e-74, Method: Compositional matrix adjust.
Identities = 182/341 (53%), Positives = 208/341 (60%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 81 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 140
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 141 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 193
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 194 -QGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 252
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KYP--VRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P
Sbjct: 253 GAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRAVAPYKYASNVRSPHP------- 305
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 306 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 365
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 366 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 406
>gi|410966840|ref|XP_003989935.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Felis catus]
Length = 660
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 210/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPR------ASTGQT-VIRGANMSARPITGQS----TMGPR 161
G QGF +P +S PR A TG RG +A+ + + M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTG------------------GYNKY--PVRNPGTQPQAQIG 201
G G Q S + G T KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|354485887|ref|XP_003505113.1| PREDICTED: polyadenylate-binding protein 4-like [Cricetulus
griseus]
Length = 685
Score = 285 bits (728), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 182/340 (53%), Positives = 210/340 (61%), Gaps = 53/340 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 348 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 407
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 408 VAGMRALPANAILSQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 460
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PIT----------------- 153
G QGF +P +S PR + G ++R P T
Sbjct: 461 -QGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 519
Query: 154 -------GQSTMGPRGGGPMQAP--GPASVSAAGRQTGGYNKY--PVRNPGTQPQAQIGG 202
G + GG P P P + AA + KY VR+P P
Sbjct: 520 GAGAAQQGLTDSCQSGGVPAAVPSLAPRATVAAAPRAVAPYKYAASVRSP--HP-----A 572
Query: 203 IQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLL 262
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLL
Sbjct: 573 IQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLL 632
Query: 263 EIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
EIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 633 EIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 672
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 250 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQ 304
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 153 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 211
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 212 FTNVYIKNFGE 222
>gi|72534835|ref|NP_001026846.1| poly A binding protein, cytoplasmic 1 a [Danio rerio]
gi|71534060|gb|AAH99992.1| Poly A binding protein, cytoplasmic 1 a [Danio rerio]
Length = 634
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 184/314 (58%), Positives = 213/314 (67%), Gaps = 28/314 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL SQYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTSQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R L +QP GYF+ +PQ Q +Y +Q+ Q+RP PRWA +RP
Sbjct: 386 MASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYPTSQLAQLRPSPRWATQ-GVRP 444
Query: 116 SGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVS 175
Q Q PN SAPR T V R A+ R +T Q MG + GP A A +
Sbjct: 445 --QHFQNMPNAAVRPSAPRPQTFNPV-RPASQVPRMMTSQR-MGSQAMGPRPAA--AGAA 498
Query: 176 AAGRQTGGYNKYP----VRNPG----TQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
Q G +Y VRNP TQPQ + QPA VHVQGQEPLT++MLA
Sbjct: 499 TGPAQVRGVPQYKYAPGVRNPQQRMPTQPQVPMQ--QPA------VHVQGQEPLTASMLA 550
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
AA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAV
Sbjct: 551 AAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAV 610
Query: 288 AVLQAHQAKQAAVK 301
AVLQAHQAK+AA K
Sbjct: 611 AVLQAHQAKEAAQK 624
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M++D G+SKGFGFV F E+A +AV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 223 MTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQ 282
Score = 44.7 bits (104), Expect = 0.058, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A + ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|41053728|ref|NP_957176.1| poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|37590406|gb|AAH59662.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
gi|39645430|gb|AAH63948.1| Poly A binding protein, cytoplasmic 1 b [Danio rerio]
Length = 634
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 175/313 (55%), Positives = 208/313 (66%), Gaps = 27/313 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M + GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y +Q+ Q+RP PRW
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRAAYYPTSQLAQLRPSPRWTT------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
G Q F N+P R SAPR T T +R A+ R ++ Q G A+
Sbjct: 440 QGVRPQHFQNMPGTMRPSAPRPQTFST-MRPASQVPRMMSTQRVATQTMGPRPSTAAAAA 498
Query: 174 VSAAGRQTGGYNKYP-VRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
+ R Y P VRNP TQPQ + QPA VHVQGQEPLT++MLAA
Sbjct: 499 SAPPVRGVPQYKYAPSVRNPQQHMNTQPQVTMQ--QPA------VHVQGQEPLTASMLAA 550
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVA
Sbjct: 551 APPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVA 610
Query: 289 VLQAHQAKQAAVK 301
VLQAHQAK+AA K
Sbjct: 611 VLQAHQAKEAAQK 623
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+G+S+GFGFV F E+A +AV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ F
Sbjct: 190 FTNVYIKNFGEDMDDDKLKDIF 211
>gi|432107630|gb|ELK32863.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 565
Score = 284 bits (727), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 178/319 (55%), Positives = 211/319 (66%), Gaps = 37/319 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 255 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 314
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 315 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 368
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 369 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 426
Query: 166 MQAPGPASVSAAGRQTGGYNKYP-VRNP--GTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
A PA R Y P VRNP Q Q+ QPA VHVQGQEPLT
Sbjct: 427 AAAATPAV-----RTVAQYKYAPGVRNPQQHLNAQPQVTMQQPA------VHVQGQEPLT 475
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SK
Sbjct: 476 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 535
Query: 283 VEEAVAVLQAHQAKQAAVK 301
V+EAVAVLQAHQAK+AA K
Sbjct: 536 VDEAVAVLQAHQAKEAAQK 554
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 154 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 211
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 60 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 118
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 119 FTNVYIKNFGE 129
>gi|417403696|gb|JAA48646.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 660
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 208/341 (60%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQ-FRSA-PRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P R A PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSAIRQAGPRPTLRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
I P A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIPPLQASQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEMDDESLKELF 211
>gi|390465724|ref|XP_002750686.2| PREDICTED: polyadenylate-binding protein 4 [Callithrix jacchus]
Length = 656
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 183/344 (53%), Positives = 210/344 (61%), Gaps = 58/344 (16%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQ-----PQRFYGPTQMTQIRPQPRWAAAPQ 112
+A MR + FQP + GGYFVP +PQ P +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQVGGRPP--YYTPNQLAQMRPNPRWQ---- 438
Query: 113 MRPSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MG 159
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 ---QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMD 495
Query: 160 PRGGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQ 199
G G Q S + G T N KY VR+P P
Sbjct: 496 FGGAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAATAPRAVAPYKYASSVRSP--HP--- 550
Query: 200 IGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITG 259
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITG
Sbjct: 551 --AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITG 608
Query: 260 MLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKKE 303
MLLEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K+
Sbjct: 609 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQKD 652
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 46/83 (55%), Gaps = 1/83 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYFV 83
N+ ++ G+ S F+
Sbjct: 190 FTNVYIKNFGEEVDDESLKELFI 212
>gi|410263248|gb|JAA19590.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
gi|410263254|gb|JAA19593.1| poly(A) binding protein, cytoplasmic 4 (inducible form) [Pan
troglodytes]
Length = 660
Score = 284 bits (726), Expect = 4e-74, Method: Compositional matrix adjust.
Identities = 183/341 (53%), Positives = 208/341 (60%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 EAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|291227649|ref|XP_002733794.1| PREDICTED: polyadenylate-binding protein 1-like [Saccoglossus
kowalevskii]
Length = 655
Score = 283 bits (725), Expect = 5e-74, Method: Compositional matrix adjust.
Identities = 178/336 (52%), Positives = 210/336 (62%), Gaps = 53/336 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MSE GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKEDRKAHLASQ+MQR
Sbjct: 327 MSEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEDRKAHLASQFMQR 386
Query: 61 IANMRM---QQMGQLFQPGSTGGYFVPTLPQPQR--FYGPTQMTQIRPQPRWAAAPQMRP 115
++ +R+ QMGQ++Q + YF T+PQ QR F PTQ+ Q+R PRW + Q RP
Sbjct: 387 MSGLRLPGQAQMGQMYQ-SNVSAYFPQTVPQTQRGFFAAPTQVAQVRASPRWPQSSQPRP 445
Query: 116 SGQTAQGFPNIP-----QFRS-APRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAP 169
+ Q + GF ++P QFR+ PR +T + RP+T P G G Q P
Sbjct: 446 A-QASAGFQSMPNAAAAQFRAGTPRTATS---------NVRPVT------PAGRGVPQPP 489
Query: 170 GPASVSAAGRQTGGYNKYPVRN-------PGTQPQAQIGGIQPAAAGV------------ 210
A+ AG G P QP+A
Sbjct: 490 -TAAQRVAGVMPGQQQAAAAAAAAAQRGVPSAQPRASYKFTTTMRNPPPQIPNQQQSALS 548
Query: 211 -----QAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEID 265
Q+V V GQEPLTS+MLAAA PQEQKQMLGERLFPLIQ + ELAGKITGMLLEID
Sbjct: 549 QQTPQQSVQVPGQEPLTSSMLAAAPPQEQKQMLGERLFPLIQLTHGELAGKITGMLLEID 608
Query: 266 NAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
N+ELL+MLE ESL +KVEEAVAVL+AHQAK+ VK
Sbjct: 609 NSELLHMLESRESLNAKVEEAVAVLKAHQAKETTVK 644
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%), Gaps = 2/59 (3%)
Query: 1 MSED--GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M +D GR+KGFGFVCF P +A A ++N + I + LYV AQ+K +R+A L +++
Sbjct: 223 MQDDHSGRNKGFGFVCFEDPIDAENACDDLNMKDINGRILYVGRAQKKIERQAELRNRF 281
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F++ E A K++ ++NG ++ K +YV +++R + Q ++
Sbjct: 131 VCDENGSKGYGFVHFATEEAANKSIEKVNGMLLNGKKVYVGKFMSRKERYDAMGGQ-QKK 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVFVKNFGD 200
>gi|403292058|ref|XP_003937074.1| PREDICTED: polyadenylate-binding protein 4 isoform 1 [Saimiri
boliviensis boliviensis]
Length = 659
Score = 283 bits (725), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 182/341 (53%), Positives = 208/341 (60%), Gaps = 55/341 (16%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P Q
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HPAIQPL 555
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
QPA VHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 556 QAQPA------VHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 609
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 610 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 650
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|351713677|gb|EHB16596.1| Polyadenylate-binding protein 4 [Heterocephalus glaber]
Length = 661
Score = 283 bits (724), Expect = 6e-74, Method: Compositional matrix adjust.
Identities = 187/343 (54%), Positives = 214/343 (62%), Gaps = 57/343 (16%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFP-------------------NIPQFRSAPRASTGQTV-----------IRG 144
P G QG P N P R P +T Q V G
Sbjct: 443 PQG--FQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLP--TTTQRVGSECPDRLAMDFGG 498
Query: 145 ANMSARPITGQSTMGPRGGGPMQAPG---PASVSAAGRQTGGYNKY--PVRNPGTQPQAQ 199
A + + +T G GG P P A+V+AA + KY VR+P P
Sbjct: 499 AGAAQQGLTDSCQSG--GGVPTAVPNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP--- 551
Query: 200 IGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITG 259
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITG
Sbjct: 552 --AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITG 609
Query: 260 MLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
MLLEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 610 MLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 652
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|344287653|ref|XP_003415567.1| PREDICTED: polyadenylate-binding protein 4 isoform 2 [Loxodonta
africana]
Length = 660
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 182/341 (53%), Positives = 210/341 (61%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPR------ASTGQT-VIRGANMSARPITGQS----TMGPR 161
G QGF +P +S PR A TG RG +A+ + + M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTG------------------GYNKY--PVRNPGTQPQAQIG 201
G G Q S + G T KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVQSLAPRAAVAAAAPRAVAPYKYASSVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
+QP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 551 AMQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 610
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 651
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|149015626|gb|EDL75007.1| rCG64099 [Rattus norvegicus]
Length = 303
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 179/317 (56%), Positives = 207/317 (65%), Gaps = 30/317 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGF CFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+ KAHL +QYMQR
Sbjct: 1 MLEDGRSKGFGFDCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEEWKAHLTNQYMQR 60
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQ---RFYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP RW
Sbjct: 61 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNRRWQ------ 113
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQSTMGPRGGGPMQAPG 170
G QGF +P +S PR + G ++R P T Q GG P P
Sbjct: 114 -QGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGCQSGGVPTAVPN 172
Query: 171 ---PASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A+V+AA + KY VR+P IQP A AVHVQGQEPLT++M
Sbjct: 173 LAPRATVAAAAPRAVAPYKYASNVRSPHP-------AIQPLQAPQPAVHVQGQEPLTASM 225
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 226 LAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 285
Query: 286 AVAVLQAHQAKQAAVKK 302
AVAVLQAH AK+ A +K
Sbjct: 286 AVAVLQAHHAKKEAAQK 302
>gi|62897393|dbj|BAD96637.1| PABPC4 protein variant [Homo sapiens]
Length = 371
Score = 283 bits (724), Expect = 7e-74, Method: Compositional matrix adjust.
Identities = 181/341 (53%), Positives = 207/341 (60%), Gaps = 54/341 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 37 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 96
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 97 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 149
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 150 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 208
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KY--PVRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P
Sbjct: 209 GAGAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHP------- 261
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 262 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 321
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EA AVLQAH AK+ A +K
Sbjct: 322 LEIDNSELLHMLESPESLRSKVDEAAAVLQAHHAKKEAAQK 362
>gi|327283838|ref|XP_003226647.1| PREDICTED: polyadenylate-binding protein 1-like [Anolis
carolinensis]
Length = 636
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 180/322 (55%), Positives = 214/322 (66%), Gaps = 43/322 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y +Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTSQLAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYP--VRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQE 219
A PA +TG KY VRNP TQPQ + QPA VHVQGQE
Sbjct: 498 AAAATPAV------RTGPQYKYAAGVRNPQQHLNTQPQVAMQ--QPA------VHVQGQE 543
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
PLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL
Sbjct: 544 PLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESL 603
Query: 280 KSKVEEAVAVLQAHQAKQAAVK 301
+SKV+EAVAVLQAHQAK+AA K
Sbjct: 604 RSKVDEAVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|119627673|gb|EAX07268.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_h [Homo sapiens]
Length = 661
Score = 283 bits (724), Expect = 8e-74, Method: Compositional matrix adjust.
Identities = 184/342 (53%), Positives = 209/342 (61%), Gaps = 55/342 (16%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 439 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASV-SAAGRQTGGYN------------------KY--PVRNPGTQPQAQI 200
G G Q S S G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP---- 551
Query: 201 GGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGM 260
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGM
Sbjct: 552 -AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGM 610
Query: 261 LLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LLEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 611 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 652
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|74189486|dbj|BAE22747.1| unnamed protein product [Mus musculus]
Length = 590
Score = 283 bits (723), Expect = 9e-74, Method: Compositional matrix adjust.
Identities = 180/337 (53%), Positives = 210/337 (62%), Gaps = 45/337 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 255 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 314
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 315 VAGMRALPASAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 367
Query: 115 PSGQTAQGFPNIPQF--RSAPR------ASTGQT-VIRGANMSARPITGQS----TMGPR 161
G QGF +P +S PR A TG RG +A+ + + M
Sbjct: 368 -QGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 426
Query: 162 GGGPMQ----------------APGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQP 205
G G Q A S + R++ G VR + A + IQP
Sbjct: 427 GAGAAQQGLTDSCQCWRRPYSRAKPCTSGRSCCRRSQGCGSIQVRLQLSA--AALPAIQP 484
Query: 206 AAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEID 265
A AV VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEID
Sbjct: 485 LQAPQPAVQVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEID 544
Query: 266 NAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
N+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 545 NSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 581
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 157 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQ 211
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 60 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 118
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ G+ F
Sbjct: 119 FTNVYIKNFGEEVDDGNLKELF 140
>gi|390476078|ref|XP_002759394.2| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 633
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 323 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 382
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 383 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 436
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 437 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 494
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 495 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 546
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 547 LASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 606
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 607 AVAVLQAHQAKEAAQK 622
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 222 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 279
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTL 86
N+ ++ G+ F P L
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGPAL 215
>gi|207080212|ref|NP_001128842.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|75070631|sp|Q5R8F7.1|PABP1_PONAB RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|55730462|emb|CAH91953.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 282 bits (722), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|119612225|gb|EAW91819.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_e [Homo
sapiens]
Length = 633
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 323 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 382
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 383 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 436
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 437 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 494
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 495 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 546
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 547 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 606
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 607 AVAVLQAHQAKEAAQK 622
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 222 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 279
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTL 86
N+ ++ G+ F P L
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGPAL 215
>gi|431901758|gb|ELK08635.1| Polyadenylate-binding protein 1 [Pteropus alecto]
Length = 636
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPNLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|26354649|dbj|BAC40951.1| unnamed protein product [Mus musculus]
Length = 636
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIKKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|31560656|ref|NP_032800.2| polyadenylate-binding protein 1 [Mus musculus]
gi|341941223|sp|P29341.2|PABP1_MOUSE RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|13278026|gb|AAH03870.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|15029950|gb|AAH11207.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|18606321|gb|AAH23145.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|26336853|dbj|BAC32110.1| unnamed protein product [Mus musculus]
gi|29145018|gb|AAH46233.1| Poly(A) binding protein, cytoplasmic 1 [Mus musculus]
gi|74144576|dbj|BAE36120.1| unnamed protein product [Mus musculus]
gi|74145579|dbj|BAE36203.1| unnamed protein product [Mus musculus]
gi|74179929|dbj|BAE36522.1| unnamed protein product [Mus musculus]
gi|74198265|dbj|BAE35302.1| unnamed protein product [Mus musculus]
gi|74198320|dbj|BAE35327.1| unnamed protein product [Mus musculus]
gi|74214225|dbj|BAE40360.1| unnamed protein product [Mus musculus]
gi|74223327|dbj|BAE21553.1| unnamed protein product [Mus musculus]
gi|148676871|gb|EDL08818.1| poly A binding protein, cytoplasmic 1 [Mus musculus]
Length = 636
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|53754|emb|CAA46522.1| poly(A) binding protein [Mus musculus]
Length = 636
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|41386798|ref|NP_776993.1| polyadenylate-binding protein 1 [Bos taurus]
gi|46367787|ref|NP_002559.2| polyadenylate-binding protein 1 [Homo sapiens]
gi|383872540|ref|NP_001244826.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|73974130|ref|XP_856708.1| PREDICTED: polyadenylate-binding protein 1 isoform 6 [Canis lupus
familiaris]
gi|194036975|ref|XP_001927782.1| PREDICTED: polyadenylate-binding protein 1 [Sus scrofa]
gi|332213999|ref|XP_003256115.1| PREDICTED: polyadenylate-binding protein 1 [Nomascus leucogenys]
gi|344273312|ref|XP_003408467.1| PREDICTED: polyadenylate-binding protein 1-like [Loxodonta
africana]
gi|402878853|ref|XP_003903080.1| PREDICTED: polyadenylate-binding protein 1 [Papio anubis]
gi|3183544|sp|P11940.2|PABP1_HUMAN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|47117093|sp|P61286.1|PABP1_BOVIN RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|1562511|gb|AAD08718.1| poly(A)-binding protein [Homo sapiens]
gi|8979741|emb|CAB96752.1| polyadenylate-binding protein 1 [Bos taurus]
gi|16358990|gb|AAH15958.1| PABPC1 protein [Homo sapiens]
gi|23270713|gb|AAH23520.1| Poly(A) binding protein, cytoplasmic 1 [Homo sapiens]
gi|74268035|gb|AAI02366.1| Poly(A) binding protein, cytoplasmic 1 [Bos taurus]
gi|119612221|gb|EAW91815.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|119612223|gb|EAW91817.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_b [Homo
sapiens]
gi|123993665|gb|ABM84434.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|123999981|gb|ABM87499.1| poly(A) binding protein, cytoplasmic 1 [synthetic construct]
gi|168278070|dbj|BAG11013.1| polyadenylate-binding protein 1 [synthetic construct]
gi|296480464|tpg|DAA22579.1| TPA: polyadenylate-binding protein 1 [Bos taurus]
gi|380811722|gb|AFE77736.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940022|gb|AFI33616.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|384940024|gb|AFI33617.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 636
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|291388359|ref|XP_002710763.1| PREDICTED: poly A binding protein, cytoplasmic 4 [Oryctolagus
cuniculus]
Length = 636
Score = 282 bits (721), Expect = 1e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|301756358|ref|XP_002914026.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 636
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|335775987|gb|AEH58755.1| polyadenylate-binding protein 1-like protein [Equus caballus]
Length = 510
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 200 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 259
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 260 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 313
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 314 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 371
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 372 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 423
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 424 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 483
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 484 AVAVLQAHQAKEAAQK 499
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 99 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 156
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 7 DENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKEF 64
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 65 TNVYIKNFGE 74
>gi|74212334|dbj|BAE30919.1| unnamed protein product [Mus musculus]
Length = 636
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|426236179|ref|XP_004012050.1| PREDICTED: polyadenylate-binding protein 1 [Ovis aries]
Length = 577
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 267 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 326
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 327 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 380
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 381 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 438
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 439 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 490
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 491 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 550
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 551 AVAVLQAHQAKEAAQK 566
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 166 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 223
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 72 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 130
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 131 FTNVYIKNFGE 141
>gi|291408594|ref|XP_002720593.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oryctolagus cuniculus]
Length = 636
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|397502367|ref|XP_003821832.1| PREDICTED: polyadenylate-binding protein 1 [Pan paniscus]
Length = 656
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 346 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 405
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 406 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 459
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 460 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 517
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 518 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 569
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 570 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 629
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 630 AVAVLQAHQAKEAAQK 645
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 245 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 302
Score = 45.4 bits (106), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 151 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 209
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 210 FTNVYIKNFGE 220
>gi|35570|emb|CAA68428.1| unnamed protein product [Homo sapiens]
Length = 633
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 323 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 382
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 383 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQVAQLRPSPRWTA------ 436
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 437 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 494
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 495 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 546
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 547 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 606
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 607 AVAVLQAHQAKEAAQK 622
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 222 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 279
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTL 86
N+ ++ G+ F P L
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGPAL 215
>gi|281344898|gb|EFB20482.1| hypothetical protein PANDA_020836 [Ailuropoda melanoleuca]
Length = 674
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 183/342 (53%), Positives = 209/342 (61%), Gaps = 55/342 (16%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 339 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 398
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 399 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 451
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQ---STMGPRGGGPMQ 167
G QGF +P +S PR + G ++R P T Q S R
Sbjct: 452 -QGGRPQGFQGMPSAIRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 510
Query: 168 APGPASVS-AAGRQTGG------------------------YNKY--PVRNPGTQPQAQI 200
G A G Q+GG KY VR+P P
Sbjct: 511 GAGAAQQGLTDGCQSGGGVPTAVQTLAPRAAVAAAAPRAVAPYKYASSVRSP--HP---- 564
Query: 201 GGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGM 260
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGM
Sbjct: 565 -AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGM 623
Query: 261 LLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LLEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 624 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 665
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 241 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 295
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 144 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 202
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 203 FTNVYIKNFGE 213
>gi|338728570|ref|XP_001492678.3| PREDICTED: polyadenylate-binding protein 1 [Equus caballus]
Length = 565
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 255 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 314
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 315 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 368
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 369 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 426
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 427 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 478
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 479 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 538
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 539 AVAVLQAHQAKEAAQK 554
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 154 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 211
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 60 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 118
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 119 FTNVYIKNFGE 129
>gi|348588301|ref|XP_003479905.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 599
Score = 282 bits (721), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 289 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 348
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 349 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 402
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 403 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 460
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 461 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 512
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 513 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 572
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 573 AVAVLQAHQAKEAAQK 588
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 188 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 245
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 94 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 152
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 153 FTNVYIKNFGE 163
>gi|440913295|gb|ELR62762.1| Polyadenylate-binding protein 1, partial [Bos grunniens mutus]
Length = 572
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 262 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 321
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 322 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 375
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 376 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 433
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 434 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 485
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 486 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 545
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 546 AVAVLQAHQAKEAAQK 561
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 161 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 218
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 67 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 125
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 126 FTNVYIKNFGE 136
>gi|197097606|ref|NP_001126097.1| polyadenylate-binding protein 1 [Pongo abelii]
gi|55730342|emb|CAH91893.1| hypothetical protein [Pongo abelii]
Length = 636
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 172/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGR++ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRVVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|426360413|ref|XP_004047438.1| PREDICTED: polyadenylate-binding protein 1 [Gorilla gorilla
gorilla]
Length = 682
Score = 281 bits (720), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 372 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 431
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 432 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 485
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 486 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 543
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 544 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 595
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 596 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 655
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 656 AVAVLQAHQAKEAAQK 671
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 271 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 328
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 177 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 235
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 236 FTNVYIKNFGE 246
>gi|281350417|gb|EFB26001.1| hypothetical protein PANDA_001865 [Ailuropoda melanoleuca]
Length = 640
Score = 281 bits (719), Expect = 2e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 330 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 389
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 390 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 443
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 444 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 501
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 502 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 553
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 554 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 613
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 614 AVAVLQAHQAKEAAQK 629
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 229 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 286
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 135 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 193
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 194 FTNVYIKNFGE 204
>gi|13435438|gb|AAH04587.1| Pabpc1 protein [Mus musculus]
Length = 527
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 210/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 217 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 276
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 277 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 330
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 331 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 388
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 389 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 440
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 441 LAFAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 500
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 501 AVAVLQAHQAKEAAQK 516
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 116 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 173
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 22 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 80
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 81 FTNVYIKNFGE 91
>gi|410987610|ref|XP_004000091.1| PREDICTED: polyadenylate-binding protein 1 [Felis catus]
Length = 672
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 362 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 421
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 422 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 475
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 476 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 533
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 534 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 585
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 586 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 645
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 646 AVAVLQAHQAKEAAQK 661
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 261 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 318
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 167 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 225
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 226 FTNVYIKNFGE 236
>gi|444706057|gb|ELW47419.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 636
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A + +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERVSEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|432907583|ref|XP_004077665.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 635
Score = 281 bits (719), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 176/320 (55%), Positives = 203/320 (63%), Gaps = 39/320 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A +R L +QP GYF+ +PQ Q +Y Q+ Q+RP PRWA
Sbjct: 386 MATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYSANQLAQLRPSPRWAT------ 439
Query: 116 SGQTAQGFPNIPQFR--SAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPA- 172
G Q F NI SAPR T + R T +T PR + P A
Sbjct: 440 QGVRPQHFQNIQNAMRPSAPRPQTFNAI--------RASTATNTQVPRMMASQRMPTQAL 491
Query: 173 --------SVSAAGRQTGGYNKYP-VRNPGTQ--PQAQIGGIQPAAAGVQAVHVQGQEPL 221
+ +A R Y P VRNP Q Q+ QPA VHVQGQEPL
Sbjct: 492 SQRPAAASATTAPVRAMPQYKYAPGVRNPQQHMASQQQVPMPQPA------VHVQGQEPL 545
Query: 222 TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
T++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+S
Sbjct: 546 TASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRS 605
Query: 282 KVEEAVAVLQAHQAKQAAVK 301
KV+EAVAVLQAHQAK+AA K
Sbjct: 606 KVDEAVAVLQAHQAKEAAQK 625
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M++D G+SKGFGFV F E+A KAV +MNG+ + + +YV AQ+K +R+ L ++ Q
Sbjct: 223 MTDDTGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-ARE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|149637721|ref|XP_001509272.1| PREDICTED: polyadenylate-binding protein 1-like [Ornithorhynchus
anatinus]
Length = 636
Score = 281 bits (718), Expect = 3e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 210/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y +Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPASQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIPQ-FR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR G +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPSAIRPAAPRPPFG--TMRPASTQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|403305068|ref|XP_003943097.1| PREDICTED: polyadenylate-binding protein 1 [Saimiri boliviensis
boliviensis]
Length = 803
Score = 280 bits (717), Expect = 5e-73, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 493 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 552
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 553 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 606
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 607 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 664
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 665 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 716
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 717 LASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 776
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 777 AVAVLQAHQAKEAAQK 792
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 392 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 449
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 298 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 356
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 357 FTNVYIKNFGE 367
>gi|193787802|dbj|BAG53005.1| unnamed protein product [Homo sapiens]
Length = 636
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 172/316 (54%), Positives = 210/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VH QGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHAQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|348513239|ref|XP_003444150.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Oreochromis niloticus]
Length = 634
Score = 280 bits (716), Expect = 6e-73, Method: Compositional matrix adjust.
Identities = 180/329 (54%), Positives = 206/329 (62%), Gaps = 59/329 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR--FYGPT--QMTQIRPQPRWA---AAP 111
+A++R + +Q GYF+ +PQ Q Y P QM Q+RP PRW P
Sbjct: 386 MASVRAVPNPVINPYQAAPPSGYFMAAIPQAQNRAAYYPAAGQMAQLRPGPRWTTQNVRP 445
Query: 112 Q--------MRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPR-- 161
Q +RPSG Q F + PR T Q V G TMGPR
Sbjct: 446 QHFQNMSGGIRPSGPRPQTFSTVRPSSQVPRMMTTQRV------------GTQTMGPRPA 493
Query: 162 -----GGGPMQAPGPASVSAAGRQTGGYNKYPVRNP----GTQPQAQIGGIQPAAAGVQA 212
P++ P AAG VRNP TQPQ + QPA
Sbjct: 494 TAAAAAATPVRGV-PQYKYAAG----------VRNPQQHMNTQPQVTMQ--QPA------ 534
Query: 213 VHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYM 272
VHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+M
Sbjct: 535 VHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHM 594
Query: 273 LEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
LE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 595 LESPESLRSKVDEAVAVLQAHQAKEAAQK 623
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+G+S+GFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|194386544|dbj|BAG61082.1| unnamed protein product [Homo sapiens]
Length = 604
Score = 280 bits (715), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 172/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 294 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 353
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A+++ + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 354 MASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 407
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 408 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 465
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 466 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 517
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 518 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 577
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 578 AVAVLQAHQAKEAAQK 593
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 193 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 250
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 99 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 157
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 158 FTNVYIKNFGE 168
>gi|348513241|ref|XP_003444151.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oreochromis niloticus]
Length = 637
Score = 280 bits (715), Expect = 8e-73, Method: Compositional matrix adjust.
Identities = 179/329 (54%), Positives = 208/329 (63%), Gaps = 56/329 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR--FYGPT--QMTQIRPQPRWA---AAP 111
+A++R + +Q GYF+ +PQ Q Y P QM Q+RP PRW P
Sbjct: 386 MASVRAVPNPVINPYQAAPPSGYFMAAIPQAQNRAAYYPAAGQMAQLRPGPRWTTQNVRP 445
Query: 112 Q--------MRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPR-- 161
Q +RPSG Q F + PR T Q V + + +TMGPR
Sbjct: 446 QHFQNMSGGIRPSGPRPQTFSTVRPSSQVPRMMTTQRVGQSTD---------TTMGPRPA 496
Query: 162 -----GGGPMQAPGPASVSAAGRQTGGYNKYPVRNP----GTQPQAQIGGIQPAAAGVQA 212
P++ P AAG VRNP TQPQ + QPA
Sbjct: 497 TAAAAAATPVRGV-PQYKYAAG----------VRNPQQHMNTQPQVTMQ--QPA------ 537
Query: 213 VHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYM 272
VHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+M
Sbjct: 538 VHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHM 597
Query: 273 LEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
LE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 598 LESPESLRSKVDEAVAVLQAHQAKEAAQK 626
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+G+S+GFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DENGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKLMYVGRAQKKVERQTELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|71725699|gb|AAZ38995.1| polyA binding protein [Oxyuranus scutellatus]
Length = 306
Score = 279 bits (714), Expect = 9e-73, Method: Compositional matrix adjust.
Identities = 176/317 (55%), Positives = 213/317 (67%), Gaps = 42/317 (13%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
GRSKGFGFVCFSSP+EATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR+A++
Sbjct: 1 GRSKGFGFVCFSSPDEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASV 60
Query: 65 RM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPSGQT 119
R + +QP GYF+ +PQ Q +Y +Q+TQ+RP PRWAA G
Sbjct: 61 RAVPSPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTSQITQLRPSPRWAA------QGAR 114
Query: 120 AQGFPNIP-QFR-SAPRASTGQTVIRGANMSARPITGQ-------STMGPRGGGPMQAPG 170
F N+P R +APR + +R A+ R ++ Q TMGPR
Sbjct: 115 PHPFQNMPGAIRPTAPRPPF--STMRPASQVTRVMSTQRVANTSTQTMGPRPAA-----A 167
Query: 171 PASVSAAGRQTGGYNKYP--VRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
A+ + A R Y KY VRNP TQPQ + QPA VHVQGQEPLT++
Sbjct: 168 AAATTPAVRTVPQY-KYAAGVRNPQQHLNTQPQ--VAMQQPA------VHVQGQEPLTAS 218
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE E+L+SKV+
Sbjct: 219 MLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPETLRSKVD 278
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAHQAK+AA K
Sbjct: 279 EAVAVLQAHQAKEAAQK 295
>gi|432095458|gb|ELK26654.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 657
Score = 279 bits (713), Expect = 1e-72, Method: Compositional matrix adjust.
Identities = 182/339 (53%), Positives = 206/339 (60%), Gaps = 55/339 (16%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 322 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 381
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 382 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 434
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR--PITGQST---------MGPR 161
G QGF +P +S PR + G ++R P T Q M
Sbjct: 435 -QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 493
Query: 162 GGGPMQAPGPASV-SAAGRQTGGYN------------------KY--PVRNPGTQPQAQI 200
G G Q S S G T N KY VR+P P
Sbjct: 494 GAGAAQQGLTDSCQSGGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP---- 547
Query: 201 GGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGM 260
I P A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGM
Sbjct: 548 -AIPPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGM 606
Query: 261 LLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
LLEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A
Sbjct: 607 LLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEA 645
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 224 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 278
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 127 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 185
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 186 FTNVYIKNFGEEVDDESLKELF 207
>gi|194381714|dbj|BAG64226.1| unnamed protein product [Homo sapiens]
Length = 591
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 172/316 (54%), Positives = 210/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVT MNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 281 MMEGGRSKGFGFVCFSSPEEATKAVTGMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 340
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 341 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 394
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 395 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 452
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 453 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 504
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 505 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 564
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 565 AVAVLQAHQAKEAAQK 580
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 180 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 237
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + + V + +++R+A L ++ +
Sbjct: 86 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVSVGRFKSRKEREAELGAR-AKE 144
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 145 FTNVYIKNFGE 155
>gi|19705459|ref|NP_599180.1| polyadenylate-binding protein 1 [Rattus norvegicus]
gi|47605941|sp|Q9EPH8.1|PABP1_RAT RecName: Full=Polyadenylate-binding protein 1; Short=PABP-1;
Short=Poly(A)-binding protein 1
gi|12188891|emb|CAC21554.1| poly(A) binding protein [Rattus norvegicus]
gi|52789215|gb|AAH83176.1| Poly(A) binding protein, cytoplasmic 1 [Rattus norvegicus]
gi|149066519|gb|EDM16392.1| rCG60104 [Rattus norvegicus]
Length = 636
Score = 278 bits (712), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 177/324 (54%), Positives = 210/324 (64%), Gaps = 47/324 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPG------PASVSAAGRQTGGYNKYPVRNP--GTQPQAQIGGIQPAAAGVQAVHVQG 217
A P AAG VRNP Q Q+ QPA VHVQG
Sbjct: 498 ATAATPAVRTVPQYKYAAG----------VRNPQQHLNAQPQVTMQQPA------VHVQG 541
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
QEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE E
Sbjct: 542 QEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPE 601
Query: 278 SLKSKVEEAVAVLQAHQAKQAAVK 301
SL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 602 SLRSKVDEAVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|52346016|ref|NP_001005051.1| poly(A) binding protein, cytoplasmic 1 [Xenopus (Silurana)
tropicalis]
gi|49903495|gb|AAH76931.1| polyadenylate-binding protein 1 [Xenopus (Silurana) tropicalis]
Length = 634
Score = 278 bits (711), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 178/324 (54%), Positives = 210/324 (64%), Gaps = 48/324 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQ-MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPS 116
+A++R+ + +QP + YF+ +P Q +Y P Q+ Q+RP PRW A
Sbjct: 386 MASVRVPNPVINPYQPPPSS-YFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTA------Q 438
Query: 117 GQTAQGFPNIP-QFR-SAPRASTGQTVIRGANMSARPITGQS-------TMGPRGGGPMQ 167
G F N+P R +APR T T+ +N R ++ Q TMGPR
Sbjct: 439 GARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRVVSAQRVANTSTQTMGPRPTTAAA 498
Query: 168 APG------PASVSAAGRQTGGYNKYPVRNP----GTQPQAQIGGIQPAAAGVQAVHVQG 217
A P AAG VRNP TQPQ + QPA VHVQG
Sbjct: 499 AATSAVRTVPQYKYAAG----------VRNPQQHLNTQPQVAMQ--QPA------VHVQG 540
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
QEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE E
Sbjct: 541 QEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPE 600
Query: 278 SLKSKVEEAVAVLQAHQAKQAAVK 301
SL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 601 SLRSKVDEAVAVLQAHQAKEAAQK 624
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
++G+SKGFGFV F E+A KAV +MNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DDNGKSKGFGFVSFERHEDAQKAVDDMNGKDMNGKAIYVGRAQKKVERQTELKRKFEQ 282
Score = 46.2 bits (108), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|344257059|gb|EGW13163.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 565
Score = 276 bits (706), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 170/316 (53%), Positives = 210/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KP YVALAQRKE+R+AHL +Q+MQR
Sbjct: 255 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQHMQR 314
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A+++ + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 315 MASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 368
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 369 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 426
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 427 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 478
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 479 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 538
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 539 AVAVLQAHQAKEAAQK 554
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 154 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 211
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 60 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 118
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 119 FTNVYIKNFGE 129
>gi|354498761|ref|XP_003511482.1| PREDICTED: polyadenylate-binding protein 1-like, partial
[Cricetulus griseus]
Length = 571
Score = 276 bits (706), Expect = 7e-72, Method: Compositional matrix adjust.
Identities = 170/316 (53%), Positives = 210/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KP YVALAQRKE+R+AHL +Q+MQR
Sbjct: 261 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPFYVALAQRKEERQAHLTNQHMQR 320
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A+++ + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 321 MASVQAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 374
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 375 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 432
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 433 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 484
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 485 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 544
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 545 AVAVLQAHQAKEAAQK 560
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 160 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 217
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 66 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 124
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 125 FTNVYIKNFGE 135
>gi|291408596|ref|XP_002720594.1| PREDICTED: polyadenylate-binding protein 1-like isoform 2
[Oryctolagus cuniculus]
Length = 614
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 167/310 (53%), Positives = 196/310 (63%), Gaps = 41/310 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVS 175
G F N+P GA A P STM P + V+
Sbjct: 440 QGARPHPFQNMP----------------GAIRPAAPRPPFSTMRPASSQVPRVMSTQRVA 483
Query: 176 AAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQ----AVHVQGQEPLTSTMLAAAQP 231
QT G +P A PA V AVHVQGQEPLT++MLA+A P
Sbjct: 484 NTSTQTMG----------PRPAAAAAAATPAVRTVTMQQPAVHVQGQEPLTASMLASAPP 533
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAVLQ
Sbjct: 534 QEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 593
Query: 292 AHQAKQAAVK 301
AHQAK+AA K
Sbjct: 594 AHQAKEAAQK 603
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|195487595|ref|XP_002091975.1| GE11925 [Drosophila yakuba]
gi|194178076|gb|EDW91687.1| GE11925 [Drosophila yakuba]
Length = 634
Score = 276 bits (705), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 163/326 (50%), Positives = 207/326 (63%), Gaps = 41/326 (12%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF++P EAT AVTE+NGR++GSKPLYVALAQRKE+RKAHLASQYM+ +
Sbjct: 321 DEEGRSKGFGFVCFNAPSEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRP------ 115
MRMQQ+GQ+FQP + G+FVPTL QRF+G TQ+R PRW PQ+RP
Sbjct: 381 TGMRMQQLGQIFQPNTASGFFVPTLQSNQRFFGSQVATQMRNTPRW--VPQVRPPAAVQG 438
Query: 116 -------SGQTAQGFPNIP-QF-RSAPRASTGQTVIRGA-----------NMSARPITGQ 155
+G +P QF +A A Q ++G N AR ITGQ
Sbjct: 439 VQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMRNTGARAITGQ 498
Query: 156 STMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAV 213
T P MQ PG A ++T Y KY +RNP P Q+ QP +Q
Sbjct: 499 QTAAPN----MQIPGAQIAGGAQQRTSNY-KYTSNMRNP---PVQQLHQTQPIPQQLQG- 549
Query: 214 HVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYML 273
+ E L +++LA A+PQEQKQ+LGERL+P+I+ M+ LAGKITGMLLEI+N+ELL+M+
Sbjct: 550 --KNSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLHMI 607
Query: 274 EHNESLKSKVEEAVAVLQAHQAKQAA 299
E E+LK+KVEEAVAVLQ H+ + A
Sbjct: 608 EDQEALKAKVEEAVAVLQVHRVTEPA 633
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV F + E A AV +NG+ +G K LYVA AQ+K +R+ L ++
Sbjct: 218 EDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKF 273
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A ++ ++NG ++ K +YV +++R+ L + +
Sbjct: 124 DEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 182
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP 84
N+ ++ + F +F P
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEP 205
>gi|449284083|gb|EMC90664.1| Polyadenylate-binding protein 1, partial [Columba livia]
Length = 573
Score = 275 bits (704), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 172/317 (54%), Positives = 210/317 (66%), Gaps = 32/317 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 262 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 321
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQI-RPQPRWAAAPQMR 114
+A++R + +QP GYF+ +PQ Q +Y Q+ Q+ RP PRW A
Sbjct: 322 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTA----- 376
Query: 115 PSGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGG 164
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 377 -QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAA 433
Query: 165 PMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
A P+ + + + P ++ TQPQ + QPA VHVQGQEPLT++
Sbjct: 434 AATAATPSVRTVPQYKYAAGVRNPQQHLNTQPQ--VAMQQPA------VHVQGQEPLTAS 485
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+
Sbjct: 486 MLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVD 545
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAHQAK+AA K
Sbjct: 546 EAVAVLQAHQAKEAAQK 562
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 161 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 218
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 67 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 125
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 126 FTNVYIKNFGE 136
>gi|395512247|ref|XP_003760354.1| PREDICTED: polyadenylate-binding protein 1 [Sarcophilus harrisii]
Length = 654
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 33/316 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 346 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 405
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP S GYF+ +PQ Q +Y +Q+ Q+RP PRW A
Sbjct: 406 MASVRAVPNPVINPYQPPS--GYFMAAIPQTQNRAAYYPASQIAQLRPSPRWTA------ 457
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 458 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 515
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 516 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 567
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 568 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 627
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 628 AVAVLQAHQAKEAAQK 643
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 245 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 302
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 151 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 209
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 210 FTNVYIKNFGE 220
>gi|348529271|ref|XP_003452137.1| PREDICTED: polyadenylate-binding protein 1-like [Oreochromis
niloticus]
Length = 635
Score = 275 bits (703), Expect = 2e-71, Method: Compositional matrix adjust.
Identities = 176/324 (54%), Positives = 203/324 (62%), Gaps = 47/324 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A +R L +QP GYF+ +PQ Q +Y Q+ Q+RP PRWA
Sbjct: 386 MATVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYSANQLAQLRPGPRWAT------ 439
Query: 116 SGQTAQGFPNIPQFR--SAPR---------ASTGQTVIRGANMSARPITGQSTMGPRGGG 164
G Q F N+P +APR A+T T + S R T P
Sbjct: 440 QGVRPQHFQNMPNAMRPTAPRPQPLNTIRAAATTNTQVPRMMASQRIPTQAVNQRPANAS 499
Query: 165 PMQAPG---PASVSAAGRQTGGYNKYPVRNP----GTQPQAQIGGIQPAAAGVQAVHVQG 217
AP P AAG VRN +QPQ + QPA VHVQG
Sbjct: 500 AAAAPVRAMPQYKYAAG----------VRNTQQHMASQPQVTMQ--QPA------VHVQG 541
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
QEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE E
Sbjct: 542 QEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPE 601
Query: 278 SLKSKVEEAVAVLQAHQAKQAAVK 301
SL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 602 SLRSKVDEAVAVLQAHQAKEAAQK 625
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + + +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGRQVYVGRAQKKGERQNELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-ARE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|334349575|ref|XP_003342221.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 707
Score = 274 bits (701), Expect = 3e-71, Method: Compositional matrix adjust.
Identities = 179/330 (54%), Positives = 209/330 (63%), Gaps = 59/330 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLY+ALAQRKE+R+AHL +QYMQR
Sbjct: 395 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQRKEERQAHLTNQYMQR 454
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R L +QP S GYF+ +PQ Q +Y +QM +RP PRW +
Sbjct: 455 MASVRAVPNPVLNPYQPPS--GYFMTAIPQTQNRPAYYPASQMAPLRPSPRWTS------ 506
Query: 116 SGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQ----STMGPRGGGPMQAPGP 171
G F N+P IR A +ARP G S+ PRG G Q
Sbjct: 507 QGARPHPFQNLP------------GAIRPA--AARPPFGSMRPTSSQLPRGVGASQRIVN 552
Query: 172 ASVSAAG--------------RQTGGYNKYP--VRNP----GTQPQAQIGGIQPAAAGVQ 211
+S A G + G KY VRNP QPQA + QPA
Sbjct: 553 SSTQALGPPLGASAGAAGAPGVRMGPQYKYAAGVRNPQHHVNVQPQASVQ--QPA----- 605
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
VHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 606 -VHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLH 664
Query: 272 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 665 MLESPESLRSKVDEAVAVLQAHQAKEAAQK 694
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 294 DESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQ 351
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 200 VCDEHGSKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 258
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 259 FTNVYIKNFGE 269
>gi|17136378|ref|NP_476667.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|24654793|ref|NP_725749.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|24654797|ref|NP_725750.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|195335482|ref|XP_002034394.1| GM21847 [Drosophila sechellia]
gi|76803808|sp|P21187.3|PABP_DROME RecName: Full=Polyadenylate-binding protein; Short=PABP;
Short=Poly(A)-binding protein
gi|7302665|gb|AAF57745.1| polyA-binding protein, isoform B [Drosophila melanogaster]
gi|7302666|gb|AAF57746.1| polyA-binding protein, isoform C [Drosophila melanogaster]
gi|21428474|gb|AAM49897.1| LD24412p [Drosophila melanogaster]
gi|21626472|gb|AAM68175.1| polyA-binding protein, isoform A [Drosophila melanogaster]
gi|194126364|gb|EDW48407.1| GM21847 [Drosophila sechellia]
gi|220946756|gb|ACL85921.1| pAbp-PA [synthetic construct]
Length = 634
Score = 274 bits (700), Expect = 4e-71, Method: Compositional matrix adjust.
Identities = 158/328 (48%), Positives = 201/328 (61%), Gaps = 45/328 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF++ EAT AVTE+NGR++GSKPLYVALAQRKE+RKAHLASQYM+ +
Sbjct: 321 DEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
MRMQQ+GQ++QP + G+FVPTLP QRF+G TQ+R PRW PQ+RP
Sbjct: 381 TGMRMQQLGQIYQPNAASGFFVPTLPSNQRFFGSQVATQMRNTPRW--VPQVRPPAAIQG 438
Query: 122 GFPNI----------------------------PQFRSAPRASTGQTVIRGANMSARPIT 153
PQ + A+ +R N AR IT
Sbjct: 439 VQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMR--NTGARAIT 496
Query: 154 GQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQ 211
GQ T P MQ PG A ++T Y KY +RNP P Q+ QP +Q
Sbjct: 497 GQQTAAPN----MQIPGAQIAGGAQQRTSNY-KYTSNMRNP---PVPQLHQTQPIPQQLQ 548
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
+ E L +++LA A+PQEQKQ+LGERL+P+I+ M+ LAGKITGMLLEI+N+ELL+
Sbjct: 549 G---KNSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLH 605
Query: 272 MLEHNESLKSKVEEAVAVLQAHQAKQAA 299
M+E E+LK+KVEEAVAVLQ H+ + A
Sbjct: 606 MIEDQEALKAKVEEAVAVLQVHRVTEPA 633
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV F + E A AV +NG+ +G K LYVA AQ+K +R+ L ++
Sbjct: 218 EDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKF 273
Score = 44.3 bits (103), Expect = 0.060, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A ++ ++NG ++ K +YV +++R+ L + +
Sbjct: 124 DEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 182
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP 84
N+ ++ + F +F P
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEP 205
>gi|71896197|ref|NP_001026768.1| polyadenylate-binding protein 1 [Gallus gallus]
gi|53130422|emb|CAG31540.1| hypothetical protein RCJMB04_7l20 [Gallus gallus]
Length = 637
Score = 273 bits (698), Expect = 7e-71, Method: Compositional matrix adjust.
Identities = 173/317 (54%), Positives = 210/317 (66%), Gaps = 32/317 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQI-RPQPRWAAAPQMR 114
+A++R + +QP GYF+ +PQ Q +Y Q+ Q+ RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYHTNQLAQLARPSPRWTA----- 440
Query: 115 PSGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGG 164
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 441 -QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAA 497
Query: 165 PMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
A PA + + + P ++ TQPQ + QPA VHVQGQEPLT++
Sbjct: 498 AATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQ--QPA------VHVQGQEPLTAS 549
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+
Sbjct: 550 MLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVD 609
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAHQAK+AA K
Sbjct: 610 EAVAVLQAHQAKEAAQK 626
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ++ +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKRVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|126342235|ref|XP_001367420.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 635
Score = 273 bits (697), Expect = 9e-71, Method: Compositional matrix adjust.
Identities = 177/328 (53%), Positives = 210/328 (64%), Gaps = 56/328 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GR+KGFGFVCFSSPEEATKAVTEMNGRI+ +KPLY+ALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRNKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYIALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R L +QP S GYF+ +PQ Q +Y +QM +RP PRW +
Sbjct: 386 MASIRAVPNPVLNPYQPPS--GYFMTAIPQTQNRPAYYPASQMAPLRPSPRWTS------ 437
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
G F N+P R +A R G S RP++ Q RG G Q +S
Sbjct: 438 QGARPHPFQNLPGAIRPAASRPPFG---------SMRPMSSQL----RGVGASQRIANSS 484
Query: 174 VSAAGR--------------QTGGYNKYP--VRNP----GTQPQAQIGGIQPAAAGVQAV 213
A G + G KY VRNP QPQA++ QPA V
Sbjct: 485 TQALGLPPGASAGAAGAPGVRMGPQYKYAAGVRNPQQHVNIQPQARVQ--QPA------V 536
Query: 214 HVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYML 273
HVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+ML
Sbjct: 537 HVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHML 596
Query: 274 EHNESLKSKVEEAVAVLQAHQAKQAAVK 301
E ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 597 ESPESLRSKVDEAVAVLQAHQAKEAAQK 624
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGTSKGFGFVNFERHEDAQKAVEEMNGKELNGKKIYVGRAQKKGERQTELKRKFEQ 282
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDEHGSKGYGFVHFETRDAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|147899475|ref|NP_001085069.1| polyadenylate-binding protein 1-B [Xenopus laevis]
gi|82236793|sp|Q6IP09.1|PABPB_XENLA RecName: Full=Polyadenylate-binding protein 1-B; Short=PABP-1-B;
Short=Poly(A)-binding protein 1-B; Short=xPABP1-B;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-B
gi|47940242|gb|AAH72110.1| MGC79060 protein [Xenopus laevis]
gi|80476254|gb|AAI08463.1| MGC79060 protein [Xenopus laevis]
Length = 633
Score = 273 bits (697), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 170/316 (53%), Positives = 204/316 (64%), Gaps = 33/316 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQ-MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA------- 109
+A++R+ + +QP + YF+ +P Q +Y P Q+ Q+RP PRW A
Sbjct: 386 MASVRVPNPVINPYQPPPSS-YFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARPHP 444
Query: 110 ----APQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGP 165
A +RPS F + PR + Q V AN T TMGPR
Sbjct: 445 FQNMAGAIRPSAPRPPTFSTMRPTSQVPRVMSAQRV---AN------TSTQTMGPRPTTA 495
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A A + + + ++ TQPQ + QPA VHVQGQEPLT++M
Sbjct: 496 AAAATSAVRTVPQYKYAAGVRNTQQHLNTQPQVAMQ--QPA------VHVQGQEPLTASM 547
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 548 LAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 607
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 608 AVAVLQAHQAKEAAQK 623
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M++D G+S+GFGFV F E+A KAV +MNG+ + K ++V AQ+K +R+ L ++ Q
Sbjct: 223 MTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQ 282
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ +F
Sbjct: 190 FTNVYIKNFGEDMDDERLKEWF 211
>gi|326917956|ref|XP_003205259.1| PREDICTED: polyadenylate-binding protein 1-like [Meleagris
gallopavo]
Length = 652
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 173/317 (54%), Positives = 210/317 (66%), Gaps = 32/317 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 341 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 400
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQI-RPQPRWAAAPQMR 114
+A++R + +QP GYF+ +PQ Q +Y Q+ Q+ RP PRW A
Sbjct: 401 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTA----- 455
Query: 115 PSGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGG 164
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 456 -QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAA 512
Query: 165 PMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
A PA + + + P ++ TQPQ + QPA VHVQGQEPLT++
Sbjct: 513 AATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQVAMQ--QPA------VHVQGQEPLTAS 564
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+
Sbjct: 565 MLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVD 624
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAHQAK+AA K
Sbjct: 625 EAVAVLQAHQAKEAAQK 641
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 240 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 297
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 146 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 204
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 205 FTNVYIKNFGE 215
>gi|224046575|ref|XP_002200268.1| PREDICTED: polyadenylate-binding protein 1 [Taeniopygia guttata]
Length = 637
Score = 272 bits (696), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 173/317 (54%), Positives = 210/317 (66%), Gaps = 32/317 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQI-RPQPRWAAAPQMR 114
+A++R + +QP GYF+ +PQ Q +Y Q+ Q+ RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTA----- 440
Query: 115 PSGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGG 164
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 441 -QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAA 497
Query: 165 PMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
A PA + + + P ++ TQPQ + QPA VHVQGQEPLT++
Sbjct: 498 AATAATPAVRTVPQYKYAAGVRNPQQHLNTQPQ--VAMQQPA------VHVQGQEPLTAS 549
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+
Sbjct: 550 MLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVD 609
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAHQAK+AA K
Sbjct: 610 EAVAVLQAHQAKEAAQK 626
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|195150897|ref|XP_002016387.1| GL11548 [Drosophila persimilis]
gi|194110234|gb|EDW32277.1| GL11548 [Drosophila persimilis]
Length = 640
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 167/332 (50%), Positives = 205/332 (61%), Gaps = 47/332 (14%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF SP EAT AVTE+NGR+IGSKPLYVALAQRKE+RKAHLASQYM+ +
Sbjct: 321 DEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAHLASQYMRHM 380
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
MRMQQ+GQ+FQP +TGG+FVPT+P QRF+GP TQ+R PRW APQ+RP+ T Q
Sbjct: 381 TGMRMQQLGQMFQPNTTGGFFVPTIPPSQRFFGPQMTTQMRNAPRW--APQVRPAA-TVQ 437
Query: 122 GF----------------PNIP-QFRSA--------PRASTGQTVIRGA-------NMSA 149
+P QFRSA P+ G A N A
Sbjct: 438 SVQAGAAAAAAGGFQGAAGAVPTQFRSAAAGARGAQPQQVQGTHAAAAAAAANNMRNTGA 497
Query: 150 RPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAA 207
R ITGQ T P A ++ +Q KY +RNP Q Q +
Sbjct: 498 RAITGQQT----AAAPNLQIAGAQIAGGAQQRAPSYKYTSNMRNPPVQQMQQAQPMPQQL 553
Query: 208 AGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNA 267
G + E L +++LA A PQEQKQ+LGERL+P+I+RM+ LAGKITGMLLEI+N+
Sbjct: 554 QG------KNSEKLIASLLANANPQEQKQILGERLYPMIERMHAALAGKITGMLLEIENS 607
Query: 268 ELLYMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
ELL+MLE E+LK+KVEEAVAVLQ H+ + A
Sbjct: 608 ELLHMLEDKEALKAKVEEAVAVLQVHRVSEPA 639
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIG-SKPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV + + E A AV +NG+ +G SK LYVA AQ+K +R+ L ++
Sbjct: 218 EDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLYVARAQKKAERQQELKRKF 273
Score = 44.3 bits (103), Expect = 0.069, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G SKG+GFV F + E A ++ +NG ++ K +YV +++R+ L + +
Sbjct: 123 IDEKGNSKGYGFVHFETEEAANTSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKL 181
Query: 61 IANMRMQQMGQLFQPGSTGGYFVP 84
N+ ++ + F +F P
Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEP 205
>gi|125808454|ref|XP_001360757.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
gi|54635929|gb|EAL25332.1| GA18673 [Drosophila pseudoobscura pseudoobscura]
Length = 640
Score = 272 bits (695), Expect = 1e-70, Method: Compositional matrix adjust.
Identities = 167/332 (50%), Positives = 205/332 (61%), Gaps = 47/332 (14%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF SP EAT AVTE+NGR+IGSKPLYVALAQRKE+RKAHLASQYM+ +
Sbjct: 321 DEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAHLASQYMRHM 380
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
MRMQQ+GQ+FQP +TGG+FVPT+P QRF+GP TQ+R PRW APQ+RP+ T Q
Sbjct: 381 TGMRMQQLGQMFQPNTTGGFFVPTIPPSQRFFGPQMTTQMRNAPRW--APQVRPAA-TVQ 437
Query: 122 GF----------------PNIP-QFRSA--------PRASTGQTVIRGA-------NMSA 149
+P QFRSA P+ G A N A
Sbjct: 438 SVQAGAAAAAAGGFQGAAGAVPTQFRSAAAGARGAQPQQVQGTHAAAAAAAANNMRNTGA 497
Query: 150 RPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAA 207
R ITGQ T P A ++ +Q KY +RNP Q Q +
Sbjct: 498 RAITGQQT----AAAPNLQIAGAQIAGGAQQRAPSYKYTSNMRNPPVQQMQQAQPMPQQL 553
Query: 208 AGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNA 267
G + E L +++LA A PQEQKQ+LGERL+P+I+RM+ LAGKITGMLLEI+N+
Sbjct: 554 QG------KNSEKLIASLLANANPQEQKQILGERLYPMIERMHAALAGKITGMLLEIENS 607
Query: 268 ELLYMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
ELL+MLE E+LK+KVEEAVAVLQ H+ + A
Sbjct: 608 ELLHMLEDKEALKAKVEEAVAVLQVHRVSEPA 639
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 39/56 (69%), Gaps = 1/56 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIG-SKPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV + + E A AV +NG+ +G SK LYVA AQ+K +R+ L ++
Sbjct: 218 EDGKSKGFGFVAYETTEAAEAAVQALNGKDMGESKSLYVARAQKKAERQQELKRKF 273
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 42/84 (50%), Gaps = 1/84 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G SKG+GFV F + E A ++ +NG ++ K +YV +++R+ L + +
Sbjct: 123 IDEKGNSKGYGFVHFETEEAANMSIDRVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKL 181
Query: 61 IANMRMQQMGQLFQPGSTGGYFVP 84
N+ ++ + F +F P
Sbjct: 182 FTNVYVKNFTEDFDDEKLKEFFEP 205
>gi|194753367|ref|XP_001958985.1| GF12652 [Drosophila ananassae]
gi|190620283|gb|EDV35807.1| GF12652 [Drosophila ananassae]
Length = 639
Score = 272 bits (695), Expect = 2e-70, Method: Compositional matrix adjust.
Identities = 165/333 (49%), Positives = 209/333 (62%), Gaps = 50/333 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF S EAT AVTE+NGR++GSKPLYVALAQRKE+RKAHLASQYM+ +
Sbjct: 321 DEEGRSKGFGFVCFISANEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
MRMQQ+GQ+F P + GG+FVPT+P QRF+GP T +R PRWA +RP+ T Q
Sbjct: 381 TGMRMQQLGQIFPPNAAGGFFVPTMPPNQRFFGPQMTTPMRNTPRWATP--VRPAA-TVQ 437
Query: 122 GF----------------PNIP-QFRSAPRASTG--QTVIRGA------------NMSAR 150
+P QFRSA + G ++G N AR
Sbjct: 438 SVQAGAAAAAAGGFQGAAGAVPTQFRSAAAGARGGQSQQVQGTHAAAAAAANNMRNTGAR 497
Query: 151 PITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQ--PQAQIGGIQPA 206
ITGQ T+ MQ G A ++ +Q KY +RNP Q PQA QP
Sbjct: 498 AITGQQTVAAPN---MQIAG-AQIAGGAQQRASNYKYTSNMRNPPVQQMPQA-----QPM 548
Query: 207 AAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDN 266
+Q + E L +++LA A+PQEQKQ+LGERL+P+I+RM+P LAGKITGMLLEI+N
Sbjct: 549 PPQLQG---KNSEKLIASLLANAKPQEQKQILGERLYPMIERMHPSLAGKITGMLLEIEN 605
Query: 267 AELLYMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
+ELL+M+E E+LK+KVEEAVAVLQ H+ + A
Sbjct: 606 SELLHMIEDQEALKAKVEEAVAVLQVHRVAEPA 638
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV F + E A AV +NG+ +G K LYVA AQ+K +R+ L ++
Sbjct: 218 EDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKF 273
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 21/83 (25%), Positives = 41/83 (49%), Gaps = 1/83 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E SKG+GFV F + E A ++ ++NG ++ K +YV +++R+ L + +
Sbjct: 124 DEKANSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 182
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP 84
N+ ++ + F +F P
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEP 205
>gi|195123564|ref|XP_002006275.1| GI18654 [Drosophila mojavensis]
gi|193911343|gb|EDW10210.1| GI18654 [Drosophila mojavensis]
Length = 645
Score = 270 bits (691), Expect = 4e-70, Method: Compositional matrix adjust.
Identities = 168/336 (50%), Positives = 210/336 (62%), Gaps = 50/336 (14%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF SP EAT AVTE+NGR+IGSKPLYVALAQRKE+RKAHLASQYM+ +
Sbjct: 321 DEEGRSKGFGFVCFISPNEATCAVTELNGRVIGSKPLYVALAQRKEERKAHLASQYMRHM 380
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPS----- 116
MRMQQ+GQLF P + GG+FVPT+ QRF+GP T +R PRW A QMRP+
Sbjct: 381 TGMRMQQLGQLFPPNTAGGFFVPTMTPSQRFFGPQITTPMRSTPRW-AQQQMRPATAVQS 439
Query: 117 --------------GQTAQGFPNIP-QFRSAPRASTG-QTVIRGA-----------NMS- 148
G +P QFR + + G Q ++G NM
Sbjct: 440 VQAGAASAAGAAAVGGFQGAAGAVPTQFRQSGAGARGTQPQVQGTHAAAAAAAAANNMRS 499
Query: 149 --ARPITG-QSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGI 203
AR ITG QS P MQ G A ++ +Q KY +RNP P Q+
Sbjct: 500 SGARAITGQQSVAAPN----MQIAG-AQIAGGAQQRAASYKYTSNMRNP---PVQQMQQA 551
Query: 204 QPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLE 263
QP + +Q + QE L +++LA A+PQEQKQ+LGERL+P+I+RM+ LAGKITGMLLE
Sbjct: 552 QPLPSQLQG---KNQEKLIASLLANAKPQEQKQILGERLYPMIERMHATLAGKITGMLLE 608
Query: 264 IDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
I+N+ELL+MLE E+LK+KVEEAVAVLQ H+ + A
Sbjct: 609 IENSELLHMLEDQEALKAKVEEAVAVLQVHRVTEPA 644
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV + + E A AV +NG+ +G K LYVA AQ+K +R+ L ++
Sbjct: 218 EDGKSKGFGFVAYETTEAAEAAVQALNGKDMGDGKTLYVARAQKKAERQQELKRKF 273
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A ++ ++NG ++ K +YV +++R+ L + +
Sbjct: 124 DEKGTSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 182
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP 84
N+ ++ + F +F P
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEP 205
>gi|432881580|ref|XP_004073850.1| PREDICTED: polyadenylate-binding protein 1-like [Oryzias latipes]
Length = 631
Score = 270 bits (691), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 171/313 (54%), Positives = 202/313 (64%), Gaps = 30/313 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLITQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR--FYGPT--QMTQIRPQPRWAAAPQMR 114
+AN R + +QP G+ + +PQ Q Y PT QM Q+RP PRW +R
Sbjct: 386 VANARAAANPVMNPYQPAPPSGFIMTAIPQAQSRSAYYPTAGQMAQLRPGPRWTTQ-SVR 444
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
P Q F N+P PR A+ P+ + + GP P +
Sbjct: 445 P-----QHFQNMPGVMRPPRPRPQNFSTVRASSQVPPMMNTQRVAAQSSGPRH---PVAT 496
Query: 175 SAAGRQTGGYNKYP--VRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
+A + G KY VRNP TQPQ + QPA VH+QGQEPLT++MLAA
Sbjct: 497 AATHVRGGPQYKYSTGVRNPQQHVATQPQVTL---QPA------VHIQGQEPLTASMLAA 547
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A QEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVA
Sbjct: 548 APLQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVA 607
Query: 289 VLQAHQAKQAAVK 301
VLQAHQAK+ A K
Sbjct: 608 VLQAHQAKEVAQK 620
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G +GFGFV F + E+A KAV EMNG+ + + ++V AQ+K +R+ L ++ Q
Sbjct: 225 DESGGGRGFGFVSFENHEDAQKAVDEMNGKELNGRIMFVGRAQKKMERQMELKRRFEQ 282
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+G+GFV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSRGYGFVHFETHDAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-ARE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|114649018|ref|XP_001154541.1| PREDICTED: polyadenylate-binding protein 3 isoform 5 [Pan
troglodytes]
Length = 633
Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 172/317 (54%), Positives = 207/317 (65%), Gaps = 36/317 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP------ 111
+A++R Q GYF+ +PQ Q +Y P+Q+TQ+RP PRW A
Sbjct: 386 MASVRAVPN----QRAPPSGYFMTAVPQTQNHAAYYPPSQITQLRPSPRWTAQGARPHPF 441
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQA 168
Q +PS G P +P P +S V+ R AN S + T+GPR P A
Sbjct: 442 QNKPSA-IRPGAPRVPFSTMRPASSQIPRVMSTQRVANTSTQ------TVGPR---PAAA 491
Query: 169 PGPASVSAAGRQTGGYNKYP--VRNP--GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
A+ + +T KY VRNP Q Q+ QPA VHVQGQE LT++
Sbjct: 492 AAAAAAATPAVRTVARYKYAAGVRNPQQHLNAQPQVTMQQPA------VHVQGQETLTAS 545
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLYMLE ESL+SKV+
Sbjct: 546 RLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVD 605
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAHQAK+A K
Sbjct: 606 EAVAVLQAHQAKEATQK 622
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|82802751|gb|ABB92426.1| PABP3 [Pan troglodytes]
Length = 632
Score = 270 bits (689), Expect = 8e-70, Method: Compositional matrix adjust.
Identities = 172/317 (54%), Positives = 207/317 (65%), Gaps = 36/317 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP------ 111
+A++R Q GYF+ +PQ Q +Y P+Q+TQ+RP PRW A
Sbjct: 386 MASVRAVPN----QRAPPSGYFMTAVPQTQNHAAYYPPSQITQLRPSPRWTAQGARPHPF 441
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQA 168
Q +PS G P +P P +S V+ R AN S + T+GPR P A
Sbjct: 442 QNKPSA-IRPGAPRVPFSTMRPASSQIPRVMSTQRVANTSTQ------TVGPR---PAAA 491
Query: 169 PGPASVSAAGRQTGGYNKYP--VRNP--GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
A+ + +T KY VRNP Q Q+ QPA VHVQGQE LT++
Sbjct: 492 AAAAAAATPAVRTVARYKYAAGVRNPQQHLNAQPQVTMQQPA------VHVQGQETLTAS 545
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLYMLE ESL+SKV+
Sbjct: 546 RLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVD 605
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAHQAK+A K
Sbjct: 606 EAVAVLQAHQAKEATQK 622
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 43.9 bits (102), Expect = 0.079, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|94730404|sp|P20965.3|PABPA_XENLA RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein 1-A; Short=xPABP1-A;
AltName: Full=Cytoplasmic poly(A)-binding protein 1-A
gi|30353795|gb|AAH52100.1| Pabpc1 protein [Xenopus laevis]
Length = 633
Score = 270 bits (689), Expect = 9e-70, Method: Compositional matrix adjust.
Identities = 179/323 (55%), Positives = 211/323 (65%), Gaps = 47/323 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQ-MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPS 116
+A++R+ + +QP + YF+ +P Q +Y P Q+ Q+RP PRW A
Sbjct: 386 MASVRVPNPVINPYQPPPSS-YFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTA------Q 438
Query: 117 GQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN-----MSARPITGQST--MGPRGGGPMQ 167
G F N+P R +APR T T+ +N MSA+ + ST MGPR
Sbjct: 439 GARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRVMSAQRVANTSTQTMGPRPTTAAA 498
Query: 168 APG------PASVSAAGRQTGGYNKYPVRNP---GTQPQAQIGGIQPAAAGVQAVHVQGQ 218
A P AAG VRN TQPQ + QPA VHVQGQ
Sbjct: 499 AAASAVRAVPQYKYAAG----------VRNQQHLNTQPQVAMQ--QPA------VHVQGQ 540
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ES
Sbjct: 541 EPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES 600
Query: 279 LKSKVEEAVAVLQAHQAKQAAVK 301
L+SKV+EAVAVLQAHQAK+AA K
Sbjct: 601 LRSKVDEAVAVLQAHQAKEAAQK 623
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
++G+SKGFGFV F E+A KAV EMNG+ + K ++V AQ+K +R+ L ++ Q
Sbjct: 225 DDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|495594|gb|AAA70421.1| poly(A)-binding protein [Drosophila melanogaster]
Length = 632
Score = 269 bits (687), Expect = 1e-69, Method: Compositional matrix adjust.
Identities = 157/328 (47%), Positives = 199/328 (60%), Gaps = 45/328 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF+ EAT AVTE+NGR++GSKPLYVALAQRKE+RKA LASQYM+ +
Sbjct: 319 DEEGRSKGFGFVCFNPESEATCAVTELNGRVVGSKPLYVALAQRKEERKADLASQYMRHM 378
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
MRMQQ+GQ++QP + G+FVPTLP QRF+G TQ+R PRW PQ+RP
Sbjct: 379 TGMRMQQLGQIYQPNAASGFFVPTLPSNQRFFGSQVATQMRNTPRW--VPQVRPPAAIQG 436
Query: 122 GFPNI----------------------------PQFRSAPRASTGQTVIRGANMSARPIT 153
PQ + A+ +R N AR IT
Sbjct: 437 VQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMR--NTGARAIT 494
Query: 154 GQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQ 211
GQ T P MQ PG A ++T Y KY +RNP P Q+ QP +Q
Sbjct: 495 GQQTAAPN----MQIPGAQIAGGAQQRTSNY-KYTSNMRNP---PVPQLHQTQPIPQQLQ 546
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
+ E L +++LA A+PQEQKQ+LGERL+P+I+ M+ LAGKITGMLLEI+N+ELL+
Sbjct: 547 G---KNSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLH 603
Query: 272 MLEHNESLKSKVEEAVAVLQAHQAKQAA 299
M+E E+LK+KVEEAVAVLQ H+ + A
Sbjct: 604 MIEDQEALKAKVEEAVAVLQVHRVTEPA 631
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV F + E A AV +NG+ +G K LYVA AQ+K +R+ L ++
Sbjct: 216 EDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKF 271
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 28/89 (31%), Positives = 46/89 (51%), Gaps = 7/89 (7%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA-LAQRKED---RKAHLASQ- 56
E G SKG+GFV F + E A ++ ++NG ++ K +YV RKE KA L +
Sbjct: 124 DEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEQELGEKAKLFTNV 183
Query: 57 YMQRIA-NMRMQQMGQLFQP-GSTGGYFV 83
Y++ + +++ + F+P G Y V
Sbjct: 184 YVKNFTEDFDDEKLKEFFEPYGKITSYKV 212
>gi|343961833|dbj|BAK62504.1| polyadenylate-binding protein 3 [Pan troglodytes]
Length = 308
Score = 268 bits (685), Expect = 2e-69, Method: Compositional matrix adjust.
Identities = 172/317 (54%), Positives = 207/317 (65%), Gaps = 36/317 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 1 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 60
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA-----AP- 111
+A++R Q GYF+ +PQ Q +Y P+Q+TQ+RP PRW A P
Sbjct: 61 MASVR----AVPNQRAPPSGYFMTAVPQTQNHAAYYPPSQITQLRPSPRWTAQGARPHPF 116
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQA 168
Q +PS G P +P P +S V+ R AN S + T+GPR P A
Sbjct: 117 QNKPSA-IRPGAPRVPFSTMRPASSQIPRVMSTQRVANTSTQ------TVGPR---PAAA 166
Query: 169 PGPASVSAAGRQTGGYNKYP--VRNP--GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
A+ + +T KY VRNP Q Q+ QPA VHVQGQE LT++
Sbjct: 167 AAAAAAATPAVRTVARYKYAAGVRNPQQHLNAQPQVTMQQPA------VHVQGQETLTAS 220
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLE DN+ELLYMLE ESL+SKV+
Sbjct: 221 RLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLETDNSELLYMLESPESLRSKVD 280
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAHQAK+A K
Sbjct: 281 EAVAVLQAHQAKEATQK 297
>gi|194880963|ref|XP_001974622.1| GG21846 [Drosophila erecta]
gi|190657809|gb|EDV55022.1| GG21846 [Drosophila erecta]
Length = 635
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 158/329 (48%), Positives = 201/329 (61%), Gaps = 46/329 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF++ EAT AVTE+NGR++GSKPLYVALAQRKE+RKAHLASQYM+ +
Sbjct: 321 DEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
Query: 62 ANMRMQQMGQLFQPGS-TGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRP----- 115
MRMQQ+GQ+FQP + +GG+ VPT QRF+G TQ+R PRW PQ+RP
Sbjct: 381 TGMRMQQLGQIFQPNTASGGFLVPTFQSNQRFFGSQVATQMRNTPRW--VPQVRPPAAVQ 438
Query: 116 -----------------------SGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
A PQ + A+ +R N AR I
Sbjct: 439 GVQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMR--NTGARAI 496
Query: 153 TGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGV 210
TGQ T P MQ PG A ++T Y KY +RNP P Q+ QP +
Sbjct: 497 TGQQTAAPN----MQIPGAQIAGGAQQRTSNY-KYTSNMRNP---PAQQLHQTQPIPQQL 548
Query: 211 QAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELL 270
Q + E L +++LA A+PQEQKQ+LGERL+P+I+ M+ LAGKITGMLLEI+N+ELL
Sbjct: 549 QG---KNSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELL 605
Query: 271 YMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
+M+E E+LK+KVEEAVAVLQ H+ + A
Sbjct: 606 HMIEDQEALKAKVEEAVAVLQVHRVTEPA 634
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV F + E A AV +NG+ +G K LYVA AQ+K +R+ L ++
Sbjct: 218 EDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKF 273
Score = 44.3 bits (103), Expect = 0.065, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A ++ ++NG ++ K +YV +++R+ L + +
Sbjct: 124 DEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 182
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP 84
N+ ++ + F +F P
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEP 205
>gi|355754577|gb|EHH58478.1| hypothetical protein EGM_08341 [Macaca fascicularis]
Length = 637
Score = 267 bits (683), Expect = 4e-69, Method: Compositional matrix adjust.
Identities = 170/317 (53%), Positives = 200/317 (63%), Gaps = 32/317 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA-----A 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP P W A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYYPPSQIAQLRPSPCWTAQGARPH 445
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQ 167
P G P +P P +S V+ R AN S + T+GPR
Sbjct: 446 PFQNKPGGIRPAAPRLPFSTMRPTSSQVPRVMSTQRVANTSTQ------TVGPRPAAAAA 499
Query: 168 APGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQ-AVHVQGQEPLTST 224
A +V R KY VRNP AQ P Q AVHVQGQE LT++
Sbjct: 500 AAATPAVRTVPRY-----KYAAGVRNPQQHLNAQ-----PQVTMQQSAVHVQGQETLTAS 549
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
MLA+A PQEQKQMLGERLFP IQ M+P LAGKITGMLLEIDN+ELL+MLE ESL SKV+
Sbjct: 550 MLASAPPQEQKQMLGERLFPPIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVD 609
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAHQAK+A K
Sbjct: 610 EAVAVLQAHQAKEATQK 626
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|148232824|ref|NP_001080204.1| polyadenylate-binding protein 1-A [Xenopus laevis]
gi|623598|gb|AAA60936.1| poly(A)-binding protein [Xenopus laevis]
Length = 633
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 178/323 (55%), Positives = 210/323 (65%), Gaps = 47/323 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQ-MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPS 116
+A++R+ + +QP + YF+ +P Q +Y P Q+ Q+RP PRW A
Sbjct: 386 MASVRVPNPVINPYQPPPSS-YFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTA------Q 438
Query: 117 GQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN-----MSARPITGQST--MGPRGGGPMQ 167
G F N+P R +APR T T+ +N MSA+ + ST MGPR
Sbjct: 439 GARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRVMSAQRVANTSTQTMGPRPTTAAA 498
Query: 168 APG------PASVSAAGRQTGGYNKYPVRNP---GTQPQAQIGGIQPAAAGVQAVHVQGQ 218
A P AAG VRN TQPQ + QPA VHVQGQ
Sbjct: 499 AAASAVRAVPQYKYAAG----------VRNQQHLNTQPQVAMQ--QPA------VHVQGQ 540
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ES
Sbjct: 541 EPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES 600
Query: 279 LKSKVEEAVAVLQAHQAKQAAVK 301
L+ KV+EAVAVLQAHQAK+AA K
Sbjct: 601 LRLKVDEAVAVLQAHQAKEAAQK 623
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
++G+SKGFGFV F E+A KAV EM G+ + K ++V AQ+K +R+ L ++ Q
Sbjct: 225 DDNGKSKGFGFVSFERHEDAQKAVDEMYGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|64970|emb|CAA40721.1| polyA binding protein [Xenopus laevis]
Length = 633
Score = 267 bits (682), Expect = 5e-69, Method: Compositional matrix adjust.
Identities = 178/323 (55%), Positives = 210/323 (65%), Gaps = 47/323 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQ-MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPS 116
+A++R+ + +QP + YF+ +P Q +Y P Q+ Q+ P PRW A
Sbjct: 386 MASVRVPNPVINPYQPPPSS-YFMAAIPPAQNRAAYYPPGQIAQLSPSPRWTA------Q 438
Query: 117 GQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN-----MSARPITGQST--MGPRGGGPMQ 167
G F N+P R +APR T T+ +N MSA+ + ST MGPR
Sbjct: 439 GARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRVMSAQRVANTSTQTMGPRPTTAAA 498
Query: 168 APG------PASVSAAGRQTGGYNKYPVRNP---GTQPQAQIGGIQPAAAGVQAVHVQGQ 218
A P AAG VRN TQPQ + QPA VHVQGQ
Sbjct: 499 AAASAVRAVPQYKYAAG----------VRNQQHLNTQPQVAMQ--QPA------VHVQGQ 540
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ES
Sbjct: 541 EPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES 600
Query: 279 LKSKVEEAVAVLQAHQAKQAAVK 301
L+SKV+EAVAVLQAHQAK+AA K
Sbjct: 601 LRSKVDEAVAVLQAHQAKEAAQK 623
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
++G+SKGFGFV F E+A KAV EMNG+ + K ++V AQ+K +R+ L ++ Q
Sbjct: 225 DDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|410904819|ref|XP_003965889.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 636
Score = 266 bits (679), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 170/323 (52%), Positives = 201/323 (62%), Gaps = 44/323 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A +R L +QP GYF+ +PQ Q +Y Q+ Q+RP PRW
Sbjct: 386 MATVRAVPNPVLNPYQPAPPSGYFMAAIPQTQNRAAYYSANQLAQLRPSPRWTT------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGANMSARPITGQSTMGPRGGG----PMQAP 169
G Q F N+P R SAPR + RP + PR P Q
Sbjct: 440 QGVRPQHFQNMPGAMRPSAPRPQALNAI--------RPTAAGNAQVPRMMASQRMPAQTL 491
Query: 170 GPASVSAAGRQTGGYNKYP-------VRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQ 218
G + A+ P VRNP +QPQ + QPA V VQGQ
Sbjct: 492 GQRAAGASTTAAAPVRTMPQYKYAAGVRNPQQHMASQPQVPMQ--QPA------VLVQGQ 543
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLA+A PQEQKQMLGERLFPLIQ ++P LAGKITGMLLEIDN+ELL+MLE ES
Sbjct: 544 EPLTASMLASAPPQEQKQMLGERLFPLIQDVHPSLAGKITGMLLEIDNSELLHMLESPES 603
Query: 279 LKSKVEEAVAVLQAHQAKQAAVK 301
L+SK++EAVAVLQAHQAK+AA K
Sbjct: 604 LRSKMDEAVAVLQAHQAKEAAQK 626
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 1 MSEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M++DG +SKGFGFV F E+A KAV +MNG+ + + +YV AQ+K +R+ L ++ Q
Sbjct: 223 MTDDGGKSKGFGFVSFERHEDAQKAVDDMNGKELNGRQVYVGRAQKKGERQNELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-ARE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|402901594|ref|XP_003913731.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 636
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 163/313 (52%), Positives = 199/313 (63%), Gaps = 25/313 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKEDR+AHL ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEDRQAHLTNEYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA-----A 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP P W A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYYPPSQIAQLRPSPCWTAQGARPH 445
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQST--MGPRGGGPMQA 168
P G P +P P +S V MS + + ST +GPR A
Sbjct: 446 PFQNKPGAIRPAAPRVPFSTMRPTSSQVPRV-----MSTQYVANTSTQAVGPRPAAAAAA 500
Query: 169 PGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
PA S + P ++ QPQ + QPA VHVQGQ+ LT++MLA+
Sbjct: 501 ATPAVRSVPRYKYAEGVCNPQQHLNAQPQVTMQ--QPA------VHVQGQKTLTASMLAS 552
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A PQEQKQMLGERLFP IQ M+P LAGKITGMLLEIDN+ELL+MLE +SL+SKV+EAVA
Sbjct: 553 APPQEQKQMLGERLFPPIQAMHPTLAGKITGMLLEIDNSELLHMLESPQSLRSKVDEAVA 612
Query: 289 VLQAHQAKQAAVK 301
VLQAHQ K+A K
Sbjct: 613 VLQAHQVKEATQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 45/71 (63%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ ++
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK-VKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|431922543|gb|ELK19486.1| Polyadenylate-binding protein 4 [Pteropus alecto]
Length = 720
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 173/323 (53%), Positives = 196/323 (60%), Gaps = 48/323 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQP----QRFYGPTQMTQIRPQPRWAAAPQM 113
+A MR + FQP + GGYFVP +PQ Q Y + Q+ W +
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQASKECQVLYASLGLVQLFAI--WLQLVML 442
Query: 114 RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARP----------------ITGQST 157
RP A P R + ++V G S P +T
Sbjct: 443 RP--LVASLLP----LRESVSKLALRSVAWGGGRSECPDRLAMDFGGAGAAQQGLTDSCQ 496
Query: 158 MGPRGGGPMQ----APGPASVSAAGRQTGGYNKY--PVRNPGTQPQAQIGGIQPAAAGVQ 211
G GG P AP A +AA R Y KY VR+P P IQP A
Sbjct: 497 SG--GGVPTAVQNLAPRTAVATAAPRAVAPY-KYASSVRSP--HP-----AIQPLQAPQP 546
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+
Sbjct: 547 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 606
Query: 272 MLEHNESLKSKVEEAVAVLQAHQ 294
MLE ESL+SKV+EAVAVLQAH
Sbjct: 607 MLESPESLRSKVDEAVAVLQAHH 629
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEINGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|109120204|ref|XP_001091129.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Macaca
mulatta]
Length = 637
Score = 265 bits (678), Expect = 1e-68, Method: Compositional matrix adjust.
Identities = 168/317 (52%), Positives = 201/317 (63%), Gaps = 32/317 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNEYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA-----A 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP P W A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYYPPSQIAQLRPSPCWTAQGARPH 445
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQ 167
P G P +P P +S V+ R AN S + T+GPR
Sbjct: 446 PFQNKPGGIRPAAPRLPFSTMRPTSSQVPRVMSTQRVANTSTQ------TVGPRPAAAAA 499
Query: 168 APGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQ-AVHVQGQEPLTST 224
A +V R KY VRNP AQ P Q AVHVQGQE LT++
Sbjct: 500 AAATPAVRTVPRY-----KYAAGVRNPQQHLNAQ-----PQVTMQQSAVHVQGQETLTAS 549
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
MLA+A PQEQKQMLGERLFP IQ M+P LAGKITGMLLEIDN+ELL+MLE +SL+SKV+
Sbjct: 550 MLASAPPQEQKQMLGERLFPPIQAMHPTLAGKITGMLLEIDNSELLHMLESPQSLRSKVD 609
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAHQAK+A K
Sbjct: 610 EAVAVLQAHQAKEATQK 626
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|47219550|emb|CAG09904.1| unnamed protein product [Tetraodon nigroviridis]
Length = 623
Score = 265 bits (678), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 167/307 (54%), Positives = 185/307 (60%), Gaps = 23/307 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSG 117
IA MR + FQP T GYF+P +PQ
Sbjct: 386 IAGMRAMPANTIINQFQP--TSGYFMPAVPQXXXXXXXXXXXXXXXXXXXXXXXXXXXXX 443
Query: 118 QTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAA 177
Q + A S P TM PR M PGP +V
Sbjct: 444 XXXXXXXXXXXXXXXXXXXXTQRPLTAAPRS--PRASSQTMAPRPS--MGVPGPRNVPPY 499
Query: 178 GRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQ--AVHVQGQEPLTSTMLAAAQPQEQK 235
TG VRNP PQ +QP A AVHVQGQEPLT +MLAAA PQEQK
Sbjct: 500 KYATG------VRNPN--PQV----VQPIALQQTQPAVHVQGQEPLTPSMLAAAPPQEQK 547
Query: 236 QMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295
QMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE +ESL+SKVEEAVAVLQAHQA
Sbjct: 548 QMLGERLFPLIQAMHANLAGKITGMLLEIDNSELLHMLESHESLRSKVEEAVAVLQAHQA 607
Query: 296 KQAAVKK 302
K+ A +K
Sbjct: 608 KKDATQK 614
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 36/53 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G+S+GFGF+ + E+A KAV +MNG + K ++V AQ+K +R+A L ++
Sbjct: 228 GKSRGFGFISYEKHEDANKAVEDMNGTELNGKTVFVGRAQKKMERQAELKRKF 280
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|397482906|ref|XP_003812655.1| PREDICTED: polyadenylate-binding protein 3-like [Pan paniscus]
Length = 634
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 174/320 (54%), Positives = 207/320 (64%), Gaps = 41/320 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP------ 111
+A++R Q GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPN----QRAPPSGYFMTAVPQTQNHAAYYPPSQIAQLRPSPRWTAQGARPHPF 441
Query: 112 QMRPSGQTAQGFPNIP--QFRSA----PRASTGQTVIRGANMSARPITGQSTMGPRGGGP 165
Q +PS G P +P R A PR ++ Q V AN S + T+GPR
Sbjct: 442 QNKPSA-IRPGAPRVPFSTMRPASSQIPRVTSTQRV---ANTSTQ------TVGPRPAAA 491
Query: 166 MQAPGPASVSAAGRQTGGYNKYP--VRNP--GTQPQAQIGGIQPAAAGVQAVHVQGQEPL 221
A A+ A R Y KY VRNP Q Q+ QPA VHVQGQE L
Sbjct: 492 AAAAAAAATPAV-RTVPRY-KYAAGVRNPQQHLNAQPQVTMQQPA------VHVQGQETL 543
Query: 222 TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
T++ LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLYMLE ESL+S
Sbjct: 544 TASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRS 603
Query: 282 KVEEAVAVLQAHQAKQAAVK 301
KV+EAVAVLQAHQAK+A K
Sbjct: 604 KVDEAVAVLQAHQAKEATQK 623
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 44.3 bits (103), Expect = 0.075, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNGRKVFVGQFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|297274127|ref|XP_002800732.1| PREDICTED: polyadenylate-binding protein 1 [Macaca mulatta]
Length = 605
Score = 265 bits (677), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 168/317 (52%), Positives = 201/317 (63%), Gaps = 32/317 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL ++YMQR
Sbjct: 294 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNEYMQR 353
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA-----A 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP P W A
Sbjct: 354 MASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYYPPSQIAQLRPSPCWTAQGARPH 413
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQ 167
P G P +P P +S V+ R AN S + T+GPR
Sbjct: 414 PFQNKPGGIRPAAPRLPFSTMRPTSSQVPRVMSTQRVANTSTQ------TVGPRPAAAAA 467
Query: 168 APGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQ-AVHVQGQEPLTST 224
A +V R KY VRNP AQ P Q AVHVQGQE LT++
Sbjct: 468 AAATPAVRTVPRY-----KYAAGVRNPQQHLNAQ-----PQVTMQQSAVHVQGQETLTAS 517
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
MLA+A PQEQKQMLGERLFP IQ M+P LAGKITGMLLEIDN+ELL+MLE +SL+SKV+
Sbjct: 518 MLASAPPQEQKQMLGERLFPPIQAMHPTLAGKITGMLLEIDNSELLHMLESPQSLRSKVD 577
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAHQAK+A K
Sbjct: 578 EAVAVLQAHQAKEATQK 594
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 193 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKVERQTELKRKFEQ 250
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 99 VCDENGSKGYGFVHFETHEAAERAIEKMNGTLLNDRKVFVGRFKSRKEREAELGAK-AKE 157
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 158 FPNVYIKNFGE 168
>gi|410910966|ref|XP_003968961.1| PREDICTED: polyadenylate-binding protein 1-like [Takifugu rubripes]
Length = 635
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 175/324 (54%), Positives = 200/324 (61%), Gaps = 48/324 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MLEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR--FYGPT--QMTQIRPQPRW---AAAP 111
+A++R + +QP GYF+ +PQ Q Y P QM Q+RP PRW P
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMTAIPQAQNRGAYYPAAGQMAQLRPSPRWPTQGVRP 445
Query: 112 Q--------MRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGG 163
Q MR SG Q F ++ PR + Q V A MGPR
Sbjct: 446 QHFQNMQSAMRSSGPRPQMFGSMRPSSQLPRMTANQRVATQA------------MGPRTA 493
Query: 164 GPMQAPGPASVSAAGRQTGGYNKYP--VRNP----GTQPQAQIGGIQPAAAGVQAVHVQG 217
+ SV R Y KY VRN QPQ + QPA V VQG
Sbjct: 494 TTATSITANSV----RGVSQY-KYATGVRNTQQHVNAQPQVTVQ--QPA------VVVQG 540
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
QEPLT+TMLAAA EQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE E
Sbjct: 541 QEPLTTTMLAAAPLHEQKQMLGERLFPLIQAMHLSLAGKITGMLLEIDNSELLHMLESPE 600
Query: 278 SLKSKVEEAVAVLQAHQAKQAAVK 301
SL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 601 SLRSKVDEAVAVLQAHQAKEAAQK 624
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 43/60 (71%), Gaps = 1/60 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M++D G+S+GFGFV F E+A KAV EMNG+ + KP+YV AQ+K +R+A L ++ Q
Sbjct: 223 MTDDSGKSRGFGFVSFERHEDAQKAVDEMNGKEMNGKPIYVGRAQKKVERQAELKRKFEQ 282
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-ARE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|195381687|ref|XP_002049579.1| GJ21671 [Drosophila virilis]
gi|194144376|gb|EDW60772.1| GJ21671 [Drosophila virilis]
Length = 645
Score = 265 bits (676), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 164/339 (48%), Positives = 204/339 (60%), Gaps = 53/339 (15%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M++D GRSKGFGFVCF SP EAT AVTE+NGR++GSKPLYVALAQRKE+RKAHLASQYM+
Sbjct: 319 MTDDEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMR 378
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPS--- 116
+ MRMQQ+GQLFQP + G+FVPT+ QRF+GP TQ+R PRW A QMRP+
Sbjct: 379 HMTGMRMQQLGQLFQPNTASGFFVPTMAPSQRFFGPQMTTQMRSTPRW--AQQMRPATAV 436
Query: 117 ----------------GQTAQGFPNIP-QFRSAPRASTG-------------QTVIRGAN 146
G +P QFR + + G N
Sbjct: 437 QSVQAGAASAAASAAAGGFQGAAGAVPTQFRQSGAGARGAQPQQVQGTHAAAAAAAAANN 496
Query: 147 M---SARPITG-QSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQI 200
M AR ITG QS P MQ G A ++ +Q KY +RNP Q Q
Sbjct: 497 MRSSGARAITGQQSVAAPN----MQIAG-AQIAGGAQQRAASYKYTANMRNPPVQQMQQA 551
Query: 201 GGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGM 260
+ G + QE L +++LA A+PQE KQ+LGERL+P+I+RM+ LAGKITGM
Sbjct: 552 QPMPQQLQG------KNQEKLIASLLANAKPQEAKQILGERLYPMIERMHAALAGKITGM 605
Query: 261 LLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
LLEI+N+ELL+MLE E+LK+KVEEAVAVLQ H+ + A
Sbjct: 606 LLEIENSELLHMLEDQEALKAKVEEAVAVLQVHRVTEPA 644
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV + + E A AV +NG+ +G K LYVA AQ+K +R+ L ++
Sbjct: 218 EDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKF 273
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A ++ ++NG ++ K +YV +++R+ L + +
Sbjct: 124 DEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 182
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP 84
N+ ++ + F +F P
Sbjct: 183 TNVYVKNFTEEFDDEKLKEFFEP 205
>gi|57997079|emb|CAB66834.2| hypothetical protein [Homo sapiens]
Length = 631
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 168/319 (52%), Positives = 203/319 (63%), Gaps = 42/319 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP------ 111
+A++R Q GYF+ +PQ Q +Y P+Q+ ++RP PRW A
Sbjct: 386 MASVRAVPN----QRAPPSGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPF 441
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQA 168
Q +PS G P +P P +S V+ R AN S + T+GPR A
Sbjct: 442 QNKPSA-IRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQ------TVGPRPAAAAAA 494
Query: 169 PGPASVSAAGRQTGGYNKYP--VRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
+V R KY VRNP QPQ + + AVHVQGQE LT
Sbjct: 495 AATPAVRTVPRY-----KYAAGVRNPQQHRNAQPQVTMQQL--------AVHVQGQETLT 541
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++ LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLYMLE ESL+SK
Sbjct: 542 ASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSK 601
Query: 283 VEEAVAVLQAHQAKQAAVK 301
V+EAVAVLQAHQAK+A K
Sbjct: 602 VDEAVAVLQAHQAKEATQK 620
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 44.3 bits (103), Expect = 0.073, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|82802749|gb|ABB92425.1| PABP3 [Homo sapiens]
Length = 630
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 168/319 (52%), Positives = 203/319 (63%), Gaps = 42/319 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP------ 111
+A++R Q GYF+ +PQ Q +Y P+Q+ ++RP PRW A
Sbjct: 386 MASVRAVPN----QRAPPSGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPF 441
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQA 168
Q +PS G P +P P +S V+ R AN S + T+GPR A
Sbjct: 442 QNKPSA-IRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQ------TVGPRPAAAAAA 494
Query: 169 PGPASVSAAGRQTGGYNKYP--VRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
+V R KY VRNP QPQ + + AVHVQGQE LT
Sbjct: 495 AATPAVRTVPRY-----KYAAGVRNPQQHRNAQPQVTMQQL--------AVHVQGQETLT 541
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++ LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLYMLE ESL+SK
Sbjct: 542 ASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSK 601
Query: 283 VEEAVAVLQAHQAKQAAVK 301
V+EAVAVLQAHQAK+A K
Sbjct: 602 VDEAVAVLQAHQAKEATQK 620
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|45238849|ref|NP_112241.2| polyadenylate-binding protein 3 [Homo sapiens]
gi|28201852|sp|Q9H361.2|PABP3_HUMAN RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3; AltName:
Full=Testis-specific poly(A)-binding protein
gi|20379668|gb|AAH27617.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|119628765|gb|EAX08360.1| poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
gi|123982576|gb|ABM83029.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|123997243|gb|ABM86223.1| poly(A) binding protein, cytoplasmic 3 [synthetic construct]
gi|189055351|dbj|BAG36140.1| unnamed protein product [Homo sapiens]
Length = 631
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 168/319 (52%), Positives = 203/319 (63%), Gaps = 42/319 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP------ 111
+A++R Q GYF+ +PQ Q +Y P+Q+ ++RP PRW A
Sbjct: 386 MASVRAVPN----QRAPPSGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPF 441
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQA 168
Q +PS G P +P P +S V+ R AN S + T+GPR A
Sbjct: 442 QNKPSA-IRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQ------TVGPRPAAAAAA 494
Query: 169 PGPASVSAAGRQTGGYNKYP--VRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
+V R KY VRNP QPQ + + AVHVQGQE LT
Sbjct: 495 AATPAVRTVPRY-----KYAAGVRNPQQHRNAQPQVTMQQL--------AVHVQGQETLT 541
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++ LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLYMLE ESL+SK
Sbjct: 542 ASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSK 601
Query: 283 VEEAVAVLQAHQAKQAAVK 301
V+EAVAVLQAHQAK+A K
Sbjct: 602 VDEAVAVLQAHQAKEATQK 620
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|82802759|gb|ABB92430.1| PABP3 [Chlorocebus sabaeus]
Length = 635
Score = 264 bits (675), Expect = 3e-68, Method: Compositional matrix adjust.
Identities = 163/314 (51%), Positives = 200/314 (63%), Gaps = 27/314 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNEYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP P W A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYYPPSQIAQLRPSPCWTA------ 439
Query: 116 SGQTAQGFPNIPQ-FR-SAPRAS------TGQTVIRGANMSARPITGQSTMGPRGGGPMQ 167
G F N P R +APR T V R + T T+GPR
Sbjct: 440 QGARPHPFQNKPSAIRPAAPRVPFSTMRPTSSQVPRVMSTQRVANTSTQTVGPRPAAAAA 499
Query: 168 APGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
A PA + + + P ++ QPQ + QPA VHVQGQE LT++MLA
Sbjct: 500 AATPAVRTVPRYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQETLTASMLA 551
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
+A PQEQKQMLGERLF IQ M+P LAGKITGMLLEIDN+ELL+MLE ++SL+SKV+EAV
Sbjct: 552 SAPPQEQKQMLGERLFRPIQAMHPTLAGKITGMLLEIDNSELLHMLESSQSLRSKVDEAV 611
Query: 288 AVLQAHQAKQAAVK 301
AVLQAHQ K+A K
Sbjct: 612 AVLQAHQVKEATQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|395745189|ref|XP_002824146.2| PREDICTED: polyadenylate-binding protein 1-like isoform 2 [Pongo
abelii]
Length = 636
Score = 263 bits (673), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 170/319 (53%), Positives = 204/319 (63%), Gaps = 37/319 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP---- 111
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP P W A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAVPQTQNHAAYYPPSQIAQLRPSPCWTAQGARPH 445
Query: 112 --QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPM 166
Q +PS P +P P +S V+ R AN S + T+GPR
Sbjct: 446 PFQNKPSA-ICPAAPRVPFSTMRPASSQVPRVMSTQRVANTSTQ------TVGPRPAAAA 498
Query: 167 QAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQ--IGGIQPAAAGVQAVHVQGQEPLT 222
A PA R Y KY VRNP AQ + QPA VHVQGQE LT
Sbjct: 499 AAATPAV-----RTVPRY-KYAAGVRNPQQHLNAQPEVTMQQPA------VHVQGQETLT 546
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++MLA+A PQ+QKQMLGERLFPLI+ M P LAGKITGMLLEIDN+ELL+MLE ESL SK
Sbjct: 547 ASMLASAPPQKQKQMLGERLFPLIEAMRPTLAGKITGMLLEIDNSELLHMLESPESLGSK 606
Query: 283 VEEAVAVLQAHQAKQAAVK 301
V+EAVAVLQAHQAK+A K
Sbjct: 607 VDEAVAVLQAHQAKEATQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|195429537|ref|XP_002062815.1| GK19652 [Drosophila willistoni]
gi|194158900|gb|EDW73801.1| GK19652 [Drosophila willistoni]
Length = 638
Score = 263 bits (671), Expect = 9e-68, Method: Compositional matrix adjust.
Identities = 158/333 (47%), Positives = 202/333 (60%), Gaps = 51/333 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF SP EAT AVTE+NGR++GSKPLYVALAQRKE+RKAHLASQYM+ +
Sbjct: 321 DEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
MRMQQ+GQ+FQP +TGG++VPT+ QRF+ P TQ+R PRWA+ Q+RP+ T Q
Sbjct: 381 TGMRMQQLGQIFQPNTTGGFYVPTMAPGQRFFSPQIATQMRNAPRWAS--QVRPAA-TVQ 437
Query: 122 GFPNI-------------------------------PQFRSAPRASTGQTVIRGANMSAR 150
PQ + A+ N AR
Sbjct: 438 SVQAGAAAAAGGFQGAAGAVPAQFRQAAAGARGAQPPQVQGTHAAAAAAAANNMRNSGAR 497
Query: 151 PITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGG--IQPAAA 208
ITGQ ++ AP ++ AG Q G P R P + A + +Q
Sbjct: 498 AITGQQSVA--------AP---NMQIAGAQIAG--GAPQRAPSYKYTANMRNPPVQQMQQ 544
Query: 209 GVQAVHVQGQEP--LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDN 266
+QG+ P L +++LA A+PQEQKQ+LGERL+PLI+RM+ LAGKITGMLLEI+N
Sbjct: 545 AQPMPQLQGKNPEKLIASLLANAKPQEQKQILGERLYPLIERMHATLAGKITGMLLEIEN 604
Query: 267 AELLYMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
+ELL+MLE E+LK+KVEEAVAVLQ H+ + A
Sbjct: 605 SELLHMLEDQEALKAKVEEAVAVLQVHRVTEPA 637
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV F + E A AV +NG+ +G K LYVA AQ+K +R+ L ++
Sbjct: 218 EDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKF 273
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 22/84 (26%), Positives = 43/84 (51%), Gaps = 1/84 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G SKG+GFV F + E A ++ ++NG ++ K +YV +++R+ L + +
Sbjct: 123 LDEKGNSKGYGFVHFETEEAANTSIEKVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKL 181
Query: 61 IANMRMQQMGQLFQPGSTGGYFVP 84
N+ ++ + F +F P
Sbjct: 182 FTNVYVKNFTEEFDDEKLKDFFEP 205
>gi|195024447|ref|XP_001985876.1| GH21052 [Drosophila grimshawi]
gi|193901876|gb|EDW00743.1| GH21052 [Drosophila grimshawi]
Length = 645
Score = 263 bits (671), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 163/337 (48%), Positives = 203/337 (60%), Gaps = 52/337 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF SP EAT AVTE+NGR++GSKPLYVALAQRKE+RKAHLASQYM+ +
Sbjct: 321 DEEGRSKGFGFVCFISPNEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPS----- 116
MRMQQ+GQLFQP + G+FVPT+ QRF+GP Q+R PRW A Q+RP+
Sbjct: 381 TGMRMQQLGQLFQPNAASGFFVPTMAPSQRFFGPQMTPQMRNTPRW--AQQIRPATAVQS 438
Query: 117 --------------GQTAQGFPNIP-QFRSAPRASTG-------------QTVIRGANMS 148
G +P QFR + + G +NM
Sbjct: 439 VQAGAASAGASAAAGGFQGAAGAVPTQFRQSGTGARGAQPQQVQGTHAAAAAAAAASNMR 498
Query: 149 ---ARPITG-QSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGG 202
AR ITG QS P MQ G A ++T Y KY +RNP Q Q
Sbjct: 499 SSGARAITGQQSVAAPN----MQIAGAQIAGGAPQRTTTY-KYTANMRNPPVQQMQQAQP 553
Query: 203 IQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLL 262
+ G + QE L +++LA A+PQEQKQ+LGERL+P+I+RM+ LAGKITGMLL
Sbjct: 554 MPQQLQG------KNQEKLIASLLANAKPQEQKQILGERLYPMIERMHAALAGKITGMLL 607
Query: 263 EIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
EI+N+ELL+MLE E+LK+KVEEAVAVLQ H+ + A
Sbjct: 608 EIENSELLHMLEDQEALKAKVEEAVAVLQVHRVSEPA 644
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQY 57
+DG+SKGFGFV + + E A AV +NG+ +G K LYVA AQ+K +R+ L ++
Sbjct: 218 DDGKSKGFGFVAYETTEAAEAAVQALNGKDMGEGKTLYVARAQKKAERQQELKRKF 273
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 29/50 (58%), Gaps = 1/50 (2%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA-LAQRKEDRK 50
E G SKG+GFV F + E A ++ ++NG ++ K +YV RKE K
Sbjct: 124 DEKGHSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREK 173
>gi|82802753|gb|ABB92427.1| PABP3 [Gorilla gorilla]
Length = 630
Score = 262 bits (669), Expect = 1e-67, Method: Compositional matrix adjust.
Identities = 168/317 (52%), Positives = 201/317 (63%), Gaps = 38/317 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP------ 111
A++R Q GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 TASVRAVPN----QRAPPSGYFMAAVPQTQNHAAYYPPSQVAQLRPSPRWTAQGARPHPF 441
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQA 168
Q +PS G P +P P +S V+ R AN S + T+GPR A
Sbjct: 442 QNKPSA-IRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQ------TVGPRPAAAAAA 494
Query: 169 PGPASVSAAGRQTGGYNKYP--VRNP--GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
+V R KY VRNP Q Q+ QPA VHVQGQE LT++
Sbjct: 495 AATPAVRTVPRY-----KYAAGVRNPQQHLNAQPQVTMQQPA------VHVQGQETLTAS 543
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLYMLE ESL+SK +
Sbjct: 544 RLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKAD 603
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAH+AK+A K
Sbjct: 604 EAVAVLQAHEAKEATEK 620
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|391332716|ref|XP_003740776.1| PREDICTED: polyadenylate-binding protein 1-like [Metaseiulus
occidentalis]
Length = 660
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 166/319 (52%), Positives = 197/319 (61%), Gaps = 37/319 (11%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
S RSKGFGFVCFSSPEEATKAVTEMNGRII KPLYVALAQRKEDR+AHL+SQ++QR
Sbjct: 331 STGARSKGFGFVCFSSPEEATKAVTEMNGRIIVQKPLYVALAQRKEDRRAHLSSQFVQRF 390
Query: 62 ANMRMQQMGQL-FQPGSTGGYFVPTLPQPQRFYGPTQM-TQIRPQPRWAAAPQMRPSGQT 119
+R+ GQ+ F + + VP P+ F+ + +RPQ RWA Q+R SGQ
Sbjct: 391 TGVRVP-FGQMPFNHSTPTSFIVPASMHPRAFFASGNVANNVRPQ-RWAGGQQIRVSGQY 448
Query: 120 A------QGFPNIPQFRSAPR-----ASTGQTVIRGANMSA-RPIT---------GQSTM 158
A F+ APR + G R A MS+ RPIT G +
Sbjct: 449 AMAGGAPMATAAAANFQRAPRPTMQGQNAGVAAARNATMSSTRPITSTIHGAAGSGTQSR 508
Query: 159 GPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQ 218
G P QAP R T + VRN QP G A+ AV VQGQ
Sbjct: 509 NRVGVAPQQAPN-------SRPTFKFTN-SVRN--AQPSTPAGAAPMNAS--NAVLVQGQ 556
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT+ MLA A P++QKQMLGERLFPLI M+ +LAGKITGMLLEIDN+ELL+MLEH+ES
Sbjct: 557 EPLTTQMLAEACPRDQKQMLGERLFPLIYAMHADLAGKITGMLLEIDNSELLHMLEHSES 616
Query: 279 LKSKVEEAVAVLQAHQAKQ 297
L++KVEEAVAVLQAHQAK+
Sbjct: 617 LRAKVEEAVAVLQAHQAKE 635
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 45/66 (68%), Gaps = 5/66 (7%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQRIAN 63
G+S+GFGFV F +P+ A +AV E+N + +G+ K +YV AQ+K +R + L ++ Q
Sbjct: 229 GKSRGFGFVSFENPDNAEQAVKELNDKELGNGKKIYVGRAQKKAERLSDLKRKFEQ---- 284
Query: 64 MRMQQM 69
++M++M
Sbjct: 285 LKMERM 290
Score = 40.8 bits (94), Expect = 0.68, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G S+G+GFV F + E A +A+ ++NG ++ K ++V + +R+ + + +
Sbjct: 133 DEQGNSRGYGFVHFETEEAANEAINKVNGMLLNEKKVFVGKFVPRSERERMMGDK-ARLF 191
Query: 62 ANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ G F
Sbjct: 192 TNVYVKNFGEELDDGKLKEMF 212
>gi|73909065|gb|AAH45608.1| Poly(A) binding protein, cytoplasmic 3 [Homo sapiens]
Length = 631
Score = 261 bits (668), Expect = 2e-67, Method: Compositional matrix adjust.
Identities = 167/319 (52%), Positives = 202/319 (63%), Gaps = 42/319 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP------ 111
+A++R Q GYF+ + Q Q +Y P+Q+ ++RP PRW A
Sbjct: 386 MASVRAVPN----QRAPPSGYFMTAVTQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPF 441
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQA 168
Q +PS G P +P P +S V+ R AN S + T+GPR A
Sbjct: 442 QNKPSA-IRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQ------TVGPRPAAAAAA 494
Query: 169 PGPASVSAAGRQTGGYNKYP--VRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
+V R KY VRNP QPQ + + AVHVQGQE LT
Sbjct: 495 AATPAVRTVPRY-----KYAAGVRNPQQHRNAQPQVTMQQL--------AVHVQGQETLT 541
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++ LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLYMLE ESL+SK
Sbjct: 542 ASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSK 601
Query: 283 VEEAVAVLQAHQAKQAAVK 301
V+EAVAVLQAHQAK+A K
Sbjct: 602 VDEAVAVLQAHQAKEATQK 620
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|441613453|ref|XP_004088139.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 638
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 162/314 (51%), Positives = 198/314 (63%), Gaps = 27/314 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA-----A 110
A++ + +QP GYF+ +PQ Q +Y P+Q Q+RP P W A
Sbjct: 386 KASVPAVPNPVINPYQPAPPSGYFMAAVPQTQNHAAYYPPSQTAQLRPSPCWTAQGARPH 445
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQ 167
P G P +P P +S V+ R AN S + T+GPR
Sbjct: 446 PFQNKPGAIRPAAPRVPFNTMRPASSQVPRVMSPQRVANKSTK------TVGPRPAAAAA 499
Query: 168 APGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
A PA + + + P ++ QPQ ++ QPA VHVQGQE LT+ MLA
Sbjct: 500 AATPAVHTVPRYKYAAGVRNPQQHLNAQPQVKMQ--QPA------VHVQGQETLTAAMLA 551
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
+A P+EQKQMLGERLFPLIQ M+P LAGKITGMLLE DN+ELL+MLE ESL SKV+EAV
Sbjct: 552 SAPPKEQKQMLGERLFPLIQAMHPTLAGKITGMLLETDNSELLHMLESPESLCSKVDEAV 611
Query: 288 AVLQAHQAKQAAVK 301
VLQAHQAK+AA K
Sbjct: 612 VVLQAHQAKEAAQK 625
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKCKFEQ 282
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ---- 56
+ ++ SKG+GFV F + E A +A+ +MNG + + ++V + +++R+A L ++
Sbjct: 131 VCDENGSKGYGFVHFETREAAERAIEKMNGIPLNDRKVFVGRFKSRKEREAELGARAKEF 190
Query: 57 ---YMQRIA-NMRMQQMGQLFQPGSTGGYFVPTL 86
Y++ +M +++ LF G F PTL
Sbjct: 191 PNVYIKNFGEDMDDERLKDLF------GKFGPTL 218
>gi|82802761|gb|ABB92431.1| PABP3 [Aotus trivirgatus]
Length = 629
Score = 261 bits (667), Expect = 3e-67, Method: Compositional matrix adjust.
Identities = 170/317 (53%), Positives = 203/317 (64%), Gaps = 39/317 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP------ 111
+A++R Q GYF+ +PQ Q +Y P+Q+ ++RP PRW A
Sbjct: 386 MASVRAVPN----QRAPPSGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPF 441
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQA 168
Q +PS G P +P P +S V+ R AN S + T+GPR A
Sbjct: 442 QNKPSA-IRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQ------TVGPRPAAAAAA 494
Query: 169 PGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQ--IGGIQPAAAGVQAVHVQGQEPLTST 224
PA R Y KY VRNP AQ + QPA VHVQGQE LT++
Sbjct: 495 ATPAV-----RTVPRY-KYAAGVRNPQQHLNAQPEVTMQQPA------VHVQGQETLTAS 542
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
MLA+A PQ+QKQMLGERLFPLI+ M P LAGKITGMLLEIDN+ELL+MLE ESL SKV+
Sbjct: 543 MLASAPPQKQKQMLGERLFPLIEAMRPTLAGKITGMLLEIDNSELLHMLESPESLGSKVD 602
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAHQAK+A K
Sbjct: 603 EAVAVLQAHQAKEATQK 619
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|148227710|ref|NP_001085351.1| embryonic polyadenylate-binding protein B [Xenopus laevis]
gi|82236619|sp|Q6GR16.1|EPABB_XENLA RecName: Full=Embryonic polyadenylate-binding protein B;
Short=Embryonic poly(A)-binding protein B; Short=ePAB-B;
Short=ePABP-B; AltName: Full=XePABP-B
gi|49257242|gb|AAH71118.1| MGC81363 protein [Xenopus laevis]
Length = 629
Score = 261 bits (666), Expect = 4e-67, Method: Compositional matrix adjust.
Identities = 165/320 (51%), Positives = 205/320 (64%), Gaps = 42/320 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQPQR--FYGPTQMTQIRPQPRWAAAPQMRP 115
+A MR +G QP + YF+PT+PQP FY P + +RP P+WA+ Q RP
Sbjct: 386 LATMRAMPGPLLGSFQQPAN---YFLPTMPQPSNRAFYSPNPVAPVRPAPQWASH-QSRP 441
Query: 116 SGQTAQGFPNIPQFRSAP--RASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
Q P P R+ P R + + ++ A ST PR P+Q+ A+
Sbjct: 442 ----PQYQPPAPLMRAVPPRRMHSNISTMKQA----------STQVPRV--PLQSQRVAN 485
Query: 174 VSAAGRQTGG----YNKYPVRN-PGTQPQAQIGGIQPAAAGVQ-------AVHVQGQEPL 221
+ G QT G N +R P + + +QP + AV +QGQEPL
Sbjct: 486 I---GTQTAGARAQVNASIMRAMPHYKYSCGVRNVQPIGSSAHLQQVLEPAVLMQGQEPL 542
Query: 222 TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
T+++LAAA QEQKQ+LGER++PLI M+P LAGKITGMLLEIDN+ELL+MLE ESL S
Sbjct: 543 TASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHS 602
Query: 282 KVEEAVAVLQAHQAKQAAVK 301
KVEEAVAVLQAHQAK++A K
Sbjct: 603 KVEEAVAVLQAHQAKESAPK 622
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M GRS+GFGFV + + EEA KAVTEMNG+ + + +YV AQ++ +R+ L ++ Q
Sbjct: 224 MDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQ 282
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
S+G+GFV F + E A +A+ MNG ++ + ++V + + +R+ ++ M+ N+ +
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME-FTNVYI 195
Query: 67 QQMGQ 71
+ G+
Sbjct: 196 KNFGE 200
>gi|296226907|ref|XP_002759113.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1
[Callithrix jacchus]
Length = 604
Score = 260 bits (664), Expect = 7e-67, Method: Compositional matrix adjust.
Identities = 166/310 (53%), Positives = 201/310 (64%), Gaps = 35/310 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL + YMQR
Sbjct: 294 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNLYMQR 353
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP YF+ +PQ Q +Y P Q+ Q+RP PRW A
Sbjct: 354 MASVRAVPNPLINPYQPAPPSAYFMAAIPQTQNRAAYYPPRQIAQLRPSPRWTA------ 407
Query: 116 SGQTAQGFPNIP--QFRSAPRASTGQTVIRGAN------MSARPITGQSTMGPRGGGPMQ 167
G F N+P +APR + +R A+ MS + + ST + GP
Sbjct: 408 QGARPHPFQNMPGAIHPAAPRPPF--STMRPASSQVPRVMSTQRVADTST---QTKGPRP 462
Query: 168 APGPASVSAAGRQTGGYNKYPV--RNP--GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTS 223
A A+ + A R Y KY V RNP Q Q+ QPA VHVQGQEPLT+
Sbjct: 463 AAAAAAATPAVRTVPQY-KYAVGVRNPQQHLNAQPQVTMQQPA------VHVQGQEPLTA 515
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
+MLA+A PQEQKQMLGE LFPLIQ M+P LAGKITGMLLEIDN+ELL++LE ESL+SKV
Sbjct: 516 SMLASAPPQEQKQMLGEWLFPLIQAMHPSLAGKITGMLLEIDNSELLHILESPESLRSKV 575
Query: 284 EEAVAVLQAH 293
+EAVAVLQAH
Sbjct: 576 DEAVAVLQAH 585
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV MNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 193 DESGKSKGFGFVSFERHEDAQKAVDVMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 250
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ KG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 99 VCDENGPKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGPFKSRKEREAELGAR-AKE 157
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 158 FTNVYIKNFGE 168
>gi|426374960|ref|XP_004054321.1| PREDICTED: polyadenylate-binding protein 3 [Gorilla gorilla
gorilla]
Length = 631
Score = 259 bits (663), Expect = 8e-67, Method: Compositional matrix adjust.
Identities = 168/317 (52%), Positives = 200/317 (63%), Gaps = 38/317 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP------ 111
A++R Q GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 TASVRAVPN----QRAPPSGYFMAAVPQTQNHAAYYPPSQVAQLRPSPRWTAQGARPHPF 441
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQA 168
Q +PS G P +P P +S V+ R AN S + T+GPR A
Sbjct: 442 QNKPSA-IRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQ------TVGPRPAAAAAA 494
Query: 169 PGPASVSAAGRQTGGYNKYP--VRNP--GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
+V R KY VRNP Q Q+ QPA VHVQGQE LT++
Sbjct: 495 AATPAVRTVPRY-----KYAAGVRNPQQHLNAQPQVTMQQPA------VHVQGQETLTAS 543
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLYMLE ESL+SK
Sbjct: 544 RLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKAG 603
Query: 285 EAVAVLQAHQAKQAAVK 301
EAVAVLQAH+AK+A K
Sbjct: 604 EAVAVLQAHEAKEATEK 620
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|52346030|ref|NP_001005062.1| embryonic polyadenylate-binding protein [Xenopus (Silurana)
tropicalis]
gi|82235830|sp|Q6DEY7.1|EPAB_XENTR RecName: Full=Embryonic polyadenylate-binding protein;
Short=Embryonic poly(A)-binding protein; Short=ePABP
gi|49899948|gb|AAH76956.1| MGC89376 protein [Xenopus (Silurana) tropicalis]
Length = 629
Score = 259 bits (662), Expect = 1e-66, Method: Compositional matrix adjust.
Identities = 164/320 (51%), Positives = 199/320 (62%), Gaps = 42/320 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQP--QRFYGPTQMTQIRPQPRWAAAPQMRP 115
+A MR +G QP + YF+P +PQP + FY P + +R P+W + Q RP
Sbjct: 386 LATMRAMPGPLLGSFQQPAN---YFLPAMPQPPNRTFYSPNPVAPVRQAPQWTSH-QSRP 441
Query: 116 SGQTAQGFPNIPQFRSAP--RASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
Q P P R+ P R S+ + ++ A ST PR AP
Sbjct: 442 ----PQYQPPAPLMRAVPPRRMSSNISTMKQA----------STQVPR-----VAPHSQR 482
Query: 174 VSAAGRQTGG----YNKYPVRN-PGTQPQAQIGGIQPAAAGVQ-------AVHVQGQEPL 221
V+ G QT G N +R P + + +QP AV +QGQEPL
Sbjct: 483 VANIGTQTAGARAQVNPSIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAVLMQGQEPL 542
Query: 222 TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
T++ LA+A PQEQKQMLGERL+PLI M+P LAGKITGMLLEIDN+ELL+MLE ESL S
Sbjct: 543 TASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHS 602
Query: 282 KVEEAVAVLQAHQAKQAAVK 301
KVEEAVAVLQAHQAK+ + K
Sbjct: 603 KVEEAVAVLQAHQAKENSQK 622
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M + GRS+GFGFV + + EEA KAV+EMNG+ + + +YV AQ++ +R+ L ++ Q
Sbjct: 224 MDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQ 282
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+G+GFV F + E A +A+ MNG ++ + ++V + + +R+ ++ M+
Sbjct: 131 VCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME- 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|11610605|gb|AAG38953.1|AF132026_1 testis-specific poly(A)-binding protein [Homo sapiens]
Length = 631
Score = 258 bits (660), Expect = 2e-66, Method: Compositional matrix adjust.
Identities = 164/318 (51%), Positives = 199/318 (62%), Gaps = 40/318 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP------ 111
+A++R Q GYF+ +PQ Q +Y P+Q+ ++RP PRW A
Sbjct: 386 MASVRAVPN----QRAPPSGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPF 441
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPI-TGQSTMGPRGGGPMQ 167
Q +PS G P +P P +S V+ R AN S + + + P
Sbjct: 442 QNKPSA-IRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQTVGPRPAAARAAAATPAV 500
Query: 168 APGPASVSAAGRQTGGYNKYPVRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTS 223
P AAG VRNP QPQ + + AVHVQGQE LT+
Sbjct: 501 RTVPRYKYAAG----------VRNPQQHRNAQPQVTMQQL--------AVHVQGQETLTA 542
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
+ LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLYMLE ESL+SKV
Sbjct: 543 SRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKV 602
Query: 284 EEAVAVLQAHQAKQAAVK 301
+EAVAVLQAHQAK+A K
Sbjct: 603 DEAVAVLQAHQAKEATQK 620
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|289742137|gb|ADD19816.1| polyA-binding protein [Glossina morsitans morsitans]
Length = 653
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 162/339 (47%), Positives = 204/339 (60%), Gaps = 52/339 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
EDGRSKGFGFVCF +P EAT AVTEMNGR++GSKPLYVALAQRKEDRKAHLASQYM+ +
Sbjct: 321 DEDGRSKGFGFVCFVAPHEATCAVTEMNGRVVGSKPLYVALAQRKEDRKAHLASQYMRHM 380
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
A MRMQQ+GQ+FQP + G +FVPT+ QRF+GP T +R PRWAA Q+ + Q
Sbjct: 381 AGMRMQQIGQMFQPNTPGNFFVPTMGPGQRFFGPQVPTAMRNTPRWAA--QVPRAAAGVQ 438
Query: 122 GFPNIPQ------FRSAPRASTGQTVIRGANMS--------------------------- 148
G F++A A+TG + R N +
Sbjct: 439 GVAQSAAAATAGGFQNAAMAATGTSQYRPPNAAAAAAAAAARGQAPAVQGAHAAAAAANT 498
Query: 149 -----ARPITGQSTM---GPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQA 198
AR ITGQ T+ G A+ +AA +Q KY VRNP P
Sbjct: 499 MRGTGARAITGQQTIPAANMPMAGAPMPAAAAAAAAAAQQRPANYKYTTNVRNP---PVQ 555
Query: 199 QIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKIT 258
Q+ P V+ H +G E L ++MLA A PQEQKQ+LGERL+P+I+ +P +AGKIT
Sbjct: 556 QVQAPPP----VKQQHQKGPEKLLASMLANANPQEQKQILGERLYPIIELAHPNMAGKIT 611
Query: 259 GMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQ 297
GMLLEI+N+ELL+M+E E+LK+KVEEAVAVL H+ +
Sbjct: 612 GMLLEIENSELLHMIEDQEALKAKVEEAVAVLHMHRVTE 650
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%), Gaps = 1/58 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQY 57
+ EDG+SK FGFV F + E A AV +NG+ +G K LYVA AQ+K +R+ L ++
Sbjct: 216 IKEDGKSKCFGFVAFETTEAAEAAVEALNGKDMGDGKALYVARAQKKAERQQELKRKF 273
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ----- 56
+ G SKG+GFV F + E A A+ ++NG ++ K +YV +++R+ L +
Sbjct: 124 DDKGTSKGYGFVHFETEEAANNAIEKVNGMLLNGKKVYVGKFIPRKEREKDLGEKAKLFT 183
Query: 57 --YMQRIA-NMRMQQMGQLFQP 75
Y++ ++ +++ ++F P
Sbjct: 184 NVYVKNFGDDVDDEKLKEMFDP 205
>gi|148227542|ref|NP_001082094.1| embryonic polyadenylate-binding protein A [Xenopus laevis]
gi|94711253|sp|Q98SP8.2|EPABA_XENLA RecName: Full=Embryonic polyadenylate-binding protein A;
Short=Embryonic poly(A)-binding protein A; Short=ePAB-A;
Short=ePABP-A; AltName: Full=XePABP-A
gi|51258324|gb|AAH80020.1| EPAB protein [Xenopus laevis]
Length = 629
Score = 258 bits (658), Expect = 3e-66, Method: Compositional matrix adjust.
Identities = 159/308 (51%), Positives = 197/308 (63%), Gaps = 18/308 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQP--QRFYGPTQMTQIRPQPRWAAAPQMRP 115
+A MR +G QP + YF+ +PQP + FY P + +RP P+WA+ Q RP
Sbjct: 386 LATMRAMPGPLLGSFQQPAN---YFLSAMPQPPNRTFYSPNPVAPVRPAPQWASH-QSRP 441
Query: 116 SGQTAQGFPNIPQFRSAP--RASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
Q P P R+ R S+ + ++ A+ P Q + G A A
Sbjct: 442 ----PQYQPPTPLMRAVQPRRMSSNISTMKQASTQV-PRVAQHSQRVANIGTQTAGARAQ 496
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQE 233
V+ + +T + KY QP +Q AV +QGQEPLT+++LA A PQE
Sbjct: 497 VNPSMMRTMPHYKYSCGVRNVQPIVSSTHLQQVME--PAVLMQGQEPLTASLLAGAPPQE 554
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQMLGER++P+I M+P LAGKITGMLLEIDN+ELL+MLE ESL SKVEEAVAVLQAH
Sbjct: 555 QKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAH 614
Query: 294 QAKQAAVK 301
QAK+ A K
Sbjct: 615 QAKENAQK 622
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M + GRS+GFGFV + + EEA KAV+EMNG+ + + +YV AQ++ +R++ L ++ Q
Sbjct: 224 MDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQ 282
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+G+GFV F + E A +A+ MNG ++ + ++V + + +R+ ++ M+
Sbjct: 131 VCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME- 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|82802755|gb|ABB92428.1| PABP3 [Pongo pygmaeus]
Length = 635
Score = 256 bits (654), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 166/319 (52%), Positives = 201/319 (63%), Gaps = 37/319 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRS+GFGFVCFSSPEEATKAVTEMNG I+ +KPLYV+LA RKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSRGFGFVCFSSPEEATKAVTEMNGIIVATKPLYVSLAHRKEERQAYLTNEYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP---- 111
+A +R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP P W A
Sbjct: 386 MAGVRAVPNPVINPYQPAPPSGYFMAAVPQTQNHAAYYPPSQIAQLRPSPCWTAQGARPH 445
Query: 112 --QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPM 166
Q +PS P +P P +S V+ R AN S + T+GPR
Sbjct: 446 PFQNKPSA-ICPAAPRVPFSTMRPASSQVPRVMSTQRVANTSTQ------TVGPRPAAAA 498
Query: 167 QAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQ--IGGIQPAAAGVQAVHVQGQEPLT 222
A PA R Y KY VRNP AQ + QPA VHVQGQE LT
Sbjct: 499 AAATPAV-----RTVPRY-KYAAGVRNPQQHLNAQPEVTMQQPA------VHVQGQETLT 546
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++MLA+A PQ+QKQMLGERLFPLI+ M P LAGKITGMLLEIDN+ELL+MLE ESL SK
Sbjct: 547 ASMLASAPPQKQKQMLGERLFPLIEAMRPTLAGKITGMLLEIDNSELLHMLESPESLGSK 606
Query: 283 VEEAVAVLQAHQAKQAAVK 301
V+EAVAVLQAHQAK+A K
Sbjct: 607 VDEAVAVLQAHQAKEATQK 625
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFEKHEDAQKAVDEMNGKELSGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>gi|82802757|gb|ABB92429.1| PABP3 [Hylobates lar]
Length = 635
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 165/320 (51%), Positives = 198/320 (61%), Gaps = 39/320 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ ++PLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATEPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA-----A 110
A++ + +QP GYF+ +PQ Q ++ P+Q Q+RP P W A
Sbjct: 386 KASVPAVPNPVINPYQPAPPSGYFMAAVPQTQNRAAYHPPSQTAQLRPSPCWTAQGARPH 445
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQ 167
P G P +P P +S V+ R AN S + T+GPR
Sbjct: 446 PFQNKPGAIHPAAPRVPFNTMRPASSRVPRVMSPQRVANTSTK------TVGPRPAAAAA 499
Query: 168 APGPASVSAAGRQTGGYNKYPV--RNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEPL 221
A PA T KY V RNP QPQ ++ QPA VHVQGQE L
Sbjct: 500 AATPAV------HTVPRYKYAVGVRNPQQHLNAQPQVKMQ--QPA------VHVQGQETL 545
Query: 222 TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
T+ MLA+A P+EQKQMLGERLFPLIQ M+P LAGKITGMLLE DN+ELL+MLE ESL S
Sbjct: 546 TAAMLASAPPKEQKQMLGERLFPLIQAMHPTLAGKITGMLLETDNSELLHMLESPESLCS 605
Query: 282 KVEEAVAVLQAHQAKQAAVK 301
KV+EAV VLQAHQAK+A K
Sbjct: 606 KVDEAVVVLQAHQAKEATQK 625
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DQSGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 50/94 (53%), Gaps = 14/94 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ---- 56
+ ++ SKG+GFV F + E A +A+ +MNG + ++V + +++R+A L ++
Sbjct: 131 VCDENGSKGYGFVHFGTREAAERAIEKMNGIPLNDCKVFVGRFKSRKEREAELGARAKEF 190
Query: 57 ---YMQRIA-NMRMQQMGQLFQPGSTGGYFVPTL 86
Y++ +M +++ LF G F PTL
Sbjct: 191 PNVYIKNFGEDMDDERLKDLF------GKFGPTL 218
>gi|74137801|dbj|BAE24074.1| unnamed protein product [Mus musculus]
Length = 550
Score = 256 bits (653), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 165/324 (50%), Positives = 198/324 (61%), Gaps = 31/324 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCF S EEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQ
Sbjct: 227 MLEDGRSKGFGFVCFPSREEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQH 286
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A +R G + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP P W
Sbjct: 287 VAGLRALPAGAILNQFQPAA-GGYFVPEVPQAQGRPPYYTPNQLAQMRPNPCWQ------ 339
Query: 115 PSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSAR---PITGQST---------MGP 160
G QGF +P +S P + G G ++R I Q M
Sbjct: 340 -QGGRLQGFQGMPSALRQSGPGPALGHLAPTGNAPASRGLPTIIAQRVRSECPDRLAMDF 398
Query: 161 RGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVH--VQGQ 218
G G Q S + G T N P + + A++ V++ H +Q Q
Sbjct: 399 GGAGAAQQGLTDSCQSGGVPTARPNLAPPATVAATAPRAVAPYKYASS-VRSPHPTIQRQ 457
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA+PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEI N+ELL+MLE ES
Sbjct: 458 EPLTASMLAAARPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIGNSELLHMLETPES 517
Query: 279 LKSKVEEAVAVLQAHQAKQAAVKK 302
L SKV+EAVAVLQ H AK+ A +K
Sbjct: 518 LCSKVDEAVAVLQEHHAKKEAAQK 541
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+S+GFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 129 GKSRGFGFVSYEKHEDANKAVDEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQ 183
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 32 VCDENGSKGYAFVHFETQEAADKAIEKMNGLLLNDRKVFVGRFKSRKEREAELGAK-AKE 90
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ G+ F
Sbjct: 91 FTNVYIKNFGEEVDDGNLKELF 112
>gi|296203566|ref|XP_002748951.1| PREDICTED: polyadenylate-binding protein 1 isoform 2 [Callithrix
jacchus]
Length = 604
Score = 255 bits (652), Expect = 2e-65, Method: Compositional matrix adjust.
Identities = 166/316 (52%), Positives = 206/316 (65%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNG+I+ +KPLYVALAQRKE+R+AHL +++M R
Sbjct: 294 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLTNEHMHR 353
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQRFYG---PTQMTQIRPQPRWAAAPQMRP 115
A++R + +QP GYF+ LPQ Q +Q+TQ+RP PRW A P +RP
Sbjct: 354 TASVRAVPNPASKPYQPAPPSGYFMAALPQTQNSAACSPASQITQLRPSPRWTA-PSVRP 412
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQS--TMGPRGGGP 165
F N+P R +APR + +R A+ MS + I S T+GPR
Sbjct: 413 -----HPFQNMPGAIRPAAPRPPF--STMRPASSQVSRVMSTQCIANTSAQTVGPRPAAA 465
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA +A + + P ++ QPQ + QPA +HVQGQE LT +M
Sbjct: 466 AAAATPAVHTALRFKYAAGVRNPQQHFRAQPQVTMQ--QPA------IHVQGQEALTVSM 517
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
L +A PQ+QKQMLGERLFPLIQ P LAGKITGMLLE+DN+ELL+MLE ESL+SKV+E
Sbjct: 518 LVSAAPQQQKQMLGERLFPLIQARRPTLAGKITGMLLEMDNSELLHMLESPESLRSKVDE 577
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 578 AVAVLQAHQAKEAAQK 593
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV E+NG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 193 DERGKSKGFGFVSFERGEDAQKAVDELNGKELSGKQIYVGRAQKKVERQTELKRKFEQ 250
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 26/94 (27%), Positives = 51/94 (54%), Gaps = 14/94 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ---- 56
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++
Sbjct: 99 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDQKVFVGRFKSRKEREAELGARAKEF 158
Query: 57 ---YMQRIA-NMRMQQMGQLFQPGSTGGYFVPTL 86
Y++ +M + + LF G F PTL
Sbjct: 159 TNVYVKNFGEDMDDEHLKDLF------GKFGPTL 186
>gi|13540314|gb|AAK29408.1|AF338225_1 embryonic poly(A) binding protein [Xenopus laevis]
Length = 629
Score = 254 bits (649), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 158/308 (51%), Positives = 196/308 (63%), Gaps = 18/308 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQP--QRFYGPTQMTQIRPQPRWAAAPQMRP 115
+A MR +G QP + YF+ +PQP + FY P + +RP P+WA+ Q RP
Sbjct: 386 LATMRAMPGPLLGSFQQPAN---YFLSAMPQPPNRTFYSPNPVAPVRPAPQWASH-QSRP 441
Query: 116 SGQTAQGFPNIPQFRSAP--RASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
Q P P R+ R S+ + ++ A+ P Q + G A A
Sbjct: 442 ----PQYQPPTPLMRAVQPRRMSSNISTMKQASTQV-PRVAQHSQRVANIGTQTAGARAQ 496
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQE 233
V+ + +T + KY QP +Q AV +QGQEPLT+++LA A QE
Sbjct: 497 VNPSMMRTMPHYKYSCGVRNVQPIVSSTHLQQVME--PAVLMQGQEPLTASLLAGAPLQE 554
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQMLGER++P+I M+P LAGKITGMLLEIDN+ELL+MLE ESL SKVEEAVAVLQAH
Sbjct: 555 QKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAH 614
Query: 294 QAKQAAVK 301
QAK+ A K
Sbjct: 615 QAKENAQK 622
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M + GRS+GFGFV + + EEA KAV+EMNG+ + + +YV AQ++ +R++ L ++ Q
Sbjct: 224 MDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQ 282
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+G+GFV F + E A +A+ MNG ++ + ++V + + +R+ ++ M+
Sbjct: 131 VCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME- 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|327271804|ref|XP_003220677.1| PREDICTED: embryonic polyadenylate-binding protein-like [Anolis
carolinensis]
Length = 635
Score = 253 bits (647), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 158/322 (49%), Positives = 194/322 (60%), Gaps = 41/322 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ--MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRW-------- 107
+A +R + FQP GYFVP++PQPQ +Y + + +RP PRW
Sbjct: 386 LATLRTLPGPLFCSFQPPP--GYFVPSIPQPQPRTPYYNASPVAPVRPAPRWNGQHSRPP 443
Query: 108 ----AAAPQMRPSGQTAQGFPNIPQFRSA----PRASTGQTVIRGANMSARPITGQSTMG 159
A P +R + + NI R A PR R AN+ + ++
Sbjct: 444 SSYHTATPVLRTNAPPRRILNNISTMRQASTQVPRVPPNAQ--RMANIGTQTVS------ 495
Query: 160 PRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQE 219
++AP P + S Q KY QP + I AVH+ GQE
Sbjct: 496 ------VRAPSPPTFSRGISQY----KYSSAVRNIQPLNAMPPIPMQQVVEPAVHIHGQE 545
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
PLT++MLAAA PQEQKQ+LGERL+PLI M+P LAGKITGMLLEIDN+ELL MLE ESL
Sbjct: 546 PLTASMLAAAPPQEQKQILGERLYPLIHAMHPFLAGKITGMLLEIDNSELLLMLESPESL 605
Query: 280 KSKVEEAVAVLQAHQAKQAAVK 301
SK+EEAVAVLQ HQ +++ K
Sbjct: 606 HSKIEEAVAVLQVHQMSESSHK 627
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
GRSKGFGFV F ++A KAV +MNG+ I + LYV AQ++ +R++ L ++ Q
Sbjct: 228 GRSKGFGFVNFEKHQDAQKAVEDMNGKEINGRMLYVGRAQKRMERQSELKRKFEQ 282
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+G+GFV F + E A +A+ MNG ++ + ++V + + +R+A ++ M+
Sbjct: 131 VCDENGSRGYGFVHFETHEAANRAIATMNGMLLNDRKVFVGNFKSRREREAEYGAKAME- 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|198422109|ref|XP_002123332.1| PREDICTED: similar to poly A binding protein, cytoplasmic 1 b,
partial [Ciona intestinalis]
Length = 500
Score = 253 bits (646), Expect = 7e-65, Method: Compositional matrix adjust.
Identities = 167/308 (54%), Positives = 197/308 (63%), Gaps = 40/308 (12%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN-- 63
RS+GFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQR+EDRKAHL +QYMQR+ +
Sbjct: 184 RSRGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRREDRKAHLTAQYMQRMTSSM 243
Query: 64 -MRM----QQMGQLFQPGS-TGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSG 117
+RM Q +GQ FQ + GYF+P QR Y +Q+ IR PRW PQ
Sbjct: 244 GVRMATPNQMIGQPFQAAAGASGYFMP-FQGAQRTYMQSQI--IRTTPRWQHNPQ----- 295
Query: 118 QTAQGFPNIPQFRSA-PRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSA 176
GF RS PRA T + RP+ Q +G RG + P +
Sbjct: 296 ---GGFQMAGDMRSVGPRAPTTPAI--------RPMATQ--VGARG---VIHPQHQMMHQ 339
Query: 177 AGRQTGGYNKYP--VRNPG----TQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
Q + KY VRNP Q Q + QAVHVQGQEPLTS+MLA+AQ
Sbjct: 340 QAMQQPAF-KYTQGVRNPAMAGYPQSGQPQAQQQADQSLQQAVHVQGQEPLTSSMLASAQ 398
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
PQEQKQMLGERL+PLI++ +P+LA KITGMLLEIDN+ELL+MLE ESLK+KVEEAVAVL
Sbjct: 399 PQEQKQMLGERLYPLIEQSHPDLASKITGMLLEIDNSELLHMLESRESLKAKVEEAVAVL 458
Query: 291 QAHQAKQA 298
QAHQ K A
Sbjct: 459 QAHQVKVA 466
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/61 (47%), Positives = 37/61 (60%), Gaps = 5/61 (8%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII-----GSKPLYVALAQRKEDRKAHLASQYM 58
DG S+GFGFV + S EEA AV MNG+ I + LYV AQ+K++R+ L QY
Sbjct: 70 DGNSRGFGFVAYDSHEEAQAAVEAMNGQEIEGASGSTDILYVGRAQKKQERQQELRGQYE 129
Query: 59 Q 59
Q
Sbjct: 130 Q 130
>gi|47229361|emb|CAF99349.1| unnamed protein product [Tetraodon nigroviridis]
Length = 380
Score = 251 bits (642), Expect = 2e-64, Method: Compositional matrix adjust.
Identities = 163/307 (53%), Positives = 194/307 (63%), Gaps = 38/307 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 95 MLEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 154
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR--FYGPT--QMTQIRPQPRWAAAPQMR 114
+A++R + +QP GYF+ +PQ Q Y P QM Q+RP PRW
Sbjct: 155 MASVRAVPNPVINPYQPAPPSGYFMTAIPQTQNRGAYYPAAGQMAQLRPSPRWPT----- 209
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G Q F N+ +SA R+S + + G S RP + M QA GP +
Sbjct: 210 -QGVRPQHFQNM---QSAMRSSAPRPQMFG---SMRPSSQLPRMTSSQRVATQAMGPRAA 262
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
+ A T PVR +Q + GG QEPLT++MLAAA EQ
Sbjct: 263 TTAPSVTAN----PVRGV-SQYKYATGG---------------QEPLTTSMLAAAPLHEQ 302
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
KQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAVLQAHQ
Sbjct: 303 KQMLGERLFPLIQAMHLSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQ 362
Query: 295 AKQAAVK 301
AK+AA K
Sbjct: 363 AKEAAQK 369
>gi|432865704|ref|XP_004070572.1| PREDICTED: embryonic polyadenylate-binding protein-like [Oryzias
latipes]
Length = 624
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 157/308 (50%), Positives = 194/308 (62%), Gaps = 15/308 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G+SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQR+E+RKA L ++YMQR
Sbjct: 326 MTEAGQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+A +R + GY++ T+PQ + FY ++ +RP PRW PQ RP +
Sbjct: 386 MATLRTMP-SPIIDSYHQSGYYM-TVPQVRSFYNHNAVSNVRPIPRWPGQPQ-RPQDPYS 442
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQ 180
+I A R ST T ++ A+ A P ST G G A V AG
Sbjct: 443 S---HIVGGSFARRGSTTITTVKQASTQA-PRIIASTQKTNNIGTQTVGGRADV--AGVL 496
Query: 181 TGGYNKYP--VRNP---GTQPQAQIGG-IQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
G KY VRNP T P + P + VH+ G EPLT++MLAAA P +Q
Sbjct: 497 RSGQYKYSSAVRNPLHVVTVPAPMTRSQVVPVSMVEPPVHILGPEPLTASMLAAAPPMDQ 556
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
KQ+LG+RL+PLI P LAGKITGMLLEIDN+ELL+MLE ESLKSKV+EA+AVLQAHQ
Sbjct: 557 KQLLGDRLYPLILAQQPNLAGKITGMLLEIDNSELLHMLESPESLKSKVDEAIAVLQAHQ 616
Query: 295 AKQAAVKK 302
AK + KK
Sbjct: 617 AKDCSPKK 624
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E GRS+GFGFV ++ E+A KAV EMNG+ + K +YV AQ++ +R+ L ++ Q
Sbjct: 225 DEKGRSRGFGFVNYAHHEDAQKAVDEMNGKEMNGKIIYVGRAQKRLERQGELKRKFDQ 282
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
SKG+GFV F + E A +A+ MNG ++ + ++V + +++R+ ++ M + N+ +
Sbjct: 137 SKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGTKVM-KFTNIYI 195
Query: 67 QQMGQ 71
+ G
Sbjct: 196 KNFGD 200
>gi|348502707|ref|XP_003438909.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Oreochromis niloticus]
Length = 623
Score = 250 bits (639), Expect = 5e-64, Method: Compositional matrix adjust.
Identities = 152/314 (48%), Positives = 195/314 (62%), Gaps = 28/314 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M++ +SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQR+E+RKA L ++YMQR
Sbjct: 326 MTDGSQSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQP--QRFYGPTQMTQIRPQPRWAAAPQMRPSGQ 118
+A +R L GY+V TLPQP + FY + ++ +RP PRW P RP G
Sbjct: 386 LATLRTMA-SPLIDSYHQSGYYV-TLPQPPMRSFYNHSAVSSVRPVPRWTGQPP-RPQG- 441
Query: 119 TAQGFPNIPQFRSAP---RASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVS 175
P Q S R ST +R A+ A P ST G G ++
Sbjct: 442 -----PYTTQLVSGSVPRRGSTPIATVRQASTQA-PRIVTSTQKTNDIGTQTVGGRTDIA 495
Query: 176 AAGRQTGGYNKYPVRNPG---TQPQAQIGG----IQPAAAGVQAVHVQGQEPLTSTMLAA 228
+ R + VRNP T P + ++P VH+QG EPLT+++LAA
Sbjct: 496 SVARSSQYKYASAVRNPQQVVTVPAPMVHNDLQLMEPP------VHIQGPEPLTASVLAA 549
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A P +QKQ+LGERL+PLI ++P LAGKITGMLLEIDN+ELL+MLE ESL +KV+EA+A
Sbjct: 550 APPMDQKQLLGERLYPLIHALHPNLAGKITGMLLEIDNSELLHMLESQESLHAKVDEAIA 609
Query: 289 VLQAHQAKQAAVKK 302
VLQAHQAK+ + K+
Sbjct: 610 VLQAHQAKEHSPKQ 623
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 31/67 (46%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E GRS+GFGFV ++ E+A KAV EMNG+ I K LYV AQ++ +R+ L ++ Q I
Sbjct: 225 DEKGRSRGFGFVNYAHHEDAQKAVNEMNGKEINGKILYVGRAQKRLERQGELKRKFDQ-I 283
Query: 62 ANMRMQQ 68
R+Q+
Sbjct: 284 KQDRIQR 290
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/73 (27%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ MNG ++ + ++V + +++R+ S+ M +
Sbjct: 131 VCDEKGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREVEFGSKAM-K 189
Query: 61 IANMRMQQMGQLF 73
N+ ++ G+ F
Sbjct: 190 FTNVYIKNFGEDF 202
>gi|351695842|gb|EHA98760.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 709
Score = 249 bits (636), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 158/298 (53%), Positives = 196/298 (65%), Gaps = 31/298 (10%)
Query: 19 EEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM--QQMGQLFQPG 76
EEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR+A++R + +QP
Sbjct: 417 EEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPA 476
Query: 77 STGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGFPNIP-QFR-S 131
GYF+ +PQ Q +Y P+Q+ Q+RP PRW A G F N+P R +
Sbjct: 477 PPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------QGARPHPFQNMPGAIRPA 530
Query: 132 APRASTGQTVIRGAN------MSARPITGQST--MGPRGGGPMQAPGPASVSAAGRQTGG 183
APR + +R A+ MS + + ST MGPR A PA + +
Sbjct: 531 APRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAA 588
Query: 184 YNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLF 243
+ P ++ TQPQ + QPA VHVQGQEPLT++MLA+A PQEQKQMLGERLF
Sbjct: 589 GVRNPQQHLNTQPQVTMQ--QPA------VHVQGQEPLTASMLASAPPQEQKQMLGERLF 640
Query: 244 PLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
PLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 641 PLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQK 698
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 315 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 372
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 221 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 279
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 280 FTNVYIKNFGE 290
>gi|395506976|ref|XP_003757804.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 594
Score = 249 bits (635), Expect = 1e-63, Method: Compositional matrix adjust.
Identities = 161/307 (52%), Positives = 197/307 (64%), Gaps = 40/307 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 311 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 370
Query: 61 IANMRMQQMGQLF-QPGSTGGYFVPTLPQ-PQR--FYGPTQMTQIRPQPRWAAAPQMRPS 116
I+ +R G +F QP + YF+P +PQ P R FY P+ M IRP PRW + S
Sbjct: 371 ISVLRNIN-GPVFPQPTN---YFLPAIPQSPTRASFYSPSTMAPIRPAPRWTSY-----S 421
Query: 117 GQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSA 176
++ F + + PR ST +N+S + ST PR G MQ V
Sbjct: 422 PRSLCAF--VVFLPATPRRST-------SNIST--VRQASTQVPRAGPHMQ-----RVVN 465
Query: 177 AGRQTGGYNKYPVRNPGT----QPQAQIGGIQPAAAGV--QAVHVQGQEPLTSTMLAAAQ 230
G QT G PG+ PQ + P A V +AVH+QGQEPLT++MLA+A
Sbjct: 466 IGTQTMGTG-----CPGSPGQAIPQYKYSSAMPNAHQVMERAVHIQGQEPLTASMLASAP 520
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
PQEQKQMLG+RL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL SK+EEAVA L
Sbjct: 521 PQEQKQMLGDRLYPLIYGVHAQLAGKITGMLLEIDNSELLLMLESPESLHSKIEEAVAAL 580
Query: 291 QAHQAKQ 297
QA + +
Sbjct: 581 QAQEVME 587
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ E+G S+GFGFV F EEA KAV MNG+ +G + LYV AQ++ +R+ L ++ Q
Sbjct: 209 VDENGHSRGFGFVNFEKHEEAQKAVNSMNGKALGGRVLYVGRAQKRTERQGELKRRFEQ 267
Score = 45.4 bits (106), Expect = 0.028, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 39/59 (66%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ ++ S+GFGFV F + E A +A++ MNG ++ + ++V + +++R+A L ++ ++
Sbjct: 116 VCDENGSRGFGFVHFETQEAANQAISTMNGMLLNDRKVFVGHFKSRQEREAELGARALE 174
>gi|37681851|gb|AAQ97803.1| poly(A)-binding protein, cytoplasmic 1 [Danio rerio]
Length = 620
Score = 249 bits (635), Expect = 2e-63, Method: Compositional matrix adjust.
Identities = 158/315 (50%), Positives = 200/315 (63%), Gaps = 34/315 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M++ G S+GFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QY+QR
Sbjct: 326 MTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAA-APQMR-- 114
+A++R + +Q GS GY++ ++PQ + FY + +RP PRWA+ AP+ +
Sbjct: 386 LASIRAIPGPAIPTTYQQGS--GYYMTSVPQVRSFYNA--VPNLRPAPRWASQAPRTQGP 441
Query: 115 -PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
P+ Q P P ST + +R A+ I M G Q G +
Sbjct: 442 FPAQFVRQAVPRRP--------STTISTVRQASTQVPHINNTQRMANIG---TQTAGGRA 490
Query: 174 VSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQ-----AVHVQGQEPLTSTML 226
A R Y KY VRN Q I P V AVH++GQEPLT++ML
Sbjct: 491 AGTAVRGVSQY-KYSAGVRNV----QQVINAPAPVVHQVVQNTEPAVHMKGQEPLTASML 545
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
AAA +EQKQ+LGERL+PLIQ ++P LAGKITGMLLEIDN+ELL+MLE ESL +KVEEA
Sbjct: 546 AAAPLKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHMLESPESLHAKVEEA 605
Query: 287 VAVLQAHQAKQAAVK 301
VAVLQAHQAK+ + K
Sbjct: 606 VAVLQAHQAKEMSAK 620
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E GRS+GFGFV F + +A +AVTEMNG+ + + LYV AQ++ +R+ L ++ Q I
Sbjct: 225 DERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQ-I 283
Query: 62 ANMRMQQ 68
R+Q+
Sbjct: 284 KQERIQR 290
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ MNG ++ + ++V + +++R+A + ++ ++
Sbjct: 131 VCDENGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVE- 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|114682135|ref|XP_514668.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 2
[Pan troglodytes]
gi|397511247|ref|XP_003825989.1| PREDICTED: polyadenylate-binding protein 1-like [Pan paniscus]
Length = 614
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 158/311 (50%), Positives = 192/311 (61%), Gaps = 43/311 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG +T +P PRW + P R
Sbjct: 386 LSTMRTLSNPLLGSFQQPSS---YFLPAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-R 441
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQT---VIRGANMSARPIT-GQSTMGPRGGGPMQAPG 170
PS + P +P+ A +S Q V R + R G T GP G G PG
Sbjct: 442 PSCASMVRPPVVPRRPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCC-TPG 500
Query: 171 ----PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTML 226
P S+A T Y V+ P AVH+ GQEPLT++ML
Sbjct: 501 RPLLPCKCSSAAHST-----YRVQEP-------------------AVHIPGQEPLTASML 536
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
AAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL +K++EA
Sbjct: 537 AAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEA 596
Query: 287 VAVLQAHQAKQ 297
VAVLQAHQA +
Sbjct: 597 VAVLQAHQAME 607
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 228 GHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ ++
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
>gi|185135971|ref|NP_001118228.1| polyadenylate-binding protein 1-like [Homo sapiens]
gi|74754038|sp|Q4VXU2.1|PAP1L_HUMAN RecName: Full=Polyadenylate-binding protein 1-like
gi|119596298|gb|EAW75892.1| hCG2019100, isoform CRA_f [Homo sapiens]
Length = 614
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 158/311 (50%), Positives = 192/311 (61%), Gaps = 43/311 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG +T +P PRW + P R
Sbjct: 386 LSTMRTLSNPLLGSFQQPSS---YFLPAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-R 441
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQT---VIRGANMSARPIT-GQSTMGPRGGGPMQAPG 170
PS + P +P+ A +S Q V R + R G T GP G G PG
Sbjct: 442 PSCASMVRPPVVPRRPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCC-TPG 500
Query: 171 ----PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTML 226
P S+A T Y V+ P AVH+ GQEPLT++ML
Sbjct: 501 RPLLPCKCSSAAHST-----YRVQEP-------------------AVHIPGQEPLTASML 536
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
AAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL +K++EA
Sbjct: 537 AAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEA 596
Query: 287 VAVLQAHQAKQ 297
VAVLQAHQA +
Sbjct: 597 VAVLQAHQAME 607
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 228 GHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ ++
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
>gi|326931817|ref|XP_003212020.1| PREDICTED: embryonic polyadenylate-binding protein-like [Meleagris
gallopavo]
Length = 633
Score = 248 bits (632), Expect = 3e-63, Method: Compositional matrix adjust.
Identities = 166/313 (53%), Positives = 203/313 (64%), Gaps = 25/313 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQ---RFYGPTQMTQIRPQPRWAAAPQMRP 115
+A MR L FQP GYF+P +PQPQ FY P+ + +RP RW+A P P
Sbjct: 386 LATMRALPGPFLGSFQPPP--GYFLPPIPQPQPRAAFYSPSPVVPVRPATRWSAQPSRSP 443
Query: 116 SGQTAQGFPNIPQFRSAP---RASTGQTVIRGANMSARPITGQSTM--GPRGGGPMQAPG 170
+ A P R+A R + + +R A+ +T S + G + A
Sbjct: 444 TYPAA-----TPVLRAAVQPRRLVSNISTMRQASTQVPRLTISSLLVAANIGTQTVSARV 498
Query: 171 PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAA--AGVQAVHVQGQEPLTSTMLAA 228
P+S + G + KY + QP +G + P A G AVHVQGQEPLT++MLAA
Sbjct: 499 PSSPTLRG---APHYKYSLAMRNIQP---MGSVPPGAQQVGEPAVHVQGQEPLTASMLAA 552
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A PQEQKQM+GERL+PLI M+ LAGKITGMLLEIDN+ELL +LE ESL SK+EEAVA
Sbjct: 553 APPQEQKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLESPESLHSKIEEAVA 612
Query: 289 VLQAHQAKQAAVK 301
VLQAHQA +A+ K
Sbjct: 613 VLQAHQATEASHK 625
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M GRSKGFGFV F EEA KAV +MNG+ I + +YV AQ++ +R++ L ++ Q
Sbjct: 224 MDNTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+G GFV F + E AT+A+ MNG ++ + ++V + +++R+A ++ M+
Sbjct: 131 VCDENGSRGHGFVHFETQEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGARAME- 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|41054151|ref|NP_956133.1| polyadenylate-binding protein 1-like [Danio rerio]
gi|27881953|gb|AAH44513.1| Zgc:55855 [Danio rerio]
gi|182890236|gb|AAI65470.1| Zgc:55855 protein [Danio rerio]
Length = 620
Score = 247 bits (631), Expect = 4e-63, Method: Compositional matrix adjust.
Identities = 158/315 (50%), Positives = 199/315 (63%), Gaps = 34/315 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M++ G S+GFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QY+QR
Sbjct: 326 MTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAA-APQMR-- 114
+A++R + +Q GS GY++ ++PQ + FY + +RP PRWA AP+ +
Sbjct: 386 LASIRAIPGPAIPTTYQQGS--GYYMTSVPQVRSFYNA--VPNLRPAPRWAFQAPRTQGP 441
Query: 115 -PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
P+ Q P P ST + +R A+ I M G Q G +
Sbjct: 442 FPAQFVRQAVPRRP--------STTISTVRQASTQVPHINNTQRMANIG---TQTAGGRA 490
Query: 174 VSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQ-----AVHVQGQEPLTSTML 226
A R Y KY VRN Q I P V AVH++GQEPLT++ML
Sbjct: 491 AGTAVRGVSQY-KYSAGVRNV----QQVINAPAPVVHQVVQNTEPAVHMKGQEPLTASML 545
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
AAA +EQKQ+LGERL+PLIQ ++P LAGKITGMLLEIDN+ELL+MLE ESL +KVEEA
Sbjct: 546 AAAPLKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHMLESPESLHAKVEEA 605
Query: 287 VAVLQAHQAKQAAVK 301
VAVLQAHQAK+ + K
Sbjct: 606 VAVLQAHQAKEMSAK 620
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E GRS+GFGFV F + +A +AVTEMNG+ + + LYV AQ++ +R+ L ++ Q I
Sbjct: 225 DERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQ-I 283
Query: 62 ANMRMQQ 68
R+Q+
Sbjct: 284 KQERIQR 290
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ MNG ++ + ++V + +++R+A + ++ ++
Sbjct: 131 VCDENGSKGYGFVHFETQEAANRAIETMNGMLLNDRKVFVGHFKSRKEREAEMGAKAVE- 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|297707183|ref|XP_002830392.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Pongo
abelii]
Length = 614
Score = 246 bits (629), Expect = 6e-63, Method: Compositional matrix adjust.
Identities = 158/315 (50%), Positives = 191/315 (60%), Gaps = 55/315 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG +T +P PRW + P R
Sbjct: 386 LSTMRTLSNPLLGSFQQPSS---YFLPAVPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-R 441
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVI----------RGANMSARPITGQSTMGPRGGG 164
PS + P +P+ A +S Q R AN+ G T GP G G
Sbjct: 442 PSCASVVRPPVVPRRPPAHISSVRQASTQVPHTVPHTQRVANI------GTQTTGPSGVG 495
Query: 165 PMQAPG----PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEP 220
PG P S+A T Y V+ P AVH+ GQEP
Sbjct: 496 CC-TPGRPLLPYKCSSAAHST-----YRVQEP-------------------AVHIPGQEP 530
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT++MLAAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL
Sbjct: 531 LTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLH 590
Query: 281 SKVEEAVAVLQAHQA 295
+K++EAVAVLQAHQA
Sbjct: 591 AKIDEAVAVLQAHQA 605
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 228 GHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ ++ N+ +
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE-FTNIYV 195
Query: 67 QQM 69
+ +
Sbjct: 196 KNL 198
>gi|426391820|ref|XP_004062264.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Gorilla
gorilla gorilla]
Length = 614
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 159/317 (50%), Positives = 191/317 (60%), Gaps = 59/317 (18%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG +T +P PRW + P R
Sbjct: 386 LSTMRTLSNPLLGSFQQPSS---YFLPAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-R 441
Query: 115 PSGQT--------AQGFPNIPQFRSA----PRASTGQTVIRGANMSARPITGQSTMGPRG 162
PS + + +I R A PR T R AN+ G T GP G
Sbjct: 442 PSCASVVRPPAVPRRPPAHISSVRQASTQVPR--TVPHTQRVANI------GTQTTGPSG 493
Query: 163 GGPMQAPG----PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQ 218
G PG P S+A T Y V+ P AVH+ GQ
Sbjct: 494 VGCC-TPGRPLLPCKCSSAAHST-----YRVQEP-------------------AVHIPGQ 528
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ES
Sbjct: 529 EPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPES 588
Query: 279 LKSKVEEAVAVLQAHQA 295
L +K++EAVAVLQAHQA
Sbjct: 589 LHAKIDEAVAVLQAHQA 605
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 228 GHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ ++
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
>gi|355563109|gb|EHH19671.1| Polyadenylate-binding protein 1-like protein [Macaca mulatta]
Length = 614
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 158/315 (50%), Positives = 192/315 (60%), Gaps = 55/315 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG +T +P PRW + P R
Sbjct: 386 LSTMRTLSNPLLGSFQQPSS---YFLPAVPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-R 441
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVI----------RGANMSARPITGQSTMGPRGGG 164
PS + P +P+ A +S Q R AN+ G T GP GG
Sbjct: 442 PSCASMVRPPVMPRRPPAHISSVRQASTQVPRMVPHTQRVANI------GTQTTGP-GGV 494
Query: 165 PMQAPG----PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEP 220
PG P S+A +N Y V+ P AVH+ GQEP
Sbjct: 495 GCCTPGRPLLPYKCSSA-----AHNTYRVQEP-------------------AVHIPGQEP 530
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT++MLAAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL
Sbjct: 531 LTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLH 590
Query: 281 SKVEEAVAVLQAHQA 295
+K++EAVAVLQAHQA
Sbjct: 591 AKIDEAVAVLQAHQA 605
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 228 GHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ ++
Sbjct: 131 VCDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE- 189
Query: 61 IANMRMQQM 69
N+ ++ +
Sbjct: 190 FTNIYVKNL 198
>gi|194672643|ref|XP_882298.3| PREDICTED: poly(A) binding protein, cytoplasmic 1-like isoform 19
[Bos taurus]
gi|297482024|ref|XP_002692514.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Bos taurus]
gi|296480945|tpg|DAA23060.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 613
Score = 246 bits (629), Expect = 7e-63, Method: Compositional matrix adjust.
Identities = 160/308 (51%), Positives = 190/308 (61%), Gaps = 39/308 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG I+P PRW A P
Sbjct: 386 LSTMRALGGPILGSFQQPAS---YFLPAVPQPPAQAPYYGSG--PPIQPAPRWTAQP--- 437
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPIT-GQSTMGPRGGGPMQAPGPAS 173
PR S +V+R A MS RP+T S+ P P
Sbjct: 438 ------------------PRPSCA-SVVRPAAMSRRPLTPVGSSRQVSTHVPHLVPHTQR 478
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPA--AAGVQ--AVHVQGQEPLTSTMLAAA 229
V+ G QT G + P ++P PA VQ AVHV GQEPLT++MLAAA
Sbjct: 479 VANIGTQTTGPSMTGCSTP-SRPLLTHTYSTPAHRTDRVQEPAVHVPGQEPLTASMLAAA 537
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
EQKQM+GERLFPL+ ++ LAGKITGMLLEIDN+ELL MLE ESL +KVEEA+AV
Sbjct: 538 PLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALAV 597
Query: 290 LQAHQAKQ 297
LQAHQA +
Sbjct: 598 LQAHQATE 605
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ G S+GFGFV F EEA KAV MNGR + + LYV AQ++ +R+ L ++ Q
Sbjct: 225 DDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+GFGFV F + E A A++ MNG ++ + ++V + + +R+ L ++ M+
Sbjct: 131 VCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME- 189
Query: 61 IANMRMQQM 69
N+ ++ +
Sbjct: 190 FTNIYVKNL 198
>gi|224078006|ref|XP_002190593.1| PREDICTED: embryonic polyadenylate-binding protein-like
[Taeniopygia guttata]
Length = 629
Score = 246 bits (627), Expect = 1e-62, Method: Compositional matrix adjust.
Identities = 159/303 (52%), Positives = 195/303 (64%), Gaps = 17/303 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPSG 117
+A MR L + GYF+P +PQPQ FYGP+ + +RP RW+A P P
Sbjct: 386 LATMRALPGPLLGSFQTPSGYFLPPMPQPQTRAAFYGPSPVVPVRPATRWSAQPSRPPLY 445
Query: 118 QTAQGFPNIPQFRSAP---RASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
A P R+A R + + R A+ + Q+ G + S
Sbjct: 446 PEA-----TPILRAAVPPRRLLSNISTTRQASTQVPRVPPQAQRLVNIGTQTVSTRLPSS 500
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
SA R T Y KY QP +G + P G AVHVQGQEPLT+++LAAA PQEQ
Sbjct: 501 SALPRGTQQY-KYSSSARNMQP---MGHMPPV--GEPAVHVQGQEPLTASLLAAAPPQEQ 554
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
KQM+GERL+PLI ++P LAGKITGMLLEIDN+ELL +LE +SL+SK+EEAV VLQAHQ
Sbjct: 555 KQMIGERLYPLIHVLHPSLAGKITGMLLEIDNSELLLLLESPDSLRSKIEEAVTVLQAHQ 614
Query: 295 AKQ 297
+ +
Sbjct: 615 STE 617
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 40/59 (67%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +GRSKGFGFV F EEA KAV +MNG+ I + LYV AQ++ +R++ L ++ Q
Sbjct: 224 MDNNGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRLLYVGRAQKRLERQSELKRKFEQ 282
Score = 45.8 bits (107), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/71 (25%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+G+GFV F + E AT+A+ MNG ++ + ++V + +++R+A + ++ ++
Sbjct: 131 VCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEVGARAIE- 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|302565150|ref|NP_001181379.1| polyadenylate-binding protein 1-like [Macaca mulatta]
Length = 614
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 158/315 (50%), Positives = 191/315 (60%), Gaps = 55/315 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG +T +P PRW + P R
Sbjct: 386 LSTMRTLSNPLLGSFQQPSS---YFLPAVPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-R 441
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVI----------RGANMSARPITGQSTMGPRGGG 164
PS + P +P+ A +S Q R AN+ G T GP GG
Sbjct: 442 PSCASMVRPPVMPRRPPAHISSVRQASTQVPRMVPHTQRVANI------GTQTTGP-GGV 494
Query: 165 PMQAPG----PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEP 220
PG P S+A T Y V+ P AVH+ GQEP
Sbjct: 495 GCCTPGRPLLPYKCSSAAHST-----YRVQEP-------------------AVHIPGQEP 530
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT++MLAAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL
Sbjct: 531 LTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLH 590
Query: 281 SKVEEAVAVLQAHQA 295
+K++EAVAVLQAHQA
Sbjct: 591 AKIDEAVAVLQAHQA 605
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 228 GHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ ++
Sbjct: 131 VCDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE- 189
Query: 61 IANMRMQQM 69
N+ ++ +
Sbjct: 190 FTNIYVKNL 198
>gi|402882426|ref|XP_003904744.1| PREDICTED: polyadenylate-binding protein 1-like [Papio anubis]
Length = 614
Score = 245 bits (626), Expect = 2e-62, Method: Compositional matrix adjust.
Identities = 158/317 (49%), Positives = 192/317 (60%), Gaps = 55/317 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG +T +P PRW + P R
Sbjct: 386 LSTMRTLSNPLLGSFQQPSS---YFLPAVPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-R 441
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVI----------RGANMSARPITGQSTMGPRGGG 164
PS + P +P+ A +S Q R AN+ G T GP GG
Sbjct: 442 PSCASMVRPPVMPRRPPAHISSVRQASTQVPRMVPHTQRVANI------GTQTTGP-GGV 494
Query: 165 PMQAPG----PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEP 220
PG P S+A T Y ++ P AVHV GQEP
Sbjct: 495 GCCTPGRPLLPYKCSSAAHST-----YRIQEP-------------------AVHVPGQEP 530
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT++MLAAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL
Sbjct: 531 LTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLH 590
Query: 281 SKVEEAVAVLQAHQAKQ 297
+K++EAVAVLQAHQA +
Sbjct: 591 AKIDEAVAVLQAHQAME 607
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 228 GHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ ++
Sbjct: 131 VCDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE- 189
Query: 61 IANMRMQQM 69
N+ ++ +
Sbjct: 190 FTNIYVKNL 198
>gi|323650114|gb|ADX97143.1| polyadenylate-binding protein 1 [Perca flavescens]
Length = 263
Score = 244 bits (623), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 150/288 (52%), Positives = 180/288 (62%), Gaps = 37/288 (12%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
+K FVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR+A +R
Sbjct: 1 AKVLAFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMATVRA 60
Query: 67 QQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
L +QP GYF+ +PQ Q +Y Q+ Q+RP PRWA G Q
Sbjct: 61 VPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYSANQLAQLRPSPRWAT------QGVRPQ 114
Query: 122 GFPNIPQFR--SAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGR 179
F N+P SAPR T + RP T + PR + P + + + R
Sbjct: 115 HFQNMPNAMRPSAPRPQTFNAI--------RPTTTPNAQVPRMMASQRMP---TQALSQR 163
Query: 180 QTGGY-NKYPVR----NPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
TG PVR + +QPQ + QPA VHVQGQEPLT++MLAAA PQEQ
Sbjct: 164 PTGASATAAPVRAMPQHMASQPQ--VAMQQPA------VHVQGQEPLTASMLAAAPPQEQ 215
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
KQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SK
Sbjct: 216 KQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSK 263
>gi|344279674|ref|XP_003411612.1| PREDICTED: polyadenylate-binding protein 1 [Loxodonta africana]
Length = 612
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 156/306 (50%), Positives = 189/306 (61%), Gaps = 35/306 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRIIG+KPLYVALAQRKE+R+A L++QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEERRAILSNQYMQR 385
Query: 61 IANMR---MQQMGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR + +G QP S YF+P +PQP +YG + I+P PRWAA P R
Sbjct: 386 LSTMRALGVPLLGSSQQPTS---YFLPAMPQPPARAAYYGSGSVATIQPAPRWAAQPP-R 441
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
PS + P P+ P A TV + + P+ + G Q GP
Sbjct: 442 PSCASMVRPPATPR---RPLAQLS-TVRQASTQVPHPVPHTQRVANIG---TQTTGPGGA 494
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVH---VQGQEPLTSTMLAAAQP 231
T G P R+ AA V V + QEPLT++MLAAA P
Sbjct: 495 EGC---TSGQLLLPYRHSS------------AAHNVHRVLESPMHRQEPLTASMLAAALP 539
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
EQKQM+GERL+PLI +YP LAGKITGMLLEIDN+ELL MLE ESL++K+EEAVAVLQ
Sbjct: 540 HEQKQMIGERLYPLIYGVYPHLAGKITGMLLEIDNSELLLMLESPESLQAKIEEAVAVLQ 599
Query: 292 AHQAKQ 297
AHQA +
Sbjct: 600 AHQAME 605
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G S+GFGFV F EEA KAV +MNG+ + + LYV AQ++ +R+ L ++ Q
Sbjct: 225 DNNGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRQLYVGRAQKRVERQNELKRKFEQ 282
Score = 44.3 bits (103), Expect = 0.066, Method: Compositional matrix adjust.
Identities = 18/59 (30%), Positives = 38/59 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ ++ S+GFGFV F + E A +A++ MNG ++ + ++V + + +R+A L ++ M+
Sbjct: 131 VCDEHGSRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELRARAME 189
>gi|403290728|ref|XP_003936459.1| PREDICTED: polyadenylate-binding protein 1-like [Saimiri
boliviensis boliviensis]
Length = 614
Score = 244 bits (622), Expect = 4e-62, Method: Compositional matrix adjust.
Identities = 156/305 (51%), Positives = 189/305 (61%), Gaps = 35/305 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG +T +P PRW + P R
Sbjct: 386 VSTMRTLSNPLLGSFQQPSS---YFLPAVPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-R 441
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
PS + P +P+ P A G IR A ST PR P V
Sbjct: 442 PSCASMVRPPVMPR---CPPAHIGG--IRQA----------STQVPR-----TVPHTQRV 481
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQ----AVHVQGQEPLTSTMLAAAQ 230
+ G QT G + PG +P A + Q AVH+ G EPLT++MLAAA
Sbjct: 482 ANIGTQTTGPSGVGCCTPG-RPLLPYKCSSAAHSTDQVQEPAVHIPGHEPLTASMLAAAP 540
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL +K++EAVAVL
Sbjct: 541 LHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVL 600
Query: 291 QAHQA 295
QAHQA
Sbjct: 601 QAHQA 605
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
GRS+ FGFV F EEA KAV MNG+ + + LY + AQ++ +R+ L ++ Q
Sbjct: 228 GRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRRFEQ 282
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+GFGFV F + E A +A+ MNG ++ + ++V + + +R A L ++ ++
Sbjct: 131 VCDEHGSRGFGFVHFETYEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALE- 189
Query: 61 IANMRMQQM 69
N+ ++ +
Sbjct: 190 FTNIYVKNL 198
>gi|296200520|ref|XP_002747628.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 614
Score = 244 bits (622), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 155/309 (50%), Positives = 188/309 (60%), Gaps = 43/309 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG +T +P PRW + P R
Sbjct: 386 LSTMRTLSNPLLGSFQQPSS---YFLPAVPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-R 441
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQT---VIRGANMSARPIT-GQSTMGPRGGGPMQAPG 170
PS + P +P+ A +S Q V R + R G T GP G G PG
Sbjct: 442 PSCASMVRPPVMPRCPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCC-TPG 500
Query: 171 ----PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTML 226
P S+A T V+ P AVH+ G EPLT++ML
Sbjct: 501 RPLLPYKCSSAAHSTDQ-----VQEP-------------------AVHIPGHEPLTASML 536
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
AAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL +K++EA
Sbjct: 537 AAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEA 596
Query: 287 VAVLQAHQA 295
VAVLQAHQA
Sbjct: 597 VAVLQAHQA 605
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 35/55 (63%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
GRS+ FGFV F EEA KAV MNG+ + + LY + AQ++ +R+ L ++ Q
Sbjct: 228 GRSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYASRAQKRVERQNELKRKFEQ 282
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
S+GFGFV F + E A +A+ MNG ++ + ++V + + +R A L ++ ++ N+ +
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRRERAAELGARALE-FTNIYV 195
Query: 67 QQM 69
+ +
Sbjct: 196 KNL 198
>gi|444706907|gb|ELW48224.1| Polyadenylate-binding protein 4 [Tupaia chinensis]
Length = 692
Score = 243 bits (621), Expect = 5e-62, Method: Compositional matrix adjust.
Identities = 172/371 (46%), Positives = 204/371 (54%), Gaps = 82/371 (22%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQRFYG-----------------PTQMTQ 100
+A MR + FQP + GGYFVP +PQP + P+ + Q
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQPGPWSASLVSDEQCLSPPGFQGMPSAIRQ 444
Query: 101 IRPQPRWAAAPQMRPSGQT--AQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTM 158
P+P + P+G ++G P Q + GA + + +T
Sbjct: 445 SGPRPTLR---HLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFGGAGAAQQGLTDSCQS 501
Query: 159 GPRGGGPMQAPG---PASVSAAGRQTGGYNKY--PVRNPGTQPQAQIGGIQPAAAGVQAV 213
G GG P A+V+A + KY VR+P P IQP A AV
Sbjct: 502 G--GGVPTAVQNLAPRAAVAAPAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAV 552
Query: 214 HVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYML 273
HVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+ML
Sbjct: 553 HVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHML 612
Query: 274 EHNESLKSK------------------------------------------VEEAVAVLQ 291
E ESL+SK V+EAVAVLQ
Sbjct: 613 ESPESLRSKVSEVSDPVLQPSDWELGHSGTTERVRPISPPLRSTDHSDPLQVDEAVAVLQ 672
Query: 292 AHQAKQAAVKK 302
AH AK+ A +K
Sbjct: 673 AHHAKKEAAQK 683
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ S F
Sbjct: 190 FTNVYIKNFGEEVDDESLKELF 211
>gi|449281934|gb|EMC88877.1| Embryonic polyadenylate-binding protein [Columba livia]
Length = 646
Score = 243 bits (621), Expect = 7e-62, Method: Compositional matrix adjust.
Identities = 161/311 (51%), Positives = 200/311 (64%), Gaps = 22/311 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 342 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 401
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A +R L FQP GYF+P +PQPQ FY P+ + +RP RW+A P RP
Sbjct: 402 LATLRALPGPLLGSFQPPP--GYFLPPIPQPQTRATFYSPSPVVPVRPATRWSAQPS-RP 458
Query: 116 SGQTAQGFPNIPQFRSAP---RASTGQTVIRGANMSARPITGQS-TMGPRGGGPMQAPGP 171
P P R+A R T + +R A+ + Q+ + G + A P
Sbjct: 459 --------PPTPILRAAVPPRRLLTNISTMRQASTQVPRVPPQAQRVANIGTQTVSARVP 510
Query: 172 ASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQP 231
+S + R T Y KY QP + + G AVHVQGQEPLT+++LAAA P
Sbjct: 511 SSPTLP-RGTPQY-KYSSSVRNVQPMGHMPPVVAPQVGEPAVHVQGQEPLTASVLAAAPP 568
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QEQKQM+GERL+PLI ++P LAGKITGMLLEIDN+ELL +LE +SL+SK+EEAVAVLQ
Sbjct: 569 QEQKQMIGERLYPLIYAIHPSLAGKITGMLLEIDNSELLLLLESPDSLRSKMEEAVAVLQ 628
Query: 292 AHQAKQAAVKK 302
AHQ + + K
Sbjct: 629 AHQVTKTSHKN 639
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/75 (37%), Positives = 39/75 (52%), Gaps = 16/75 (21%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATK----------------AVTEMNGRIIGSKPLYVALAQ 44
M GRSKGFGFV F EEA K AV +MNG+ I + +YV AQ
Sbjct: 224 MDSTGRSKGFGFVNFEKHEEAQKARGSSCCAQRPPLRWQAVADMNGKEINGRIVYVGRAQ 283
Query: 45 RKEDRKAHLASQYMQ 59
++ +R++ L ++ Q
Sbjct: 284 KRLERQSELKRKFEQ 298
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+G+GFV F + E AT+A+ MNG ++ + ++V + +++R+A ++ M+
Sbjct: 131 VCDENGSRGYGFVHFETHEAATRAIETMNGMLLNDRKVFVGHFKSRKEREAEFGAKAME- 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|395829049|ref|XP_003787673.1| PREDICTED: polyadenylate-binding protein 1-like [Otolemur
garnettii]
Length = 611
Score = 243 bits (620), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 153/302 (50%), Positives = 183/302 (60%), Gaps = 32/302 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG + M +P PRW + P
Sbjct: 386 LSTMRALGSPFLGSFQQPTS---YFLPAVPQPPGQAAYYGSSSMPPPQPAPRWTSQP--- 439
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGG-PMQAPGPAS 173
PR+S+ +++R MS RP S+M P P
Sbjct: 440 ------------------PRSSSA-SMVRPPGMSRRPSAHISSMRQASTQVPRPLPHTQR 480
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQE 233
V+ G QT G + PG AVHV GQEPLT +MLAAA E
Sbjct: 481 VANIGTQTTGSSGTGCCMPGRPLLPYKSTHNTHRVQEPAVHVPGQEPLTVSMLAAAPLHE 540
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQM+GERL+PLI+ + +LAGKITGMLLEIDN+ELL MLE ESL +KVEEAVAVLQ H
Sbjct: 541 QKQMIGERLYPLIREVQSQLAGKITGMLLEIDNSELLLMLESPESLHAKVEEAVAVLQEH 600
Query: 294 QA 295
QA
Sbjct: 601 QA 602
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+GFGFV F + EEA KAV MNG+ + + LYV AQ++ +R+ L ++ Q
Sbjct: 228 GHSRGFGFVNFETHEEAQKAVVHMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 31/53 (58%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
S+GFGFV F + E A A+ MNG ++ ++V + + +R+ L ++ M+
Sbjct: 137 SRGFGFVHFETHEAAQHAINTMNGMLLNDHKVFVGHFKSRREREVELGARAME 189
>gi|118100597|ref|XP_417367.2| PREDICTED: embryonic polyadenylate-binding protein-like [Gallus
gallus]
Length = 632
Score = 242 bits (617), Expect = 2e-61, Method: Compositional matrix adjust.
Identities = 166/323 (51%), Positives = 198/323 (61%), Gaps = 46/323 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRW-------- 107
+A MR L FQP GYF+P +PQPQ FY P+ + +RP RW
Sbjct: 386 LATMRALPGPFLGSFQPPP--GYFLPPIPQPQTRAAFYSPSPVVPVRPATRWSAQPTRPP 443
Query: 108 ---AAAPQMRPSGQTAQGFPNIPQFRSA----PRASTGQTVIRGANMSARPITGQSTMGP 160
AA P +R + Q + NI R A PR R AN+ + I+ + P
Sbjct: 444 PYPAATPILRAAVQPRRLLSNISTMRQASTQVPRVPPQAQ--RVANIGTQTISARVPSSP 501
Query: 161 RGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAA--AGVQAVHVQGQ 218
G Q KY + QP +G + P A G AVH+QGQ
Sbjct: 502 TLRGAPQY-----------------KYSLAVRNIQP---MGSVPPGAQQVGEPAVHIQGQ 541
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA PQEQKQM+GERL+PLI M+ LAGKITGMLLEIDN+ELL +LE ES
Sbjct: 542 EPLTASMLAAAPPQEQKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLESPES 601
Query: 279 LKSKVEEAVAVLQAHQAKQAAVK 301
L SK+EEAVAVLQAHQA +A+ K
Sbjct: 602 LHSKIEEAVAVLQAHQATEASHK 624
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M GRSKGFGFV F EEA KAV +MNG+ I + +YV AQ++ +R++ L ++ Q
Sbjct: 224 MDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 42/71 (59%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+G GFV F + E AT+A+ MNG ++ + ++V + +++R+A ++ M+
Sbjct: 131 VCDENGSRGHGFVHFETQEAATRAIQTMNGMLLNDRKVFVGHFKSRKEREAEFGARAME- 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>gi|426228299|ref|XP_004008250.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 551
Score = 241 bits (615), Expect = 3e-61, Method: Compositional matrix adjust.
Identities = 157/307 (51%), Positives = 193/307 (62%), Gaps = 32/307 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 202 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 261
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 262 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 315
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQS--TMGPRGGGP 165
G F N+P R +APR + +R A+ MS + + S TMGPR
Sbjct: 316 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 373
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QP AVHVQGQEPLT++M
Sbjct: 374 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QP------AVHVQGQEPLTASM 425
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGE LFPLIQ M+P LAGKITGMLLEIDN E L+MLE ESL+SK +
Sbjct: 426 LASAPPQEQKQMLGEGLFPLIQAMHPTLAGKITGMLLEIDNLE-LHMLEPPESLRSKSQG 484
Query: 286 AVAVLQA 292
A L
Sbjct: 485 ADWWLHC 491
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ + N+ +
Sbjct: 91 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYI 149
Query: 67 QQMGQ 71
+ G+
Sbjct: 150 KNFGE 154
>gi|157817831|ref|NP_001099621.1| poly(A) binding protein, cytoplasmic 2 [Rattus norvegicus]
gi|149017412|gb|EDL76463.1| poly A binding protein, cytoplasmic 2 (predicted) [Rattus
norvegicus]
Length = 630
Score = 238 bits (608), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 160/317 (50%), Positives = 200/317 (63%), Gaps = 39/317 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E GRSKGFGFVCFSSPEEATKAV+EMNGRI+ +KPLYVALAQRKE+R+AHL +QY+QR
Sbjct: 326 MTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQRF--YGPTQMTQIRPQPRWAAAPQMRPS 116
+A++R + +QP + GY V +PQ Q P+Q+ Q P RW A
Sbjct: 386 MASVRSGPNSLINAYQPAPS-GYSVAAVPQTQNCAPCCPSQIVQPSPSTRWTA------Q 438
Query: 117 GQTAQGFPNIP--QFRSAPRASTGQTVIRGAN------MSARPITGQS--TMGPRGGGPM 166
G FPN+ +AP++S T +R ++ M+A+ IT S T G R P
Sbjct: 439 GARPHPFPNVSGASHPAAPKSSF--TTVRPSSSHVPQVMAAQRITNTSAQTTGQR---PA 493
Query: 167 QAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
A PA+ R Y KY VRN AQ+ QP +V +QGQEP T++
Sbjct: 494 LASSPATTPV--RSIPQY-KYATGVRNSQQHLNAQLVQ-QP------SVCIQGQEPWTAS 543
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
L A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+E L+ML+ ESL S+ +
Sbjct: 544 TLGTA-PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEPLHMLDSPESLCSRAQ 602
Query: 285 EAVAVLQAHQAKQAAVK 301
EAV+ LQAHQA +AA K
Sbjct: 603 EAVSALQAHQANEAAQK 619
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K DR L ++ Q
Sbjct: 225 DEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQ 282
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGQFKSRKEREAELGTR-TKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G + G F
Sbjct: 190 FTNVYIKNFGDRMDDKTLNGLF 211
>gi|73992493|ref|XP_534430.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Canis lupus
familiaris]
Length = 611
Score = 238 bits (607), Expect = 2e-60, Method: Compositional matrix adjust.
Identities = 155/310 (50%), Positives = 189/310 (60%), Gaps = 40/310 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQP--QRFYGPTQMTQIRPQPRWAAAPQMRP 115
++ +R +G QP S YF+P++PQP Q Y + + ++P PRW A P
Sbjct: 386 LSTVRALGGPLLGSFHQPTS---YFLPSVPQPPAQAAYYASGLP-MQPTPRWTAPP---- 437
Query: 116 SGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPA--- 172
PR S+ +V+R MS RP S++ Q P P
Sbjct: 438 -----------------PRPSSA-SVVRPPAMSRRPPAQVSSVRQ---ASTQVPPPVPHT 476
Query: 173 -SVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQ--AVHVQGQEPLTSTMLAAA 229
V+ G QT G + PG GVQ AV + GQEPLT++MLAAA
Sbjct: 477 QRVANIGTQTTGASGVGYSTPGGPLLTHRYPSATHNHGVQEPAVRILGQEPLTASMLAAA 536
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
EQKQM+GERL+PLI + +LAGKITGMLLEIDN+ELL MLE ESL +KVEEA+AV
Sbjct: 537 PLHEQKQMIGERLYPLIYNTHTQLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALAV 596
Query: 290 LQAHQAKQAA 299
LQAHQA + A
Sbjct: 597 LQAHQATELA 606
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ G S+GFGFV F EEA KAV +MNG+ + + LYV AQ++ +R++ L ++ Q
Sbjct: 225 DDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQ 282
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D S+GFGFV F + E A +A+T MNG ++ + ++V + + +R+ L ++ M+
Sbjct: 131 VCDDHGSRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAME- 189
Query: 61 IANMRMQQM 69
N+ ++ +
Sbjct: 190 FTNIYVKNL 198
>gi|410899897|ref|XP_003963433.1| PREDICTED: embryonic polyadenylate-binding protein-like [Takifugu
rubripes]
Length = 606
Score = 238 bits (606), Expect = 3e-60, Method: Compositional matrix adjust.
Identities = 139/302 (46%), Positives = 184/302 (60%), Gaps = 26/302 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M++ +S+GFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQR+E+RKA L ++YMQR
Sbjct: 326 MTDGPQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+A +R + GY++ T+PQP+ FY P ++ +R PRW P
Sbjct: 386 LATLRTM-TSPIIDSYQQAGYYM-TVPQPRSFYSPNAVSTMRALPRWTGQPH------RL 437
Query: 121 QGFPNI---PQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAA 177
QG I P+ S P AS Q + N+ + + GG + PG
Sbjct: 438 QGPYTIVSGPRRGSTPIASVRQASTQAPNVISSAQKTNNIGTQTVGGRAELPGVPRSGQY 497
Query: 178 GRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQM 237
+ N V P +P +V++QGQEPLT++MLAAA +QKQ+
Sbjct: 498 KYSSAVRNAQQVPGPVLEP---------------SVYIQGQEPLTASMLAAAPLMDQKQL 542
Query: 238 LGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQ 297
LGERL+PLI ++P LAGKITGMLLEIDN+ELL+MLE ESL SKV+EA+AVLQAH+ K+
Sbjct: 543 LGERLYPLISTLHPNLAGKITGMLLEIDNSELLHMLETPESLHSKVDEAIAVLQAHRVKE 602
Query: 298 AA 299
+
Sbjct: 603 CS 604
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 29/67 (43%), Positives = 44/67 (65%), Gaps = 1/67 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E GRS+GFGFV F+ E+A KAV EMNG+ + K +YV AQ++ +R+ L ++ + I
Sbjct: 225 DERGRSRGFGFVNFAHHEDAQKAVDEMNGKELNGKVIYVGRAQKRLERQGELKRKF-ELI 283
Query: 62 ANMRMQQ 68
R+Q+
Sbjct: 284 KQDRIQR 290
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
SKG+GFV F + E A +A+ MNG ++ + ++V + +++R+ L S+ + + N+ +
Sbjct: 137 SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGHFKSRKEREEELGSKAL-KFTNIYI 195
Query: 67 QQMGQLFQ 74
+ G+ +
Sbjct: 196 KNFGEDYN 203
>gi|6754972|ref|NP_035163.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
gi|473092|emb|CAA53572.1| polyA binding protein, testis-enriched isoform [Mus musculus]
gi|29835142|gb|AAH51134.1| Poly(A) binding protein, cytoplasmic 2 [Mus musculus]
gi|148678113|gb|EDL10060.1| poly A binding protein, cytoplasmic 2 [Mus musculus]
Length = 628
Score = 237 bits (605), Expect = 4e-60, Method: Compositional matrix adjust.
Identities = 156/310 (50%), Positives = 190/310 (61%), Gaps = 27/310 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E GRSKGFGFVCFSSPEEATKAV+EMNGRI+ +KPLYVALAQRKE+R+AHL +QY+QR
Sbjct: 326 MTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQR 385
Query: 61 IANMRMQ-QMGQLFQPGSTGGYFVPTLPQPQRFY--GPTQMTQIRPQPRWAAAPQMRPSG 117
+A++R +QP S+ Y V +PQ Q P+Q+ Q RP RW A G
Sbjct: 386 MASVRSGPNPVNPYQPASS-SYSVAAVPQTQNCVPCCPSQIAQPRPSARWIA------QG 438
Query: 118 QTAQGFPNIP--QFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVS 175
FPN+P +APR+S T +R ++ + T Q P PAS S
Sbjct: 439 SRPHPFPNVPGAIHPAAPRSSL--TTVRPSSSHVQVTTAHRITNTSAQITGQRPAPAS-S 495
Query: 176 AAGRQTGGYNKYP----VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQP 231
A +Y V+N AQ+ QP AV +QGQEP T++ML A P
Sbjct: 496 ATATPVHSIPQYKYAAGVQNSQQHLNAQLAQ-QP------AVCIQGQEPWTASMLVTA-P 547
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QE KQMLGERLFPLIQ M+P LAGKITGMLL+IDN+E L MLE S S+ EEAVA LQ
Sbjct: 548 QEPKQMLGERLFPLIQAMHPTLAGKITGMLLDIDNSEPLRMLESPVSRCSRAEEAVATLQ 607
Query: 292 AHQAKQAAVK 301
AHQ K+AA K
Sbjct: 608 AHQVKEAAQK 617
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K+DR L ++ Q
Sbjct: 225 DEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQ 282
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+S++ SKG GFV F + E A +A+ +MNG ++ + ++V + +++R+A L + +
Sbjct: 131 VSDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTG-TKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G + G F
Sbjct: 190 FTNVYIKNFGDRMDDETLNGLF 211
>gi|2393873|gb|AAB70164.1| poly(A)-binding protein testis-specific isoform [Mus musculus]
Length = 603
Score = 237 bits (604), Expect = 6e-60, Method: Compositional matrix adjust.
Identities = 156/310 (50%), Positives = 190/310 (61%), Gaps = 27/310 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E GRSKGFGFVCFSSPEEATKAV+EMNGRI+ +KPLYVALAQRKE+R+AHL +QY+QR
Sbjct: 301 MTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQR 360
Query: 61 IANMRMQ-QMGQLFQPGSTGGYFVPTLPQPQRFY--GPTQMTQIRPQPRWAAAPQMRPSG 117
+A++R +QP S+ Y V +PQ Q P+Q+ Q RP RW A G
Sbjct: 361 MASVRSGPNPVNPYQPASS-SYSVAAVPQTQNCVPCCPSQIAQPRPSARWIA------QG 413
Query: 118 QTAQGFPNIP--QFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVS 175
FPN+P +APR+S T +R ++ + T Q P PAS S
Sbjct: 414 SRPHPFPNVPGAIHPAAPRSSL--TTVRPSSSHVQVTTAHRITNTSAQITGQRPAPAS-S 470
Query: 176 AAGRQTGGYNKYP----VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQP 231
A +Y V+N AQ+ QP AV +QGQEP T++ML A P
Sbjct: 471 ATATPVHSIPQYKYAAGVQNSQQHLNAQLAQ-QP------AVCIQGQEPWTASMLVTA-P 522
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QE KQMLGERLFPLIQ M+P LAGKITGMLL+IDN+E L MLE S S+ EEAVA LQ
Sbjct: 523 QEPKQMLGERLFPLIQAMHPTLAGKITGMLLDIDNSEPLRMLESPVSRCSRAEEAVATLQ 582
Query: 292 AHQAKQAAVK 301
AHQ K+AA K
Sbjct: 583 AHQVKEAAQK 592
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K+DR L ++ Q
Sbjct: 200 DEGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGRAQKKDDRHTELKHKFEQ 257
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 45/82 (54%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+S++ SKG GFV F + E A +A+ +MNG ++ + ++V + +++R+A L + +
Sbjct: 106 VSDENGSKGHGFVHFETEEAAERAIEKMNGMLLNDRKVFVGRFKSQKEREAELGTG-TKE 164
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G + G F
Sbjct: 165 FTNVYIKNFGDRMDDETLNGLF 186
>gi|148539604|ref|NP_001091917.1| polyA-binding protein [Strongylocentrotus purpuratus]
gi|126722149|emb|CAM57104.1| polyA-binding protein [Strongylocentrotus purpuratus]
Length = 640
Score = 234 bits (598), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 164/310 (52%), Positives = 195/310 (62%), Gaps = 26/310 (8%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
MS+D SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRK++R+A LASQYMQ
Sbjct: 326 MSDDKANSKGFGFVCFSSPEEATKAVTEMNGRILVAKPLYVALAQRKDERRAQLASQYMQ 385
Query: 60 RIA-NMRM-QQMGQLFQPGS----TGGYFVPTLPQPQRFYGPT-QMTQIRPQPRWAAAPQ 112
R+A +R+ QQ Q QP + T Y +PQ QR P Q+ Q+R PRW+ PQ
Sbjct: 386 RVAPQVRVGQQASQ--QPVNPVYPTMAYHYAAMPQAQRNIFPAGQLAQVR-HPRWSQQPQ 442
Query: 113 M-RPSGQTAQGFPNIP-----QFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPM 166
R + Q F IP QF APRA T +R + R + G R GG M
Sbjct: 443 QARTAAQP--NFQTIPGAAGRQF-GAPRAGTATGQVRQPMPATRVPVQAAPAGQRVGG-M 498
Query: 167 QAPGPASVS-AAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAA-AGVQAVHVQGQEPLTST 224
AP + AG Q +YP P+ + G PA VQA+HV GQEPLTS
Sbjct: 499 GAPTQQQMRLGAGAQLSAAKQYP---KFAVPRQGMPGQMPAENVPVQALHVPGQEPLTSA 555
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
MLA+A PQEQKQMLGERLF +I + +LAGKITGMLLEIDN+ELL+MLE E+L+ KVE
Sbjct: 556 MLASALPQEQKQMLGERLFSIISETHKDLAGKITGMLLEIDNSELLHMLEVQEALEKKVE 615
Query: 285 EAVAVLQAHQ 294
EAV VL HQ
Sbjct: 616 EAVQVLMNHQ 625
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M +D +SKGFGF+ F E A V +NG + + LY AQ+K +R A L +++
Sbjct: 224 MFDDSKSKGFGFISFEDHEAANDFVKTINGSEVNGRTLYAGRAQKKAERAAELKARF 280
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 20/80 (25%), Positives = 43/80 (53%), Gaps = 1/80 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G +KG+GFV F + E A KA+ ++NG ++ K +YV +++R + + ++
Sbjct: 133 DENGVNKGYGFVHFETQEAANKAIEKVNGMLLNGKKVYVGYFIPRKERLMQMGD-HQKQF 191
Query: 62 ANMRMQQMGQLFQPGSTGGY 81
N+ ++ + + G +
Sbjct: 192 TNVFIKNLAEDVDDGKLAEF 211
>gi|395545876|ref|XP_003774823.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 621
Score = 234 bits (597), Expect = 3e-59, Method: Compositional matrix adjust.
Identities = 156/317 (49%), Positives = 188/317 (59%), Gaps = 41/317 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E G S+GFGFVCFS+P+EA KAVTEMNG+++ SKPLYVALAQRKE+R+AHL +QYM+R
Sbjct: 317 MMEGGHSRGFGFVCFSAPDEAAKAVTEMNGKLVTSKPLYVALAQRKEERQAHLTNQYMRR 376
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQPQ---RFYGPTQMTQIRPQPRWAAAPQMR 114
+AN++ + QP S+ Y + T+P Q +Y Q+ Q+R W
Sbjct: 377 MANIQTFANPVLNPYHQPTSSSRYIMTTVPSSQTRTSYYPYGQVPQLRTSSHWGPPGGRL 436
Query: 115 PSGQTAQGF--PNIPQ-----FRSA----PRASTGQTVIRGANMSARPITGQSTMGPRGG 163
P T G P P+ RSA PR T Q V+ N P PR
Sbjct: 437 PPFPTVSGVVRPKTPRPPFNPMRSASGPVPRMMTTQRVVNPPNQVFGP--------PR-- 486
Query: 164 GPMQAPGPASVSAAGRQTGGYNKYPVRNPGT-QPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
P P +V G VRNP + QI QPA VH QE LT
Sbjct: 487 -PPFIPNLRAVQQYKYAAG------VRNPKRFELPMQINIPQPA------VHAAAQEVLT 533
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++MLA A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SK
Sbjct: 534 ASMLADALPQEQKQMLGERLFPLIQVMHPALAGKITGMLLEIDNSELLHMLESPESLRSK 593
Query: 283 VEEAVAVLQAHQAKQAA 299
V+EAVAVLQAHQ K+AA
Sbjct: 594 VDEAVAVLQAHQVKEAA 610
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E GRSKGFGFV +++ E+A +AV EMNG+ + + +YV AQ+K +R+ L + Q
Sbjct: 216 DERGRSKGFGFVSYATHEDAQRAVDEMNGKELNGRRIYVGRAQKKGERQTELKRHFEQ 273
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+S++ SKG+GFV F + E A KA+ +MNG ++ S ++V + +++R+ L ++ +
Sbjct: 122 VSDENGSKGYGFVHFETQESAEKAIEKMNGIVLKSLKVFVGHFKSRKERELELGAR-ARE 180
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ G F
Sbjct: 181 FTNVYIKNFGEDMDNARLGEIF 202
>gi|194044632|ref|XP_001927442.1| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Sus scrofa]
Length = 610
Score = 234 bits (596), Expect = 4e-59, Method: Compositional matrix adjust.
Identities = 154/313 (49%), Positives = 187/313 (59%), Gaps = 49/313 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QY+QR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYIQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQP---QRFY--GPTQMTQIRPQPRWAAAPQ 112
++ MR +G L QP S YF+P +PQP +Y GP ++P PRW A P
Sbjct: 386 LSTMRALGSPLLGSLQQPTS---YFLPAVPQPPAQSPYYASGPP----VQPPPRWTAQPP 438
Query: 113 MRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPI--------TGQSTMGPRGGG 164
RPS + + + S P +S+ Q I RP+ G T GP G
Sbjct: 439 -RPSCASVVRPAAVSRRPSVPISSSRQVSIH----VPRPVPQTQGVANIGTQTTGPGVMG 493
Query: 165 PMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
GP T +N V+ PG V V QEPLT++
Sbjct: 494 CATPSGPLLTHKCCSAT--HNSPRVQEPG-------------------VRVPRQEPLTAS 532
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
+LAAA EQKQM+GERL+PLI M+ +LAGKITGMLLEIDN+ELL MLE ESL +KVE
Sbjct: 533 VLAAAPLHEQKQMIGERLYPLIYNMHTQLAGKITGMLLEIDNSELLLMLESPESLSAKVE 592
Query: 285 EAVAVLQAHQAKQ 297
EA+AVLQAHQA +
Sbjct: 593 EALAVLQAHQAME 605
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ G S+GFGFV F E+A KAVT+MNG+ + + LYV AQ++ +R+ L ++ Q
Sbjct: 225 DDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D S+GFGFV F + E A A+ MNG ++ + ++V + + +R+A L ++ ++
Sbjct: 131 VCDDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALE- 189
Query: 61 IANMRMQQM 69
N+ ++ +
Sbjct: 190 FTNIYVKNL 198
>gi|395818359|ref|XP_003782600.1| PREDICTED: polyadenylate-binding protein 1, partial [Otolemur
garnettii]
Length = 539
Score = 234 bits (596), Expect = 5e-59, Method: Compositional matrix adjust.
Identities = 149/279 (53%), Positives = 172/279 (61%), Gaps = 42/279 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 294 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 353
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 354 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 407
Query: 116 SGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVS 175
G F N+P GA A P STM P Q P
Sbjct: 408 QGARPHPFQNMP----------------GAIRPAAPRPPFSTMRPASS---QVPRXXXXX 448
Query: 176 AAGRQTGGYNKYP--VRNP--GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQP 231
A R Y KY VRNP Q Q+ QP AVHVQGQEPLT++MLA+A P
Sbjct: 449 AV-RTVPQY-KYAAGVRNPQQHLNAQPQVTMQQP------AVHVQGQEPLTASMLASAPP 500
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELL 270
QEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL
Sbjct: 501 QEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELL 539
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A MNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 193 DESGKSKGFGFVSFERHEDAQXXXXXMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 250
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ + N+ +
Sbjct: 105 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYI 163
Query: 67 QQMGQ 71
+ G+
Sbjct: 164 KNFGE 168
>gi|47217896|emb|CAG05018.1| unnamed protein product [Tetraodon nigroviridis]
Length = 558
Score = 233 bits (595), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 156/307 (50%), Positives = 179/307 (58%), Gaps = 77/307 (25%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 313 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 372
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+A +R +P P P Q P P PSG
Sbjct: 373 MATVR-------------------AVPNP--VLNPYQ-----PAP---------PSGYFM 397
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQ 180
P QT R A SA + Q PR R+
Sbjct: 398 AAIP--------------QTQNRAAYYSANQL-AQLRPSPRWND-------------SRE 429
Query: 181 TGGYNKYP--VRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
KY VRNP +QPQ + QPA V VQGQEPLT++MLA+A PQEQ
Sbjct: 430 CAHSYKYAAGVRNPQQHMASQPQVAMQ--QPA------VLVQGQEPLTASMLASAPPQEQ 481
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
KQMLGERLFPLIQ ++P LAGKITGMLLEIDN+ELL+MLE ESL+SK++EAVAVLQAHQ
Sbjct: 482 KQMLGERLFPLIQDVHPSLAGKITGMLLEIDNSELLHMLESPESLRSKMDEAVAVLQAHQ 541
Query: 295 AKQAAVK 301
AK+AA K
Sbjct: 542 AKEAAQK 548
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 118 VCDENGSKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-ARE 176
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 177 FTNVYIKNFGE 187
>gi|301763992|ref|XP_002917400.1| PREDICTED: polyadenylate-binding protein 1-like [Ailuropoda
melanoleuca]
Length = 611
Score = 233 bits (594), Expect = 7e-59, Method: Compositional matrix adjust.
Identities = 150/312 (48%), Positives = 188/312 (60%), Gaps = 48/312 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ +R +G QP S YF+P +PQP +Y + ++P PRW A P
Sbjct: 386 LSTVRALGGPLLGSFQQPAS---YFLPAVPQPPAQAAYYASS--PSVQPAPRWTAQP--- 437
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS- 173
PR S+ +++R M RP Q + + PGP +
Sbjct: 438 ------------------PRVSSA-SMVRPPAMLRRP-PAQVNSVRQASTQVPPPGPHTQ 477
Query: 174 -VSAAGRQTGGYNKY-------PVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
V+ G QT G + PV A G++ +A V + GQEPLT++M
Sbjct: 478 RVANIGTQTTGASGVGYSTPTGPVLTHKYSSAAHNPGVRESA-----VCIPGQEPLTASM 532
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LAAA EQKQM+GERL+PLI + +LAGKITGMLLEIDN+ELL MLE ESL +KVEE
Sbjct: 533 LAAAPLHEQKQMIGERLYPLIYDTHTQLAGKITGMLLEIDNSELLLMLESPESLNAKVEE 592
Query: 286 AVAVLQAHQAKQ 297
A+AVLQAHQA +
Sbjct: 593 ALAVLQAHQATE 604
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G S+GFGFV F EEA KAV +MNG+ + + LYV AQ++ +R+ L ++ Q
Sbjct: 223 MRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ M+
Sbjct: 131 VCDDHGSRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAME- 189
Query: 61 IANMRMQQM 69
N+ ++ +
Sbjct: 190 FTNIYVKNL 198
>gi|426242065|ref|XP_004014898.1| PREDICTED: polyadenylate-binding protein 1-like [Ovis aries]
Length = 611
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 149/307 (48%), Positives = 181/307 (58%), Gaps = 39/307 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP ++YG I+P PRW A P
Sbjct: 386 LSTMRALGGPVLGSFQQPAS---YFLPAVPQPPAQAQYYGSG--PPIQPAPRWTAQP--- 437
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
PR S + R + P+ + P P V
Sbjct: 438 ------------------PRPSCDRLPARVSRRPLAPVGSSRQLSTHM--PHLVPHTQRV 477
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQ----AVHVQGQEPLTSTMLAAAQ 230
+ G QT G + P ++P PA + AV V GQEPLT++ LAAA
Sbjct: 478 ANIGTQTIGPSVTGCSTP-SRPLLTHKYSTPAHCTDRVQEPAVCVLGQEPLTASTLAAAP 536
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
EQKQM+GERLFPL+ ++ LAGKITGMLLEIDN+ELL MLE ESL +KVEEA+AVL
Sbjct: 537 LHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALAVL 596
Query: 291 QAHQAKQ 297
QAHQA +
Sbjct: 597 QAHQATE 603
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ G S+GFGFV F EEA KAV MNGR + + LYV AQ++ +R+ L ++ Q
Sbjct: 225 DDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+GFGFV F + E A A++ MNG ++ + ++V + + +R+ L ++ M+
Sbjct: 131 VCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME- 189
Query: 61 IANMRMQQM 69
N+ ++ +
Sbjct: 190 FTNIYVKNL 198
>gi|348563863|ref|XP_003467726.1| PREDICTED: polyadenylate-binding protein 1-like [Cavia porcellus]
Length = 613
Score = 233 bits (593), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 150/311 (48%), Positives = 184/311 (59%), Gaps = 44/311 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E SKGFGFVCFSSPEEATKAVTEMNG I+G+KPLYVALAQRKE+RKA L +QYM+R
Sbjct: 326 MTEGDHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQRKEERKAILTNQYMKR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQPQRFYGPTQ---------MTQIRPQPRWA 108
++ ++ +G QP S YF+PT QP P Q + ++P PRW
Sbjct: 386 LSTVQALSRPVLGSFQQPNS---YFLPTGAQP-----PAQAPCCGSSGSVAPVQPAPRWT 437
Query: 109 AAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA 168
A PQ RPS + P +P+ R + +R A+ P A
Sbjct: 438 AQPQ-RPSTASVVRPPGLPR-----RPQANVSSVRQASTQV---------------PHLA 476
Query: 169 PGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQ--AVHVQGQEPLTSTML 226
P V+ G QT G P P + A GV AVHV GQEPLT++ML
Sbjct: 477 PHTKKVANIGTQTMGRAACSTEGPSLLPCTCSSTVH-IAHGVPEPAVHVPGQEPLTASML 535
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
AAA EQKQM+GERL+ LI +Y LAGKITGMLLEIDN++LL MLE ESL++K+EEA
Sbjct: 536 AAAPLHEQKQMIGERLYHLIPEVYASLAGKITGMLLEIDNSDLLLMLESPESLQAKIEEA 595
Query: 287 VAVLQAHQAKQ 297
VAVLQAHQA +
Sbjct: 596 VAVLQAHQAME 606
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+GFGFV F EEA KAV MNG+ + + LYV AQ++ +R+ L ++ Q
Sbjct: 228 GHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRAERQNELKRRFEQ 282
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L +Q ++ N+ +
Sbjct: 137 SRGFGFVHFETNEAAQQAIGTMNGMLLNDRKVFVGHFKSQREREAELGAQALE-FTNIYV 195
Query: 67 QQM 69
+ +
Sbjct: 196 KNL 198
>gi|194224457|ref|XP_001500563.2| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Equus
caballus]
Length = 612
Score = 232 bits (592), Expect = 1e-58, Method: Compositional matrix adjust.
Identities = 151/307 (49%), Positives = 184/307 (59%), Gaps = 37/307 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRIIG+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIIGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P + QP YG + Q P PRW P
Sbjct: 386 LSTMRALGGPFLGSFQQPTS---YFLPAMAQPPAQAEHYGSSPSRQ--PAPRWTTQP--- 437
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGG-PMQAPGPAS 173
PR S+ +++R MS RP+ ++ P P
Sbjct: 438 ------------------PRPSSA-SMVRPPAMSRRPLAQVCSVRQTSTQVPYLVPHTQR 478
Query: 174 VSAAGRQTGGYNKYPVRNPG-TQPQAQIGGIQPAAAGVQ--AVHVQGQEPLTSTMLAAAQ 230
V+ G QT G PG + P + P VQ AV + G EPLT++MLAAA
Sbjct: 479 VANIGTQTPGPGGAGCSTPGRSLPTHRYFLATPNTHEVQEPAVRILGPEPLTASMLAAAP 538
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
+QKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL +KVEEA+AVL
Sbjct: 539 LHQQKQMIGERLYPLIYEVHTQLAGKITGMLLEIDNSELLLMLESPESLNAKVEEALAVL 598
Query: 291 QAHQAKQ 297
QAHQA +
Sbjct: 599 QAHQAME 605
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ G S+GFGFV F EEA KAV +MNG + + LYV AQ++ +R+ L ++
Sbjct: 225 DDSGHSRGFGFVNFEKHEEAQKAVMDMNGMQVSGRLLYVGRAQKRGERQNELKRRF 280
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 18/56 (32%), Positives = 36/56 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
+ +D S+GFGFV F + E A +A++ MNG ++ + ++V + + +R+A L ++
Sbjct: 131 VCDDHGSRGFGFVHFETHEAAQQAISTMNGMLLNDRKVFVGHFKSRREREAELGAR 186
>gi|419961|pir||JN0573 polyadenylate-binding protein - fruit fly (Drosophila melanogaster)
Length = 598
Score = 232 bits (591), Expect = 2e-58, Method: Compositional matrix adjust.
Identities = 154/322 (47%), Positives = 193/322 (59%), Gaps = 47/322 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E+GRSKGFGFVCF+ EAT AVTE+NGR++GS LYVALAQRKE+RKA LASQYM+
Sbjct: 300 VDEEGRSKGFGFVCFNPESEATCAVTELNGRVVGS--LYVALAQRKEERKADLASQYMRH 357
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAP--------- 111
+ MRMQQ+GQ QP + G+FVPTLP QRF+G TQ+R PRW P
Sbjct: 358 MTGMRMQQLGQ--QPNAASGFFVPTLPSNQRFFGSQVATQMRNTPRWQVRPPAAIQGVQA 415
Query: 112 QMRPSGQTAQGFPNIP-QFRSAPRASTGQTVIRGA-----------NMSARPITGQSTMG 159
+G +P QFRSA A Q ++G N AR ITGQ+
Sbjct: 416 GAAAAGGFQGTAGAVPTQFRSAG-ARGAQPQVQGTHAAAAAANNMRNTGARAITGQA--A 472
Query: 160 PRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQG 217
P MQ PG A ++T Y KY +RNP Q Q P +Q +
Sbjct: 473 PN----MQIPGAQIAGGAQQRTSNY-KYTSNMRNPPVLHQTQ-----PIPQQLQG---KN 519
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
E L +++LA A+PQEQKQ GERL+P+I+ M+ LAGKITGMLLEI+N+ELL+M E
Sbjct: 520 SEKLIASLLANAKPQEQKQ--GERLYPMIEHMHANLAGKITGMLLEIENSELLHM--DQE 575
Query: 278 SLKSKVEEAVAVLQAHQAKQAA 299
+LK+KVEEAVAVLQ H+ + A
Sbjct: 576 ALKAKVEEAVAVLQVHRVTEPA 597
Score = 53.9 bits (128), Expect = 9e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV F + E A AV +NG+ G K LYVA AQ+K +R+ L ++
Sbjct: 204 EDGKSKGFGFVAFETTEAAEAAVQALNGKGEG-KSLYVARAQKKAERQQELKRKF 257
>gi|343959560|dbj|BAK63637.1| polyadenylate-binding protein 1 [Pan troglodytes]
Length = 284
Score = 231 bits (589), Expect = 3e-58, Method: Compositional matrix adjust.
Identities = 147/289 (50%), Positives = 185/289 (64%), Gaps = 31/289 (10%)
Query: 28 MNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM--QQMGQLFQPGSTGGYFVPT 85
MNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR+A++R + +QP GYF+
Sbjct: 1 MNGRIVATKPLYVALAQRKEERQAHLTNQYMQRMASVRAVPNPVINPYQPAPPSGYFMAA 60
Query: 86 LPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGFPNIP-QFR-SAPRASTGQT 140
+PQ Q +Y P+Q+ Q+RP PRW A G F N+P R +APR +
Sbjct: 61 IPQTQNRAAYYPPSQIAQLRPSPRWTA------QGARPHPFQNMPGAIRPAAPRPPF--S 112
Query: 141 VIRGAN------MSARPI--TGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNP 192
+R A+ MS + + T TMGPR A PA + + + P ++
Sbjct: 113 TMRPASSQVPRVMSTQRVANTSTQTMGPRPAAAAAAATPAVRTVPQYKYAAGVRNPQQHL 172
Query: 193 GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPE 252
QPQ + QPA VHVQGQEPLT++ML +A PQEQKQMLGERLFPLIQ M+P
Sbjct: 173 NAQPQVTMQ--QPA------VHVQGQEPLTASMLVSAPPQEQKQMLGERLFPLIQAMHPT 224
Query: 253 LAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 225 LAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQK 273
>gi|410953832|ref|XP_003983574.1| PREDICTED: polyadenylate-binding protein 1-like [Felis catus]
Length = 616
Score = 231 bits (588), Expect = 4e-58, Method: Compositional matrix adjust.
Identities = 159/314 (50%), Positives = 194/314 (61%), Gaps = 47/314 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ +R +G QP S YF+P +PQP +Y + + ++P PRW A P R
Sbjct: 386 LSTVRALGGPLLGSFQQPAS---YFLPAVPQPPAQTAYYASS--SPMQPAPRWTAQPP-R 439
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGG---PMQAPGP 171
PS +P P AS +IR M RP S G R P P
Sbjct: 440 PSST----YP--------PAAS----MIRPPAMLRRPPAQVS--GVRQASTQVPPTVPHT 481
Query: 172 ASVSAAGRQTGGYNK--YPVRNPGTQPQAQIGGIQPAAA----GVQ--AVHVQGQEPLTS 223
V+ G QT G + YP P + + ++A GVQ AV + GQEPLT+
Sbjct: 482 QRVANIGTQTTGASGAGYPA------PSGPLLTHKYSSATYNHGVQEPAVRIPGQEPLTA 535
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
+MLAAA EQKQM+GERL+PLI + +LAGKITGMLLEIDN+ELL MLE ESL +KV
Sbjct: 536 SMLAAAPLHEQKQMIGERLYPLIYDAHTQLAGKITGMLLEIDNSELLLMLESPESLNAKV 595
Query: 284 EEAVAVLQAHQAKQ 297
EEA+AVLQAHQA +
Sbjct: 596 EEALAVLQAHQAAE 609
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ G S+GFGFV F EEA KAVT+MNG+ + + LYV AQ++ +R+ L ++ Q
Sbjct: 225 DDSGHSRGFGFVNFEKHEEAQKAVTDMNGKEVRGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ M+
Sbjct: 131 VCDNHGSRGFGFVHFETHEAAQQAIVTMNGMLLNDRKVFVGHFKSRREREAELGARAME- 189
Query: 61 IANMRMQQM 69
N+ ++ +
Sbjct: 190 FTNIYVKNL 198
>gi|354476610|ref|XP_003500517.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 637
Score = 229 bits (584), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 154/314 (49%), Positives = 185/314 (58%), Gaps = 48/314 (15%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL++QYMQR+A
Sbjct: 338 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLSNQYMQRMA 397
Query: 63 NMRMQQMGQL--FQPGST-GGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPS 116
+ + FQP GYF+ T Q Q +Y P Q TQ P R +A
Sbjct: 398 STSAVSSPVINPFQPAQAPSGYFMTTTSQTQNCGAYYAPNQTTQQGPGHRGSA------Q 451
Query: 117 GQTAQGFPN---------IPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ 167
G A F N IP F ++ AS+ +R +MS G ++ G P
Sbjct: 452 GARAHPFQNMSSAIQPATIPSFSTSGPASS--QALR--SMSTHR-AGSASTQMMGSHPTA 506
Query: 168 APGPASVSAAGRQTGGYNKYPVRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTS 223
P P AG VRNP QPQ + AV VQG+ LT+
Sbjct: 507 RPVPQYKYTAG----------VRNPPQHLSAQPQVTMQR--------SAVPVQGKASLTA 548
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
+MLA+A PQ QKQMLGE LF LIQ M+P LAGKITGMLLEIDN EL +MLE E L +K+
Sbjct: 549 SMLASASPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLELRHMLESPECLHTKI 608
Query: 284 EEAVAVLQAHQAKQ 297
+EA+AVLQAHQAK+
Sbjct: 609 DEAIAVLQAHQAKE 622
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ 282
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + EEA +A+ +MNG + + ++V + + DR+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGAR-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ +G+ G F
Sbjct: 190 FTNVYIKNLGEDMDDERLQGLF 211
>gi|351703575|gb|EHB06494.1| Polyadenylate-binding protein 1-like protein [Heterocephalus
glaber]
Length = 605
Score = 229 bits (583), Expect = 1e-57, Method: Compositional matrix adjust.
Identities = 146/304 (48%), Positives = 178/304 (58%), Gaps = 42/304 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNG I+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGCIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQP----QRFYGPTQMTQIRPQPRWAAAPQM 113
++ ++ MG QP S YF+P + QP + G + ++P PRW A PQ
Sbjct: 386 LSTVQALGRPVMGSFQQPNS---YFLPAVAQPPAQATCYGGSGSVAPVQPAPRWTAQPQR 442
Query: 114 RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
+ S+ R ++ Q P AP
Sbjct: 443 ASLVRPPGLPRRPRAHVSSVRQASTQV------------------------PYLAPHTKK 478
Query: 174 VSAAGRQTGGYNK-YPVRNPGTQPQAQIGGI-QPAAAGVQAVHVQGQEPLTSTMLAAAQP 231
V+ G QT G ++ P G+ +PA VHV GQEPLT++MLAAA
Sbjct: 479 VANIGTQTMGASRACSTEGPSLSAVLTAHGVPEPA------VHVPGQEPLTASMLAAAPL 532
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
EQKQM+GERL+ LI +Y LAGKITGMLLEIDN+ELL MLE ESL++KVEEAVAVLQ
Sbjct: 533 HEQKQMIGERLYRLIPEVYAALAGKITGMLLEIDNSELLLMLESPESLQAKVEEAVAVLQ 592
Query: 292 AHQA 295
AHQA
Sbjct: 593 AHQA 596
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+GFGFV F EEA KAV MNG+ + + LYV AQ++ +R+ L ++ Q
Sbjct: 228 GHSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQQLYVGRAQKRGERQNELKRRFEQ 282
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 23/75 (30%), Positives = 42/75 (56%), Gaps = 8/75 (10%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ-------YMQ 59
S+GFGFV F + E A +A++ MNG ++ + ++V + +R+A L +Q Y++
Sbjct: 137 SRGFGFVHFETNEAAQQAISTMNGMLLNDRKVFVGHFKSHREREAELGAQALAFTNIYVK 196
Query: 60 RI-ANMRMQQMGQLF 73
+ +M Q + LF
Sbjct: 197 NLHVDMDEQGLQDLF 211
>gi|281345572|gb|EFB21156.1| hypothetical protein PANDA_005635 [Ailuropoda melanoleuca]
Length = 605
Score = 228 bits (581), Expect = 3e-57, Method: Compositional matrix adjust.
Identities = 150/313 (47%), Positives = 188/313 (60%), Gaps = 49/313 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ +R +G QP S YF+P +PQP +Y + ++P PRW A P
Sbjct: 386 LSTVRALGGPLLGSFQQPAS---YFLPAVPQPPAQAAYYASS--PSVQPAPRWTAQP--- 437
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS- 173
PR S+ +++R M RP Q + + PGP +
Sbjct: 438 ------------------PRVSSA-SMVRPPAMLRRP-PAQVNSVRQASTQVPPPGPHTQ 477
Query: 174 -VSAAGRQTGGYNKY-------PVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
V+ G QT G + PV A G++ + AV + GQEPLT++M
Sbjct: 478 RVANIGTQTTGASGVGYSTPTGPVLTHKYSSAAHNPGVRES-----AVCIPGQEPLTASM 532
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK-VE 284
LAAA EQKQM+GERL+PLI + +LAGKITGMLLEIDN+ELL MLE ESL +K VE
Sbjct: 533 LAAAPLHEQKQMIGERLYPLIYDTHTQLAGKITGMLLEIDNSELLLMLESPESLNAKVVE 592
Query: 285 EAVAVLQAHQAKQ 297
EA+AVLQAHQA +
Sbjct: 593 EALAVLQAHQATE 605
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 39/60 (65%), Gaps = 1/60 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G S+GFGFV F EEA KAV +MNG+ + + LYV AQ++ +R+ L ++ Q
Sbjct: 223 MRDDIGHSRGFGFVNFEKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ M+
Sbjct: 131 VCDDHGSRGFGFVHFETHEAAHQAIATMNGMLLNDRKVFVGHFKSRREREAELGARAME- 189
Query: 61 IANMRMQQM 69
N+ ++ +
Sbjct: 190 FTNIYVKNL 198
>gi|126342328|ref|XP_001373103.1| PREDICTED: polyadenylate-binding protein 1-like [Monodelphis
domestica]
Length = 942
Score = 226 bits (577), Expect = 7e-57, Method: Compositional matrix adjust.
Identities = 153/320 (47%), Positives = 191/320 (59%), Gaps = 36/320 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E G S+GFGFVCFS+PEEA KAV+EMNG+++ +KPLYVALAQRK DR+ HL +QYMQR
Sbjct: 631 MMEGGHSRGFGFVCFSAPEEAAKAVSEMNGKLVATKPLYVALAQRKRDRQVHLTNQYMQR 690
Query: 61 IANMRMQQ--MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQP-RWAAAPQMR 114
+A+ + + +QP T YF+ LPQPQ +Y Q+ Q RP P WA
Sbjct: 691 MASFQAMSNPVFSPYQPPPTSRYFMTPLPQPQSRPAYYPYGQIPQFRPSPPHWAV----- 745
Query: 115 PSGQTA--QGFPNIPQFRSAPRAS--------TGQTVIRGANMSARPITGQSTMGPRGGG 164
P G+ Q P + + R A T +V A M+ + I S+
Sbjct: 746 PGGRFHPFQTVPGVMRPRGPAPAPAPAPFNPVTSSSVPVSALMNTQHIVNPSSQ------ 799
Query: 165 PMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
M P R Y KY VRNP + P AG+ + QEPLT
Sbjct: 800 -MLGPPNPPFMPPMRSVQQY-KYAAGVRNP-KHLNMPLPVTTPQPAGL----FEFQEPLT 852
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++MLAA PQEQKQ+LGERLFPLIQ + P LAGKITGMLLEIDN+ELL+MLE ESL++K
Sbjct: 853 ASMLAATPPQEQKQILGERLFPLIQALNPALAGKITGMLLEIDNSELLHMLESPESLQAK 912
Query: 283 VEEAVAVLQAHQAKQAAVKK 302
V+EAVAVL+AHQAK+AA KK
Sbjct: 913 VDEAVAVLEAHQAKEAAEKK 932
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV + E+A +AV EMNG+ K +YV AQ+K +R+ L + Q
Sbjct: 530 DESGKSKGFGFVSYEKHEDAQRAVDEMNGKEFNGKRIYVGRAQKKGERQTELKRHFEQ 587
Score = 42.7 bits (99), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 20/71 (28%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+S++ SKG+GFV F + + A KA+ +MNG + + +YV + +++R+ L ++ +
Sbjct: 436 ISDENGSKGYGFVHFENQQAADKAIEKMNGVRLNNLKVYVGRFKSRKERELELGAR-ARE 494
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 495 FTNVYIKNFGE 505
>gi|221121498|ref|XP_002156904.1| PREDICTED: polyadenylate-binding protein 1-like isoform 1 [Hydra
magnipapillata]
Length = 635
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 146/303 (48%), Positives = 184/303 (60%), Gaps = 27/303 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFSSP+EATKAVTEMNGRI+ +KPLYVALAQRKE+R+A L++Q++QR+
Sbjct: 328 DEKGISKGFGFVCFSSPDEATKAVTEMNGRILVTKPLYVALAQRKEERRAQLSTQFLQRV 387
Query: 62 ANMR------MQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRP 115
+R M Q G FQ G G +++PT+P QR + + QI +PRW + ++
Sbjct: 388 NPLRYNASGTMPQAGYSFQAGQPG-FYIPTVPTNQRPFITQSVNQI-TRPRWQSQAPVQQ 445
Query: 116 SGQTAQGFPNIPQFRSA-----PRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
Q ++ Q R+ PR V R P Q MG R Q P
Sbjct: 446 IPANTQYASHVTQIRAGAAPPRPRHQGAPNVAR-----REPAPYQPGMGTRTMPSQQVPI 500
Query: 171 PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGI--QPAAAGVQAVHVQGQEPLTSTMLAA 228
+V A +Q Y KY NP T+ Q G + QP A A +QG + LTST+LA
Sbjct: 501 RPNVPAVAQQRTAY-KY---NPNTRNQYPAGQMIGQPDQA---AAIIQGPDQLTSTILAT 553
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A P EQKQM+GERLFPL+Q P LAGKITGMLLEIDN+ELL+MLE + L++KVEEAV
Sbjct: 554 ATPTEQKQMIGERLFPLVQEFQPHLAGKITGMLLEIDNSELLHMLESRDLLRAKVEEAVQ 613
Query: 289 VLQ 291
VLQ
Sbjct: 614 VLQ 616
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 31/65 (47%), Positives = 41/65 (63%), Gaps = 4/65 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY--- 57
M+E G+SKGFGFV F +PE A AV E+NG I + L V AQ+K +R L S++
Sbjct: 224 MAESGKSKGFGFVAFEAPEAAEAAVNELNGLEIEGRKLVVCRAQKKAERTMELKSRFEAQ 283
Query: 58 -MQRI 61
M+RI
Sbjct: 284 KMERI 288
Score = 38.5 bits (88), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 18/65 (27%), Positives = 36/65 (55%), Gaps = 1/65 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
S+G+GFV + + E A +A+ ++NG ++ K ++V K +R L Q ++ N+ +
Sbjct: 138 SRGYGFVHYETKEAAHEAIAKVNGMMLNDKKVFVGEFMSKRERLEKLGDQ-AKKFKNVFV 196
Query: 67 QQMGQ 71
+ G
Sbjct: 197 KNFGD 201
>gi|395548760|ref|XP_003775245.1| PREDICTED: polyadenylate-binding protein 1-like [Sarcophilus
harrisii]
Length = 730
Score = 226 bits (576), Expect = 1e-56, Method: Compositional matrix adjust.
Identities = 142/308 (46%), Positives = 182/308 (59%), Gaps = 17/308 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M +GRSKGFGFVCFS+PEEAT AVTEMNGR++ SKPLYVALAQRKE+RKAHLA+QY+QR
Sbjct: 425 MMNNGRSKGFGFVCFSAPEEATTAVTEMNGRLVASKPLYVALAQRKEERKAHLANQYVQR 484
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A +R L ++ G++ YF L Q Q +Y P Q+R P W+A
Sbjct: 485 MARIRSTATPTLGPYRTGASSRYFFTPLTQSQSRGAYYSPNHFAQLRSSPHWSAQRVRSH 544
Query: 116 SGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVS 175
S QT G P P+F +P ST + + +S R T + T P+ PG +
Sbjct: 545 SFQTITG-PIHPKFCRSPLMSTSH--MSTSRISRRITTQRVTSPAHTLRPLCPPGTTFIP 601
Query: 176 AAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQ---AVHVQGQEPLTSTMLAAAQPQ 232
R T Y KY N Q GI P + H+ GQEP + + A PQ
Sbjct: 602 TL-RSTQQY-KYTGANYN---HYQFIGIPPRIPTLTRQLVAHLPGQEPAIPST-STALPQ 655
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
QK++LGERLFPLIQ ++P LAGKITGMLL+ N+E+L ML E L+SK+ EA+AVLQA
Sbjct: 656 PQKRVLGERLFPLIQDLHPTLAGKITGMLLDRQNSEILRMLNSPECLRSKISEAMAVLQA 715
Query: 293 HQAKQAAV 300
H K+A +
Sbjct: 716 HNEKEAIL 723
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 36/60 (60%), Gaps = 1/60 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D GRSKGFGFV F E+A A+ MNG+ + + +Y AQ+K +R+ L + Q
Sbjct: 322 MRDDCGRSKGFGFVNFQKHEDAQNAIDNMNGKELNGRQIYAGRAQKKLERQTQLQRHFEQ 381
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+++D SKG+GFV F E A +A+ +MNG ++ ++V + ++DR++ L +Q +
Sbjct: 230 ITDDNGSKGYGFVHFEHRESAERAIQKMNGILLNDLKIFVGHFKSRKDRESELGAQ-TRE 288
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 289 FTNVYIKNFGE 299
>gi|119596297|gb|EAW75891.1| hCG2019100, isoform CRA_e [Homo sapiens]
Length = 617
Score = 225 bits (573), Expect = 2e-56, Method: Compositional matrix adjust.
Identities = 147/296 (49%), Positives = 178/296 (60%), Gaps = 43/296 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG +T +P PRW + P R
Sbjct: 386 LSTMRTLSNPLLGSFQQPSS---YFLPAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-R 441
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQT---VIRGANMSARPIT-GQSTMGPRGGGPMQAPG 170
PS + P +P+ A +S Q V R + R G T GP G G PG
Sbjct: 442 PSCASMVRPPVVPRRPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCC-TPG 500
Query: 171 ----PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTML 226
P S+A T Y V+ P AVH+ GQEPLT++ML
Sbjct: 501 RPLLPCKCSSAAHST-----YRVQEP-------------------AVHIPGQEPLTASML 536
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
AAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL +K
Sbjct: 537 AAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAK 592
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 42.7 bits (99), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ ++ N+ +
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE-FTNIYV 195
Query: 67 QQM 69
+ +
Sbjct: 196 KNL 198
>gi|157818977|ref|NP_001099678.1| poly(A) binding protein, cytoplasmic 6 [Rattus norvegicus]
gi|149027506|gb|EDL83096.1| similar to RIKEN cDNA 4932702K14 (predicted) [Rattus norvegicus]
gi|197246058|gb|AAI68959.1| Poly(A) binding protein, cytoplasmic 3 [Rattus norvegicus]
Length = 643
Score = 224 bits (572), Expect = 3e-56, Method: Compositional matrix adjust.
Identities = 155/321 (48%), Positives = 187/321 (58%), Gaps = 48/321 (14%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL++QYMQR+A
Sbjct: 338 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLSNQYMQRMA 397
Query: 63 NMRMQQMGQL--FQP--GSTGGYFVPTLPQPQR--FYGPTQMTQIRPQPRWAAAPQMRPS 116
+ + FQP G +G + T P R +Y P Q TQ P R +A
Sbjct: 398 STSAVPNPGINPFQPAQGLSGYFMTATAPTQNRGTYYAPNQTTQQGPSARGSA------Q 451
Query: 117 GQTAQGFPNI----------PQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPM 166
G A F N+ P F ++ S+ R A+ S + + GP
Sbjct: 452 GTRAHPFQNMSSAIHPSNTMPSFSTSGPTSSQAVRHRTASTSTQMM-----------GPH 500
Query: 167 QAPGPASVSAAGRQTGGYNKYP--VRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEP 220
A + + A R Y KY VRNP TQPQ AV QG+E
Sbjct: 501 PAAASTAAAPAARTVTQY-KYTAGVRNPPQHLNTQPQV--------TTQRSAVSAQGKES 551
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT +MLA+A PQ QKQMLGE LF LIQ M+P LAGKITGMLLEIDN EL +MLE E L
Sbjct: 552 LTVSMLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLELRHMLESPECLH 611
Query: 281 SKVEEAVAVLQAHQAKQAAVK 301
+KV+EA+AVLQAHQAK+ + K
Sbjct: 612 TKVDEAIAVLQAHQAKETSQK 632
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ 282
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + EEA +A+ +MNG + + ++V + + DR+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ +G+
Sbjct: 190 FTNVYIKNLGE 200
>gi|148670144|gb|EDL02091.1| RIKEN cDNA 4932702K14 [Mus musculus]
Length = 642
Score = 224 bits (570), Expect = 5e-56, Method: Compositional matrix adjust.
Identities = 150/308 (48%), Positives = 182/308 (59%), Gaps = 23/308 (7%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E GRSKGFGFVCFSSPEEATKAVTEMNG+I+ +KPLYVALAQRKE+R+AHL++QYMQR+A
Sbjct: 338 EGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLSNQYMQRMA 397
Query: 63 NMRM--QQMGQLFQP--GSTGGYFVPTLPQPQRFY-GPTQMTQIRPQPRWAAAPQMRPSG 117
+ + FQP G +G T Q +R Y P Q TQ P R +A G
Sbjct: 398 STSAGPNPVVSPFQPAQGPSGYCMTATPTQSRRAYCAPNQTTQQGPSARGSA------HG 451
Query: 118 QTAQGFPN----IPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
A F N I + P ST A T MGP A PA+
Sbjct: 452 TRAHPFQNMCSTIHPSHTMPSFSTSGPTTSQAIRHRTASTSTQMMGPHPAAAAAAAAPAT 511
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQE 233
+ + + P ++P TQP + AV VQG+E LT++MLA+A PQ
Sbjct: 512 RTITQYKYTAGVRNPPQHPNTQPHV--------STQRSAVPVQGKESLTASMLASAPPQA 563
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQMLGE LF LIQ M+P LAGKITGMLLEIDN EL +MLE E L +KV+EA+AVLQAH
Sbjct: 564 QKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNIELRHMLESPECLHTKVDEAIAVLQAH 623
Query: 294 QAKQAAVK 301
QAK+ + K
Sbjct: 624 QAKETSQK 631
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ 282
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + EEA +A+ +MNG + ++V + + DR+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ +G+
Sbjct: 190 FTNVYIKNLGE 200
>gi|255652857|ref|NP_001157308.1| poly(A) binding protein, cytoplasmic 3 [Mus musculus]
gi|12855391|dbj|BAB30319.1| unnamed protein product [Mus musculus]
gi|26325704|dbj|BAC26606.1| unnamed protein product [Mus musculus]
Length = 643
Score = 222 bits (566), Expect = 2e-55, Method: Compositional matrix adjust.
Identities = 154/310 (49%), Positives = 183/310 (59%), Gaps = 26/310 (8%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E GRSKGFGFVCFSSPEEATKAVTEMNG+I+ +KPLYVALAQRKE+R+AHL++QYMQR+A
Sbjct: 338 EGGRSKGFGFVCFSSPEEATKAVTEMNGKIVATKPLYVALAQRKEERQAHLSNQYMQRMA 397
Query: 63 NMRM--QQMGQLFQP--GSTGGYFVPTLPQPQRFY-GPTQMTQIRPQPRWAAAPQMRPSG 117
+ + FQP G +G T Q +R Y P Q TQ P R +A G
Sbjct: 398 STSAGPNPVVSPFQPAQGPSGYCMTATPTQSRRAYCAPNQTTQQGPSARGSA------HG 451
Query: 118 QTAQGFPNIPQF----RSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
A F N+ + P ST A T MGP A A+
Sbjct: 452 TRAHPFQNMSSTIHPSHTMPSFSTSGPTTSQAIRHRTASTSTQMMGPH----PAAAAAAA 507
Query: 174 VSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQP 231
+ A R Y KY VRNP P Q + AV VQG+E LT++MLA+A P
Sbjct: 508 AAPATRTITQY-KYTAGVRNPPQHPNTQ----PHVSTQRSAVPVQGKESLTASMLASAPP 562
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
Q QKQMLGE LF LIQ M+P LAGKITGMLLEIDN EL +MLE E L +KV+EA+AVLQ
Sbjct: 563 QAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNIELRHMLESPECLHTKVDEAIAVLQ 622
Query: 292 AHQAKQAAVK 301
AHQAK+ + K
Sbjct: 623 AHQAKETSQK 632
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDARKAVEEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ 282
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + EEA +A+ +MNG + ++V + + DR+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEEAERAIEKMNGMFLNDHKVFVGRFKSRRDRQAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ +G+
Sbjct: 190 FTNVYIKNLGE 200
>gi|126342190|ref|XP_001379497.1| PREDICTED: polyadenylate-binding protein 1 [Monodelphis domestica]
Length = 669
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 137/309 (44%), Positives = 181/309 (58%), Gaps = 16/309 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFSS ++A KA EMNG+++ SKPLYV+LAQRKE+R+ HL +QYM R
Sbjct: 360 MMENGRSKGFGFVCFSSSKDAAKASREMNGKLVASKPLYVSLAQRKEERRMHLKNQYMYR 419
Query: 61 IANMRM--QQMGQLFQPGSTGGYFV-PTLPQPQR--FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +Q ++ YF+ P+LP + Y +Q+ Q+R PRW + P
Sbjct: 420 LAHLRSISNPVFNPYQLANSSPYFMTPSLPSQSQAALYNASQLAQLRSSPRWISKSIRPP 479
Query: 116 SGQTAQG--FPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
S T PNIP+ +P ST + GA Q +GP G P +
Sbjct: 480 SFHTLTKAICPNIPRATFSPLRSTSEIPRMGATSRVANSPAQ-MLGPLPGTGTFLPTVPN 538
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQE 233
V G YP + P QPA H+ GQE L +MLA+A P E
Sbjct: 539 VPHLKYDAGV--DYPEQPFSKSPYISTLARQPAG------HISGQESLMPSMLASALPPE 590
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QK++LGERLFP+IQ + P LAGKITGMLLE DN+E+L++LE ESL KV+EA AVLQ H
Sbjct: 591 QKRILGERLFPIIQGISPTLAGKITGMLLETDNSEILHLLESPESLHCKVKEAAAVLQTH 650
Query: 294 QAKQAAVKK 302
QAK+ K+
Sbjct: 651 QAKEVTQKE 659
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/71 (43%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M++D GRSKGFGFV F S E+A AV +MNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 257 MTDDCGRSKGFGFVSFQSHEDAQAAVDDMNGKQLNGKQIYVGRAQKKRERQTELKRHFEQ 316
Query: 60 RIANMRMQQMG 70
N ++ G
Sbjct: 317 IKQNQHIRYQG 327
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ---- 56
+S++ SKG+GFV F + E A KA+ +MNG ++ + ++V + + +R++ L +
Sbjct: 165 ISDENGSKGYGFVHFETQESAGKAIEKMNGMLLNNLKVFVGRFKSRRERESELGVKAKDY 224
Query: 57 ---YMQRIA-NMRMQQMGQLF 73
Y++ NM Q++ ++F
Sbjct: 225 TNIYIKNFGENMDDQRLTEIF 245
>gi|47223169|emb|CAG11304.1| unnamed protein product [Tetraodon nigroviridis]
Length = 642
Score = 221 bits (563), Expect = 3e-55, Method: Compositional matrix adjust.
Identities = 148/340 (43%), Positives = 193/340 (56%), Gaps = 64/340 (18%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M++ +S+GFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQR+E+RKA L ++YMQR
Sbjct: 324 MTDGPQSRGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRREERKAILTNKYMQR 383
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQP--QRFYGPTQMTQIRPQPRWAAAPQMRPSGQ 118
+A +R + GY++ T+PQP + FY P ++ +R PRW P
Sbjct: 384 LATLRTMS-SPVIDSYQQAGYYM-TVPQPPTRSFYSPNAVSAMRALPRWTGQP------H 435
Query: 119 TAQGFPNI---PQFRSAPRASTGQTVIRGANM--SARPIT--GQSTMGPRGGGP-MQAPG 170
QG I P+ S P AS Q + N+ SA+ G T+G R P + G
Sbjct: 436 RLQGPYTIVSGPRRGSTPIASVRQASTQAPNIISSAQKTNNIGTQTVGGRADIPGIPRSG 495
Query: 171 PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
S+A R + V P T+PQ +VH+QGQEPLT++MLAAA
Sbjct: 496 QYKYSSAVRN--AQHVIAVHAPPTRPQP-------------SVHIQGQEPLTASMLAAAP 540
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK-------- 282
+QKQ+LGERL+PLI ++P LAGKITGMLLEIDN+ELL+MLE ESL SK
Sbjct: 541 LMDQKQLLGERLYPLISALHPNLAGKITGMLLEIDNSELLHMLETPESLHSKVSSRSSTL 600
Query: 283 -----------------------VEEAVAVLQAHQAKQAA 299
V+EA+AVLQAH+ K+ +
Sbjct: 601 PTQSPFLIVPGFVEIQFSIVFFQVDEAIAVLQAHRVKECS 640
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 28/67 (41%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E GRS+GFGFV F+ +A KAV EMNG + K +YV AQ++ +R+ L ++ + I
Sbjct: 223 DERGRSRGFGFVNFAHHGDAQKAVDEMNGTELNGKVIYVGRAQKRLERQGELKRKF-ELI 281
Query: 62 ANMRMQQ 68
R+Q+
Sbjct: 282 KQDRIQR 288
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 41/67 (61%), Gaps = 1/67 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
SKG+GFV F + E A +A+ MNG ++ + ++V + +++R+ L S+ + + N+ +
Sbjct: 135 SKGYGFVHFETEEAANRAIETMNGMLLNDRKVFVGNFKSRKEREEELGSKAL-KFTNVYI 193
Query: 67 QQMGQLF 73
+ G+ +
Sbjct: 194 KNFGEDY 200
>gi|402590718|gb|EJW84648.1| polyadenylate-binding protein 4, partial [Wuchereria bancrofti]
Length = 519
Score = 221 bits (562), Expect = 5e-55, Method: Compositional matrix adjust.
Identities = 154/325 (47%), Positives = 194/325 (59%), Gaps = 51/325 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++GRSKGFGFVCF P+EATKAVTEMNG+++ +KPLYVALAQRKEDRKA LASQYMQR+
Sbjct: 202 DDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRL 261
Query: 62 ANMRMQQMGQL----FQPGSTGGYFVPTLPQPQRFYGPTQMT---QIR-PQPRW----AA 109
A++RM G + + PG TGG+FV + Q QR + PT Q+R PRW AA
Sbjct: 262 ASIRMHNAGSMPGTVYTPG-TGGFFVSSTLQNQRAFMPTATIPGAQMRGTTPRWNTIGAA 320
Query: 110 A------PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARP-ITGQSTMGPR- 161
A P M SG Q + + P AS+ +R P TG + GP+
Sbjct: 321 AGFGVQSPYMVQSGGYGQ----AGRGGTRPAASSAAVAMRAQQGQYGPGQTGVTRGGPQA 376
Query: 162 -----GGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQI-----GGIQPAAAGVQ 211
GG +Q G S GRQT PG Q Q+ I VQ
Sbjct: 377 QRLTAGGAMVQNQGTRSQQMGGRQT---------QPGKPNQGQMMYSSYSAITGRPGQVQ 427
Query: 212 ----AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMY--PELAGKITGMLLEID 265
++ +QGQEPLT+ MLA A PQEQKQMLGER++PLI+R+Y P++ GKITGM+LE+D
Sbjct: 428 SQQNSIVIQGQEPLTAHMLAQALPQEQKQMLGERIYPLIERIYQGPDV-GKITGMMLEMD 486
Query: 266 NAELLYMLEHNESLKSKVEEAVAVL 290
N+ELL MLE+ E L+SKV EA +VL
Sbjct: 487 NSELLMMLENEELLQSKVSEAASVL 511
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQY-MQR 60
DG+SKGFGFV F +PE+A KAVTEM+ + + LYV AQ+K +R A L +Y Q+
Sbjct: 99 DGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQK 158
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+ M+ Q L+ L Q YG + +A M +
Sbjct: 159 VERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYG-----------KITSAKVMCDDNGRS 207
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
+GF + F A+ T + G M +P+
Sbjct: 208 KGFGFVC-FEKPDEATKAVTEMNGKMMCTKPL 238
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYV 40
E+ SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 4 DEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYV 42
>gi|334312764|ref|XP_003339775.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
1-like [Monodelphis domestica]
Length = 614
Score = 219 bits (559), Expect = 9e-55, Method: Compositional matrix adjust.
Identities = 152/309 (49%), Positives = 195/309 (63%), Gaps = 39/309 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L SQYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTSQYMQR 385
Query: 61 IANMRMQQMGQLF-QPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAA-APQMRP 115
++ +R G LF QP + YF+P +PQP FY P+ + +RP PRW + +P+
Sbjct: 386 LSTLRGLN-GPLFPQPTN---YFLPAIPQPPARATFYSPSTVAPVRPAPRWTSYSPRSSC 441
Query: 116 SGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVS 175
T +P + PR + +N+S + ST PR G MQ V+
Sbjct: 442 ESPTXLIVLLLP---ATPRRTV-------SNIST--VRQASTQVPRAGPHMQ-----RVA 484
Query: 176 AAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQ-------AVHVQGQEPLTSTMLAA 228
G QT G PG+ P + + ++A AVH+QGQEPLT++MLA+
Sbjct: 485 NIGTQTMGTG-----CPGS-PGRAVAQYKYSSAVRNTHQVMEPAVHIQGQEPLTASMLAS 538
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A QEQKQMLG+RL+PLI ++ +LAGKITGMLLEIDN+ELL +LE ESL SK+EEA+A
Sbjct: 539 APVQEQKQMLGDRLYPLIYGIHAQLAGKITGMLLEIDNSELLLLLESPESLHSKIEEAIA 598
Query: 289 VLQAHQAKQ 297
LQA + +
Sbjct: 599 ALQAQEVME 607
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ E+G+S+GFGFV F EEA KAV+ MNG+ +G + LYV AQ++ +R++ L ++ Q
Sbjct: 224 VDENGQSRGFGFVNFEKHEEAQKAVSNMNGKELGGRVLYVGRAQKRSERQSELKRRFEQ 282
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 38/59 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ ++ S+GFGFV F + E A +A+ MNG ++ + ++V + +++R+A L ++ ++
Sbjct: 131 VCDENGSRGFGFVHFETHEAANQAINTMNGMLLNDRKVFVGHFKSRQEREAELGARALE 189
>gi|170579093|ref|XP_001894673.1| polyadenylate-binding protein 1 [Brugia malayi]
gi|158598601|gb|EDP36463.1| polyadenylate-binding protein 1, putative [Brugia malayi]
Length = 655
Score = 218 bits (556), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 153/331 (46%), Positives = 197/331 (59%), Gaps = 51/331 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++GRSKGFGFVCF P+EATKAVTEMNG+++ +KPLYVALAQRKEDRKA LASQYMQR+
Sbjct: 338 DDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRL 397
Query: 62 ANMRMQQMGQL----FQPGSTGGYFVPTLPQPQRFYGPTQMT---QIR-PQPRW----AA 109
A++RM G + + PG TGG+FV + Q QR + PT Q+R PRW AA
Sbjct: 398 ASIRMHNAGSMPGTVYTPG-TGGFFVSSTLQNQRAFMPTATIPGAQMRGTTPRWNTIGAA 456
Query: 110 A------PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARP-ITGQSTMGPR- 161
A P M SG Q + + P AS+ +R P TG + GP+
Sbjct: 457 AGFGVQSPYMVQSGGYGQ----AGRGGTRPTASSAAVAMRAQQGQYGPGQTGVTRGGPQA 512
Query: 162 -----GGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQI-----GGIQPAAAGVQ 211
G +Q G S GRQT PG Q Q+ I VQ
Sbjct: 513 QRLTAGSAMVQNQGTRSQQMGGRQT---------QPGKPNQGQMMYSSYSAITGRPGQVQ 563
Query: 212 ----AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMY--PELAGKITGMLLEID 265
++ +QGQEPLT+ MLA A PQEQKQMLGER++PLI+R+Y P++ GKITGM+LE+D
Sbjct: 564 SQQNSIVIQGQEPLTAHMLAQALPQEQKQMLGERIYPLIERIYQGPDV-GKITGMMLEMD 622
Query: 266 NAELLYMLEHNESLKSKVEEAVAVLQAHQAK 296
N+ELL MLE+ E L+SKV EA +VL + +++
Sbjct: 623 NSELLMMLENEELLQSKVSEAASVLASSKSQ 653
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQY-MQR 60
DG+SKGFGFV F +PE+A KAVTEM+ + + LYV AQ+K +R A L +Y Q+
Sbjct: 235 DGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQK 294
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+ M+ Q L+ L Q YG + +A M +
Sbjct: 295 VERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYG-----------KITSAKVMCDDNGRS 343
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
+GF + F A+ T + G M +P+
Sbjct: 344 KGFGFVC-FEKPDEATKAVTEMNGKMMCTKPL 374
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYV 40
E+ SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 140 DEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYV 178
>gi|193615485|ref|XP_001945427.1| PREDICTED: polyadenylate-binding protein 1-like [Acyrthosiphon
pisum]
Length = 308
Score = 218 bits (555), Expect = 2e-54, Method: Compositional matrix adjust.
Identities = 132/253 (52%), Positives = 167/253 (66%), Gaps = 15/253 (5%)
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSG--QTA 120
NMRMQ +G ++Q G++ GYFVPT+ QPQ FYGPTQMTQIRPQPRWA+ PQ+R TA
Sbjct: 59 NMRMQSIGPIYQRGASSGYFVPTILQPQHFYGPTQMTQIRPQPRWASQPQVRAGTPQATA 118
Query: 121 QGFPNI-PQFRS----APRASTGQTVI-RGA--NMSARPITGQSTMGPRGGGPMQAPGPA 172
+PN+ Q+R+ AP + Q + R A + +A+PIT P G + A G
Sbjct: 119 ADYPNMATQYRNIGVRAPVPAGHQAALARNAMVDRNAKPITTAQQQMP---GDVAAGGVC 175
Query: 173 SVSAAGRQTGGYNKYPVRNPGTQPQA--QIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
A G G +RN Q Q Q+ QP A A+H GQEPLT T+LA A+
Sbjct: 176 IPIARGSGFGYKYTANMRNSPDQAQGMGQVQPDQPPAPVQAAIHAHGQEPLTETILATAK 235
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P++QKQ+LG+RLFPLIQ MYPEL+ KIT MLLEI+N++LL+MLEH ESLK K+EEAV VL
Sbjct: 236 PEDQKQILGQRLFPLIQGMYPELSDKITCMLLEINNSDLLHMLEHQESLKIKIEEAVTVL 295
Query: 291 QAHQAKQAAVKKE 303
QAHQA+Q +KKE
Sbjct: 296 QAHQAQQTQMKKE 308
>gi|312067233|ref|XP_003136646.1| hypothetical protein LOAG_01058 [Loa loa]
gi|307768188|gb|EFO27422.1| hypothetical protein LOAG_01058 [Loa loa]
Length = 655
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 152/325 (46%), Positives = 192/325 (59%), Gaps = 51/325 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++GRSKGFGFVCF P+EATKAVTEMNG+++ +KPLYVALAQRKEDRKA LASQYMQR+
Sbjct: 338 DDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRL 397
Query: 62 ANMRMQQMGQL----FQPGSTGGYFVPTLPQPQRFYGPTQMT---QIR-PQPRW----AA 109
A++RM G + + PG TGG+FV + Q QR + PT Q+R PRW AA
Sbjct: 398 ASIRMHNAGSMPGTVYTPG-TGGFFVSSTLQNQRAFMPTATIPGAQMRGTTPRWNTIGAA 456
Query: 110 A------PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPI-TGQSTMGPR- 161
A P M SG Q + + P AS+ +R P G + GP+
Sbjct: 457 AGFGVQSPYMVQSGAYGQ----GGRGGTRPTASSAAVAMRAQQGQYGPAQAGVTRGGPQA 512
Query: 162 -----GGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQI-----GGIQPAAAGVQ 211
GG +Q G S GRQ PG Q Q+ I VQ
Sbjct: 513 QRMAAGGAMVQNQGTRSQQMGGRQA---------QPGKPSQGQMMYSSYSAITGRPGQVQ 563
Query: 212 ----AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMY--PELAGKITGMLLEID 265
++ +QGQEPLT+ MLA A PQEQKQMLGER++PLI+R+Y P++ GKITGM+LE+D
Sbjct: 564 SQQNSIVIQGQEPLTAHMLAQALPQEQKQMLGERIYPLIERIYQGPDV-GKITGMMLEMD 622
Query: 266 NAELLYMLEHNESLKSKVEEAVAVL 290
N+ELL MLE+ E L+SKV EA +VL
Sbjct: 623 NSELLMMLENEELLQSKVSEAASVL 647
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQY-MQR 60
DG+SKGFGFV F +PE+A KAVTEM+ + + LYV AQ+K +R A L +Y Q+
Sbjct: 235 DGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQK 294
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+ M+ Q L+ L Q YG + +A M +
Sbjct: 295 VERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYG-----------KITSAKVMCDDNGRS 343
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
+GF + F A+ T + G M +P+
Sbjct: 344 KGFGFVC-FEKPDEATKAVTEMNGKMMCTKPL 374
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYV 40
E+ SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 140 DEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYV 178
>gi|156360993|ref|XP_001625306.1| predicted protein [Nematostella vectensis]
gi|156212133|gb|EDO33206.1| predicted protein [Nematostella vectensis]
Length = 584
Score = 217 bits (553), Expect = 4e-54, Method: Compositional matrix adjust.
Identities = 156/305 (51%), Positives = 187/305 (61%), Gaps = 67/305 (21%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G SKGFGFVCFSSPEEATKAVTEMNGRI+ SKPLYVALAQR+E+RKA LA+Q+M
Sbjct: 329 MKDDKGNSKGFGFVCFSSPEEATKAVTEMNGRILISKPLYVALAQRREERKAQLAAQHMH 388
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQ-----MR 114
RI+ +RM Q GQ +P +F P QM Q+RP RW PQ MR
Sbjct: 389 RISGLRMHQ-GQ--RP-----FFTP------------QMPQVRP--RWGMPPQQQQQQMR 426
Query: 115 PSG-QTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
P+G Q G +PQ P A M P+ Q+ MG G P + P S
Sbjct: 427 PTGVQNMGGQAGMPQ--GGP-----------AGMPRMPVQ-QARMG--GVPPQRQPYKFS 470
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQE 233
QT VRNP Q GG G+ GQEPL ++LAAA PQE
Sbjct: 471 ------QT-------VRNPPPAGQMPEGG-----QGIPG----GQEPLNPSVLAAATPQE 508
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQMLGERLFPLIQ +P++AGKITGMLLEIDNAELL+MLE ++L+ KV+EAV+VL+AH
Sbjct: 509 QKQMLGERLFPLIQTNHPDMAGKITGMLLEIDNAELLHMLESRDALQMKVDEAVSVLRAH 568
Query: 294 QAKQA 298
QAK++
Sbjct: 569 QAKES 573
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 40/57 (70%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+G+SKGFGFV F +PEEA +AV +NG+ IG + L+ A+++ +R A + ++ ++
Sbjct: 230 EGKSKGFGFVSFETPEEAEEAVNVLNGKEIGGRRLWAGRAKKRAERAAEVKAEIEKK 286
Score = 38.9 bits (89), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 18/70 (25%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G KG+GFV F + + A +A+ ++G ++ K ++V K++R + +Q ++
Sbjct: 135 DELGNPKGYGFVHFETEDAALEAIARVDGMLLNDKKVFVGRWMSKKERIEKMGTQP-KKF 193
Query: 62 ANMRMQQMGQ 71
N+ ++ G
Sbjct: 194 TNVYVKNFGD 203
>gi|295414050|gb|ADG08184.1| cytoplasmic poly(A) binding protein, partial [Schmidtea
mediterranea]
Length = 491
Score = 215 bits (547), Expect = 2e-53, Method: Compositional matrix adjust.
Identities = 160/357 (44%), Positives = 190/357 (53%), Gaps = 78/357 (21%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+ RSKGFGFVCFS+PEEATKAVTEMNG+I GSKPLYVALAQRKEDRKAHLASQYMQR+
Sbjct: 134 NNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRVNP 193
Query: 64 MRMQ-----QMGQLFQPGSTGG------YFVPTLPQPQRFYGPTQMTQIRP-QPRWAAAP 111
R + L G GG F P P R Y TQ P Q RW+
Sbjct: 194 HRNNYPNQVSVNTLISGGPPGGPSILPYAFAPNASTP-RVY--TQSAAFMPPQNRWSN-- 248
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANM--SARPITGQSTMGPRGGG----- 164
+M PS G N+ Q +A NM S+ PI +TMG +
Sbjct: 249 RMHPSQLQFNG-GNMRQLANA----------HFGNMEGSSVPIQN-NTMGMQANQIRQVS 296
Query: 165 --PMQAP---GPASVSAAGRQTGGY---------NKYPV----------------RNPGT 194
P Q P A+VSA+ G N P+ + P
Sbjct: 297 MIPNQRPMLSNNANVSASNVMMNGVANTVKSAPQNSRPITGVQMPITSQASNISQQRPPN 356
Query: 195 QPQAQIGGIQPAAAGVQAVH----------VQGQ-EPLTSTMLAAAQPQEQKQMLGERLF 243
QP QI G Q +G Q V+ V G EPLT + LA+A EQKQMLGERL+
Sbjct: 357 QPTRQITG-QSVISGNQNVNRPINNGSNQLVSGNLEPLTISTLASAPIAEQKQMLGERLY 415
Query: 244 PLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAV 300
PL+ RMYPELAGKITGMLLEIDN ELL+MLE +SL +K+EEA+ VLQ+H+ + V
Sbjct: 416 PLVHRMYPELAGKITGMLLEIDNTELLHMLESEDSLTTKIEEAMNVLQSHKNQNVIV 472
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 36/57 (63%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ E+G+SKGFGFVCF E A AV +NG++ + LYV AQ+K +R L S +
Sbjct: 27 IDENGKSKGFGFVCFKDSETAESAVKALNGKMFKDRQLYVGRAQKKNERLDELRSHF 83
>gi|355784464|gb|EHH65315.1| Polyadenylate-binding protein 1-like protein [Macaca fascicularis]
Length = 635
Score = 211 bits (538), Expect = 3e-52, Method: Compositional matrix adjust.
Identities = 143/297 (48%), Positives = 175/297 (58%), Gaps = 55/297 (18%)
Query: 19 EEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRMQQ---MGQLFQP 75
EEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR++ MR +G QP
Sbjct: 365 EEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSFQQP 424
Query: 76 GSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGFPNIPQFRSA 132
S YF+P +PQP +YG +T +P PRW + P RPS + P +P+ A
Sbjct: 425 SS---YFLPAVPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-RPSCASMVRPPVMPRRPPA 480
Query: 133 PRASTGQTVI----------RGANMSARPITGQSTMGPRGGGPMQAPG----PASVSAAG 178
+S Q R AN+ G T GP GG PG P S+A
Sbjct: 481 HISSVRQASTQVPRMVPHTQRVANI------GTQTTGP-GGVGCCTPGRPLLPYKCSSAA 533
Query: 179 RQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQML 238
T Y V+ P AVH+ GQEPLT++MLAAA EQKQM+
Sbjct: 534 HST-----YRVQEP-------------------AVHIPGQEPLTASMLAAAPLHEQKQMI 569
Query: 239 GERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295
GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL +K++EAVAVLQAHQA
Sbjct: 570 GERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQAHQA 626
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 237 DNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 294
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 42/69 (60%), Gaps = 1/69 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ ++
Sbjct: 143 VCDEHGSRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE- 201
Query: 61 IANMRMQQM 69
N+ ++ +
Sbjct: 202 FTNIYVKNL 210
>gi|47933430|gb|AAT39343.1| polyadenylate binding protein [Oikopleura dioica]
Length = 610
Score = 210 bits (535), Expect = 5e-52, Method: Compositional matrix adjust.
Identities = 144/303 (47%), Positives = 169/303 (55%), Gaps = 70/303 (23%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+S+ GRSKGFGFVCFSSPEEATKAVTEMNGRI G KPLYV LAQRKEDRKAHL QYMQR
Sbjct: 364 VSKKGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQYMQR 423
Query: 61 IAN-MRMQQ------MGQLFQPGSTGGYFVPTLP-QPQRFYGPTQMTQIRPQPRWAAAPQ 112
++ +RMQ + Q FQP Y +PT+ QP + + P +R PRW AP
Sbjct: 424 VSTGIRMQAFMGNQVVNQNFQPPR---YILPTMQGQPVQMF-PQGTPMVRATPRW--AP- 476
Query: 113 MRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPA 172
PN Q R S Q ++ + R + Q P
Sbjct: 477 -----------PN--QVRHIVYQSHSQQILASPDARVRNV--------------QIPSEV 509
Query: 173 SVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQ 232
++ P P QPA Q E LTS+MLA A PQ
Sbjct: 510 ----------------IQMPPQMPHQN----QPAGD-------QAPETLTSSMLANANPQ 542
Query: 233 EQKQMLGERLFPLIQRMY-PELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
EQKQMLGERLFPLIQ M +LAGKITGMLLEIDN+ELL+ML++ E LKSKV+EAV VL+
Sbjct: 543 EQKQMLGERLFPLIQSMAATDLAGKITGMLLEIDNSELLHMLDNRELLKSKVDEAVLVLK 602
Query: 292 AHQ 294
HQ
Sbjct: 603 HHQ 605
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
SKGFGFV + S E A +A+ ++NG ++ K ++VA + + DR
Sbjct: 128 SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDR 170
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G SK GF+ F ++A AV M+ + I K LY AQ+K +R + L ++Y ++I
Sbjct: 220 GLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKY-EKIKQE 278
Query: 65 RMQQ 68
R+Q+
Sbjct: 279 RIQR 282
>gi|341900148|gb|EGT56083.1| hypothetical protein CAEBREN_04295 [Caenorhabditis brenneri]
Length = 649
Score = 206 bits (525), Expect = 8e-51, Method: Compositional matrix adjust.
Identities = 143/308 (46%), Positives = 179/308 (58%), Gaps = 26/308 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF PEEAT AVTEMN +++ SKPLYVALAQRKEDR+A LASQYMQR+
Sbjct: 351 DENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRL 410
Query: 62 ANMRMQQM---GQLF--QPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPS 116
A+MRM G L+ QP GY+V Q QR +G QM +RP RW Q
Sbjct: 411 ASMRMHTNVPGGGLYPQQPQPGPGYYVANPMQQQRNFGGPQM--VRPGGRWGPQNQYPVQ 468
Query: 117 GQ--TAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAP----- 169
Q AQG P + Q R R Q RG + Q + +GG MQ P
Sbjct: 469 NQYMMAQG-PGVYQNRMG-RPQNQQGGPRGPSQ-------QYSQVAQGGIRMQGPPRPQN 519
Query: 170 -GPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
G + + GT+ Q Q Q + + GQEPLTS MLAA
Sbjct: 520 AGVQQPNVQRPPPQQPQQQRPAPTGTKAQPQAYQQPYQQQRPQGIVIGGQEPLTSAMLAA 579
Query: 229 AQPQEQKQMLGERLFPLIQRMYP--ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
A PQEQKQ+LGER++ LI+++YP + AGKITGM+LEIDN+EL+ ML+ +E +SKV+EA
Sbjct: 580 AAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEA 639
Query: 287 VAVLQAHQ 294
+VL + Q
Sbjct: 640 ASVLASSQ 647
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 23/82 (28%), Positives = 42/82 (51%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E+G SKG+GFV F + E A A+ ++NG ++ K ++V Q + R L + ++
Sbjct: 153 IDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELG-ETAKK 211
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G + S F
Sbjct: 212 YTNVYVKNFGDHYNKESLEKLF 233
Score = 37.4 bits (85), Expect = 8.4, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGR-IIGSK-PLYVALAQRKEDRKAHLASQYM 58
M+ DG+SKGFGFV F+ PEEA AV +N + GS L+V AQ+K +R A L ++
Sbjct: 245 MTSDGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHE 304
Query: 59 QRIANMRMQQ 68
Q RMQ+
Sbjct: 305 QHKVE-RMQK 313
>gi|341883809|gb|EGT39744.1| hypothetical protein CAEBREN_05859 [Caenorhabditis brenneri]
Length = 467
Score = 206 bits (524), Expect = 1e-50, Method: Compositional matrix adjust.
Identities = 143/308 (46%), Positives = 179/308 (58%), Gaps = 26/308 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF PEEAT AVTEMN +++ SKPLYVALAQRKEDR+A LASQYMQR+
Sbjct: 169 DENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRL 228
Query: 62 ANMRMQQM---GQLF--QPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPS 116
A+MRM G L+ QP GY+V Q QR +G QM +RP RW Q
Sbjct: 229 ASMRMHTNVPGGGLYPQQPQPGPGYYVANPMQQQRNFGGPQM--VRPGGRWGPQNQYPVQ 286
Query: 117 GQ--TAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAP----- 169
Q AQG P + Q R R Q RG + Q + +GG MQ P
Sbjct: 287 NQYMMAQG-PGVYQNRMG-RPQNQQGGPRGPSQ-------QYSQVAQGGIRMQGPPRPQN 337
Query: 170 -GPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
G + + GT+ Q Q Q + + GQEPLTS MLAA
Sbjct: 338 AGVQQPNVQRPPPQQPQQQRPAPTGTKAQPQAYQQPYQQQRPQGIVIGGQEPLTSAMLAA 397
Query: 229 AQPQEQKQMLGERLFPLIQRMYP--ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
A PQEQKQ+LGER++ LI+++YP + AGKITGM+LEIDN+EL+ ML+ +E +SKV+EA
Sbjct: 398 AAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEA 457
Query: 287 VAVLQAHQ 294
+VL + Q
Sbjct: 458 ASVLASSQ 465
Score = 37.7 bits (86), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGR-IIGSK-PLYVALAQRKEDRKAHLASQYM 58
M+ DG+SKGFGFV F+ PEEA AV +N + GS L+V AQ+K +R A L ++
Sbjct: 63 MTSDGKSKGFGFVAFAEPEEAEAAVQALNDSPVEGSDLKLHVCRAQKKSERHAELKKKHE 122
Query: 59 QRIANMRMQQ 68
Q RMQ+
Sbjct: 123 QHKVE-RMQK 131
>gi|332208761|ref|XP_003253477.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 590
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 142/294 (48%), Positives = 173/294 (58%), Gaps = 43/294 (14%)
Query: 16 SSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRMQQ---MGQL 72
S P A AVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR++ MR +G
Sbjct: 317 SFPTPAALAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTMRTLSNPLLGSF 376
Query: 73 FQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGFPNIPQF 129
QP S YF+P +PQP +YG +T +P PRW + P RPS + P +P+
Sbjct: 377 QQPSS---YFLPAVPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-RPSCASMVRPPVVPRR 432
Query: 130 RSAPRASTGQT---VIRGANMSARPIT-GQSTMGPRGGGPMQAPG----PASVSAAGRQT 181
AP +S Q V R + R G T GP GG PG P S A T
Sbjct: 433 PLAPISSVRQASTQVPRTVPHTQRVANIGTQTTGP-GGVGCCTPGRPLLPYKCSPAAHST 491
Query: 182 GGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGER 241
Y V+ P AVH+ GQEPLT++MLAAA EQKQM+GER
Sbjct: 492 -----YRVQEP-------------------AVHIPGQEPLTASMLAAAPLHEQKQMIGER 527
Query: 242 LFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295
L+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL +K++EAVAVLQAHQA
Sbjct: 528 LYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQAHQA 581
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRMERQNELKRRFEQ 282
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ ++
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
>gi|313232178|emb|CBY09289.1| unnamed protein product [Oikopleura dioica]
Length = 611
Score = 205 bits (521), Expect = 2e-50, Method: Compositional matrix adjust.
Identities = 139/309 (44%), Positives = 179/309 (57%), Gaps = 35/309 (11%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E RSKGFGFVCF+S EEATKAVTEMNGRII SKPLYVALAQRK++RKAHL QYMQR+
Sbjct: 318 EGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVALAQRKDERKAHLQQQYMQRVT 377
Query: 63 N-MRMQ-------QMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMR 114
MR+Q Q G L+ P P + Q P +M+ IRP PRW+ +
Sbjct: 378 TGMRLQAFPTNQPQYGNLYMP--------PPIQQ-----HPFRMS-IRPTPRWSQVKYDQ 423
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITG--QSTMGPRGGGPM-QAPGP 171
Q P + R + R + + + +G ++ G RG P+ + P
Sbjct: 424 LQSQINSEHPALRLRRESSRTFFIFSFVTSSECRMIFNSGGPRAQNGVRGIAPITRFPAN 483
Query: 172 ASVSAAGRQTGGYNKYP--VRNPGTQP-QAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
+ AG + Y VRNP P +AQI PA Q ++PL +T+LAA
Sbjct: 484 NYTARAGSRPNQSIIYKPGVRNPLPTPAEAQI----PAEQAAQPKAPDTEQPLNATILAA 539
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES---LKSKVEE 285
A PQEQKQ+LGERL+P I+++YPEL GKITGMLLEI+N+ELL ML+ + L+ KV+E
Sbjct: 540 APPQEQKQLLGERLYPSIRQLYPELCGKITGMLLEIENSELLAMLDTKSNPGLLQEKVQE 599
Query: 286 AVAVLQAHQ 294
AV VL H+
Sbjct: 600 AVTVLTQHR 608
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G+S+ FGFV F + E A K V +++ + K ++V AQ+K +R+A L ++ +++
Sbjct: 211 DENGKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKF-EKL 269
Query: 62 ANMRMQQ 68
+ R Q+
Sbjct: 270 KHERNQR 276
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
G SKG+GFV F + E A KA+ +++G ++ K ++V + + +R
Sbjct: 121 GESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGER 165
>gi|165940926|gb|ABY75308.1| cytoplasmic 1 polyA binding protein [Ovis aries]
Length = 305
Score = 203 bits (516), Expect = 8e-50, Method: Compositional matrix adjust.
Identities = 132/266 (49%), Positives = 165/266 (62%), Gaps = 31/266 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 55 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 114
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 115 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 168
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPI--TGQSTMGPRGGGP 165
G F N+P R +APR + +R A+ MS + + T TMGPR
Sbjct: 169 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 226
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QP AVHVQGQEPLT++M
Sbjct: 227 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QP------AVHVQGQEPLTASM 278
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYP 251
LA+A PQEQKQMLGERLFPLIQ M+P
Sbjct: 279 LASAPPQEQKQMLGERLFPLIQAMHP 304
>gi|363894957|gb|AEW42987.1| putative polyadenylate-binding protein 1, partial [Haliotis
diversicolor]
Length = 563
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 141/248 (56%), Positives = 161/248 (64%), Gaps = 30/248 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MSE GRSKGFGFVCFSSPEEATKAVTEMNGRII SKPLYVALAQRKEDR+AHLASQYMQR
Sbjct: 327 MSEGGRSKGFGFVCFSSPEEATKAVTEMNGRIIVSKPLYVALAQRKEDRRAHLASQYMQR 386
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQPQR-FYGPTQMTQIRPQPRWAAAPQMRPS 116
+ MR Q Q Q+FQP + GYFVPT+PQ QR F+ PTQM Q+R PRW Q+RP+
Sbjct: 387 MTTMRQQQTAQFNQMFQP-TGAGYFVPTMPQAQRGFFAPTQMPQVRASPRWQT--QVRPT 443
Query: 117 GQTA--QGFPNIPQFR-SAPRASTGQTVIRGANMSARPITGQS------------TMGPR 161
TA QG P Q R +APRA GQ +R A ++ARPITGQS MGP
Sbjct: 444 QPTAGFQGMPASGQMRTTAPRA--GQPAVR-AGVNARPITGQSGAVPTNPNARMAAMGPG 500
Query: 162 GGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPL 221
G A PA SA RQ +N +RNP T + Q Q+V + GQEPL
Sbjct: 501 MGNRPTAAAPAMPSAPNRQGFKFNT-QMRNPPT----AVPQSQVMQQPQQSVVIPGQEPL 555
Query: 222 TSTMLAAA 229
T++MLAAA
Sbjct: 556 TASMLAAA 563
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 5/65 (7%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNG-RIIGSKPLYVALAQRKEDRKAHLASQY--- 57
E G+S+GFGFV + PE A KAV +NG + G K LY AQ+K +R+A L ++
Sbjct: 225 DEIGKSRGFGFVSYEEPEAAEKAVDNLNGMELGGGKVLYAGRAQKKAERQAELKDKFEKI 284
Query: 58 -MQRI 61
M+RI
Sbjct: 285 KMERI 289
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 44/83 (53%), Gaps = 1/83 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
S++ SKG+GFV F + E A +A+ ++NG ++ K +YV +++R A L + M+R
Sbjct: 132 SDENGSKGYGFVHFETEEAARQAIEKVNGMLLNGKKVYVGKFIPRKERIALLGDK-MKRF 190
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP 84
N+ ++ G F P
Sbjct: 191 NNVYIKNFGDELDDDKIRELFDP 213
>gi|313229163|emb|CBY23748.1| unnamed protein product [Oikopleura dioica]
Length = 570
Score = 202 bits (515), Expect = 1e-49, Method: Compositional matrix adjust.
Identities = 141/295 (47%), Positives = 165/295 (55%), Gaps = 55/295 (18%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+GRSKGFGFVCFSSPEEATKAVTEMNGRI G KPLYV LAQRKEDRKAHL QYMQR++
Sbjct: 322 NGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQYMQRVST 381
Query: 64 -MRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQG 122
+RMQ G V QP R+ PT GQ Q
Sbjct: 382 GIRMQAF--------MGNQVVNQNFQPPRYILPTM------------------QGQPVQM 415
Query: 123 FPN-IPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ-APGPASVSAAGRQ 180
FP P R+ PR + ++ M + G+ M +GG + P +V
Sbjct: 416 FPQGTPMVRATPRWAPPNQRVQMPGM----VRGR--MAQQGGPQFRLTPSVRNVQIPSE- 468
Query: 181 TGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGE 240
++ P P QPA Q E LTS+MLA A PQEQKQMLGE
Sbjct: 469 -------VIQMPPQMPHQN----QPAGD-------QAPETLTSSMLANANPQEQKQMLGE 510
Query: 241 RLFPLIQRMY-PELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
RLFPLIQ M +LAGKITGMLLEIDN+ELL+ML++ E LKSKV+EAV VL+ HQ
Sbjct: 511 RLFPLIQSMAATDLAGKITGMLLEIDNSELLHMLDNRELLKSKVDEAVLVLKHHQ 565
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
SKGFGFV + S E A +A+ ++NG ++ K ++VA + + DR
Sbjct: 128 SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDR 170
Score = 41.6 bits (96), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G SK GF+ F ++A AV M+ + I K LY AQ+K +R + L ++Y ++I
Sbjct: 220 GLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKY-EKIKQE 278
Query: 65 RMQQ 68
R+Q+
Sbjct: 279 RIQR 282
>gi|91094515|ref|XP_971941.1| PREDICTED: similar to poly A binding protein [Tribolium castaneum]
gi|270000753|gb|EEZ97200.1| hypothetical protein TcasGA2_TC004389 [Tribolium castaneum]
Length = 565
Score = 202 bits (514), Expect = 2e-49, Method: Compositional matrix adjust.
Identities = 128/295 (43%), Positives = 167/295 (56%), Gaps = 65/295 (22%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E GRSKGFGFVCFS+PEEA+KA+TEM+GR+IGSKP+YVALAQR EDR+A+L++Q MQR
Sbjct: 328 MTEGGRSKGFGFVCFSTPEEASKAITEMDGRMIGSKPIYVALAQRYEDRRAYLSAQCMQR 387
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAA-APQMRPSGQT 119
I R Q M P +T + +PTLP RFY M QIRP PRW A P++
Sbjct: 388 I---RHQTMS---PPLTTPQFLIPTLP---RFYN--HMAQIRPTPRWTAQVPRL------ 430
Query: 120 AQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGR 179
G N+P + P ST + ++ N SARPITGQ P+ P ++A
Sbjct: 431 -NGTYNMPLLPATPYRSTSRPQVQ-INRSARPITGQQV-------PIARPNSKYTASAPP 481
Query: 180 QTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLG 239
+ +PG + K+MLG
Sbjct: 482 RGVSVGVGNGGDPGA--------------------------------------DDKRMLG 503
Query: 240 ERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
ER++ +I++ YPE+AGKITGMLLEID +EL ++ + SLK+KVEEAVAVLQAH
Sbjct: 504 ERMYRVIEKTYPEIAGKITGMLLEIDISELKALVNNEGSLKAKVEEAVAVLQAHN 558
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 34/80 (42%), Positives = 42/80 (52%), Gaps = 9/80 (11%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ---- 59
DG SKGFGF+ F PE A KAVTEMN + LYV AQ+K +R L Y Q
Sbjct: 229 DGTSKGFGFIAFEEPESAEKAVTEMNNYELNGTNLYVGRAQKKSERIKELKKCYEQMKLE 288
Query: 60 ---RI--ANMRMQQMGQLFQ 74
RI AN+ ++ + F
Sbjct: 289 RYNRIQGANVYIKNLDDTFD 308
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 47/82 (57%), Gaps = 8/82 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA----LAQRKE---DRKAHL 53
+ +DG SKG+GFV F S E A KA+ ++NG ++ K +YV A+R++ ++
Sbjct: 133 IDDDGVSKGYGFVHFESIEAANKAIEKVNGMLLNGKKVYVGKFIPRAEREKEIGEKSKKY 192
Query: 54 ASQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ N+ +Q+ LF+
Sbjct: 193 TNVYVKNFGRNLTQEQLYDLFK 214
>gi|71993209|ref|NP_001021710.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
gi|38422742|emb|CAE54916.1| Protein PAB-1, isoform b [Caenorhabditis elegans]
Length = 583
Score = 201 bits (510), Expect = 5e-49, Method: Compositional matrix adjust.
Identities = 141/302 (46%), Positives = 177/302 (58%), Gaps = 17/302 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF PEEAT AVTEMN +++ SKPLYVA+AQRKEDR+A LASQYMQR+
Sbjct: 288 DENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 347
Query: 62 ANMRMQQM---GQLFQPGSTG-GYFVPTLPQPQR-FYGPTQMTQIRPQPRWAAAPQMRPS 116
A+MRM ++ P G GY+V Q QR F G QM +RP RW Q
Sbjct: 348 ASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQM--VRPGGRWGMQNQYPVQ 405
Query: 117 GQ--TAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
Q AQG P + Q R R Q RG + + G R GP + P V
Sbjct: 406 NQYMMAQG-PGVYQNRMG-RPQNQQGGPRGPPQQYNQV---AQGGVRMQGPPRTQNPG-V 459
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
+ R T P+A Q Q + + GQEPLTS MLAAA PQEQ
Sbjct: 460 QQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQ 519
Query: 235 KQMLGERLFPLIQRMYP--ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
KQ+LGER++ LI+++YP + AGKITGM+LEIDN+EL+ ML+ +E +SKV+EA +VL +
Sbjct: 520 KQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVS 579
Query: 293 HQ 294
Q
Sbjct: 580 AQ 581
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQYM 58
M+ +G+SKGFGFV F++PEEA AV ++ I L+V AQ+K +R A L ++
Sbjct: 182 MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHE 241
Query: 59 QRIANMRMQQ 68
Q A RMQ+
Sbjct: 242 QHKAE-RMQK 250
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ EDG SKG+GFV F + E A A+ ++NG ++ K ++V Q + R L + ++
Sbjct: 90 IDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELG-ETAKQ 148
Query: 61 IANMRMQQMGQLF 73
N+ ++ G +
Sbjct: 149 FTNVYVKNFGDHY 161
>gi|71993203|ref|NP_001021709.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
gi|3880681|emb|CAA21572.1| Protein PAB-1, isoform a [Caenorhabditis elegans]
Length = 646
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 141/302 (46%), Positives = 177/302 (58%), Gaps = 17/302 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF PEEAT AVTEMN +++ SKPLYVA+AQRKEDR+A LASQYMQR+
Sbjct: 351 DENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 410
Query: 62 ANMRMQQM---GQLFQPGSTG-GYFVPTLPQPQR-FYGPTQMTQIRPQPRWAAAPQMRPS 116
A+MRM ++ P G GY+V Q QR F G QM +RP RW Q
Sbjct: 411 ASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQM--VRPGGRWGMQNQYPVQ 468
Query: 117 GQ--TAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
Q AQG P + Q R R Q RG + + G R GP + P V
Sbjct: 469 NQYMMAQG-PGVYQNRMG-RPQNQQGGPRGPPQQYNQV---AQGGVRMQGPPRTQNPG-V 522
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
+ R T P+A Q Q + + GQEPLTS MLAAA PQEQ
Sbjct: 523 QQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQ 582
Query: 235 KQMLGERLFPLIQRMYP--ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
KQ+LGER++ LI+++YP + AGKITGM+LEIDN+EL+ ML+ +E +SKV+EA +VL +
Sbjct: 583 KQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVS 642
Query: 293 HQ 294
Q
Sbjct: 643 AQ 644
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQYM 58
M+ +G+SKGFGFV F++PEEA AV ++ I L+V AQ+K +R A L ++
Sbjct: 245 MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHE 304
Query: 59 QRIANMRMQQ 68
Q A RMQ+
Sbjct: 305 QHKAE-RMQK 313
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ EDG SKG+GFV F + E A A+ ++NG ++ K ++V Q + R L + ++
Sbjct: 153 IDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELG-ETAKQ 211
Query: 61 IANMRMQQMGQLF 73
N+ ++ G +
Sbjct: 212 FTNVYVKNFGDHY 224
>gi|71993217|ref|NP_001021711.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
gi|38422743|emb|CAE54917.1| Protein PAB-1, isoform c [Caenorhabditis elegans]
Length = 586
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 141/302 (46%), Positives = 177/302 (58%), Gaps = 17/302 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF PEEAT AVTEMN +++ SKPLYVA+AQRKEDR+A LASQYMQR+
Sbjct: 291 DENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRL 350
Query: 62 ANMRMQQM---GQLFQPGSTG-GYFVPTLPQPQR-FYGPTQMTQIRPQPRWAAAPQMRPS 116
A+MRM ++ P G GY+V Q QR F G QM +RP RW Q
Sbjct: 351 ASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQM--VRPGGRWGMQNQYPVQ 408
Query: 117 GQ--TAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
Q AQG P + Q R R Q RG + + G R GP + P V
Sbjct: 409 NQYMMAQG-PGVYQNRMG-RPQNQQGGPRGPPQQYNQV---AQGGVRMQGPPRTQNPG-V 462
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
+ R T P+A Q Q + + GQEPLTS MLAAA PQEQ
Sbjct: 463 QQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQ 522
Query: 235 KQMLGERLFPLIQRMYP--ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
KQ+LGER++ LI+++YP + AGKITGM+LEIDN+EL+ ML+ +E +SKV+EA +VL +
Sbjct: 523 KQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVS 582
Query: 293 HQ 294
Q
Sbjct: 583 AQ 584
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQYM 58
M+ +G+SKGFGFV F++PEEA AV ++ I L+V AQ+K +R A L ++
Sbjct: 185 MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHE 244
Query: 59 QRIANMRMQQ 68
Q A RMQ+
Sbjct: 245 QHKAE-RMQK 253
>gi|313218343|emb|CBY41581.1| unnamed protein product [Oikopleura dioica]
Length = 613
Score = 200 bits (509), Expect = 6e-49, Method: Compositional matrix adjust.
Identities = 139/313 (44%), Positives = 176/313 (56%), Gaps = 56/313 (17%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E RSKGFGFVCF+S EEATKAVTEMNGRII SKPLYVALAQRK++RKAHL QYMQR+
Sbjct: 333 EGTRSKGFGFVCFTSAEEATKAVTEMNGRIIASKPLYVALAQRKDERKAHLQQQYMQRVT 392
Query: 63 N-MRMQ-------QMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMR 114
MR+Q Q G L+ P P + Q P +M+ IRP PRW+
Sbjct: 393 TGMRLQAFPTNQPQYGNLYMP--------PPIQQ-----HPFRMS-IRPTPRWSQVK--- 435
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
+ + + RS R +I+ + + GQ GPR ++ P +
Sbjct: 436 --------YDQLVKLRSKIRF-----LIKPSQYGPM-VRGQMPGGPRAQNGVRGIAPITR 481
Query: 175 SAAGRQTGGYNKYP---------VRNPGTQP-QAQIGGIQPAAAGVQAVHVQGQEPLTST 224
A T P VRNP P +AQI PA Q ++PL +T
Sbjct: 482 FPANNYTARAGSRPNQSIIYKPGVRNPLPTPAEAQI----PAEQAAQPKAPDTEQPLNAT 537
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES---LKS 281
+LAAA PQEQKQ+LGERL+P I+++YPEL GKITGMLLEI+N+ELL ML+ + L+
Sbjct: 538 ILAAAPPQEQKQLLGERLYPSIRQLYPELCGKITGMLLEIENSELLAMLDTKSNPGLLQE 597
Query: 282 KVEEAVAVLQAHQ 294
KV+EAV VL H+
Sbjct: 598 KVQEAVTVLTQHR 610
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 42/67 (62%), Gaps = 1/67 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G+S+ FGFV F + E A K V +++ + K ++V AQ+K +R+A L ++ +++
Sbjct: 226 DENGKSRQFGFVSFETHECAEKVVEKLHDKEFEGKKIFVGRAQKKAERQAELKVKF-EKL 284
Query: 62 ANMRMQQ 68
+ R Q+
Sbjct: 285 KHERNQR 291
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 29/45 (64%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
G SKG+GFV F + E A KA+ +++G ++ K ++V + + +R
Sbjct: 136 GESKGYGFVHFETEEAAVKAIEKLDGMLMNDKKVFVGRFKSRGER 180
>gi|341884731|gb|EGT40666.1| CBN-PAB-2 protein [Caenorhabditis brenneri]
Length = 707
Score = 199 bits (507), Expect = 9e-49, Method: Compositional matrix adjust.
Identities = 144/343 (41%), Positives = 173/343 (50%), Gaps = 84/343 (24%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E+GRSKGFGFVCF PEEAT AVTEMN ++IG+KPLYVALAQRKEDR+A LASQYMQR
Sbjct: 381 VDENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQR 440
Query: 61 IANMRMQQ--------MGQLFQPGSTGGYFVPT----------LPQPQRFYGPTQMTQIR 102
+A +RM Q M Q++QPG GY+VP PQ GP
Sbjct: 441 LATLRMGQQAAGGVPGMTQIYQPGQQ-GYYVPNPMAAPGRPAFQPQAAPMRGPPGQRMFN 499
Query: 103 PQPRWAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRG 162
Q P Q QGFP Q R R G+ Q M PR
Sbjct: 500 NQ-----VFMQYPFNQQRQGFPQ--QGRPPMRTQDGRQ--------------QYGMAPRP 538
Query: 163 GGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGG-------------------- 202
GP + GP G Q GG P+R G P+ G
Sbjct: 539 NGPPRVGGP------GAQMGG---APIRQQGGAPRGATHGAPQQKPYYQGPPRQHHPVQQ 589
Query: 203 -------------IQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRM 249
Q G + + GQE LTS MLA A PQEQKQ+LGER++ LI++M
Sbjct: 590 HSQHAPQQQQQQQQQQQQPGNSGIVIHGQETLTSHMLAQAAPQEQKQLLGERIYALIEKM 649
Query: 250 YP--ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
+P + AGKITGM+LEIDNAEL+ ML+ + +SKVEEA VL
Sbjct: 650 FPNHKDAGKITGMMLEIDNAELIMMLQDADLFRSKVEEAFTVL 692
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%), Gaps = 2/56 (3%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII-GSK-PLYVALAQRKEDRKAHLASQY 57
+G+ KGFGFV ++ PE A+KAV ++N I+ G++ L V AQ+K +R A L +Y
Sbjct: 279 EGKPKGFGFVAYADPEAASKAVDDLNESILEGTELKLSVCRAQKKSERSAELKRKY 334
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+DG SKG+GFV F + A A+ ++NG ++ K ++V Q + R L + +
Sbjct: 184 DDDGNSKGYGFVHFETEASAQTAIEKVNGMLLSDKKVFVGKFQPRAQRMKELGESGL-KY 242
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 243 TNVFVKNFGE 252
>gi|780291|gb|AAA65224.1| polyadenylate-binding protein [Caenorhabditis elegans]
Length = 646
Score = 199 bits (506), Expect = 1e-48, Method: Compositional matrix adjust.
Identities = 140/302 (46%), Positives = 176/302 (58%), Gaps = 17/302 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF PEEAT AVTEMN +++ SKPLYVA+ QRKEDR+A LASQYMQR+
Sbjct: 351 DENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIGQRKEDRRAQLASQYMQRV 410
Query: 62 ANMRMQQM---GQLFQPGSTG-GYFVPTLPQPQR-FYGPTQMTQIRPQPRWAAAPQMRPS 116
A+MRM ++ P G GY+V Q QR F G QM +RP RW Q
Sbjct: 411 ASMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQM--VRPGGRWGMQNQYPVQ 468
Query: 117 GQ--TAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
Q AQG P + Q R R Q RG + + G R GP + P V
Sbjct: 469 NQYMMAQG-PGVYQNRMG-RPQNQQGGPRGPPQQYNQV---AQGGVRMQGPPRTQNPG-V 522
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
+ R T P+A Q Q + + GQEPLTS MLAAA PQEQ
Sbjct: 523 QQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAYQQRPQGIVIGGQEPLTSAMLAAAAPQEQ 582
Query: 235 KQMLGERLFPLIQRMYP--ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
KQ+LGER++ LI+++YP + AGKITGM+LEIDN+EL+ ML+ +E +SKV+EA +VL +
Sbjct: 583 KQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLVS 642
Query: 293 HQ 294
Q
Sbjct: 643 AQ 644
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQYM 58
M+ +G+SKGFGFV F++PEEA AV ++ I L+V AQ+K +R A L ++
Sbjct: 245 MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHE 304
Query: 59 QRIANMRMQQ 68
Q A RMQ+
Sbjct: 305 QHKAE-RMQK 313
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/73 (30%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ EDG SKG+GFV F + E A A+ ++NG ++ K ++V Q + R L + ++
Sbjct: 153 IDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELG-ETAKQ 211
Query: 61 IANMRMQQMGQLF 73
N+ ++ G +
Sbjct: 212 FTNVYVKNFGDHY 224
>gi|165875543|gb|ABY68599.1| poly(A) binding protein cytoplasmic 1 [Ovis aries]
Length = 289
Score = 199 bits (505), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 130/262 (49%), Positives = 162/262 (61%), Gaps = 31/262 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 43 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 102
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 103 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 156
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPI--TGQSTMGPRGGGP 165
G F N+P R +APR + +R A+ MS + + T TMGPR
Sbjct: 157 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 214
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QP AVHVQGQEPLT++M
Sbjct: 215 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QP------AVHVQGQEPLTASM 266
Query: 226 LAAAQPQEQKQMLGERLFPLIQ 247
LA+A PQEQKQMLGERLFPLIQ
Sbjct: 267 LASAPPQEQKQMLGERLFPLIQ 288
>gi|440899695|gb|ELR50961.1| Polyadenylate-binding protein 1-like protein, partial [Bos
grunniens mutus]
Length = 618
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 137/314 (43%), Positives = 169/314 (53%), Gaps = 52/314 (16%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALA E RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALA---EGRKAILTNQYMQR 382
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSG 117
++ MR +G QP S YF+P +P Q+T P R Q P
Sbjct: 383 LSTMRALGGPILGSFQQPAS---YFLPAVP---------QVTACPPPFRDGQGEQADPRF 430
Query: 118 QTAQGFPNIPQFRSAPRASTGQTVIRGANM--SARPITGQSTMGPRGGGPMQAPGPASVS 175
+GFP ++ + + ++G + + P G+ P P P +
Sbjct: 431 AGREGFPGCFCWKLTQQVAVVTPSLKGVIVCPTVLPDLGEILC------PSDFPPPLNFL 484
Query: 176 AAGRQT--------GGYNKYPVRNP---------GTQPQAQIGGIQPAAAGVQAVHVQ-- 216
R T GG V P G P+A G PA+ V + HVQ
Sbjct: 485 HVPRATSRLPTRGLGGPASSHVSAPLDPRWKLQAGLHPRATPGAPHPASGDVSSCHVQVQ 544
Query: 217 -------GQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAEL 269
GQEPLT++MLAAA EQKQM+GERLFPL+ ++ LAGKITGMLLEIDN+EL
Sbjct: 545 EPAVHVPGQEPLTASMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSEL 604
Query: 270 LYMLEHNESLKSKV 283
L MLE ESL +KV
Sbjct: 605 LLMLESPESLNAKV 618
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 35/55 (63%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+GFGFV F EEA KAV MNGR + + LYV AQ++ +R+ L ++ Q
Sbjct: 228 GHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 43.1 bits (100), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 18/69 (26%), Positives = 41/69 (59%), Gaps = 1/69 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+GFGFV F + E A A++ MNG ++ + ++V + + +R+ L ++ M+
Sbjct: 131 VCDEHGSRGFGFVHFETHEAAQNAISTMNGMLLNDRKVFVGHFKSRREREVELGARAME- 189
Query: 61 IANMRMQQM 69
N+ ++ +
Sbjct: 190 FTNIYVKNL 198
>gi|392927774|ref|NP_510259.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
gi|371570799|emb|CAA90446.2| Protein PAB-2, isoform b [Caenorhabditis elegans]
Length = 575
Score = 198 bits (504), Expect = 2e-48, Method: Compositional matrix adjust.
Identities = 146/340 (42%), Positives = 176/340 (51%), Gaps = 90/340 (26%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E+GRSKGFGFVCF PEEAT AVT+MN ++IG+KPLYVALAQRKEDR+A LASQYMQR
Sbjct: 259 VDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQR 318
Query: 61 IANMRMQQ-------MGQLFQPGSTGGYFVPT----------LPQPQRFYGP-------T 96
+A +RM Q M QL+QPG GYFVP PQ + GP
Sbjct: 319 LATLRMGQQASGVPAMTQLYQPGQQ-GYFVPNPMNAQGRPGFQPQSAQIRGPPGQRVFQN 377
Query: 97 QMTQIRPQPRWAAAPQM--RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITG 154
QM P + PQ RP +T G PQ+ APR + GA
Sbjct: 378 QMFMQYPFNQRQVYPQQQGRPPMRTNDG---RPQYGMAPRPA-------GA--------- 418
Query: 155 QSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQA---------------- 198
PR GGP G Q GG P+R G P+
Sbjct: 419 -----PRVGGP------------GVQMGG---APIRQQGPAPRGAPQKPFYQGPPRQQQP 458
Query: 199 ------QIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYP- 251
G + + GQE LTS MLA A PQEQKQ+LGER++ LI++M+P
Sbjct: 459 QQHSQQPAQQPGQQGQGQSGIVIHGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPN 518
Query: 252 -ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
+ AGKITGM+LEIDNAEL+ ML+ E +SKVEEA VL
Sbjct: 519 HKEAGKITGMMLEIDNAELIMMLQDAELFRSKVEEAFGVL 558
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQY 57
G+ KGFGFV F+ + A +AV ++N I+ L V AQ+K +R A L +Y
Sbjct: 158 GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKY 212
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++G SKG+GFV F + A A+ ++NG ++ K +YV Q + R L + +
Sbjct: 62 DDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGL-KY 120
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 121 TNVFVKNFGE 130
>gi|17567133|ref|NP_510260.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
gi|3876085|emb|CAA90444.1| Protein PAB-2, isoform a [Caenorhabditis elegans]
Length = 692
Score = 198 bits (503), Expect = 3e-48, Method: Compositional matrix adjust.
Identities = 146/340 (42%), Positives = 176/340 (51%), Gaps = 90/340 (26%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E+GRSKGFGFVCF PEEAT AVT+MN ++IG+KPLYVALAQRKEDR+A LASQYMQR
Sbjct: 376 VDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQR 435
Query: 61 IANMRMQQ-------MGQLFQPGSTGGYFVPT----------LPQPQRFYGP-------T 96
+A +RM Q M QL+QPG GYFVP PQ + GP
Sbjct: 436 LATLRMGQQASGVPAMTQLYQPGQQ-GYFVPNPMNAQGRPGFQPQSAQIRGPPGQRVFQN 494
Query: 97 QMTQIRPQPRWAAAPQM--RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITG 154
QM P + PQ RP +T G PQ+ APR + GA
Sbjct: 495 QMFMQYPFNQRQVYPQQQGRPPMRTNDG---RPQYGMAPRPA-------GA--------- 535
Query: 155 QSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQA---------------- 198
PR GGP G Q GG P+R G P+
Sbjct: 536 -----PRVGGP------------GVQMGG---APIRQQGPAPRGAPQKPFYQGPPRQQQP 575
Query: 199 ------QIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYP- 251
G + + GQE LTS MLA A PQEQKQ+LGER++ LI++M+P
Sbjct: 576 QQHSQQPAQQPGQQGQGQSGIVIHGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPN 635
Query: 252 -ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
+ AGKITGM+LEIDNAEL+ ML+ E +SKVEEA VL
Sbjct: 636 HKEAGKITGMMLEIDNAELIMMLQDAELFRSKVEEAFGVL 675
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/55 (40%), Positives = 32/55 (58%), Gaps = 2/55 (3%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQY 57
G+ KGFGFV F+ + A +AV ++N I+ L V AQ+K +R A L +Y
Sbjct: 275 GKPKGFGFVAFADQDAAGQAVEKLNDSILEGTDCKLSVCRAQKKSERSAELKRKY 329
Score = 41.6 bits (96), Expect = 0.49, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 37/70 (52%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++G SKG+GFV F + A A+ ++NG ++ K +YV Q + R L + +
Sbjct: 179 DDEGNSKGYGFVHFETEHSAQTAIEKVNGMLLSDKKVYVGKFQPRAQRMKELGESGL-KY 237
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 238 TNVFVKNFGE 247
>gi|149023880|gb|EDL80377.1| rCG31475, isoform CRA_c [Rattus norvegicus]
Length = 630
Score = 190 bits (483), Expect = 7e-46, Method: Compositional matrix adjust.
Identities = 136/278 (48%), Positives = 156/278 (56%), Gaps = 54/278 (19%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQF--RSAPR------ASTGQT-VIRGANMSARPITGQS----TMGPR 161
G QGF +P +S PR A TG RG +A+ + + M
Sbjct: 439 -QGGRPQGFQGMPSALRQSGPRPALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFG 497
Query: 162 GGGPMQAPGPASVSAAGRQTGGYN------------------KYP--VRNPGTQPQAQIG 201
G G Q S + G T N KY VR+P P
Sbjct: 498 GAGAAQQGLTDSCQSGGVPTAVPNLAPRATVAAAAPRAVAPYKYASNVRSP--HP----- 550
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLG 239
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLG
Sbjct: 551 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLG 588
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|268581545|ref|XP_002645756.1| C. briggsae CBR-PAB-2 protein [Caenorhabditis briggsae]
Length = 685
Score = 189 bits (479), Expect = 2e-45, Method: Compositional matrix adjust.
Identities = 139/316 (43%), Positives = 173/316 (54%), Gaps = 38/316 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E+GRSKGFGFVCF PEEAT AVTEMN +++GSKPLYVALAQRKEDR+A LASQYMQ+
Sbjct: 371 VDENGRSKGFGFVCFEKPEEATAAVTEMNSKMMGSKPLYVALAQRKEDRRAQLASQYMQK 430
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR-FYGPTQM-TQIRPQPRWAAAPQMRPSGQ 118
+A +RM Q Q G P PQ Q+ F+ P M Q RP + AAP P G
Sbjct: 431 LATLRMGQ-----QTNGVPG-MAPIYPQGQQGFFVPNPMAAQGRPVFQPPAAPMRGPPGP 484
Query: 119 TAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAG 178
Q N Q+ P + Q RP P+ G + GP V G
Sbjct: 485 PGQRIFN-NQYMQYP--AYNQQRQGYPQQQGRPPMRTQDGRPQYGMASRPAGPPRVGGPG 541
Query: 179 RQTGGYNKYPVRNPGTQPQA----------------------QIGGIQPAAAGVQAVHVQ 216
Q GG P+R G P+ Q G + +Q
Sbjct: 542 VQMGG---APIRQQGGAPRGAPQQKPFFQGPPRQQQHAQQHTQQAPQPTQQQGQSGIIIQ 598
Query: 217 GQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYP--ELAGKITGMLLEIDNAELLYMLE 274
GQE LTS MLA A PQEQKQ+LGER++ LI++++P + AGKITGM+LEIDNAEL+ ML+
Sbjct: 599 GQETLTSHMLAQAAPQEQKQLLGERIYALIEKLFPSHKDAGKITGMMLEIDNAELIMMLQ 658
Query: 275 HNESLKSKVEEAVAVL 290
+ +SKVEEA +VL
Sbjct: 659 DGDLFRSKVEEANSVL 674
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVAL--AQRKEDRKAHLASQY 57
DG+ KGFGFV ++ P+ A KAV ++N + + L +++ AQ+K +R A L +Y
Sbjct: 269 DGKPKGFGFVAYADPDAAQKAVDDLNEKTLEGTDLKLSVCRAQKKSERTADLKRKY 324
Score = 44.7 bits (104), Expect = 0.054, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
EDG S+G+GFV F + E A A+ ++NG ++ K +YV Q + R L + +
Sbjct: 174 DEDGSSRGYGFVHFETEESAQIAIEKVNGMLLSGKKVYVGKFQTRAQRLKELGESGL-KY 232
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 233 TNVFVKNFGE 242
>gi|444726222|gb|ELW66761.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 568
Score = 187 bits (475), Expect = 6e-45, Method: Compositional matrix adjust.
Identities = 136/303 (44%), Positives = 170/303 (56%), Gaps = 52/303 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 301 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 360
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQPQRFY---GPTQMTQIRPQPRWAAAPQMR 114
++ +R MG QP S YF+ PQ G MT I+ PRW A P R
Sbjct: 361 LSTVRALGGPLMGAFQQPTS---YFLSAAPQAPAQAAYYGSGPMTPIQTAPRWTAQPP-R 416
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
PS + P + Q SA +S +R A+ A P Q P +
Sbjct: 417 PSSASMIRPPGMTQHLSAHVSS-----VRQASTQA---------------PHQVPHAQRM 456
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQE--PLTSTMLAAAQPQ 232
G Q Q + G + ++ V ++G E P + + A++
Sbjct: 457 GECG---------------GQGQEECGHGESKVLVMELV-LEGSEDRPPWARQVCASEVV 500
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
GERL+PLI+ ++ +LAGKITGMLLEIDN+ELL MLE ESL +K+EEAVAVLQA
Sbjct: 501 HT----GERLYPLIRDVHHQLAGKITGMLLEIDNSELLLMLESPESLHAKIEEAVAVLQA 556
Query: 293 HQA 295
HQA
Sbjct: 557 HQA 559
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 35/55 (63%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+GFGFV F EEA KAV MNG+ + + LYV AQ++ +R+ L ++ Q
Sbjct: 203 GHSRGFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYVGRAQKRLERQNELKRRFEQ 257
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 38/59 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ ++ S+GFGFV F + + A +A++ MNG ++ + ++V + + +R+A L ++ M+
Sbjct: 106 VCDEHGSRGFGFVHFETHDAAQRAISTMNGMLLNDRKVFVGHFKSRREREAELGARVME 164
>gi|196008415|ref|XP_002114073.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
gi|190583092|gb|EDV23163.1| hypothetical protein TRIADDRAFT_27786 [Trichoplax adhaerens]
Length = 622
Score = 187 bits (474), Expect = 7e-45, Method: Compositional matrix adjust.
Identities = 139/317 (43%), Positives = 174/317 (54%), Gaps = 51/317 (16%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G S+GFGFVCFSSPEEATKAVTEMNGRII SKPLYVALAQRKEDRKA LA+QY+QR+
Sbjct: 337 DEKGISRGFGFVCFSSPEEATKAVTEMNGRIIISKPLYVALAQRKEDRKAQLAAQYVQRM 396
Query: 62 ANMRMQQ-----MGQLFQPGSTGGYFVPTL----PQPQRFYGPTQMTQIRPQPRWAAAPQ 112
+ +R+ Q + Q+FQ GGY++P + Q QRFY QM +PRW
Sbjct: 397 STLRIPQPGQPGVNQMFQ---QGGYYMPGMHQGQQQQQRFYATQQMP---ARPRWQNQQM 450
Query: 113 MRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPA 172
MR N S G + RG M + PR G Q P+
Sbjct: 451 MR----------NSGGGSSYGGIGGGSQMGRGRGMRFAGV-------PRSQG-QQNVNPS 492
Query: 173 SVSAAGRQTGGYNKYPVRNPGTQP---QAQIGGIQPAAAGVQAVH------VQGQEPLTS 223
SAA N V N P + + I P A QA H Q + LT+
Sbjct: 493 QRSAAA------NAALVSNQPRHPPYKHSNVRNIPPQAPS-QANHQTRAQPAQDADNLTT 545
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMY-PELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+ +PQ QKQ+LGE+L+P ++ + E AGKITGMLLEI+NAE+L+MLE E+L SK
Sbjct: 546 HLSQVDEPQ-QKQILGEKLYPRVEAICGSEKAGKITGMLLEIENAEVLHMLESKEALDSK 604
Query: 283 VEEAVAVLQAHQAKQAA 299
V+EA+ VL H Q +
Sbjct: 605 VQEAIDVLDKHSKTQES 621
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 43/73 (58%), Gaps = 5/73 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G+S+GFGFV + + E A KAV +N + + +YVA AQ+K +R A L QY Q
Sbjct: 234 DDSGKSRGFGFVSYETHEAAQKAVETLNEKEFDLRRMYVARAQKKSERSALLRRQYEQ-- 291
Query: 62 ANMRMQQMGQLFQ 74
+ Q+M + FQ
Sbjct: 292 ---KKQEMMKRFQ 301
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 21/60 (35%), Positives = 38/60 (63%), Gaps = 3/60 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA-LAQRKE--DRKAHLASQY 57
+ E+G SKG+ FV F + E A +A+ ++NG ++ K ++V RKE ++ +LA++Y
Sbjct: 140 LDENGNSKGYAFVHFETQEAANRAIEKVNGMLLSGKKVFVGHFMSRKERMEKIGNLAAKY 199
>gi|358334962|dbj|GAA31742.2| polyadenylate-binding protein, partial [Clonorchis sinensis]
Length = 738
Score = 184 bits (468), Expect = 3e-44, Method: Compositional matrix adjust.
Identities = 142/366 (38%), Positives = 181/366 (49%), Gaps = 85/366 (23%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+GRSKGFGFVCF+ PE+A +AVTEMN ++GSKPLYVALAQRKEDR+A L +++ QR+A
Sbjct: 320 NGRSKGFGFVCFTQPEQAARAVTEMNATLVGSKPLYVALAQRKEDRRAKLIAEHQQRLAQ 379
Query: 64 MR---MQQMGQLFQPGSTGGYFVPT-LPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT 119
R Q + + YF PT PQ QR+Y PT I QPRW A M G
Sbjct: 380 YRSPVTQMLPAAAAHAAAPSYFPPTAFPQAQRYYHPTSAV-ISSQPRWNRAAAMS-GGMP 437
Query: 120 AQ------GFPNIP-QFRSAPRASTGQTVIRGANMS--------ARPIT----------- 153
AQ P +P Q+ AP + G + A M+ RPI
Sbjct: 438 AQLGGGVSARPPMPTQYIGAPNPAAGVAANQMATMAHLRSPAGVGRPIVPNAMSAMPTAP 497
Query: 154 ---GQSTMGP---------RGGGPMQ--APGPAS-----VSAAGRQTGGYNKYPV----- 189
G + M P R G PMQ GPA S A GG N PV
Sbjct: 498 HMPGSAMMNPAAGQRQSAGRPGVPMQQVMTGPAGGIPQRPSMASVVAGGPNVRPVAPQVP 557
Query: 190 ------------------------RNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
RN TQP G + A + Q PLT +
Sbjct: 558 RNVMHPSMGAMPGASGNVRFNQTARNVSTQPTTAPGNMPSVLA-----PLGDQSPLTISA 612
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA ++QK+ LGERLFPL+Q MYP LA K+TGMLL +DNAE++++LE ESL++K+EE
Sbjct: 613 LAQLSEEDQKRTLGERLFPLVQEMYPTLAQKLTGMLLGVDNAEVIHLLESKESLRAKLEE 672
Query: 286 AVAVLQ 291
++VL+
Sbjct: 673 GISVLK 678
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 47/73 (64%), Gaps = 5/73 (6%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G+SKGFGFVCF P+ A +AV M+G+ I + LY + AQRKE+R+ L QR+
Sbjct: 216 EGKSKGFGFVCFHDPDHAEQAVRVMHGKEINGRALYASRAQRKEERQEELK----QRLEK 271
Query: 64 MRMQQMGQLFQPG 76
R +++ + + PG
Sbjct: 272 QRAERLSK-YVPG 283
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 30/51 (58%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
M E G SKG+GFV F E A +A+ ++NG +I + +YV DRK+
Sbjct: 122 MDEHGNSKGYGFVHFEKEECAERAIEKINGMMINDRVVYVGKFIPSSDRKS 172
>gi|349803919|gb|AEQ17432.1| putative poly binding cytoplasmic 1 [Hymenochirus curtipes]
Length = 590
Score = 182 bits (461), Expect = 2e-43, Method: Compositional matrix adjust.
Identities = 141/317 (44%), Positives = 170/317 (53%), Gaps = 77/317 (24%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFS YMQR
Sbjct: 325 MMEGGRSKGFGFVCFS----------------------------------------YMQR 344
Query: 61 IANMRMQQ-MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP----- 111
+A++R+ + +QP + YF+ +P Q +Y P Q+TQ+RP PRW A
Sbjct: 345 MASVRVPNPVINPYQPPPSS-YFMAAIPPAQNRAAYYPPGQITQLRPSPRWTAQSARPHP 403
Query: 112 ------QMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGP 165
+RP+ F + PR + Q V AN S + TMGPR P
Sbjct: 404 FQNMPGTIRPTAPRPPAFSTMRPASQVPRVVSAQRV---ANTSTQ------TMGPR---P 451
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQ-AVHVQGQEPLTST 224
A A+ S R Y KY PG + Q + QP A Q AVHVQGQEPLT++
Sbjct: 452 TAAAAAATNSV--RTVPQY-KYA---PGVRNQQHLNA-QPQVAMQQPAVHVQGQEPLTAS 504
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+
Sbjct: 505 MLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVD 564
Query: 285 EAVAVLQAHQAKQAAVK 301
EAV VLQAHQAK+AA K
Sbjct: 565 EAV-VLQAHQAKEAAQK 580
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|148698436|gb|EDL30383.1| mCG5546, isoform CRA_b [Mus musculus]
Length = 580
Score = 181 bits (459), Expect = 4e-43, Method: Compositional matrix adjust.
Identities = 124/256 (48%), Positives = 144/256 (56%), Gaps = 40/256 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 343 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 402
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 403 VAGMRALPASAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 455
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 456 -QGGRPQGFQGMP---SALRQSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 511
Query: 175 SAAG--------------RQTGGYNKY--PVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQ 218
+ + KY VR+P P IQP A AVHVQGQ
Sbjct: 512 QSGAVPNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVHVQGQ 564
Query: 219 EPLTSTMLAAAQPQEQ 234
EPLT++MLAAA PQEQ
Sbjct: 565 EPLTASMLAAAPPQEQ 580
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 245 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQ 299
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 148 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 206
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ G+ F
Sbjct: 207 FTNVYIKNFGEEVDDGNLKELF 228
>gi|301125993|ref|XP_002909814.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
gi|262103703|gb|EEY61755.1| polyadenylate-binding protein, putative [Phytophthora infestans
T30-4]
Length = 587
Score = 179 bits (455), Expect = 1e-42, Method: Compositional matrix adjust.
Identities = 132/297 (44%), Positives = 173/297 (58%), Gaps = 30/297 (10%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G S+GFGFVCFS+PEEA KAV EMNG++I KP+YVALAQRKE R+A L +Q+ Q+ A
Sbjct: 314 NGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQQRAG 373
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPR--WAAAPQMRPSGQTAQ 121
M + + + QP P FYG Q Q+ PQ R + QM P G
Sbjct: 374 MVVGRGMPMGQP--------PMYGAAPMFYG--QPGQLPPQARQGFMYPQQMMPRGVQRG 423
Query: 122 GFPNIPQFRSAPRASTGQTV--IRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGR 179
P + AP A G + +R A+ +A GPR G ++A P + +++ R
Sbjct: 424 PMPYGARVPGAP-APGGYPMPWLRHAHAAAAWPAASWPSGPRPAGSLRALRPTAATSSTR 482
Query: 180 QTGGYNKYPVRNPGTQPQAQI--GGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQM 237
T P T P + G+ P AA VQ G EPLTS LAAA P+ QK M
Sbjct: 483 LT----------PATTPARDVPPQGVMPPAAPVQNA---GPEPLTSAALAAASPEIQKNM 529
Query: 238 LGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
+GERL+PLI R PELAGKITGMLLE+DN ELL++LE E+L++K++EA+ VL+AHQ
Sbjct: 530 IGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKIQEAMTVLEAHQ 586
>gi|345316987|ref|XP_003429815.1| PREDICTED: embryonic polyadenylate-binding protein A-like
[Ornithorhynchus anatinus]
Length = 540
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 119/249 (47%), Positives = 146/249 (58%), Gaps = 53/249 (21%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYM R
Sbjct: 279 MTESGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMHR 338
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQPQ---RFYGPTQMTQIRPQPRWAAAPQMR 114
++ +R MG QP GYF+P LPQPQ FYGP+ + +RP PRWA
Sbjct: 339 LSTIRTLVAPIMGSFQQP---TGYFLPALPQPQTRSTFYGPSPVDPVRPAPRWA------ 389
Query: 115 PSGQTAQGFPNIPQFRS--APRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPA 172
GQT + + + P R+ APR R ++G ST+ QA PA
Sbjct: 390 --GQTPRAY-STPLMRTPLAPR---------------RFLSGISTVKQ---ASTQASQPA 428
Query: 173 SVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQ 232
S+S QT ++Y +P + Q + AVHV GQEPLT++MLA A PQ
Sbjct: 429 SLS----QTVARSRYNSVSPLCRVQVE-----------AAVHVLGQEPLTASMLAKAPPQ 473
Query: 233 EQKQMLGER 241
EQKQML R
Sbjct: 474 EQKQMLARR 482
>gi|296470779|tpg|DAA12894.1| TPA: polyadenylate-binding protein 1-like [Bos taurus]
Length = 269
Score = 179 bits (453), Expect = 2e-42, Method: Compositional matrix adjust.
Identities = 123/266 (46%), Positives = 154/266 (57%), Gaps = 39/266 (14%)
Query: 55 SQYMQRIANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA 109
+QYMQR+A++R + +QP GYF+ +PQ Q +Y P Q+ Q+RP P W A
Sbjct: 13 NQYMQRMASVRAVPNPVINPYQPALPSGYFMAAIPQAQNRAEYYPPNQIAQLRPSPHWTA 72
Query: 110 APQMRPSGQTAQGFPNIPQ--FRSAPRASTGQTVIRGAN------MSARPITGQST---- 157
G F N+P +APR + +R A+ MS + + ST
Sbjct: 73 ------QGARPHPFQNMPSAICPAAPRPPL--STVRPASSQVPRVMSTQRVANTSTQTMG 124
Query: 158 MGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNP--GTQPQAQIGGIQPAAAGVQAVHV 215
+ P P ++ G VRNP Q Q+ QPA VHV
Sbjct: 125 LCPAAAAAAATPAVRTIPQYKYAAG------VRNPQQHLNAQPQVTMQQPA------VHV 172
Query: 216 QGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEH 275
QGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE
Sbjct: 173 QGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLES 232
Query: 276 NESLKSKVEEAVAVLQAHQAKQAAVK 301
ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 233 LESLRSKVDEAVAVLQAHQAKEAAQK 258
>gi|14906166|gb|AAK72507.1| putative polyadenylate-binding protein [Aedes aegypti]
Length = 289
Score = 177 bits (450), Expect = 4e-42, Method: Compositional matrix adjust.
Identities = 85/108 (78%), Positives = 93/108 (86%), Gaps = 2/108 (1%)
Query: 1 MSEDGRSKGFGFVCFS-SPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M E+GRSKGFGFV FS EEATKAVTEMNGRI+GSKPLYVALAQR EDRKAHLASQYMQ
Sbjct: 142 MLEEGRSKGFGFVLFSQHAEEATKAVTEMNGRIVGSKPLYVALAQRTEDRKAHLASQYMQ 201
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRW 107
R+ANMRMQ MGQ+FQPG GGY+VPTLPQPQRF+ Q++QIR P W
Sbjct: 202 RMANMRMQHMGQIFQPGGNGGYYVPTLPQPQRFFSK-QVSQIRTTPGW 248
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 1/60 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
M +DG+ +GFGFV F +PE A AV E+NG+ +G K LYV AQ+K +R+ L ++ Q
Sbjct: 39 MIKDGKGRGFGFVAFENPESAEHAVQELNGKELGEGKILYVGRAQKKNERQMELKRRFEQ 98
>gi|444732122|gb|ELW72434.1| Polyadenylate-binding protein 1 [Tupaia chinensis]
Length = 291
Score = 174 bits (442), Expect = 4e-41, Method: Compositional matrix adjust.
Identities = 134/303 (44%), Positives = 161/303 (53%), Gaps = 77/303 (25%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E G SKGFGF CFS PEEATKAVTEMNGRI+ +KP V
Sbjct: 53 MMEGGCSKGFGFGCFSFPEEATKAVTEMNGRIVATKPFIV-------------------- 92
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+ F P +Y P+Q+ Q+RP P W A G
Sbjct: 93 ----------RSFSPA---------------YYPPSQIAQLRPSPHWTA------QGARP 121
Query: 121 QGFPNIPQFRSAPRASTGQ---TVIRGAN------MSARPITGQSTMGPRGGGPMQAPGP 171
F N+P A R +T + + +R A+ MS + + ST + GP A
Sbjct: 122 HTFQNMP---GAIRLATPRPPFSTMRPASSQVPRVMSTQRVANTST---QTIGPPPAAAA 175
Query: 172 ASVSAAGRQTGGYNKYP--VRNP--GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
A+ + A R Y KY VRNP Q Q+ QPA VHVQGQEPLT++MLA
Sbjct: 176 ATATPAVRTIPQY-KYAAGVRNPQQHLNAQPQVTMQQPA------VHVQGQEPLTASMLA 228
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
+A PQEQKQMLGE LFPLIQ M+P LAGKITGML EIDN+ELL+MLE ESL+SK +EAV
Sbjct: 229 SAPPQEQKQMLGEWLFPLIQAMHPTLAGKITGMLFEIDNSELLHMLESPESLRSKDDEAV 288
Query: 288 AVL 290
AVL
Sbjct: 289 AVL 291
>gi|166157896|ref|NP_001107551.1| polyadenylate-binding protein 1-like [Mus musculus]
gi|187960776|gb|ACD43645.1| embryonic poly(A)-binding protein [Mus musculus]
Length = 607
Score = 173 bits (439), Expect = 7e-41, Method: Compositional matrix adjust.
Identities = 141/311 (45%), Positives = 177/311 (56%), Gaps = 46/311 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QY +R
Sbjct: 326 MTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPSG 117
++ + QP S Y +P +PQ +Y +T ++P PRW A P PS
Sbjct: 386 PSH---PVLSSFQQPTS---YLLPAVPQSTAQAVYYSSGSITPMQPDPRWTAQPHGPPS- 438
Query: 118 QTAQGFPNIPQFRSAPRASTGQTVI--RGANMSARPI--------TGQSTMGPRGGGPMQ 167
T ++ Q P ++T I RGA+ + + G T GP G G
Sbjct: 439 -TCPPAASVVQ----PLSTTQHPCIHLRGASQVSSQVPHTQRVVNIGTQTTGPGGEGS-S 492
Query: 168 APGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
PG V P R GT G+Q + AV+V G +PLT +MLA
Sbjct: 493 IPGQLLV-------------PHR--GTSAVHSAHGVQES-----AVYVPGHQPLTVSMLA 532
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
AA EQKQM+GERL+ LI L GKITGMLLE+DN ELL +LE ESL +K+EEAV
Sbjct: 533 AAPLHEQKQMIGERLYSLIHDACAPLTGKITGMLLELDNLELLLLLESPESLHAKIEEAV 592
Query: 288 AVLQAHQAKQA 298
AVLQ H+ ++
Sbjct: 593 AVLQVHREMES 603
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+S+GFGFV F EEA KAV MNG+ + + LYV AQ++ +R++ L ++ Q
Sbjct: 227 NGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQ 282
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ-------YMQ 59
S+GFGFV F + E A KA+ MNG ++ + ++V + ++ R+A L ++ Y++
Sbjct: 137 SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVK 196
Query: 60 RI-ANMRMQQMGQLF 73
+ AN+ Q++ LF
Sbjct: 197 NLHANVDEQRLQDLF 211
>gi|187956894|gb|AAI58031.1| 1810053B01Rik protein [Mus musculus]
Length = 607
Score = 172 bits (437), Expect = 1e-40, Method: Compositional matrix adjust.
Identities = 139/305 (45%), Positives = 175/305 (57%), Gaps = 34/305 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QY +R
Sbjct: 326 MTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPSG 117
++ + QP S Y +P +PQ +Y +T ++P PRW A P PS
Sbjct: 386 PSH---PVLSSFQQPTS---YLLPAVPQSTAQAVYYSSGSITPMQPDPRWTAQPHGPPS- 438
Query: 118 QTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAA 177
T ++ Q P ++T I ++G S + Q P V
Sbjct: 439 -TCPPAASVVQ----PLSTTQHPCIH--------LSGASQVSS------QVPHTQRVVNI 479
Query: 178 GRQTGGYNKYPVRNPG--TQPQAQIGGIQPAAAGVQ--AVHVQGQEPLTSTMLAAAQPQE 233
G QT G PG P + +A GVQ AV+V G +PLT +MLAAA E
Sbjct: 480 GTQTTGPGGEGSSIPGQLLVPHRGTSAVH-SAHGVQESAVYVPGHQPLTVSMLAAAPLHE 538
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQM+GERL+ LI L GKITGMLLE+DN ELL +LE ESL +K+EEAVAVLQ H
Sbjct: 539 QKQMIGERLYSLIHDACAPLTGKITGMLLELDNLELLLLLESPESLHAKIEEAVAVLQVH 598
Query: 294 QAKQA 298
+ ++
Sbjct: 599 REMES 603
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+S+GFGFV F EEA KAV MNG+ + + LYV AQ++ +R++ L ++ Q
Sbjct: 227 NGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQ 282
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ-------YMQ 59
S+GFGFV F + E A KA+ MNG ++ + ++V + ++ R+A L ++ Y++
Sbjct: 137 SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVK 196
Query: 60 RI-ANMRMQQMGQLF 73
+ AN+ Q++ LF
Sbjct: 197 NLHANVDEQRLQDLF 211
>gi|340375830|ref|XP_003386437.1| PREDICTED: polyadenylate-binding protein 1-like [Amphimedon
queenslandica]
Length = 618
Score = 172 bits (435), Expect = 2e-40, Method: Compositional matrix adjust.
Identities = 128/300 (42%), Positives = 161/300 (53%), Gaps = 43/300 (14%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFSSPEEATKAVTEMNGRI+ SKPLYVALAQRKE+R+AHLA+Q MQRI
Sbjct: 332 DEFGHSKGFGFVCFSSPEEATKAVTEMNGRIVVSKPLYVALAQRKEERQAHLAAQRMQRI 391
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
A Q Q++ P Y++P + + F+ T M W P RP +
Sbjct: 392 ARGIPQGQMQMYPP-----YYMPGIQNQRPFF--TAMAAGYTARPWQGGPMHRP---FSG 441
Query: 122 GFPNIPQFR-SAPRASTGQTVIRGANMSARP----ITGQSTMGPRG--GGPMQAPGPASV 174
G+ + R + PR S G G P I Q + P+G GG Q
Sbjct: 442 GYNMHHRTRANVPRPSVGGAGGAGGQRMNTPQTQRIAPQQRLNPQGRPGGVQQT--KLQF 499
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
SA R G + G P EPL++ L+ P ++
Sbjct: 500 SAGARNQPGGPMGGGMDLGQDP----------------------EPLST--LSQTDPMKR 535
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
KQ++GE L+ I +P+ AGKITGMLLE+DN+ELL+MLE ESL SKVEEAV VL+ H+
Sbjct: 536 KQIIGEHLYRAISASHPDKAGKITGMLLEMDNSELLHMLEAPESLNSKVEEAVNVLREHE 595
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 30/50 (60%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
+G SKGFGFV F S E A+ AV ++ I+ + +Y AQ+K +R L
Sbjct: 231 EGLSKGFGFVSFESHEAASAAVQAVHNSIVNGRQVYCGRAQKKNERSREL 280
Score = 42.0 bits (97), Expect = 0.31, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 42/75 (56%), Gaps = 4/75 (5%)
Query: 1 MSEDG--RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYM 58
++ DG SKGFGFV F E A A+ ++NG+++ +YV ++DR +H + +
Sbjct: 134 VATDGNRHSKGFGFVHFDEQEAADLAIEKVNGKLLNDMKVYVGKFIPRKDR-SH-TNGFN 191
Query: 59 QRIANMRMQQMGQLF 73
Q N+ ++ G+ F
Sbjct: 192 QHYTNVFIKNFGEDF 206
>gi|432102762|gb|ELK30241.1| Polyadenylate-binding protein 1-like protein [Myotis davidii]
Length = 603
Score = 171 bits (433), Expect = 4e-40, Method: Compositional matrix adjust.
Identities = 121/286 (42%), Positives = 154/286 (53%), Gaps = 70/286 (24%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYM-Q 59
M+E G SKGFGFVCFSSPEEATKAVTEMNG I+G+KPLYVALAQRK++RKA L +Q+M Q
Sbjct: 329 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGCILGTKPLYVALAQRKDERKAILTNQFMQQ 388
Query: 60 RIANMRMQ---QMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPS 116
R++N+ +G QP S YF+PT+PQ + P + + P++
Sbjct: 389 RLSNVWALGGPHLGSFQQPVS---YFLPTVPQVRACLQPDSQVEQEESFKANIVPRLLLP 445
Query: 117 GQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSA 176
+TA GF + + RA N S R M PR +Q P
Sbjct: 446 -ETAGGFHPV-----SKRAD--------ENPSLR-------MCPRHHVQVQEPA------ 478
Query: 177 AGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQ 236
V PG +P LT +MLAAA +QKQ
Sbjct: 479 ------------VCIPGQEP------------------------LTVSMLAAAPLHKQKQ 502
Query: 237 MLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
M+GERL+PLI ++ +LAGKITGMLLEIDN+ELL+MLE ESL +K
Sbjct: 503 MIGERLYPLIYNVHTQLAGKITGMLLEIDNSELLFMLESPESLNAK 548
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 29/70 (41%), Positives = 41/70 (58%), Gaps = 6/70 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G S+GFGFV F EEA KAV +MNG+ + + LYV AQ+ +R+ L ++ Q
Sbjct: 225 DDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGQLLYVGRAQKWAERQNELKRKFQQ-- 282
Query: 62 ANMRMQQMGQ 71
M+QM Q
Sbjct: 283 ----MKQMKQ 288
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 45/71 (63%), Gaps = 4/71 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ- 59
+ +D S+GFGFV F + E A +A++ MNG ++ ++ ++V+ + +++R+A L + M+
Sbjct: 131 VCDDHGSRGFGFVHFETREAAQQAISTMNGMLLNNRKVFVSHFKSRQEREAELGVRAMEF 190
Query: 60 ---RIANMRMQ 67
+ N++M
Sbjct: 191 TNVYVKNLQMD 201
>gi|301606181|ref|XP_002932728.1| PREDICTED: polyadenylate-binding protein 1-B-like [Xenopus
(Silurana) tropicalis]
Length = 447
Score = 171 bits (432), Expect = 6e-40, Method: Compositional matrix adjust.
Identities = 120/310 (38%), Positives = 170/310 (54%), Gaps = 47/310 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFS+P EA KA++EMNG+I+ SKPLYVA AQRK++R+ LA QY QR
Sbjct: 166 MREGGRSKGFGFVCFSTPAEARKALSEMNGKILASKPLYVAWAQRKQERQVSLAQQYTQR 225
Query: 61 -----IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRP 115
I N ++ L S +P Q + + +I P+ A + R
Sbjct: 226 MEKAWIPNTKVNPNQALLSRCSMA-----PIPAVQN-HSEDSLCRI---PKQTAQFKQR- 275
Query: 116 SGQTAQGF-PNIPQF--RSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPA 172
+ AQG P+ Q+ R+ P+ ST + + + + G
Sbjct: 276 CYRNAQGTAPHSFQYMPRAHPQISTRKYKLIPTKTAVNLVRG------------------ 317
Query: 173 SVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQ--AVHVQGQEPLTSTMLAAAQ 230
+SA R NKY + T+ ++ + A +Q A+ VQGQEPLT ++L +A
Sbjct: 318 IMSATSR-----NKYAAGDCNTELHSE----KQTQAAMQHPAICVQGQEPLTISLLVSAS 368
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P EQKQMLG RLFPL+Q + +LA KITG+LLE D +E++YMLE E L++ +AV +L
Sbjct: 369 PHEQKQMLGVRLFPLVQIIDKKLAEKITGILLEFDTSEIIYMLESPELLRTMANKAVTLL 428
Query: 291 QAHQAKQAAV 300
Q HQ ++ A+
Sbjct: 429 QGHQVQEVAI 438
>gi|256075085|ref|XP_002573851.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044948|emb|CCD82496.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 726
Score = 170 bits (430), Expect = 8e-40, Method: Compositional matrix adjust.
Identities = 129/372 (34%), Positives = 176/372 (47%), Gaps = 80/372 (21%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+ RSKGFGFVCF++PE+A +AVT+MNG IIGSKPLYVALAQRKEDR+A L ++ QR+A
Sbjct: 332 NNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQ 391
Query: 64 MRMQQMGQL-FQPGSTG--GYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQM------- 113
R + PG +F P Q QRFY P+ + QPRW A +
Sbjct: 392 YRNPVASMIPAVPGHAAPHSFFPPAFQQTQRFYHPSGAV-LSSQPRWNRAAGIPAQIGGL 450
Query: 114 --------------RPSGQTAQGFPNIPQFRS----APRASTGQTVIRGANMSARPITGQ 155
P+ TA + QFR+ P G + I ++ + Q
Sbjct: 451 PNRPPVAGYYPSAPNPAAITANQMASFAQFRTPGVNRPMVPNGMSSIPSTHLQTAAVFNQ 510
Query: 156 S------------------TMGPRGGGPMQAP-------GPASVSAAGRQ---------- 180
+ +G GG Q P GP SV+ A RQ
Sbjct: 511 TANQQRQQASGRQGVVVPQVLGATAGGLNQRPTAASVVAGPPSVNPAMRQQVASQVPRAV 570
Query: 181 --TGGYN----------KYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
+G N RN QP G + +Q + QGQ LT + LA
Sbjct: 571 MHSGMSNITSTATNVRFHQTARNVSAQPTLVPAG--SMSTLLQPLGDQGQ--LTISALAQ 626
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
++QK+ LGE L+P I+ MYP LA K+TGMLL +DNAE++ +LE E L++K EE +
Sbjct: 627 LSEEDQKRTLGEHLYPRIKAMYPNLANKLTGMLLGVDNAEVINLLESEELLRAKCEEGIN 686
Query: 289 VLQAHQAKQAAV 300
VL++ Q +Q +
Sbjct: 687 VLRSSQNQQGDI 698
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
+G+SKGFGFVCF P+ A AV M+G+ I + LY A AQRKE+R+ L
Sbjct: 228 EGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEEL 277
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
M E+G+SKG+GFV F E A +A+ ++N II + +YV K +RK+
Sbjct: 134 MDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKS 184
>gi|354484923|ref|XP_003504635.1| PREDICTED: polyadenylate-binding protein 1-like [Cricetulus
griseus]
Length = 672
Score = 169 bits (429), Expect = 1e-39, Method: Compositional matrix adjust.
Identities = 138/306 (45%), Positives = 169/306 (55%), Gaps = 34/306 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QY ++
Sbjct: 389 MTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRQ 448
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPSG 117
++ + Q Y + + Q +YG M ++P PRWA P
Sbjct: 449 LSRPVLSSFQQ------PTNYLLSAVSQSTAQAVYYGSGSMAPMQPDPRWAVQPHG---- 498
Query: 118 QTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAA 177
P P AS Q + G R ++ Q P V
Sbjct: 499 ---------PSSTCPPAASVVQPL--GTMQHPRVHLNNASQASS-----QVPHTQRVVNI 542
Query: 178 GRQTGGYNKYPVRNPGTQPQAQIGGIQP--AAAGVQ--AVHVQGQEPLTSTMLAAAQPQE 233
G QT G PG QP G +A GVQ AV+V G +PLT +MLAAA E
Sbjct: 543 GTQTTGSGGEGCSIPG-QPLLTHRGSSAVHSAHGVQEPAVYVPGHQPLTVSMLAAAPLHE 601
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQM+GERL+ LIQ L GKITGMLLE+DN ELL +LE ESL +K+EEAVAVL+AH
Sbjct: 602 QKQMIGERLYSLIQDTCAPLTGKITGMLLEMDNLELLLLLESPESLHAKIEEAVAVLRAH 661
Query: 294 QAKQAA 299
Q ++A
Sbjct: 662 QEMESA 667
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+S+GFGFV F EEA KAV MNG+ + + LYV AQ++ +R++ L ++ Q
Sbjct: 288 DSNGQSRGFGFVNFEKHEEAQKAVDHMNGKEVRGQLLYVGRAQKRAERQSELKRRFEQ 345
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
S+GFGFV F + E A KA+ MNG ++ + ++V + ++ R+A L ++
Sbjct: 200 SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 249
>gi|256075087|ref|XP_002573852.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044949|emb|CCD82497.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 724
Score = 169 bits (428), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 128/370 (34%), Positives = 175/370 (47%), Gaps = 78/370 (21%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+ RSKGFGFVCF++PE+A +AVT+MNG IIGSKPLYVALAQRKEDR+A L ++ QR+A
Sbjct: 332 NNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQ 391
Query: 64 MRMQQMGQL-FQPGSTG--GYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQM------- 113
R + PG +F P Q QRFY P+ + QPRW A +
Sbjct: 392 YRNPVASMIPAVPGHAAPHSFFPPAFQQTQRFYHPSGAV-LSSQPRWNRAAGIPAQIGGL 450
Query: 114 --------------RPSGQTAQGFPNIPQFRS----APRASTGQTVIRGANMSARPITGQ 155
P+ TA + QFR+ P G + I ++ + Q
Sbjct: 451 PNRPPVAGYYPSAPNPAAITANQMASFAQFRTPGVNRPMVPNGMSSIPSTHLQTAAVFNQ 510
Query: 156 S------------------TMGPRGGGPMQAP-------GPASVSAAGR----------Q 180
+ +G GG Q P GP SV+ A R
Sbjct: 511 TANQQRQQASGRQGVVVPQVLGATAGGLNQRPTAASVVAGPPSVNPAMRVASQVPRAVMH 570
Query: 181 TGGYN----------KYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
+G N RN QP G + +Q + QGQ LT + LA
Sbjct: 571 SGMSNITSTATNVRFHQTARNVSAQPTLVPAG--SMSTLLQPLGDQGQ--LTISALAQLS 626
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
++QK+ LGE L+P I+ MYP LA K+TGMLL +DNAE++ +LE E L++K EE + VL
Sbjct: 627 EEDQKRTLGEHLYPRIKAMYPNLANKLTGMLLGVDNAEVINLLESEELLRAKCEEGINVL 686
Query: 291 QAHQAKQAAV 300
++ Q +Q +
Sbjct: 687 RSSQNQQGDI 696
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 35/50 (70%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
+G+SKGFGFVCF P+ A AV M+G+ I + LY A AQRKE+R+ L
Sbjct: 228 EGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEEL 277
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
M E+G+SKG+GFV F E A +A+ ++N II + +YV K +RK+
Sbjct: 134 MDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKS 184
>gi|119596296|gb|EAW75890.1| hCG2019100, isoform CRA_d [Homo sapiens]
Length = 639
Score = 168 bits (425), Expect = 3e-39, Method: Compositional matrix adjust.
Identities = 121/279 (43%), Positives = 152/279 (54%), Gaps = 44/279 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG +T +P PRW + P R
Sbjct: 386 LSTMRTLSNPLLGSFQQPSS---YFLPAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-R 441
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQT---VIRGANMSARPIT-GQSTMGPRGGGPMQAPG 170
PS + P +P+ A +S Q V R + R G T GP G G PG
Sbjct: 442 PSCASMVRPPVVPRRPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCC-TPG 500
Query: 171 ----PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTML 226
P S+A T Y V+ P AVH+ GQEPLT++ML
Sbjct: 501 RPLLPCKCSSAAHST-----YRVQEP-------------------AVHIPGQEPLTASML 536
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEID 265
AAA EQKQM+G + +++R + +LL D
Sbjct: 537 AAAPLHEQKQMIGT-CYLVLKRWSDWMVLSFLPLLLSCD 574
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 33/58 (56%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 225 DNSGHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 18/63 (28%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ ++ N+ +
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE-FTNIYV 195
Query: 67 QQM 69
+ +
Sbjct: 196 KNL 198
>gi|392339709|ref|XP_003753884.1| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 1-like [Rattus norvegicus]
Length = 475
Score = 167 bits (424), Expect = 4e-39, Method: Compositional matrix adjust.
Identities = 135/305 (44%), Positives = 169/305 (55%), Gaps = 32/305 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QY +R
Sbjct: 192 MTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRR 251
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPSG 117
++ + QP S Y +P + Q +Y + ++P PRW A P
Sbjct: 252 LSR---SVLSSFQQPTS---YLLPAVHQSTTQTMYYSSASIAPMQPDPRWTAQPHG---- 301
Query: 118 QTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAA 177
P P AS V++ + + P + Q P V
Sbjct: 302 ---------PSSTCPPAAS----VVQPLSTAPHPCIH---LSSASQASSQVPHTQRVVNI 345
Query: 178 GRQTGGYNKYPVRNPGTQPQAQIG-GIQPAAAGVQ--AVHVQGQEPLTSTMLAAAQPQEQ 234
G QT G PG A G +A GVQ V+V G +PLT +ML AA EQ
Sbjct: 346 GTQTTGPGGEGSCIPGQPLLAHRGSSAVHSAHGVQESTVYVPGHQPLTVSMLDAAPLHEQ 405
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
KQM+GERL+ LI L GKITGMLLE+DN ELL +LE ESL +K+EEAVAVL+AH+
Sbjct: 406 KQMIGERLYSLIHDACAPLTGKITGMLLEMDNLELLLLLESPESLHAKIEEAVAVLKAHR 465
Query: 295 AKQAA 299
A ++A
Sbjct: 466 AMESA 470
>gi|392346932|ref|XP_230831.6| PREDICTED: poly(A) binding protein, cytoplasmic 1-like [Rattus
norvegicus]
Length = 609
Score = 166 bits (421), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 135/305 (44%), Positives = 169/305 (55%), Gaps = 32/305 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QY +R
Sbjct: 326 MTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPSG 117
++ + QP S Y +P + Q +Y + ++P PRW A P
Sbjct: 386 LSR---SVLSSFQQPTS---YLLPAVHQSTTQTMYYSSASIAPMQPDPRWTAQPHG---- 435
Query: 118 QTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAA 177
P P AS V++ + + P + Q P V
Sbjct: 436 ---------PSSTCPPAAS----VVQPLSTAPHPCI---HLSSASQASSQVPHTQRVVNI 479
Query: 178 GRQTGGYNKYPVRNPGTQPQAQIG-GIQPAAAGVQ--AVHVQGQEPLTSTMLAAAQPQEQ 234
G QT G PG A G +A GVQ V+V G +PLT +ML AA EQ
Sbjct: 480 GTQTTGPGGEGSCIPGQPLLAHRGSSAVHSAHGVQESTVYVPGHQPLTVSMLDAAPLHEQ 539
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
KQM+GERL+ LI L GKITGMLLE+DN ELL +LE ESL +K+EEAVAVL+AH+
Sbjct: 540 KQMIGERLYSLIHDACAPLTGKITGMLLEMDNLELLLLLESPESLHAKIEEAVAVLKAHR 599
Query: 295 AKQAA 299
A ++A
Sbjct: 600 AMESA 604
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+S+GFGF+ F EEA KAV MNG+ + + LYV AQ++ +R+ L ++ Q
Sbjct: 227 NGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQ 282
Score = 43.9 bits (102), Expect = 0.10, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 32/50 (64%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
S+GFGFV F + E A KA+ MNG ++ + ++V + ++ R+A L ++
Sbjct: 137 SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
>gi|56758360|gb|AAW27320.1| SJCHGC06322 protein [Schistosoma japonicum]
Length = 721
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 136/368 (36%), Positives = 175/368 (47%), Gaps = 73/368 (19%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+ RSKGFGFVCF++PE+A +AVT+MNG IIGSKPLYVALAQRKEDR+A L ++ QR+A
Sbjct: 332 NNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRLAQ 391
Query: 64 MRMQQMGQL-FQPGSTG--GYFVPTLPQPQRFYGPTQMTQIRPQPRW----------AAA 110
R + PG YF P Q QRFY P+ + QPRW A
Sbjct: 392 YRAPVASMIPAVPGHAAPHNYFPPAF-QAQRFYHPSSAV-LSSQPRWNRAAGIPAQIGAI 449
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGAN-------MSARPITGQ----STMG 159
P P G PN + A+ Q G N MS+ P T +
Sbjct: 450 PNRPPVAGYYPGAPNPAAITANQMAAFAQLRTPGVNRPMMPNGMSSMPTTPHLQTAAVFN 509
Query: 160 PRGGGPMQAPGPASV---SAAGRQTGGYNKYPV----------RNPGTQPQAQ------- 199
QA G V G TGG N+ P NP +PQ
Sbjct: 510 QAANQQRQATGRQGVVVPQVLGATTGGLNQRPTAASVVAGPPSANPTMRPQVASQVPRAV 569
Query: 200 ----IGGIQPAAAGVQ----AVHVQGQEPL-----TSTML------------AAAQPQE- 233
+ I A V+ A +V Q L TST+L A AQ E
Sbjct: 570 MHSGMPNITNATTNVRFHQTARNVSAQPTLVPTGNTSTLLSPLGDQGQLTISALAQLSEV 629
Query: 234 -QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
QK+ LGE LFP IQ MYP LA K+TGMLL +DNAE++ +LE ++ L++K EE ++VL++
Sbjct: 630 DQKRALGEHLFPRIQTMYPTLARKLTGMLLGVDNAEVINLLESDDLLRAKCEEGISVLES 689
Query: 293 HQAKQAAV 300
Q +Q +
Sbjct: 690 SQNQQNDI 697
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/52 (50%), Positives = 35/52 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
+G+SKGFGFVC+ P+ A AV M+G+ I + LY A AQRKE+R+ L
Sbjct: 226 DNEGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEEL 277
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
M E+G+SKG+GFV F E A +A+ ++N II + +YV K +RK+
Sbjct: 134 MDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKS 184
>gi|301120388|ref|XP_002907921.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
gi|262102952|gb|EEY61004.1| polyadenylate-binding protein 1-B [Phytophthora infestans T30-4]
Length = 640
Score = 166 bits (420), Expect = 1e-38, Method: Compositional matrix adjust.
Identities = 131/304 (43%), Positives = 164/304 (53%), Gaps = 45/304 (14%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G S+GFGFVCFS+PEEA KAV EMNG++I KP+YVALAQRKE R+A L +Q+ Q+ A
Sbjct: 368 NGNSRGFGFVCFSTPEEANKAVAEMNGKLISGKPVYVALAQRKEVRRAQLEAQHAQQRAG 427
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGF 123
M + + + QP P FYG Q Q+ PQ R QGF
Sbjct: 428 MVVGRGMPMGQP--------PMYGAAPMFYG--QPGQLPPQAR--------------QGF 463
Query: 124 PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSA------- 176
PQ + PR + GA + P G M P G PMQ
Sbjct: 464 -MYPQ-QMMPRGVQRGPMPYGARVPGAPAPGGYPM-PGYGMPMQQQRGQPRRGRQGPGPQ 520
Query: 177 ------AGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
A R+ Y +P Q G+ P AA VQ G EPLTS LAAA
Sbjct: 521 GPQGAPANRRNFKYTANARNHPARDVPPQ--GVMPPAAPVQNA---GPEPLTSAALAAAS 575
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P+ QK M+GERL+PLI R PELAGKITGMLLE+DN ELL++LE E+L++K++EA+ VL
Sbjct: 576 PEIQKNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKIQEAMTVL 635
Query: 291 QAHQ 294
+AHQ
Sbjct: 636 EAHQ 639
>gi|403169797|ref|XP_003889581.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
gi|375168424|gb|EHS63645.1| hypothetical protein, variant [Puccinia graminis f. sp. tritici CRL
75-36-700-3]
Length = 715
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 134/317 (42%), Positives = 166/317 (52%), Gaps = 27/317 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFSSP+EATKAV EMNG+++GSKPLYV+LAQRKE RK L +Q QR
Sbjct: 402 DEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRKQQLEAQMSQR- 460
Query: 62 ANMRMQQMGQLFQPGSTGG------YFVPTLPQPQR-----FYGPTQM-TQIRPQPRWAA 109
+ MR QQ+ PG+ G YF P Y P M + P+PR+A
Sbjct: 461 SQMRSQQIAAAGIPGAPYGAPPNPMYFGGAAAYPPHGGRGMMYPPNGMPAGMPPRPRYAP 520
Query: 110 APQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGP-----RGGG 164
QM P G G P P + P G V M P GP RGG
Sbjct: 521 PGQMAPMGMPG-GAPYPPHPQDYPGYPVGGPVPPVGGMRGIPGPPAHLGGPNPPNFRGGN 579
Query: 165 PMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVH-VQGQEP--L 221
P P + + T G P G PQ++ G + +G H V P L
Sbjct: 580 GAPIP-PMNGRGSAPSTNG----PGSMRGAPPQSRDGYAPSSLSGRAVSHRVSDIAPVGL 634
Query: 222 TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
+ LA A P EQKQMLGE L+P I PE AGKITGM+LEI+NAEL+++LE+ +L +
Sbjct: 635 SPAALAKASPAEQKQMLGEALYPQIAEKQPEKAGKITGMILEIENAELIHLLENRPALDA 694
Query: 282 KVEEAVAVLQAHQAKQA 298
KV+EAV VL ++ K A
Sbjct: 695 KVQEAVQVLDEYERKDA 711
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+ +GFGFV + + E A+KAV ++ + LYVA AQ++ +R A L + Q+
Sbjct: 299 DEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQK 358
Query: 62 ANMRMQQMG 70
++ G
Sbjct: 359 YETTLKYQG 367
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV + + E A A+ +NG + K ++V + + DR+A + + +
Sbjct: 206 DEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKI-DEVRSQF 264
Query: 62 ANMRMQQM 69
N+ ++ +
Sbjct: 265 TNLYIKNL 272
>gi|403169799|ref|XP_003329214.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
gi|375168425|gb|EFP84795.2| hypothetical protein PGTG_10266 [Puccinia graminis f. sp. tritici
CRL 75-36-700-3]
Length = 804
Score = 166 bits (419), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 135/321 (42%), Positives = 166/321 (51%), Gaps = 35/321 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFSSP+EATKAV EMNG+++GSKPLYV+LAQRKE RK L +Q QR
Sbjct: 491 DEKGTSKGFGFVCFSSPDEATKAVAEMNGKMLGSKPLYVSLAQRKEVRKQQLEAQMSQR- 549
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRF---------------YGPTQM-TQIRPQP 105
+ MR QQ+ PG+ G P P F Y P M + P+P
Sbjct: 550 SQMRSQQIAAAGIPGAPYG----APPNPMYFGGAAAYPPHGGRGMMYPPNGMPAGMPPRP 605
Query: 106 RWAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGP----- 160
R+A QM P G G P P + P G V M P GP
Sbjct: 606 RYAPPGQMAPMGMPG-GAPYPPHPQDYPGYPVGGPVPPVGGMRGIPGPPAHLGGPNPPNF 664
Query: 161 RGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVH-VQGQE 219
RGG AP P GR + P G PQ++ G + +G H V
Sbjct: 665 RGGN--GAPIPP---MNGRGSAPSTNGPGSMRGAPPQSRDGYAPSSLSGRAVSHRVSDIA 719
Query: 220 P--LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
P L+ LA A P EQKQMLGE L+P I PE AGKITGM+LEI+NAEL+++LE+
Sbjct: 720 PVGLSPAALAKASPAEQKQMLGEALYPQIAEKQPEKAGKITGMILEIENAELIHLLENRP 779
Query: 278 SLKSKVEEAVAVLQAHQAKQA 298
+L +KV+EAV VL ++ K A
Sbjct: 780 ALDAKVQEAVQVLDEYERKDA 800
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+ +GFGFV + + E A+KAV ++ + LYVA AQ++ +R A L + Q+
Sbjct: 388 DEHGKHRGFGFVNYENHESASKAVDALHDKDYKGNVLYVARAQKRTERDAELKKAHEQQK 447
Query: 62 ANMRMQQMG 70
++ G
Sbjct: 448 YETTLKYQG 456
Score = 39.7 bits (91), Expect = 1.9, Method: Compositional matrix adjust.
Identities = 19/68 (27%), Positives = 37/68 (54%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV + + E A A+ +NG + K ++V + + DR+A + + +
Sbjct: 295 DEHGASKGYGFVHYVTGESAEAAIKGVNGMQLNDKVVFVGIHVPRRDRQAKI-DEVRSQF 353
Query: 62 ANMRMQQM 69
N+ ++ +
Sbjct: 354 TNLYIKNL 361
>gi|56462172|gb|AAV91369.1| hypothetical protein [Lonomia obliqua]
Length = 162
Score = 165 bits (417), Expect = 3e-38, Method: Compositional matrix adjust.
Identities = 97/159 (61%), Positives = 112/159 (70%), Gaps = 20/159 (12%)
Query: 146 NMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNP-GTQPQAQIGGIQ 204
++ ARPITGQ +G ++AP V+ + R G +RNP QP
Sbjct: 23 SLGARPITGQQGVGA-AAASIRAP---LVTQSSRPAGYKYTSNMRNPPAPQP-------- 70
Query: 205 PAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEI 264
AVH+QGQEPLT+TMLAAA QEQKQMLGERLFPLIQRM+P+LAGKITGMLLEI
Sbjct: 71 -------AVHIQGQEPLTATMLAAAPHQEQKQMLGERLFPLIQRMHPDLAGKITGMLLEI 123
Query: 265 DNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKKE 303
DN ELL+MLEH ESLK+KV+EAVAVLQAHQAKQ A KKE
Sbjct: 124 DNPELLHMLEHGESLKAKVDEAVAVLQAHQAKQQATKKE 162
>gi|334362261|gb|AEG78330.1| poly A binding protein, cytoplasmic 1 b [Epinephelus coioides]
gi|354832343|gb|AER42661.1| poly A binding protein, cytoplasmic 1 b [Epinephelus coioides]
Length = 216
Score = 164 bits (414), Expect = 5e-38, Method: Compositional matrix adjust.
Identities = 118/212 (55%), Positives = 133/212 (62%), Gaps = 24/212 (11%)
Query: 97 QMTQIRPQPRWAAAPQMRPSGQTAQGFPNIP--QFRSAPRASTGQTVIRGANMSARPITG 154
QM Q+RP PRWA G Q F N+P SAPR T +R A+ R ++
Sbjct: 11 QMAQLRPSPRWAT------QGVRPQHFQNMPGAMRPSAPRPQTF-GAMRPASQVPRMMSA 63
Query: 155 Q---STMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQ--PQAQIGGIQPAAAG 209
Q TMGPR P A AS G Y VRNP Q Q+ QPA
Sbjct: 64 QRVAQTMGPR---PATAAAAASAPVRGVPQYKYAAG-VRNPQQHMPAQPQVPMQQPA--- 116
Query: 210 VQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAEL 269
VHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+EL
Sbjct: 117 ---VHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSEL 173
Query: 270 LYMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
L+MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 174 LHMLESPESLRSKVDEAVAVLQAHQAKEAAQK 205
>gi|58271356|ref|XP_572834.1| polyadenylate-binding protein [Cryptococcus neoformans var.
neoformans JEC21]
gi|134114714|ref|XP_774065.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|338819167|sp|P0CP47.1|PABP_CRYNB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|338819168|sp|P0CP46.1|PABP_CRYNJ RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|50256695|gb|EAL19418.1| hypothetical protein CNBH1100 [Cryptococcus neoformans var.
neoformans B-3501A]
gi|57229093|gb|AAW45527.1| polyadenylate-binding protein, putative [Cryptococcus neoformans
var. neoformans JEC21]
Length = 673
Score = 163 bits (412), Expect = 9e-38, Method: Compositional matrix adjust.
Identities = 135/301 (44%), Positives = 165/301 (54%), Gaps = 35/301 (11%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G S+GFGFVC+SSP+EATKAV+EMNG++IG+KPLYVALAQRK+ R+ L SQ QR
Sbjct: 364 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQR- 422
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAA-APQMRPSGQTA 120
A RMQ G F PG G + QP Y P P + P M P
Sbjct: 423 AQQRMQ-YGAGF-PGMQG-----YMGQPMYGY--------PPMPGYGQPMPGMPPVRGPM 467
Query: 121 QGFPNIPQ--FRSAPRAS-TGQTVIRGANMSARPITGQSTMGPRGGGPMQ--APG----P 171
G+P PQ +S PR + GQ + G P G P G P PG P
Sbjct: 468 MGYPGAPQNMMQSRPRFNPNGQPLPGGV-----PAYGMPPQVPYPGAPGYPVRPGGARIP 522
Query: 172 ASVSAAGRQTGGYNKYPVRNPGTQPQAQI--GGIQPAAAGVQAVHVQGQEPLTSTMLAAA 229
A+ +A G + GG + PV P P I GG PA QA L + LA A
Sbjct: 523 AAPNANGPRNGGPS--PVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARA 580
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
P EQKQMLGE L+PLI PELAGKITGMLLE+DNAELL+++E +L+ KV+EA+ V
Sbjct: 581 APAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRV 640
Query: 290 L 290
L
Sbjct: 641 L 641
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
E G SKGFGFV + + E A KAV E+N + + K LY AQ K +R+A L + ++
Sbjct: 261 DEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEK 319
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G+S+GF FV +S+ E A A+ +NG ++ K +YV K++R +A
Sbjct: 168 DENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFT 227
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 228 NVYIKNV 234
>gi|405122394|gb|AFR97161.1| polyadenylate-binding protein [Cryptococcus neoformans var. grubii
H99]
Length = 670
Score = 162 bits (411), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 132/307 (42%), Positives = 161/307 (52%), Gaps = 47/307 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G S+GFGFVC+SSP+EATKAV+EMNG++IG+KPLYVALAQRK+ R+ L SQ QR
Sbjct: 366 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQR- 424
Query: 62 ANMRMQQ----------MGQL---FQPGSTGGYFVPTLP---QPQRFY--GPTQMTQIRP 103
A RMQ MGQ + P G +P +P P Y P M Q RP
Sbjct: 425 AQQRMQYGTGFPGMQGYMGQPMYGYPPMPGYGQPMPGMPPVRGPMMGYPGAPQNMMQSRP 484
Query: 104 QPRWAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGG 163
R+ Q P G A G P + AP G V G AR + GPR G
Sbjct: 485 --RFNPNGQPLPGGVPAYGMPPQVPYPGAP----GYPVRPGG---ARIPAAPNANGPRNG 535
Query: 164 GPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTS 223
GP P + A G+ P+ GG PA QA L +
Sbjct: 536 GPSPVGAPQGLPA----------------GSMPR---GGQMPARPHEQAAPAPQAGRLDA 576
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
LA A P EQKQMLGE L+PLI PELAGKITGMLLE+DNAELL+++E +L+ KV
Sbjct: 577 QSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKV 636
Query: 284 EEAVAVL 290
+EA+ VL
Sbjct: 637 DEALRVL 643
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 34/59 (57%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
E G SKGFGFV + E A KAV E+N + + K LY AQ K +R+A L + ++
Sbjct: 263 DEKGVSKGFGFVNYEHHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEK 321
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G+S+GF FV +S+ E A A+ +NG ++ K +YV K++R +A
Sbjct: 170 DENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFT 229
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 230 NVYIKNV 236
>gi|321261800|ref|XP_003195619.1| polyadenylate-binding protein [Cryptococcus gattii WM276]
gi|317462093|gb|ADV23832.1| polyadenylate-binding protein, putative [Cryptococcus gattii WM276]
Length = 675
Score = 162 bits (410), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 135/301 (44%), Positives = 165/301 (54%), Gaps = 35/301 (11%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G S+GFGFVC+SSP+EATKAV+EMNG++IG+KPLYVALAQRK+ R+ L SQ QR
Sbjct: 366 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQR- 424
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAA-APQMRPSGQTA 120
A RMQ G F PG G + QP Y P P + P M P
Sbjct: 425 AQQRMQ-YGAGF-PGMQG-----YMGQPMYGY--------PPMPGYGQPMPGMPPVRGPM 469
Query: 121 QGFPNIPQ--FRSAPRAS-TGQTVIRGANMSARPITGQSTMGPRGGGPMQ--APG----P 171
G+P PQ +S PR + GQ + G P G P G P PG P
Sbjct: 470 MGYPGAPQNMMQSRPRFNPNGQPLPGGV-----PAYGMPPQVPYPGAPGYPVRPGGARIP 524
Query: 172 ASVSAAGRQTGGYNKYPVRNPGTQPQAQI--GGIQPAAAGVQAVHVQGQEPLTSTMLAAA 229
A+ +A G + GG + PV P P I GG PA QA L + LA A
Sbjct: 525 AAPNANGPRNGGPS--PVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARA 582
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
P EQKQMLGE L+PLI PELAGKITGMLLE+DNAELL+++E +L+ KV+EA+ V
Sbjct: 583 APAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRV 642
Query: 290 L 290
L
Sbjct: 643 L 643
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/63 (46%), Positives = 37/63 (58%), Gaps = 1/63 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL-ASQYMQR 60
E G SKGFGFV + + E A +AV E+N + I K LY AQ K +R+A L S +R
Sbjct: 263 DEQGVSKGFGFVNYENHESAKQAVDELNEKEINGKKLYAGRAQTKSEREAELKKSHEEKR 322
Query: 61 IAN 63
I N
Sbjct: 323 IEN 325
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G+S+GF FV +S+ E A A+ +NG ++ K +YV K++R +A
Sbjct: 170 DENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFT 229
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 230 NVYIKNV 236
>gi|405968213|gb|EKC33305.1| Embryonic polyadenylate-binding protein B [Crassostrea gigas]
Length = 187
Score = 160 bits (406), Expect = 5e-37, Method: Compositional matrix adjust.
Identities = 106/187 (56%), Positives = 124/187 (66%), Gaps = 15/187 (8%)
Query: 123 FPNIPQFRSAPRASTGQTVIRGANMSARPITGQS---------TMGPRGGGPMQAPGPAS 173
P PQ R + TGQT +R A +SARPITGQS + + GG Q P
Sbjct: 1 MPGAPQIRQ--QRPTGQTNVR-AGVSARPITGQSGTPNAQQRMPVNQQVGGRPQGGQPTV 57
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQE 233
+AA RQ G Y Y Q Q G+Q A QAV VQGQ+PLT+TMLA A PQE
Sbjct: 58 PAAANRQQG-YKSYGGGQMMKQQPGQTPGMQQAPP--QAVIVQGQDPLTATMLATAPPQE 114
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQMLGERLFPLI M+P+LAGKITGMLLEIDN+ELL+MLE ESL++KV+EAVAVLQAH
Sbjct: 115 QKQMLGERLFPLISTMFPDLAGKITGMLLEIDNSELLHMLESQESLEAKVKEAVAVLQAH 174
Query: 294 QAKQAAV 300
QAK++A
Sbjct: 175 QAKESAT 181
>gi|380793569|gb|AFE68660.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 485
Score = 160 bits (405), Expect = 6e-37, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 89/113 (78%), Gaps = 7/113 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMR---MQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRW 107
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRW 437
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|344236474|gb|EGV92577.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 524
Score = 160 bits (404), Expect = 8e-37, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 89/113 (78%), Gaps = 7/113 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 317 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 376
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRW 107
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 377 VAGMRALPANAILSQFQP-AAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRW 428
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 219 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKAIFVGRAQKKVERQAELKRKFEQ 273
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 122 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 180
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 181 FTNVYIKNFGE 191
>gi|336364894|gb|EGN93247.1| hypothetical protein SERLA73DRAFT_172163 [Serpula lacrymans var.
lacrymans S7.3]
Length = 684
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 133/327 (40%), Positives = 165/327 (50%), Gaps = 52/327 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ SKGFGFVCFSSP+EATKAV EMN ++IGSKPLYV+LAQR+E R+ L SQ QR
Sbjct: 362 DDKSTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQR- 420
Query: 62 ANMRMQQMGQLFQPGS--TGGYFVP-----TLPQPQRFYGPTQMTQIRPQPRWAAAPQMR 114
+RMQQ PG G + P PQ + G Q + P+PR+ A
Sbjct: 421 NQIRMQQAAAAGIPGGYINGPMYYPPGPGSFPPQGRNMMGYGQPGMLPPRPRYPAG---- 476
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPIT---GQSTMGPRGGGPMQAPGP 171
+GQ G P IP + P++ G P+ G S P P +A P
Sbjct: 477 -NGQVPGGMP-IPPYGQPPQSYGGMPGYPRGGAPRPPVARGPGSSPTNPNAPIP-RANAP 533
Query: 172 ASVSAAGRQTG-------------------------GYNKYP-VRNPGTQPQAQIGGIQP 205
SV+ A + G GY P RN G P +G P
Sbjct: 534 PSVNGAAARGGAPQGSVPPNRPPPAGAPAPGNRPPQGYKLNPQTRNAGAPP---VGQTSP 590
Query: 206 AAAGVQAVHVQGQEP-LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEI 264
A QA Q + P LT+ LA A P EQKQMLGE ++ I PELAGKITGMLLE+
Sbjct: 591 A----QAPATQSEVPTLTAGALANASPMEQKQMLGEVIYMKIAPAQPELAGKITGMLLEM 646
Query: 265 DNAELLYMLEHNESLKSKVEEAVAVLQ 291
DNAELL++LE +S+ KV EA+AVL
Sbjct: 647 DNAELLHLLESPDSMAGKVNEALAVLH 673
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ E+G SKGFGFV + EEA AV ++ I K L+V+ AQ+K +R+ L Y Q
Sbjct: 258 VDEEGNSKGFGFVNYEHHEEAQSAVDALHDTDIRGKKLFVSRAQKKAEREEELRRSYEQ 316
Score = 45.1 bits (105), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E GRSKG+GFV + + E A A+ +NG ++ K +YV +++R++ L Q
Sbjct: 166 DEHGRSKGYGFVHYETGEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKLDEMKAQ-F 224
Query: 62 ANMRMQQM 69
N+ ++ +
Sbjct: 225 TNLYIKNL 232
>gi|426200105|gb|EKV50029.1| hypothetical protein AGABI2DRAFT_190442 [Agaricus bisporus var.
bisporus H97]
Length = 673
Score = 160 bits (404), Expect = 9e-37, Method: Compositional matrix adjust.
Identities = 136/335 (40%), Positives = 161/335 (48%), Gaps = 63/335 (18%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFSSP+EATKAV EMN ++IG+KPLYV+LAQR+E R+ L SQ QR
Sbjct: 360 DEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQR- 418
Query: 62 ANMRMQQMGQLFQPG--------------------STGGYFVPTLPQPQRFYGPTQMTQI 101
+RMQQ PG GY P + P+ Y Q+ +
Sbjct: 419 NQIRMQQAAAAGVPGGYINGPMYYPPGPGFPPQGRGMMGYGQPGMMPPRIRYPNGQVPSM 478
Query: 102 RPQPRWAAAPQMRPSGQTAQ--GFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMG 159
P P P GQ Q G P P PR + V RG S T S
Sbjct: 479 PPVPG--------PYGQGPQPYGMPGYP-----PRGAPRPPVARGPGSSP---THPSVPM 522
Query: 160 PRGGGPMQAPGPASVSAAGRQTG-----------------GYNKYPVRNPGTQPQAQIGG 202
PR GP G A + G TG YNK P +PQ
Sbjct: 523 PRANGPAPNGGAARPAPQGAPTGSRAPPPGAPAPGRAPQPAYNK-----PQARPQGAPVT 577
Query: 203 IQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLL 262
QPAA V A G LT+ LAAA P EQKQMLGE ++ I PELAGKITGMLL
Sbjct: 578 AQPAA--VPAPQQSGLPNLTADQLAAASPMEQKQMLGEVIYMRIVPSQPELAGKITGMLL 635
Query: 263 EIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQ 297
E+DN ELL +L+ E++ +KV+EA VLQ K
Sbjct: 636 EMDNNELLALLDSEEAMNAKVQEANTVLQEFTTKD 670
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+G+SKGFGFV + EEA +AV E++ + K L+VA AQ+K +R+ L Y Q
Sbjct: 257 DEEGKSKGFGFVNYERHEEAQRAVDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQ 314
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E GRSKG+GFV + + E A A+ +NG ++ K +YV +++R++ L Q
Sbjct: 164 DEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKAQ-F 222
Query: 62 ANMRMQQM 69
N+ ++ +
Sbjct: 223 TNLYIKNL 230
>gi|256075089|ref|XP_002573853.1| polyadenylate binding protein [Schistosoma mansoni]
gi|360044950|emb|CCD82498.1| putative polyadenylate binding protein [Schistosoma mansoni]
Length = 688
Score = 160 bits (404), Expect = 1e-36, Method: Compositional matrix adjust.
Identities = 124/355 (34%), Positives = 166/355 (46%), Gaps = 80/355 (22%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+ RSKGFGFVCF++PE+A +AVT+MNG IIGSKPLYVALAQRKEDR+A L ++ QR+A
Sbjct: 332 NNRSKGFGFVCFANPEQAARAVTDMNGTIIGSKPLYVALAQRKEDRRAKLIEEHQQRMAQ 391
Query: 64 MRMQQMGQL-FQPGSTG--GYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQM------- 113
R + PG +F P Q QRFY P+ + QPRW A +
Sbjct: 392 YRNPVASMIPAVPGHAAPHSFFPPAFQQTQRFYHPSGAV-LSSQPRWNRAAGIPAQIGGL 450
Query: 114 --------------RPSGQTAQGFPNIPQFRS----APRASTGQTVIRGANMSARPITGQ 155
P+ TA + QFR+ P G + I ++ + Q
Sbjct: 451 PNRPPVAGYYPSAPNPAAITANQMASFAQFRTPGVNRPMVPNGMSSIPSTHLQTAAVFNQ 510
Query: 156 S------------------TMGPRGGGPMQAP-------GPASVSAAGRQ---------- 180
+ +G GG Q P GP SV+ A RQ
Sbjct: 511 TANQQRQQASGRQGVVVPQVLGATAGGLNQRPTAASVVAGPPSVNPAMRQQVASQVPRAV 570
Query: 181 --TGGYN----------KYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
+G N RN QP G + +Q + QGQ LT + LA
Sbjct: 571 MHSGMSNITSTATNVRFHQTARNVSAQPTLVPAG--SMSTLLQPLGDQGQ--LTISALAQ 626
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
++QK+ LGE L+P I+ MYP LA K+TGMLL +DNAE++ +LE E L++KV
Sbjct: 627 LSEEDQKRTLGEHLYPRIKAMYPNLANKLTGMLLGVDNAEVINLLESEELLRAKV 681
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
+G+SKGFGFVCF P+ A AV M+G+ I + LY A AQRKE+R+ L
Sbjct: 226 DSEGKSKGFGFVCFLDPDHAENAVKTMHGKEIEGRALYCARAQRKEERQEEL 277
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
M E+G+SKG+GFV F E A +A+ ++N II + +YV K +RK+
Sbjct: 134 MDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKS 184
>gi|119627672|gb|EAX07267.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_g [Homo sapiens]
Length = 338
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 89/113 (78%), Gaps = 7/113 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 131 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 190
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRW 107
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 191 VAGMRALPANAILNQFQP-AAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRW 242
>gi|78070599|gb|AAI06909.1| PABPC4 protein [Homo sapiens]
Length = 281
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 89/113 (78%), Gaps = 7/113 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 76 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 135
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRW 107
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 136 VAGMRALPANAILNQFQP-AAGGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRW 187
>gi|110002613|gb|AAI18569.1| PABPC4 protein [Homo sapiens]
Length = 252
Score = 159 bits (401), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 79/113 (69%), Positives = 89/113 (78%), Gaps = 7/113 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 76 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 135
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRW 107
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 136 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRW 187
>gi|409082274|gb|EKM82632.1| hypothetical protein AGABI1DRAFT_111221 [Agaricus bisporus var.
burnettii JB137-S8]
Length = 671
Score = 157 bits (396), Expect = 8e-36, Method: Compositional matrix adjust.
Identities = 134/335 (40%), Positives = 160/335 (47%), Gaps = 65/335 (19%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFSSP+EATKAV EMN ++IG+KPLYV+LAQR+E R+ L SQ QR
Sbjct: 360 DEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQR- 418
Query: 62 ANMRMQQMGQLFQPG--------------------STGGYFVPTLPQPQRFYGPTQMTQI 101
+RMQQ PG GY P + P+ Y Q+ +
Sbjct: 419 NQIRMQQAAAAGVPGGYINGPMYYPPGPGFPPQGRGMMGYGQPGMMPPRIRYPNGQVPSM 478
Query: 102 RPQPRWAAAPQMRPSGQTAQ--GFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMG 159
P P P GQ Q G P P PR + V RG S T S
Sbjct: 479 PPVPG--------PYGQGPQPYGMPGYP-----PRGAPRPPVARGPGSSP---THPSVPM 522
Query: 160 PRGGGPMQAPGPASVSAAGRQTG-----------------GYNKYPVRNPGTQPQAQIGG 202
PR GP G A + G G YNK P +PQ
Sbjct: 523 PRANGPAPNGGAARPAPQGAPAGSRAPPPGAPAPGRAPQPAYNK-----PQARPQGAPVT 577
Query: 203 IQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLL 262
QPAAA Q+ LT+ LAAA P EQKQMLGE ++ I PELAGKITGMLL
Sbjct: 578 AQPAAAPQQSSLPN----LTADQLAAASPMEQKQMLGEVIYMRIVPSQPELAGKITGMLL 633
Query: 263 EIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQ 297
E+DN ELL +L+ E++ +KV+EA VLQ K
Sbjct: 634 EMDNNELLALLDSEEAMNAKVQEANTVLQEFTTKD 668
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+G+SKGFGFV + EEA +AV E++ + K L+VA AQ+K +R+ L Y Q
Sbjct: 257 DEEGKSKGFGFVNYERHEEAQRAVDELHDTDLKGKKLFVARAQKKAEREDELRRSYEQ 314
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E GRSKG+GFV + + E A A+ +NG ++ K +YV +++R++ L Q
Sbjct: 164 DEHGRSKGYGFVHYETAEAADNAIKSVNGMLLNDKKVYVGHHISRKERQSKLDEMKAQ-F 222
Query: 62 ANMRMQQM 69
N+ ++ +
Sbjct: 223 TNLYIKNL 230
>gi|328773103|gb|EGF83140.1| hypothetical protein BATDEDRAFT_34010 [Batrachochytrium
dendrobatidis JAM81]
Length = 718
Score = 154 bits (390), Expect = 4e-35, Method: Compositional matrix adjust.
Identities = 129/340 (37%), Positives = 166/340 (48%), Gaps = 49/340 (14%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G SKGFGFVCFS+P+EATKAVTEMN R++ +KP+YVALAQRKE R+ LA+Q QR M
Sbjct: 386 GISKGFGFVCFSNPDEATKAVTEMNNRMLANKPIYVALAQRKEVRRQQLAAQMQQRA--M 443
Query: 65 RMQQMGQLFQPGSTGG-YFVP---TLPQPQRFYGP-TQMTQIRPQPRWAA---APQMRPS 116
R Q Q+ PG G F P PQ + ++ P Q+ +PRW P M+
Sbjct: 444 RAHQ--QMMPPGYPGASIFYPPGGVPPQARGYFNPQQAQQQMMARPRWTGPGQPPHMQQP 501
Query: 117 GQTAQGFP-----------------------NIPQFRSAPRASTGQTVIR-GANM----- 147
G Q P P ++ P GQ + G M
Sbjct: 502 GFPPQQMPPHMQQPGFPPQQQPYAIVPATPGARPPRQTRPAGGRGQAIHHQGMQMPMIQQ 561
Query: 148 -SARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRN--PGTQPQAQIGGIQ 204
ARP+ G G GG M PA+V+A GR G VRN G
Sbjct: 562 PGARPLAGYGQPGAAAGGVM----PANVAARGRGAGFKYAPNVRNAPATGGAADAAGSAT 617
Query: 205 PAAAGVQAVHVQGQEPLTSTMLAAAQPQE-QKQMLGERLFPLIQRMYPELAGKITGMLLE 263
P+ + A+ PQ+ QK+ LGE LFPL+ P+LAGKITGMLLE
Sbjct: 618 ATGGAATPAPAAAGRPVLNAATLASMPQDQQKRALGEVLFPLVHAQSPQLAGKITGMLLE 677
Query: 264 IDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKKE 303
+DN ELL++LE E+L SKV EA+ L+ H + AA ++
Sbjct: 678 MDNGELLHLLESPETLASKVSEAMIALEEHMREAAATTED 717
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/57 (45%), Positives = 38/57 (66%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ E+G SK FGFV + + E+A +AV EM+ + IG K +YV AQ+K +R+ L QY
Sbjct: 278 VDEEGNSKEFGFVNYENHEDARRAVEEMHEKEIGGKQIYVGRAQKKFEREEELRRQY 334
>gi|343961101|dbj|BAK62140.1| polyadenylate-binding protein 4 [Pan troglodytes]
Length = 267
Score = 154 bits (389), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 112/244 (45%), Positives = 131/244 (53%), Gaps = 47/244 (19%)
Query: 92 FYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGFPNIPQF--RSAPRASTGQTVIRGANMSA 149
+Y P Q+ Q+RP PRW G QGF +P +S PR + G ++
Sbjct: 29 YYTPNQLVQMRPNPRWQ-------QGGRPQGFQGMPSAIRQSGPRPTLRHLAPTGNAPAS 81
Query: 150 R--PITGQST---------MGPRGGGPMQAPGPASVSAAGRQTGGYN------------- 185
R P T Q M G G Q S + G T N
Sbjct: 82 RGLPTTTQRVGSECPDRLAMDFGGAGAAQQGLTDSCQSGGVLTAVQNLAPRAAVAAAAPR 141
Query: 186 -----KY--PVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQML 238
KY VR+P IQP A AVHVQGQEPLT++MLAAA PQEQKQML
Sbjct: 142 AVAPYKYASSVRSPHP-------AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQML 194
Query: 239 GERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQA 298
GERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+
Sbjct: 195 GERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKE 254
Query: 299 AVKK 302
A +K
Sbjct: 255 AAQK 258
>gi|343459033|gb|AEM37675.1| molicular identification of Poly A binding protein [Epinephelus
bruneus]
Length = 179
Score = 153 bits (386), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 86/117 (73%), Positives = 95/117 (81%), Gaps = 12/117 (10%)
Query: 189 VRNPG----TQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFP 244
VRNP TQPQ + QPA VHVQGQEPLT++MLAAA PQEQKQMLGERLFP
Sbjct: 60 VRNPQQHMPTQPQVPMQ--QPA------VHVQGQEPLTASMLAAAPPQEQKQMLGERLFP 111
Query: 245 LIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
LIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 112 LIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQK 168
>gi|395333502|gb|EJF65879.1| polyadenylate binding protein [Dichomitus squalens LYAD-421 SS1]
Length = 664
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 127/312 (40%), Positives = 160/312 (51%), Gaps = 43/312 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFSSP+EATKAV EMN ++IGSKPLYV+LAQR+E R+ L SQ QR
Sbjct: 366 DEKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQR- 424
Query: 62 ANMRMQQMGQLFQPGSTGGYF-----------VPTLPQPQRFYGPTQMTQIRPQPRWAAA 110
+RMQQ G GGY P + G Q + P+PR+A
Sbjct: 425 NQIRMQQAA---AAGIPGGYLNGPMYYPPGPGAYPPPGGRGMMGYGQPGMLPPRPRYAPN 481
Query: 111 PQM-------RPSGQT-AQGFPNIPQF-RSAPRASTGQTVIRGANMSARPITGQSTMGPR 161
Q+ P GQ Q + IP + R+ A+ ++ P+ G PR
Sbjct: 482 NQVPAGIPIPAPYGQAPPQAYGGIPGYPRAPRGPPPAGRGGPPADPNSPPVNG----APR 537
Query: 162 GGGPMQAPGPASVSAAGRQTGGYNKYPVRNP-GTQPQAQIGGIQPAAAGVQAVHVQGQEP 220
G P A AA R G R P +PQA+ A G+ P
Sbjct: 538 GNAPQGA-------AANRPPAGGQPPAARAPTANRPQAR------QAPPAAVAAPTGEVP 584
Query: 221 -LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
+T+ LA A P EQKQMLGE ++ I PELAGKITGMLLE+DN ELL++LE +++
Sbjct: 585 TITAAALANASPMEQKQMLGEVIYMKIAPSQPELAGKITGMLLEMDNTELLHLLESPDAM 644
Query: 280 KSKVEEAVAVLQ 291
SKV EA+AVL
Sbjct: 645 NSKVNEALAVLH 656
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
E G+S+GFGFV F + EEA KAV ++ + L+V+ AQ+K +R+ L Y Q +
Sbjct: 263 DEQGQSRGFGFVNFETHEEAQKAVETLHDSEYHGRKLFVSRAQKKAEREEELRKSYEQAK 322
Query: 61 IANMRMQQMGQLF 73
+ M Q L+
Sbjct: 323 VEKMSKYQGVNLY 335
Score = 42.0 bits (97), Expect = 0.32, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 25/39 (64%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYV 40
E GRSKG+GFV + + E A A+ +NG ++ K +YV
Sbjct: 166 DEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYV 204
>gi|324501709|gb|ADY40758.1| Polyadenylate-binding protein 1 [Ascaris suum]
Length = 595
Score = 152 bits (383), Expect = 2e-34, Method: Compositional matrix adjust.
Identities = 112/287 (39%), Positives = 151/287 (52%), Gaps = 40/287 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
S+DGRSKGFGFVCF P+EA KA+T M G+++ +KPLYV++AQRKEDRKA +ASQYMQRI
Sbjct: 336 SDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQRKEDRKAFIASQYMQRI 395
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP-TLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
A++RMQ F G T Y T+ QP F + T R A M P +
Sbjct: 396 ASIRMQATS--FGSGMT--YMSDSTVVQPL-FACYGRGTLQRNMSNDVAVATMVPGQHSW 450
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQ 180
+I + ++ R + G V N+ ++ QS RG Q PA S +
Sbjct: 451 LQMGDIDKSQT-QRMAVGAMVYGQQNVRSQYAIMQSDGDCRG----QTENPAPYSQTFSE 505
Query: 181 TGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGE 240
GY + P V EPLT +L+ Q+QKQ++ E
Sbjct: 506 FRGY------------------MAPRVGQV--------EPLTPHILSQLTVQKQKQVIAE 539
Query: 241 RLFPLIQRMY--PELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
R+ PL+ R+Y P+ A KI GMLLE+DNAELL ML + L+S++ E
Sbjct: 540 RICPLVPRIYKGPD-ANKIMGMLLEMDNAELLMMLNNEGLLRSRINE 585
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQY 57
DG+ GFGFV F +P++A KAV +M + + LYV+ Q+K +R A L +Y
Sbjct: 233 DGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDRKY 288
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+ E +SKG+GFV F + E A KA+ NG I K +YV Q + +R
Sbjct: 137 VDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSER 185
>gi|159162345|pdb|1G9L|A Chain A, Solution Structure Of The Pabc Domain Of Human Poly(A)
Binding Protein
Length = 144
Score = 150 bits (380), Expect = 5e-34, Method: Compositional matrix adjust.
Identities = 83/115 (72%), Positives = 93/115 (80%), Gaps = 8/115 (6%)
Query: 189 VRNP--GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLI 246
VRNP Q Q+ QPA VHVQGQEPLT++MLA+A PQEQKQMLGERLFPLI
Sbjct: 25 VRNPQQHLNAQPQVTMQQPA------VHVQGQEPLTASMLASAPPQEQKQMLGERLFPLI 78
Query: 247 QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
Q M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 79 QAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQK 133
>gi|430814566|emb|CCJ28224.1| unnamed protein product, partial [Pneumocystis jirovecii]
Length = 685
Score = 150 bits (380), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 166/312 (53%), Gaps = 51/312 (16%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++G+SKGFGFVCFSSP+EATKA+TEMN R++ KPLYVALAQRK+ R++ L SQ R
Sbjct: 383 VDDNGKSKGFGFVCFSSPDEATKAITEMNQRMVSGKPLYVALAQRKDVRRSQLESQINAR 442
Query: 61 IANMRMQQMG-------QLFQPGSTGGY------FVPTLPQPQRFYGPTQMTQIRPQPRW 107
+R+QQ Q PG+ Y F+P P R Q + +PRW
Sbjct: 443 -NQLRIQQQAAAAGMSPQYGMPGAPMFYGQGPTGFMPAGPMTDRGMPFPQPAMVPSRPRW 501
Query: 108 AAAPQMRPSGQ-TAQGFPNIPQFRSAP----RASTGQTVIRGANMSARPITGQSTMGPRG 162
+P+GQ +Q +P + + + R+ V R + +RP M P
Sbjct: 502 VPQQSGQPNGQAISQIYPGMSGYNAYLAIQGRSQRSGQVPRPQGIPSRP------MMPMA 555
Query: 163 GGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
P+ G + G T RN GT+ +G + LT
Sbjct: 556 MRPLL--GSTRMYRVGSNT--------RN-GTKDGIDVGS---------------DDLLT 589
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+ LAAA P+ QKQMLGE L+P +Q P AGKITGMLLE+DN+ELL+++E + +L++K
Sbjct: 590 AASLAAASPENQKQMLGEVLYPKVQAQEPGFAGKITGMLLEMDNSELLHLIEDDVALRAK 649
Query: 283 VEEAVAVLQAHQ 294
VEEA+ VL+ +Q
Sbjct: 650 VEEALIVLKEYQ 661
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 38/59 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ E+G+S+GFGFV + + E+A +AV E++ + LYV AQ+K +R+ L QY Q
Sbjct: 280 VDENGKSRGFGFVNYENHEDAARAVEELHDTEYKDRKLYVCRAQKKHEREEELRKQYEQ 338
>gi|693937|emb|CAA88401.1| polyadenylate binding protein II [Homo sapiens]
Length = 522
Score = 150 bits (379), Expect = 6e-34, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 95/113 (84%), Gaps = 7/113 (6%)
Query: 196 PQAQIGGIQPA----AAGVQ---AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQR 248
P +QI ++P+ A G + AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ
Sbjct: 399 PPSQIAQLRPSPRWTAQGARPHPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQA 458
Query: 249 MYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 459 MHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQK 511
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 87/114 (76%), Gaps = 5/114 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 301 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 360
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA 109
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 361 MASVRAVPNPVINPYQPAPPSGYFIAAIPQTQNRAAYYPPSQIAQLRPSPRWTA 414
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 200 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 257
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 106 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 164
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 165 FTNVYIKNFGE 175
>gi|297263480|ref|XP_001096930.2| PREDICTED: polyadenylate-binding protein 3 [Macaca mulatta]
Length = 592
Score = 150 bits (379), Expect = 7e-34, Method: Compositional matrix adjust.
Identities = 81/113 (71%), Positives = 95/113 (84%), Gaps = 7/113 (6%)
Query: 196 PQAQIGGIQPA----AAGVQ---AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQR 248
P +QI ++P+ A G + AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ
Sbjct: 469 PPSQIAQLRPSPRWTAQGARPQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQA 528
Query: 249 MYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 529 MHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAAQK 581
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 87/114 (76%), Gaps = 5/114 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 371 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 430
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA 109
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 431 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA 484
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 270 DESGKSKGFGFVSFERHEDARKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 327
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 176 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 234
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 235 FTNVYIKNFGE 245
>gi|302767104|ref|XP_002966972.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
gi|300164963|gb|EFJ31571.1| hypothetical protein SELMODRAFT_168822 [Selaginella moellendorffii]
Length = 654
Score = 150 bits (378), Expect = 8e-34, Method: Compositional matrix adjust.
Identities = 125/313 (39%), Positives = 165/313 (52%), Gaps = 49/313 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCF+SPEEA++A TE NG +I KP+YVA+AQRKE R+A L QY QR+
Sbjct: 353 DEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRKEIRQAQLQQQYAQRM 412
Query: 62 ANMR---MQQMGQLFQPGSTGG--YFVPTLPQPQRFYGPTQMTQIRPQPRWAA---APQM 113
+ + Q+ + P +P +PQ Q M Q +P W AP
Sbjct: 413 SGLMPPPGAQVAAAYPPVYYAAPPALLPQVPQRQGL-----MYQPVMRPGWRTGPLAPPG 467
Query: 114 RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPM------Q 167
RPS Q +P + P A Q Q P GG P+ Q
Sbjct: 468 RPSLQP------LPPYALVPNAQRQQR--------------QVRNRPPGGQPLAQIPQLQ 507
Query: 168 APGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQP---AAAGVQAVHVQGQEPL--- 221
P P ++ G + G N+ + Q + +P AAAG + V G P+
Sbjct: 508 IPQPQAIQPGGYKENGRNQ---QQRPRQAMKYVNNGRPRDGAAAGGPVLMVPGNMPMGGN 564
Query: 222 -TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
+M++AA PQ+QKQ+LGERLFPL++ +LAGKITGMLLE+DN+ELL +LE E+L
Sbjct: 565 DVLSMMSAASPQQQKQLLGERLFPLVRTHQFDLAGKITGMLLEMDNSELLVLLETPEALA 624
Query: 281 SKVEEAVAVLQAH 293
SKV+EAV VLQ H
Sbjct: 625 SKVDEAVQVLQQH 637
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 67/152 (44%), Gaps = 13/152 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
E+ +SKGFGFV F PE A AV MN +GS+ +YV AQ+K +R+ L Q+ + R
Sbjct: 250 DENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQKKAEREQILRRQFEEKR 309
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+ + Q L+ TL Q YG +A MR +
Sbjct: 310 MEQFQKYQGANLYVKNLDDSIDDETLKQEFSRYG-----------NITSAKVMRDEKGIS 358
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
+GF + F S AS T G ++ +PI
Sbjct: 359 KGFGFV-CFTSPEEASRAATETNGLMINGKPI 389
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
+DGRSKG+GFV F + E A A+ ++NG + K ++VA ++ DR A
Sbjct: 160 QDGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLA 208
>gi|74189514|dbj|BAE36770.1| unnamed protein product [Mus musculus]
Length = 230
Score = 150 bits (378), Expect = 9e-34, Method: Compositional matrix adjust.
Identities = 77/100 (77%), Positives = 86/100 (86%)
Query: 203 IQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLL 262
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLL
Sbjct: 122 IQPVQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLL 181
Query: 263 EIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
EIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 182 EIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 221
>gi|28189671|dbj|BAC56450.1| similar to poly(A)-binding protein 1 [Bos taurus]
Length = 138
Score = 150 bits (378), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 84/120 (70%), Positives = 94/120 (78%), Gaps = 9/120 (7%)
Query: 185 NKYP-VRNP--GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGER 241
N P VRNP Q Q+ QPA VHVQGQEPLT++MLA+A PQEQKQMLGER
Sbjct: 24 NTLPGVRNPQQHLNAQPQVTMQQPA------VHVQGQEPLTASMLASAPPQEQKQMLGER 77
Query: 242 LFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
LFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+EAVAVLQAHQAK+A K
Sbjct: 78 LFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEAGQK 137
>gi|74141166|dbj|BAE35896.1| unnamed protein product [Mus musculus]
Length = 249
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/100 (77%), Positives = 86/100 (86%)
Query: 203 IQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLL 262
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLL
Sbjct: 122 IQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLL 181
Query: 263 EIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
EIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 182 EIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 221
>gi|380800891|gb|AFE72321.1| polyadenylate-binding protein 4 isoform 3, partial [Macaca mulatta]
Length = 172
Score = 149 bits (377), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 86/101 (85%)
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 63 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 122
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 123 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 163
>gi|380800887|gb|AFE72319.1| polyadenylate-binding protein 4 isoform 1, partial [Macaca mulatta]
Length = 185
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 86/101 (85%)
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 76 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 135
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 136 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 176
>gi|242076392|ref|XP_002448132.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
gi|241939315|gb|EES12460.1| hypothetical protein SORBIDRAFT_06g021850 [Sorghum bicolor]
Length = 664
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 119/314 (37%), Positives = 158/314 (50%), Gaps = 53/314 (16%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++G SKG GFV FS+ EEA++A+TEMNG++I KPLYVA AQRKEDRKA L +Q+ Q
Sbjct: 362 DQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMR 421
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQMRPSG 117
+ M P + P PQ Q FYG I PQP + P MRP G
Sbjct: 422 PAVPMTPTLAPRLP-----MYPPMAPQ-QLFYGQAPPAMIPPQPGFGFQQQLVPGMRPGG 475
Query: 118 QTAQGFPNIPQFRSAPRASTGQTVIR-------GANMSARPITGQSTMGPRG------GG 164
P++P + P GQ R GA Q + PRG G
Sbjct: 476 ------PHMPNY-FVPVVQQGQQGPRPGMRRGAGAQGQQPVPPFQQQIVPRGRMYRYPTG 528
Query: 165 PMQAPGPASVSAAGRQTGGYNK--YPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
PA AG Y+ +PVR+ P AQIG + A
Sbjct: 529 RNMPEAPAMPGVAGGMIQAYDMGGFPVRDAAVSPAAQIGTLTSA---------------- 572
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
LA A P++Q+ +LGE L+PL++++ P A K+TGMLLE+D E+L++LE ++LKSK
Sbjct: 573 ---LANANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMDQTEVLHLLESPDALKSK 629
Query: 283 VEEAVAVLQ--AHQ 294
V EA+ VL+ AHQ
Sbjct: 630 VAEAMDVLRNVAHQ 643
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
DG+S+ FGF+ F +P+ A++AV E+NG+ I K YV AQ+K +R+ L ++ Q + +
Sbjct: 261 DGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKD 320
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
M E G+SKGFGFV + E A A+ +NG +I KP++V RK++R
Sbjct: 167 MDEAGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERD 216
>gi|409045875|gb|EKM55355.1| hypothetical protein PHACADRAFT_255926 [Phanerochaete carnosa
HHB-10118-sp]
Length = 672
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 121/319 (37%), Positives = 156/319 (48%), Gaps = 32/319 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFSSP+EATKAV EMN ++IG+KPLYV+LAQR+E R+ L SQ QR
Sbjct: 367 DEKGSSKGFGFVCFSSPDEATKAVAEMNNKMIGAKPLYVSLAQRREVRRQQLESQIAQR- 425
Query: 62 ANMRMQQMGQLFQPGSTGG--YF-----VPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMR 114
+RMQQ PG G Y+ + G Q + P+PR+
Sbjct: 426 NQIRMQQAAAAGMPGYMNGPMYYPAGPGGFPPQGGRGMMGYGQPGMMPPRPRYT------ 479
Query: 115 PSGQTAQGFPNIP----QFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
P+GQ G P P Q + P + GPR GP APG
Sbjct: 480 PNGQVP-GMPLPPAPYGQPPAGPYPGMAYGRGTPRPGPGGRPPADAVSGPRPAGPSVAPG 538
Query: 171 -------PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTS 223
P +A +Q G P RN GT P AA +
Sbjct: 539 NRPQAGAPPPSAARPQQPG--RPQPARN-GTAPGQA---PATPAALPAPAAAPAVPAFDT 592
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
+ L P EQKQM+GE ++ I +P+LAGKITGMLLE+DNAEL+ ++ +++L KV
Sbjct: 593 STLVNLSPMEQKQMIGEMIYMQIVNQHPDLAGKITGMLLEMDNAELISLVASHDALDGKV 652
Query: 284 EEAVAVLQAHQAKQAAVKK 302
EA+ VLQ Q+K+ A K
Sbjct: 653 SEALNVLQEFQSKEVAEVK 671
Score = 46.6 bits (109), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 39/70 (55%), Gaps = 4/70 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G SKGFGFV F EEA AV ++ + L+V+ AQ+K +R+ L Y
Sbjct: 264 DEEGNSKGFGFVNFEFHEEAQNAVDGLHDTEYNGRKLFVSRAQKKAEREEELRKSY---- 319
Query: 62 ANMRMQQMGQ 71
+ +M++M +
Sbjct: 320 EHAKMEKMSK 329
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E GRSKG+GFV + + E A A+ +NG ++ K +YV K++R +A
Sbjct: 171 DEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISKKERQSKLDEIRAQFT 230
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ + + +++ QLF+
Sbjct: 231 NIYVKNLDPEVSLEEFTQLFE 251
>gi|380800889|gb|AFE72320.1| polyadenylate-binding protein 4 isoform 2, partial [Macaca mulatta]
Length = 185
Score = 149 bits (375), Expect = 2e-33, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 86/101 (85%)
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 76 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 135
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 136 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 176
>gi|146332159|gb|ABQ22585.1| polyadenylate-binding protein 4-like protein [Callithrix jacchus]
Length = 137
Score = 148 bits (374), Expect = 3e-33, Method: Compositional matrix adjust.
Identities = 77/101 (76%), Positives = 86/101 (85%)
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 28 AIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 87
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 88 LEIDNSELLHMLESPESLRSKVDEAVAVLQAHHAKKEAAQK 128
>gi|406698471|gb|EKD01707.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
8904]
Length = 686
Score = 147 bits (372), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 122/308 (39%), Positives = 147/308 (47%), Gaps = 57/308 (18%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G S+GFGFVCFS P+EAT+AV EMNG++IG+KPLYV+LAQ+KE R+ L SQ QR
Sbjct: 375 DDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALESQMQQRN 434
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
A R+Q G G P P YG P M G
Sbjct: 435 AQ-RLQYAAANGLGGPQGYMQAPMYYPPMGPYG---------------GPMMPVRGGVV- 477
Query: 122 GFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQT 181
G+P P M ARP + P PM G AG
Sbjct: 478 GYPGAPPM-----------------MGARPGRYPPSGQPGAPVPM---GYMPPGGAGGNY 517
Query: 182 GGYNKYPVRNPGT-------QPQAQIGGIQ-----------PAAAGVQAVHVQGQEPLTS 223
G YPVR G +P G Q P G QA GQ LT+
Sbjct: 518 PGMPNYPVRPAGNARPPTAARPNGSPSGAQQGLPRGQVPARPQGDGAQAA--AGQPRLTA 575
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
LA A P EQKQMLGE ++PLI PELAGKITGMLLE+DNAELL+++E +L KV
Sbjct: 576 QALARASPGEQKQMLGEAIYPLIHESQPELAGKITGMLLEMDNAELLHLVESPAALTEKV 635
Query: 284 EEAVAVLQ 291
+EA+ VL+
Sbjct: 636 DEALRVLE 643
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ EDG SKGF FV +++ + A KAV E+N + I K LYV AQ++ +R L + +R
Sbjct: 271 VGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEER 330
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
E+G S+GF FV + + E A A+ +NG ++ K +YV K++R++ + Q
Sbjct: 179 DENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEEQ 233
>gi|340939192|gb|EGS19814.1| hypothetical protein CTHT_0042990 [Chaetomium thermophilum var.
thermophilum DSM 1495]
Length = 777
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 127/328 (38%), Positives = 165/328 (50%), Gaps = 55/328 (16%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCF++P++ATKAV EMN R++ KPLYVALAQRKE RK+ L + R +
Sbjct: 431 GKSKGFGFVCFANPDDATKAVAEMNQRMVDGKPLYVALAQRKEVRKSQLEASIQAR-NQL 489
Query: 65 RMQQMGQ-----------LFQPGSTGGYFVPT----LPQPQRFYG--PTQMT---QIRPQ 104
RMQQ ++ PG G+ P +P PQ G P Q Q P
Sbjct: 490 RMQQQAAQAGLPQYMQPPVYYPGQQPGFLPPAAGRGMPFPQGALGMPPVQGGRPGQFPPY 549
Query: 105 P----RWAAAPQ--MRPSGQTAQGFP--NIPQFRSAPRASTGQTVIRGANMSARPITGQS 156
P R PQ M P GQ +P N PQF +A + + G + +
Sbjct: 550 PQQAGRGTIPPQVPMYPIGQFPGAYPQPNNPQFLAAMQQVQQAAALAGGRGAPAGRGVPT 609
Query: 157 TMGPRGGGPMQAPGPASVSAAGR-QTG--GYNKYPVRN--------PGTQPQAQIGGIQP 205
P+G +QAPG A GR Q G G P R+ P P G + P
Sbjct: 610 VPIPQG---IQAPGLAGYPPNGRPQNGNLGRGAGPNRSNFPAGRGAPPAGPLGVPGELSP 666
Query: 206 AAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEID 265
AA L S + A PQ+QKQ+LGE LFP +Q + PELAGKITGMLLE+D
Sbjct: 667 AAL------------LQSQLAATTNPQQQKQILGENLFPKVQALQPELAGKITGMLLEMD 714
Query: 266 NAELLYMLEHNESLKSKVEEAVAVLQAH 293
N EL+ ++E +L +KV EA+AV + +
Sbjct: 715 NQELINLIEDEAALVAKVNEAMAVYEEY 742
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 33/54 (61%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+ +GFGFV +S+ A K V EMNG+ + LYV AQ+K +R+ L Y
Sbjct: 285 EGKPRGFGFVNYSTHASAAKCVEEMNGKEWRGQELYVGRAQKKHEREEELRKSY 338
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 190 DENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYT 249
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 250 NVYIKNI 256
>gi|392574075|gb|EIW67212.1| hypothetical protein TREMEDRAFT_40410 [Tremella mesenterica DSM
1558]
Length = 666
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 129/310 (41%), Positives = 162/310 (52%), Gaps = 51/310 (16%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G S+ FGFVC+SSPEEATKAV+EMNG++IGSKPLYVALAQR+E R+ L SQ QR
Sbjct: 358 DERGVSRNFGFVCYSSPEEATKAVSEMNGKMIGSKPLYVALAQRREARRQALESQIAQR- 416
Query: 62 ANMRM------QQMGQLFQPGSTGGYFVPTLP----------QPQRFYGPTQMTQIRPQP 105
N R+ G + QP Y P +P +P Y P M Q +P
Sbjct: 417 TNQRVPYAPGGMPQGYMNQP----MYGYPPMPGYGQPGMMPMRPMMGYNPQMMQQ---RP 469
Query: 106 RWAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIR--GANMSARPITGQSTMGPRGG 163
R+ AP M G P + P A +R +SARP
Sbjct: 470 RYPPAP-MNQPGMGMPPMPYGMPPQQMPYAIPPNYPVRPGPGGISARP------------ 516
Query: 164 GPMQAPGPASVSAAGRQTGGYN--KYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPL 221
P AP PA GR GG + Y PG+ P+ Q+ +P VQ Q L
Sbjct: 517 -PTSAPAPAQ----GRINGGPSPVGYSSGLPGSMPR-QMPMARPGYDQVQP----QQNKL 566
Query: 222 TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
++ LA A EQKQMLGE L+PLI PELAGKITGMLLE+DN+ELL+++E +L
Sbjct: 567 SAQALARAPLAEQKQMLGEALYPLIGATQPELAGKITGMLLEMDNSELLHLIESPPALLE 626
Query: 282 KVEEAVAVLQ 291
KV+EA+ VL+
Sbjct: 627 KVDEALKVLE 636
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 34/53 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
+ E+G+SKGFGFV + S E A KAV E+N + + + L+ AQ++ +R L
Sbjct: 254 LDEEGKSKGFGFVNYVSHEAAEKAVDELNDKEVNGQKLWAGRAQKRVERDTEL 306
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 17/68 (25%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA-------QRKEDRKAHL 53
+ EDG+S+GF FV + + E A A+ ++G ++ K ++V + E+++AH
Sbjct: 161 VDEDGKSRGFAFVHYQTGEAADAAIKGVDGMMLNDKKVFVGHHIGKKERQSKAEEQRAHF 220
Query: 54 ASQYMQRI 61
+ +++ +
Sbjct: 221 TNVFVKNV 228
>gi|159462882|ref|XP_001689671.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
gi|158283659|gb|EDP09409.1| polyadenylate-binding protein RB47 [Chlamydomonas reinhardtii]
Length = 636
Score = 147 bits (372), Expect = 5e-33, Method: Compositional matrix adjust.
Identities = 115/296 (38%), Positives = 159/296 (53%), Gaps = 14/296 (4%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCF+S +EAT+AVTEMNG+++ KPLYVALAQRK+ R+A L + R+
Sbjct: 341 GKSKGFGFVCFTSHDEATRAVTEMNGKMVKGKPLYVALAQRKDVRRAQLEANMQARMG-- 398
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT---AQ 121
MG + +P + Q +RP PR A + RP A+
Sbjct: 399 ----MGAMSRPPNPMAVTSACAHQAASKPASPHPAMLRPLPRRHAVLRSRPRRHGCWPAR 454
Query: 122 GFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPM---QAPGPASVSAAG 178
++P +A R + + + A P G GP GP + P PA ++
Sbjct: 455 SGHDVPAHDAAARHAWPRPRPPRPH-DAAPDDGWPHDGP-AHGPRARPRTPAPAPWTSRA 512
Query: 179 RQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQML 238
P P P A AA + Q+PLT++ LAAA P++QK M+
Sbjct: 513 ASRAAAQPKPAAEPAAAPAAAAPAAAAPAAAAEPEAPAAQQPLTASALAAAAPEQQKMMI 572
Query: 239 GERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
GERL+P + + P+LAGKITGMLLE+DNAELL +LE +E+L SKV+EA+AVL+ H
Sbjct: 573 GERLYPQVAELQPDLAGKITGMLLEMDNAELLMLLESHEALVSKVDEAIAVLKQHN 628
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
M +D G SKGFGF+ F E A K V +N R + K LY AQ+K +R+A L
Sbjct: 233 MKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAML 286
>gi|119627666|gb|EAX07261.1| poly(A) binding protein, cytoplasmic 4 (inducible form), isoform
CRA_a [Homo sapiens]
Length = 115
Score = 147 bits (371), Expect = 6e-33, Method: Compositional matrix adjust.
Identities = 73/91 (80%), Positives = 82/91 (90%)
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+
Sbjct: 16 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 75
Query: 272 MLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 76 MLESPESLRSKVDEAVAVLQAHHAKKEAAQK 106
>gi|401886540|gb|EJT50568.1| polyadenylate-binding protein [Trichosporon asahii var. asahii CBS
2479]
Length = 686
Score = 147 bits (370), Expect = 8e-33, Method: Compositional matrix adjust.
Identities = 121/308 (39%), Positives = 147/308 (47%), Gaps = 57/308 (18%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G S+GFGFVCFS P+EAT+AV EMNG++IG+KPLYV+LAQ+KE R+ L SQ QR
Sbjct: 375 DDKGASRGFGFVCFSQPDEATRAVQEMNGKMIGTKPLYVSLAQKKEVRRQALESQMQQRN 434
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
A R+Q G G P P YG P M G
Sbjct: 435 AQ-RLQYAAANGLGGPQGYMQAPMYYPPMGPYG---------------GPMMPVRGGVV- 477
Query: 122 GFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQT 181
G+P P M ARP + P PM G AG
Sbjct: 478 GYPGAPPM-----------------MGARPGRYPPSGQPGAPVPM---GYMPPGGAGGNY 517
Query: 182 GGYNKYPVRNPGT-------QPQAQIGGIQ-----------PAAAGVQAVHVQGQEPLTS 223
G YPVR G +P G Q P G QA GQ LT+
Sbjct: 518 PGMPNYPVRPAGNARPPTAARPNGSPSGAQQGLPRGQVPARPQGDGAQAA--AGQPRLTA 575
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
LA A P EQ+QMLGE ++PLI PELAGKITGMLLE+DNAELL+++E +L KV
Sbjct: 576 QALARASPGEQRQMLGEAIYPLIHESQPELAGKITGMLLEMDNAELLHLVESPAALTEKV 635
Query: 284 EEAVAVLQ 291
+EA+ VL+
Sbjct: 636 DEALRVLE 643
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 37/60 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ EDG SKGF FV +++ + A KAV E+N + I K LYV AQ++ +R L + +R
Sbjct: 271 VGEDGLSKGFAFVNYTTHDAAKKAVDELNDKEINGKKLYVGRAQKRAERDEELRRMHEER 330
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 32/55 (58%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
E+G S+GF FV + + E A A+ +NG ++ K +YV K++R++ + Q
Sbjct: 179 DENGNSRGFAFVHYETGEAADAAIKSVNGMLLNDKKVYVGHHISKKERQSKVEEQ 233
>gi|330793331|ref|XP_003284738.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
gi|325085338|gb|EGC38747.1| RNA-binding region-containing protein (RNP-1) [Dictyostelium
purpureum]
Length = 565
Score = 146 bits (369), Expect = 9e-33, Method: Compositional matrix adjust.
Identities = 117/293 (39%), Positives = 148/293 (50%), Gaps = 58/293 (19%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI-ANMR 65
SKGFGFVC++SP+EAT+AVTEMNGR+IG+KPLYVALAQRK+ R+A L Q+ Q+ A MR
Sbjct: 325 SKGFGFVCYTSPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKAGMR 384
Query: 66 MQQMGQLFQPGSTGG--YFVPTLPQPQRFYGPTQMTQIRPQPR-WAAAPQMRPSGQTAQG 122
Q P +GG +F P P Y Q+ P+PR W AP P Q
Sbjct: 385 -----QTMAPAYSGGPVFFTPAPVTPAVVY-----QQMMPRPRNWNGAPVGVPGNQ---- 430
Query: 123 FPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTG 182
G +RG RP GQ GPR G Q P A A
Sbjct: 431 --------------YGMNYVRGGG-QPRP-NGQRPTGPRPNG--QRPDSAQPIAT----- 467
Query: 183 GYNKYPVRNPGT-QPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGER 241
+ P + T QPQA G Q AA P S++LA +Q LGE
Sbjct: 468 ---QQPAVDQATQQPQAASGASQEAA------------PTLSSILALPTRDQQNVALGEL 512
Query: 242 LFPLIQRMYPELAGKITGMLLE-IDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
L+PLI PELAGKITGMLL+ + EL + + ++ L K++EA+ VL A+
Sbjct: 513 LYPLIHNSQPELAGKITGMLLDSLPVEELFALTQRSDLLNEKIKEAIDVLNAN 565
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G+SKGF F F S + A V NG++ KPLY AQ+K +R+A L +
Sbjct: 226 GKSKGFAFANFESADAAKNVVEIENGKVFHGKPLYAGRAQKKIEREAELKHTF 278
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 21/82 (25%), Positives = 44/82 (53%), Gaps = 5/82 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR----KAHLASQY 57
++ SKGFGFV + S + A KA+ ++NG +I + ++V + ++R + + +
Sbjct: 132 DDNNSSKGFGFVHYESQDSADKAIAKVNGMMINGQKVFVGPFKSSKERGQPTEIKFTNVF 191
Query: 58 MQRIA-NMRMQQMGQLFQPGST 78
+ +A ++ Q+ +L P T
Sbjct: 192 FKNLAEDVTSDQLKELLAPYGT 213
>gi|226496737|ref|NP_001151785.1| LOC100285420 [Zea mays]
gi|195649671|gb|ACG44303.1| polyadenylate-binding protein 2 [Zea mays]
gi|414586484|tpg|DAA37055.1| TPA: polyadenylate-binding protein 2 [Zea mays]
Length = 660
Score = 146 bits (368), Expect = 1e-32, Method: Compositional matrix adjust.
Identities = 114/315 (36%), Positives = 155/315 (49%), Gaps = 53/315 (16%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++G SKG GFV FS+ EEA++A+TEMNG++I KPLYVA AQRKEDRKA L +Q+ Q
Sbjct: 356 DQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQMR 415
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQMRPSG 117
+ M P + P PQ Q FYG I PQP + P MRP G
Sbjct: 416 PAVPMTPTLAPRLP-----MYPPMAPQ-QLFYGQAPPAMIPPQPGFGFQQQLVPGMRPGG 469
Query: 118 QTAQGFPNIPQF--------------RSAPRASTGQTVIRGANMSARPIT--GQSTMGPR 161
P++P + R R G + + I G+ P
Sbjct: 470 ------PHMPNYFVPVVQHQQGQQGPRPGIRRGAGAQGQQPVPPFQQQIVPRGRMYRYPT 523
Query: 162 GGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPL 221
G +AP V+ Q +PVR+ P AQIG + A
Sbjct: 524 GRNMPEAPAMPGVAGGMMQAYDMGGFPVRDAALSPAAQIGTLTSA--------------- 568
Query: 222 TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
LA A P++Q+ +LGE L+PL++++ P A K+TGMLLE+D E+L++LE ++LKS
Sbjct: 569 ----LANANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMDQTEVLHLLESPDALKS 624
Query: 282 KVEEAVAVLQ--AHQ 294
KV EA+ VL AHQ
Sbjct: 625 KVAEAMDVLHNVAHQ 639
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 40/60 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
DG+S+ FGF+ F +P+ A++AV E+NG+ I K YV AQ+K +R+ L ++ Q + +
Sbjct: 255 DGKSRCFGFINFENPDAASRAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQILKD 314
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 31/50 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
M E G+SKGFGFV + E A A+ +NG +I KP++V RK++R
Sbjct: 161 MDEGGQSKGFGFVQYEKEEAAQNAIKSLNGMLINDKPVFVGPFLRKQERD 210
>gi|258565691|ref|XP_002583590.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
gi|237907291|gb|EEP81692.1| polyadenylate-binding protein [Uncinocarpus reesii 1704]
Length = 765
Score = 145 bits (367), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 125/323 (38%), Positives = 156/323 (48%), Gaps = 51/323 (15%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR--IA 62
G+SKGFGFVCFSSP+EA+KAVTEMN R++ KPLYVALAQRK+ R++ L + R I
Sbjct: 429 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIR 488
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA--------AAPQMR 114
+ + QP QP FYGP Q + P R PQM
Sbjct: 489 QQQAAAAAGMPQP----------FMQPPVFYGPGQQNFL-PNQRGGMPFQQPGMVIPQM- 536
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTV---IRGANMSARPITGQSTMGPRGGGPMQAPGP 171
P G+ Q F P + + Q + G PI+ Q M P G + P
Sbjct: 537 PGGRHGQ-FSGFPGQQGGRGMNPNQQIPPNAYGLGAQGLPISMQGGM-PNG---LNYPQM 591
Query: 172 ASVSA-AGRQTG---GYNKYPVRNPGTQPQAQIG-----------------GIQPAAAGV 210
A V A GR G P G P AQ G G PA A
Sbjct: 592 AQVQAPFGRGRGQVPAVQGMPPNVQGMGPNAQFGRGMPMQQGMGRPGQAGRGQGPAQAAG 651
Query: 211 QAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELL 270
Q LT ML AA P +QKQMLGE ++P I PELAGKITGMLLE+DNAELL
Sbjct: 652 QRDETSSPSGLTLQMLNAAPPAQQKQMLGEAIYPKIHAHQPELAGKITGMLLEMDNAELL 711
Query: 271 YMLEHNESLKSKVEEAVAVLQAH 293
+++ + +LK+KV+EA+ V +
Sbjct: 712 ALVDDDTALKAKVDEALTVYDEY 734
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 36/56 (64%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
SE G+S+GFGFV F+S E A AV +N + S+ LYV AQ+K +R+ L QY
Sbjct: 270 SESGKSRGFGFVNFTSHESAAAAVDNLNEKDFKSQKLYVGRAQKKHEREEELRKQY 325
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 176 DEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFT 235
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I + ++ +LF+
Sbjct: 236 NVYVKNIDQDTTDEEFRELFE 256
>gi|119612220|gb|EAW91814.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_a [Homo
sapiens]
Length = 287
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 87/114 (76%), Gaps = 5/114 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 76 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 135
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA 109
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 136 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA 189
>gi|383417509|gb|AFH31968.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 456
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 77/136 (56%), Positives = 96/136 (70%), Gaps = 18/136 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 323 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 382
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW
Sbjct: 383 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRW-------- 434
Query: 116 SGQTAQGF--PNIPQF 129
TAQG P+IP++
Sbjct: 435 ---TAQGARPPSIPKY 447
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 222 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 279
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/86 (25%), Positives = 47/86 (54%), Gaps = 1/86 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTL 86
N+ ++ G+ F P L
Sbjct: 190 FTNVYIKNFGEDMDDERLKDLFGPAL 215
>gi|388582290|gb|EIM22595.1| polyadenylate binding protein [Wallemia sebi CBS 633.66]
Length = 637
Score = 145 bits (366), Expect = 2e-32, Method: Compositional matrix adjust.
Identities = 124/297 (41%), Positives = 165/297 (55%), Gaps = 32/297 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFSSP+EATKAV+E++G++IGSKPLYV+LAQR++ R+ L SQ QR
Sbjct: 356 DEKGTSKGFGFVCFSSPDEATKAVSELSGKMIGSKPLYVSLAQRRDVRRQQLESQIAQR- 414
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
+R+Q P S F+P P +Y P P P G++
Sbjct: 415 NQLRLQHQAAAGVPISG---FMPGAPM---YYQPP--------------PGAYPGGRSMY 454
Query: 122 GFPNI--PQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGR 179
G P P+ R P GQ V S Q M P P + PA + A
Sbjct: 455 GQPGFAPPRPRGYP---AGQQVPGMPIPSPYGPPPQGYM-PANYRPAR---PARANGAQV 507
Query: 180 QTGGYNKYPVR--NPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQM 237
Q G VR P + P+ ++PA + + PL++++LA A P EQKQM
Sbjct: 508 QGGSPTANNVRPAVPASGPRPAGVPVRPAQGAAKPAKQEAGGPLSASVLANAPPAEQKQM 567
Query: 238 LGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
LGE L+P I + PELAGKITGMLLE++N+ELL++LE+ E+LKSKV+EA+AVL +Q
Sbjct: 568 LGEALYPKIFNIQPELAGKITGMLLEMENSELLFLLENEEALKSKVDEAIAVLNEYQ 624
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 41/160 (25%), Positives = 71/160 (44%), Gaps = 29/160 (18%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY---- 57
E G S+GFGFV + + EEA KAV +N + K ++ A AQ+K +R+ L Y
Sbjct: 253 DEQGNSRGFGFVNYKNHEEAAKAVESLNEVEVDGKKIFAARAQKKNEREEELRRNYEQAK 312
Query: 58 MQRIA-----NMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQ 112
++++A N+ ++ + F G F P +G +I
Sbjct: 313 LEKLAKYAGVNLYVKNLDDDFDDERLVGEFEP--------FGTITSAKI----------- 353
Query: 113 MRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
MR T++GF + F S A+ + + G + ++P+
Sbjct: 354 MRDEKGTSKGFGFVC-FSSPDEATKAVSELSGKMIGSKPL 392
Score = 45.8 bits (107), Expect = 0.024, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 35/58 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+G S+G+GFV + + E A+ A+ +NG ++ K +YV K++R+A + Q Q
Sbjct: 160 DENGNSRGYGFVHYENGESASAAIQHVNGMLLNDKKVYVGHHVSKKERQAKIDEQKSQ 217
>gi|119612224|gb|EAW91818.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_d [Homo
sapiens]
Length = 472
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 71/114 (62%), Positives = 87/114 (76%), Gaps = 5/114 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA 109
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA 439
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|383417507|gb|AFH31967.1| polyadenylate-binding protein 1 [Macaca mulatta]
gi|383417511|gb|AFH31969.1| polyadenylate-binding protein 1 [Macaca mulatta]
Length = 459
Score = 145 bits (365), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 77/136 (56%), Positives = 96/136 (70%), Gaps = 18/136 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRW-------- 437
Query: 116 SGQTAQGF--PNIPQF 129
TAQG P+IP++
Sbjct: 438 ---TAQGARPPSIPKY 450
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|7673357|gb|AAF66824.1|AF190656_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 330
Score = 144 bits (364), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 119/311 (38%), Positives = 160/311 (51%), Gaps = 38/311 (12%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
G SKG GFV FS+PEEA++A++EMNG+++ SKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 26 SGVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ---- 81
Query: 64 MRMQQMGQ-------LFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQ 112
MR M ++ PG P L Q Q FYG Q + PQ + P
Sbjct: 82 MRPIAMASSVAPRMPMYPPGG------PGLGQ-QIFYGQPQPAMLPPQAGFGYQQQLVPG 134
Query: 113 MRPSGQTAQGF--PNIPQFRSAPRAST--GQTVIRGANMSARPITGQSTMGPRGGGPMQA 168
MRP G F P + Q + R + G V P+ Q M PRG G
Sbjct: 135 MRPGGGPMPNFFMPMVQQGQQGQRPGSRRGGAVPLQQGQQPVPLM-QQQMFPRGRGYRYP 193
Query: 169 PGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
PG A GG + G P G +QP G A T LA
Sbjct: 194 PGRGLPDVAFPGVGGGMFSIPYDMGGMPVRDAGIVQPIPVGALA-----------TALAN 242
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
+ P EQ+ MLGE L+PL++++ PE A K+TGMLLE+D E+L++LE E+LK+KV EA+
Sbjct: 243 SSPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 302
Query: 289 VLQAHQAKQAA 299
VL+ +Q++
Sbjct: 303 VLRNVSQQQSS 313
>gi|344242495|gb|EGV98598.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 147
Score = 144 bits (363), Expect = 4e-32, Method: Compositional matrix adjust.
Identities = 73/90 (81%), Positives = 82/90 (91%)
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
AV VQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P L GKITGMLLEIDN+ELL+
Sbjct: 47 AVQVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLVGKITGMLLEIDNSELLH 106
Query: 272 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 107 MLESPESLRSKVDEAVAVLQAHQAKEAAQK 136
>gi|115390925|ref|XP_001212967.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
gi|121739603|sp|Q0CR95.1|PABP_ASPTN RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|114193891|gb|EAU35591.1| polyadenylate-binding protein [Aspergillus terreus NIH2624]
Length = 753
Score = 144 bits (362), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 155/331 (46%), Gaps = 70/331 (21%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR--IA 62
G+SKGFGFVCFSSP+EA+KAVTEMN R+I KPLYVALAQRK+ R++ L + R I
Sbjct: 420 GKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRSQLEASIQARNTIR 479
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI----------RPQP-RWAAAP 111
+ + QP QP FYGP Q I PQP P
Sbjct: 480 QQQAAAAAGMPQP----------YMQPAVFYGPGQQGFIPGGQRGGLPFAPQPGMMMGVP 529
Query: 112 QMRPSGQTAQGFPNI-------------PQF-RSAPRASTGQTVIRGANMSARPITGQST 157
RP GQ FP P F + P + G I N P GQ
Sbjct: 530 GGRP-GQYPGPFPGQQGGRGMGPNQQIPPNFAQGIPMGAMGPGGI--PNGMGYPQMGQVQ 586
Query: 158 MGPRGGGPMQAPG---------------PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGG 202
G GG Q PG V G+ G R QP A G
Sbjct: 587 FGRGAGGRGQVPGMPMGQGMRGPGYGQGRGGVPVQGQMRPGQGG---RGQNAQPAAGRGE 643
Query: 203 IQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLL 262
PAA LT+ LAAA +QKQMLGE L+P IQ PELAGKITGMLL
Sbjct: 644 EAPAAG------------LTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLL 691
Query: 263 EIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
E+DN ELL +LE +E+L++KV+EA++V +
Sbjct: 692 EMDNTELLSLLEDDEALRAKVDEALSVYDEY 722
Score = 54.7 bits (130), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV +S+ + A AV EMN + + + LYV AQ+K +R+ L QY
Sbjct: 263 DQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQY 318
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 170 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 229
Query: 55 SQYM----QRIANMRMQQMGQLF 73
+ Y+ Q I+ +QM + F
Sbjct: 230 NVYIKNLDQEISEEEFRQMFEKF 252
>gi|414588970|tpg|DAA39541.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 654
Score = 144 bits (362), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 120/313 (38%), Positives = 162/313 (51%), Gaps = 48/313 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G S+G GFV F S E+A +A+TEMNG+++GSKPLYVALAQRKEDRKA L +Q+ Q
Sbjct: 351 DSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQ-- 408
Query: 62 ANMRMQQMG-------QLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AA 110
MR M +F PG VP + Q Q FYG I PQ +A
Sbjct: 409 --MRPVAMAPSVGPRMPMFPPG------VPGVGQ-QLFYGQPPPAFINPQAGFAFQQPLM 459
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSA------RPITGQSTMGPRGGG 164
P MRP G +P F P GQ R A A P+ GQ + PRGG
Sbjct: 460 PGMRPGGP-------MPNFM-MPMVQQGQQPQRPAGRRAGGMQQPMPMGGQQQVFPRGGR 511
Query: 165 PMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
+ P + G + G P ++GG+ A Q V + +T
Sbjct: 512 GYRYPTGRGMPDPGMHSVG--------AVMPPSYEMGGMPMREAAPQPVPIGA----LAT 559
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
LA A P +Q+ MLGE L+PL++++ E A K+TGMLLE+D E+L++LE ++LK+KV
Sbjct: 560 ALANAPPDQQRLMLGENLYPLVEQLEREQAAKVTGMLLEMDQTEVLHLLESPDALKAKVA 619
Query: 285 EAVAVLQAHQAKQ 297
EA+ VL++ Q Q
Sbjct: 620 EAMEVLRSAQHLQ 632
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 13/152 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+S+ FGFV F + + A +AV E+NG+I K LYV AQ+K +R+ L ++ + +
Sbjct: 248 DSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNV 307
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQ-PRWAAAPQMRPSGQTA 120
Q++ + FQ +T Y L + ++ ++ + + MR S +
Sbjct: 308 -----QEVAEKFQ--NTNLY----LKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVS 356
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
+G F+SA A+ T + G + ++P+
Sbjct: 357 RG-SGFVAFKSAEDANRALTEMNGKMVGSKPL 387
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
G S+G+GFV F E A A+ ++NG +I K ++V RK+DR+
Sbjct: 160 GESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRE 205
>gi|225441084|ref|XP_002264613.1| PREDICTED: probable polyadenylate-binding protein At2g36660 [Vitis
vinifera]
gi|297740018|emb|CBI30200.3| unnamed protein product [Vitis vinifera]
Length = 634
Score = 143 bits (361), Expect = 7e-32, Method: Compositional matrix adjust.
Identities = 123/303 (40%), Positives = 163/303 (53%), Gaps = 23/303 (7%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G SKGFGFVCFS+P+EA+KAV +G + KPLYVA+AQRKEDR+A L Y QR+
Sbjct: 328 DQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIAQRKEDRQAQLQLHYAQRM 387
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRP---QPRWAA---APQMRP 115
A + P GGY P P Q +P + W A P RP
Sbjct: 388 AGLAGPST-----PVIPGGYPPLYYTAPPGVIPPRQGLMYQPLGLRTGWRANNLIPPTRP 442
Query: 116 SGQTAQ--GFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
+ Q + PN P+ R T + +G S + P P Q P +
Sbjct: 443 AFQPSSIPLMPNTPRQHRQNRGRTNGHIPQGGGHS-------TAFMPHLQQPTQ-PVISP 494
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQE 233
+ +Q G KY V N + ++ GI AA+ QG E L+S MLAAA P++
Sbjct: 495 KDSINQQRAGQAKY-VPNGRSYEMSKGSGIPSAASNSVGTGSQGSEMLSS-MLAAASPEQ 552
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQ+LGE L+PL+Q+ P+LA KITGMLLE+DN+ELL +LE ESL +KVEEAV VL+
Sbjct: 553 QKQILGEHLYPLVQKQKPDLAAKITGMLLEMDNSELLLLLESPESLAAKVEEAVQVLKLS 612
Query: 294 QAK 296
++K
Sbjct: 613 KSK 615
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
E+G S+GFGFV F SPE+A +A+ +NG +GSK LYVA AQ+K +R+ L Q+ ++
Sbjct: 225 DENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEK 283
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
++EDG+SKG+GFV F S E A A+ ++NG II K +Y RK DR
Sbjct: 133 VTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFVRKTDR 181
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 24/77 (31%), Positives = 43/77 (55%), Gaps = 5/77 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQR 60
S GRS +G+V F SP++A+ A+ N ++ K + V + R D R++ + + +++
Sbjct: 47 SSSGRSLCYGYVNFISPQDASHAIEAKNHTMLHGKVIRVMWSHRDPDARRSGIGNVFVKN 106
Query: 61 ----IANMRMQQMGQLF 73
I N+R+Q M Q F
Sbjct: 107 LSDSIDNVRLQAMFQKF 123
>gi|302755232|ref|XP_002961040.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
gi|300171979|gb|EFJ38579.1| hypothetical protein SELMODRAFT_74731 [Selaginella moellendorffii]
Length = 625
Score = 143 bits (361), Expect = 8e-32, Method: Compositional matrix adjust.
Identities = 118/303 (38%), Positives = 161/303 (53%), Gaps = 57/303 (18%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCF+SPEEA++A TE NG +I KP+YVA+AQRKE R+A L QY QR+
Sbjct: 352 DEKGISKGFGFVCFTSPEEASRAATETNGLMINGKPIYVAMAQRKEIRQAQLQQQYAQRM 411
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
+ G + PG+ Q+ P +AA P + P Q
Sbjct: 412 S-------GLMPPPGA-------------------QVAAAYPPVYYAAPPALLPQVPQRQ 445
Query: 122 GF---PNI-PQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAA 177
G P + P +R+ P A G+ S +P+ + + + G P+ S +
Sbjct: 446 GLMYQPVMRPGWRTGPLAPPGRP-------SLQPLPPYALVRNKKGVPL--------SIS 490
Query: 178 GRQTGGYNKYPVRNPGTQPQAQIGGIQP---AAAGVQAVHVQGQEPL----TSTMLAAAQ 230
G + P Q + +P AAAG + V G P+ +M++AA
Sbjct: 491 SYIVGVMQQRP-----RQAMKYVNNGRPRDGAAAGGPVLMVPGNMPMGGNDVLSMMSAAS 545
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
PQ+QKQ+LGERLFPL++ +LAGKITGMLLE+DN+ELL +LE E+L SKV+EAV VL
Sbjct: 546 PQQQKQLLGERLFPLVRTHQFDLAGKITGMLLEMDNSELLVLLETPEALASKVDEAVQVL 605
Query: 291 QAH 293
Q H
Sbjct: 606 QQH 608
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 47/151 (31%), Positives = 68/151 (45%), Gaps = 11/151 (7%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+ +SKGFGFV F PE A AV MN +GS+ +YV AQ+K +R+ L Q+ ++
Sbjct: 249 DENDKSKGFGFVNFDDPEAARAAVETMNNSQLGSRTIYVGRAQKKAEREQILRRQFEEK- 307
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
RM+Q FQ +V L T + +A MR ++
Sbjct: 308 ---RMEQ----FQKYQGANLYVKNL--DDSIDDETLKQEFSRYGNITSAKVMRDEKGISK 358
Query: 122 GFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
GF + F S AS T G ++ +PI
Sbjct: 359 GFGFVC-FTSPEEASRAATETNGLMINGKPI 388
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
+DGRSKG+GFV F + E A A+ ++NG + K ++VA ++ DR A
Sbjct: 159 QDGRSKGYGFVHFETDEAANLAIEKVNGMQLVGKKVFVAKFVKRSDRLA 207
>gi|325182450|emb|CCA16902.1| polyadenylatebinding protein putative [Albugo laibachii Nc14]
Length = 675
Score = 143 bits (361), Expect = 9e-32, Method: Compositional matrix adjust.
Identities = 116/295 (39%), Positives = 156/295 (52%), Gaps = 23/295 (7%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G S+GFGFVCFS+PEEA AV EMNG++I KP+YVA AQRKE R+A L +Q+ QR +
Sbjct: 398 GNSRGFGFVCFSTPEEAATAVAEMNGKLITGKPVYVAFAQRKEVRRAQLEAQHAQRATGV 457
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGFP 124
+ + + QP P P + P QM ++ + + QM P G P
Sbjct: 458 LVNRGMPMGQP--------PMYGAPMFYAQPNQMP-MQGRQAYMYPQQMLPRGV----HP 504
Query: 125 NIP-----QFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGR 179
+P + AP + G M + + P GP AP +
Sbjct: 505 RVPFGFGGRMPGAPGPAGFSMAGYGMPMQQQRQPRRGRQVP---GPAGAPNGMPNRRNFK 561
Query: 180 QTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLG 239
T G +P R + GG+ P + EPLTS LAAA P+ QK M+G
Sbjct: 562 YTTGARNHPSREGLGNNMS--GGVMPQGSSTPMGGAPALEPLTSAALAAASPEAQKNMIG 619
Query: 240 ERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
ERL+PLI R ELAGKITGMLLE+DN+ELL++LE ++L SK++EA+ VL+AHQ
Sbjct: 620 ERLYPLIHRQQNELAGKITGMLLEMDNSELLHLLESPDALDSKIQEAIQVLEAHQ 674
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 16/45 (35%), Positives = 32/45 (71%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
G+SKG+G+V + + E AT+A+ ++NG +I ++V Q++++R
Sbjct: 201 GQSKGYGYVHYETAEAATEAINKINGMLIAGTEVFVGHFQKRQER 245
>gi|405973173|gb|EKC37903.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 465
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 77/124 (62%), Positives = 93/124 (75%), Gaps = 9/124 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E+GRSKGFGFV FSSPEEATKA+ EMN +II ++PLYVALAQRKEDRKA+LA MQR
Sbjct: 326 MTENGRSKGFGFVYFSSPEEATKAIVEMNEKIIEARPLYVALAQRKEDRKAYLALLNMQR 385
Query: 61 IANMRM-----QQMGQLFQPGSTGGYFVPTLPQPQR-FYGPTQMTQIRPQPRWAAAPQMR 114
I +MRM Q+GQ+FQ GS GYFVPT+PQ QR ++ P M +R PRW +R
Sbjct: 386 ITSMRMQGQQIGQVGQMFQAGS-AGYFVPTMPQAQRTYFTPNNMPVMRSHPRWQTT--VR 442
Query: 115 PSGQ 118
P+GQ
Sbjct: 443 PTGQ 446
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 28/63 (44%), Positives = 38/63 (60%), Gaps = 1/63 (1%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMR 65
+SK FGFV F +PE A KAV +NG K LYV AQ K +R+A L ++ +RI R
Sbjct: 229 KSKQFGFVSFENPEAAKKAVEALNGNDNAGKILYVGRAQTKIERQAELKEKF-ERIRKER 287
Query: 66 MQQ 68
+ +
Sbjct: 288 INR 290
>gi|356576103|ref|XP_003556173.1| PREDICTED: polyadenylate-binding protein 5-like isoform 2 [Glycine
max]
Length = 642
Score = 143 bits (360), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 159/310 (51%), Gaps = 38/310 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +GRSKG GFV FS+PEEA+KA+ EMNG++IG KPLYVA+AQRKE+RKAHL +Q+ Q
Sbjct: 351 IDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFAQI 410
Query: 61 IANMRMQQMGQ---LFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSG 117
A M + L+ PG+ P L Q +YG + PQP
Sbjct: 411 RAPGGMAPLPAGIPLYHPGA------PRLAPQQLYYGQGTPGFMPPQP------------ 452
Query: 118 QTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAA 177
GF Q R I ++ + GQ T G R G Q
Sbjct: 453 ---AGFSFQQQILPGMRPGVAPNFIMPYHLQRQGQLGQRT-GVRRNGNFQQVQQNQQMLH 508
Query: 178 GRQTGGYNKYPV-RN---PGTQPQAQIGGIQP---AAAGVQAVHVQGQEP--LTSTM--- 225
G+ P RN P P +G + P +GV A Q P L++T+
Sbjct: 509 RNSNQGFRYMPNGRNGMDPSLVPHGLMGPMMPMPFDGSGVTAAPNDNQRPGALSTTLASA 568
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYP-ELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
LA+A P+ Q+ MLGE L+PL++R+ P + K+TGMLLE+D +E++ ++E E LK+KV
Sbjct: 569 LASATPENQRMMLGEHLYPLVERLAPNQYTAKVTGMLLEMDQSEVINLIESPEDLKTKVS 628
Query: 285 EAVAVLQAHQ 294
EA+ VLQ+ +
Sbjct: 629 EAMQVLQSRK 638
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ-RI 61
+G+S+ FGFV F +P+ A AV +NG I + + LYV AQRK +R+A L ++ Q RI
Sbjct: 250 NGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERI 309
Query: 62 ANMRMQQMGQLF 73
+ Q L+
Sbjct: 310 SRYEKLQGANLY 321
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+ G+SKG+GFV F + E A A+ +NG +I K +YV L R+++R+
Sbjct: 156 LDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQERE 205
>gi|7673355|gb|AAF66823.1|AF190655_1 poly(A)-binding protein [Nicotiana tabacum]
Length = 649
Score = 142 bits (359), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 159/309 (51%), Gaps = 36/309 (11%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G SKG GFV FS+PEEA++A++EMNG+++ SKPLYVALAQRKE+R+A L +Q+ Q M
Sbjct: 346 GVSKGSGFVAFSNPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ----M 401
Query: 65 RMQQMGQ-------LFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQM 113
R M ++ PG P L Q Q FYG Q + PQ + P M
Sbjct: 402 RPIAMASSVAPRMPMYPPGG------PGLGQ-QIFYGQPQPAMLPPQAGFGYQQQLVPGM 454
Query: 114 RPSGQTAQGF--PNIPQFRSAPRASTGQTVIRGANMSARPI-TGQSTMGPRGGGPMQAPG 170
RP G F P + Q + R + +P+ Q M PRG G PG
Sbjct: 455 RPGGGPMPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQPVPLMQQQMFPRGRGYRYPPG 514
Query: 171 PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
A GG + G P G +QP G A T LA +
Sbjct: 515 RGLPDVAFPGVGGGMFSIPYDMGGMPVRDAGIVQPIPVGALA-----------TALANSS 563
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P EQ+ MLGE L+PL++++ PE A K+TGMLLE+D E+L++LE E+LK+KV EA+ VL
Sbjct: 564 PTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 623
Query: 291 QAHQAKQAA 299
+ +Q++
Sbjct: 624 RNVSQQQSS 632
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
EDG+S+ FGFV F + E+A +AV +NG + +K +V AQ+K +R+ L ++ Q
Sbjct: 240 DEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQ 297
Score = 45.1 bits (105), Expect = 0.044, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 31/50 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+ G+SKG+GFV + S E A KA+ ++NG ++ K +YV RK +R
Sbjct: 148 VDSSGQSKGYGFVQYDSEEAAQKAIEKLNGMLLNDKQVYVGPFVRKHERD 197
>gi|414588971|tpg|DAA39542.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 648
Score = 142 bits (358), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 119/309 (38%), Positives = 160/309 (51%), Gaps = 46/309 (14%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G S+G GFV F S E+A +A+TEMNG+++GSKPLYVALAQRKEDRKA L +Q+ Q
Sbjct: 351 DSNGVSRGSGFVAFKSAEDANRALTEMNGKMVGSKPLYVALAQRKEDRKAKLQAQFSQ-- 408
Query: 62 ANMRMQQMG-------QLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMR 114
MR M +F PG VP + Q Q FYG I PQ P MR
Sbjct: 409 --MRPVAMAPSVGPRMPMFPPG------VPGVGQ-QLFYGQPPPAFINPQ--QPLMPGMR 457
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSA------RPITGQSTMGPRGGGPMQA 168
P G +P F P GQ R A A P+ GQ + PRGG +
Sbjct: 458 PGGP-------MPNFM-MPMVQQGQQPQRPAGRRAGGMQQPMPMGGQQQVFPRGGRGYRY 509
Query: 169 PGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
P + G + G P ++GG+ A Q V + +T LA
Sbjct: 510 PTGRGMPDPGMHSVG--------AVMPPSYEMGGMPMREAAPQPVPIGA----LATALAN 557
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A P +Q+ MLGE L+PL++++ E A K+TGMLLE+D E+L++LE ++LK+KV EA+
Sbjct: 558 APPDQQRLMLGENLYPLVEQLEREQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAME 617
Query: 289 VLQAHQAKQ 297
VL++ Q Q
Sbjct: 618 VLRSAQHLQ 626
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 41/152 (26%), Positives = 75/152 (49%), Gaps = 13/152 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+S+ FGFV F + + A +AV E+NG+I K LYV AQ+K +R+ L ++ + +
Sbjct: 248 DSDGKSRCFGFVNFENADAAAQAVQELNGKIFNDKELYVGRAQKKSEREMELKEKFEKNV 307
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQ-PRWAAAPQMRPSGQTA 120
Q++ + FQ +T Y L + ++ ++ + + MR S +
Sbjct: 308 -----QEVAEKFQ--NTNLY----LKNLEENIDDEKLRELFAEYGNITSCKVMRDSNGVS 356
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
+G F+SA A+ T + G + ++P+
Sbjct: 357 RG-SGFVAFKSAEDANRALTEMNGKMVGSKPL 387
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 29/46 (63%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
G S+G+GFV F E A A+ ++NG +I K ++V RK+DR+
Sbjct: 160 GESRGYGFVQFEKDESAQSAIDKLNGMLINDKKVFVGPFVRKQDRE 205
>gi|356576101|ref|XP_003556172.1| PREDICTED: polyadenylate-binding protein 5-like isoform 1 [Glycine
max]
Length = 652
Score = 141 bits (355), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 111/305 (36%), Positives = 155/305 (50%), Gaps = 35/305 (11%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +GRSKG GFV FS+PEEA+KA+ EMNG++IG KPLYVA+AQRKE+RKAHL +Q+ Q
Sbjct: 351 IDSNGRSKGSGFVSFSTPEEASKALNEMNGKLIGRKPLYVAVAQRKEERKAHLQAQFAQI 410
Query: 61 IANMRMQQMGQ---LFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSG 117
A M + L+ PG+ P L Q +YG + PQP
Sbjct: 411 RAPGGMAPLPAGIPLYHPGA------PRLAPQQLYYGQGTPGFMPPQP------------ 452
Query: 118 QTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAA 177
GF Q R I ++ + GQ T R G Q +
Sbjct: 453 ---AGFSFQQQILPGMRPGVAPNFIMPYHLQRQGQLGQRTGVRRNGNFQQVQQNQMLHRN 509
Query: 178 GRQTGGY--NKYPVRNPGTQPQAQIGGIQP---AAAGVQAVHVQGQEP--LTSTM---LA 227
Q Y N +P P +G + P +GV A Q P L++T+ LA
Sbjct: 510 SNQGFRYMPNGRNGMDPSLVPHGLMGPMMPMPFDGSGVTAAPNDNQRPGALSTTLASALA 569
Query: 228 AAQPQEQKQMLGERLFPLIQRMYP-ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
+A P+ Q+ MLGE L+PL++R+ P + K+TGMLLE+D +E++ ++E E LK+KV EA
Sbjct: 570 SATPENQRMMLGEHLYPLVERLAPNQYTAKVTGMLLEMDQSEVINLIESPEDLKTKVSEA 629
Query: 287 VAVLQ 291
+ VL
Sbjct: 630 MQVLH 634
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 43/72 (59%), Gaps = 2/72 (2%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ-RI 61
+G+S+ FGFV F +P+ A AV +NG I + + LYV AQRK +R+A L ++ Q RI
Sbjct: 250 NGKSRCFGFVNFQNPDSAAAAVERLNGTTINNDRVLYVGRAQRKAEREAELKAKIEQERI 309
Query: 62 ANMRMQQMGQLF 73
+ Q L+
Sbjct: 310 SRYEKLQGANLY 321
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+ G+SKG+GFV F + E A A+ +NG +I K +YV L R+++R+
Sbjct: 156 LDSSGQSKGYGFVQFDNEEAAQNAIKRLNGMLINDKQVYVGLFIRRQERE 205
>gi|320167378|gb|EFW44277.1| poly A binding protein [Capsaspora owczarzaki ATCC 30864]
Length = 662
Score = 140 bits (354), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 119/319 (37%), Positives = 149/319 (46%), Gaps = 41/319 (12%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS--KPLYVALAQRKEDRKAHLASQYMQ 59
E G+S+GFGF+CFSS EEATKAVTEMNG+ I KPLYVALAQR EDR+A LA+ + Q
Sbjct: 362 DEKGKSRGFGFICFSSAEEATKAVTEMNGQTIQGFPKPLYVALAQRAEDRRAQLAAHFAQ 421
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYG--PTQMTQIRPQP--RWAAAPQMRP 115
+ NM + G G G + PQ FY P + PQ R A P P
Sbjct: 422 QRGNMGGRMAG-----GVIAGMPPQYMAGPQMFYAGVPQNRGMVYPQNVMRRGAWPANVP 476
Query: 116 SGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVS 175
G A P F + P Q V R A ++R PR G P
Sbjct: 477 VGVAAGARPGFGPFMAVP-----QGVPRQAGNNSR----GGNRAPRAGAPGMINQQFPQQ 527
Query: 176 A---------------AGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEP 220
AG+ G + G + I P AG Q P
Sbjct: 528 QQPQQPQQPQQQQSLRAGQAASGAPRQQGAQQGAGARQAI----PKTAGRQGASATAPAP 583
Query: 221 LTSTM--LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
+ L+ QK++LGE LFPLI +LAGKITGMLLE+DN ELL+++ ++
Sbjct: 584 SDERLANLSQFDLATQKRVLGETLFPLIAATQADLAGKITGMLLEMDNTELLHLISVPDA 643
Query: 279 LKSKVEEAVAVLQAHQAKQ 297
L KV+EAV VLQ H A+
Sbjct: 644 LAEKVQEAVTVLQTHGAQN 662
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 42/64 (65%), Gaps = 4/64 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY---- 57
S+D +SKGFGFVC+ E+A AV +NG + K L+VA AQ+K +R+A L +Y
Sbjct: 259 SDDDKSKGFGFVCYEKVEDAQAAVNALNGTELAGKTLFVARAQKKAEREAELKQRYDALR 318
Query: 58 MQRI 61
++RI
Sbjct: 319 LERI 322
Score = 37.4 bits (85), Expect = 8.2, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 32/49 (65%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
++++ SKG+GFV + + E A A+ ++NG +I K ++V + +++R
Sbjct: 165 VTDENGSKGYGFVHYETQEAAETAIAKVNGMVINGKQVFVGIFVPRKER 213
>gi|393216848|gb|EJD02338.1| polyadenylate binding protein [Fomitiporia mediterranea MF3/22]
Length = 701
Score = 140 bits (353), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 123/324 (37%), Positives = 161/324 (49%), Gaps = 28/324 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVC+SSPEEATKAV EMN +++GSKPLYV+ AQR+E R+ L SQ R
Sbjct: 374 DEKGTSKGFGFVCYSSPEEATKAVAEMNNKMLGSKPLYVSPAQRREVRRQQLESQIAAR- 432
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRF--------YGPTQMTQIRPQPRWAAAPQ- 112
N RMQQ P + + P P + YG Q + P+PR+A Q
Sbjct: 433 NNFRMQQAAAAGIPNAYLNGPIYYPPGPGGYPQGRGMMGYGGPQPGIMPPRPRYAPNGQG 492
Query: 113 --MRPSGQT-AQGFPNIPQFRSAPRASTGQT-----VIRGANMSARPITGQSTMGPRGGG 164
M P GQ QG+ +P + G T + P + P G
Sbjct: 493 MPMPPYGQGPPQGYGPVPSYGPRGGPRGGPTNASRVGPGQSPPGPGPAPLRGGPAPNGAS 552
Query: 165 --PMQAPGPASV-------SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHV 215
P PGP+ V A + Y+K V P P GG A G +A
Sbjct: 553 VRPSVPPGPSVVPNRVPPAGAPAPRPQAYSKAGVPPPRGAPAPVQGGPATPATGAEASAG 612
Query: 216 QGQEP-LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
+ P +T LAAA P ++KQ+LGE L+ I M ELAGKITGMLLE+++ EL+ +L+
Sbjct: 613 EADVPQITPQALAAATPMQRKQLLGEALYMKIVLMEEELAGKITGMLLEMEDDELMGLLD 672
Query: 275 HNESLKSKVEEAVAVLQAHQAKQA 298
E+L KV EA+AVL K++
Sbjct: 673 SQEALTGKVNEAIAVLNDFAVKES 696
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 41/68 (60%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRS+GFGFV + + E A A+ +NG ++ K ++V K++R+AH+ Q Q
Sbjct: 178 DENGRSRGFGFVHYDTAEAADTAIKAVNGMLLNDKKVFVGHYISKKERQAHIDEQKSQ-F 236
Query: 62 ANMRMQQM 69
N+ ++ +
Sbjct: 237 TNLYVKNL 244
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 33/58 (56%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+G+SKGFGFV F E A AV ++ + K L+V AQ+K +R+ L Y Q
Sbjct: 271 DEEGKSKGFGFVNFKDHESAQAAVDALHDTELNGKKLFVTRAQKKAEREEELRKSYEQ 328
>gi|239615396|gb|EEQ92383.1| polyadenylate-binding protein [Ajellomyces dermatitidis ER-3]
gi|327356743|gb|EGE85600.1| polyadenylate-binding protein [Ajellomyces dermatitidis ATCC 18188]
Length = 783
Score = 140 bits (352), Expect = 9e-31, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 168/351 (47%), Gaps = 89/351 (25%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EA+KAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 429 GKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQAR-NTI 487
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI--------------RPQPRWAAA 110
R QQ+ + G P + QP +Y P Q I +P
Sbjct: 488 RQQQV------AAAAGMSQPFM-QPAVYYPPGQQGFIPANAGQRGGMAFGQQPGMVLPGM 540
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGAN-----------MSARPITGQSTMG 159
P RP GQ A GFP GQ RG N M A+ + + G
Sbjct: 541 PGGRP-GQFAGGFP-------------GQQGGRGINPNQQLPPNAFGMGAQGLPMGALQG 586
Query: 160 PRGGGP-----------------------MQAPG-----PASVSAAGRQTGGYNKYPVRN 191
P GG P QAPG P+ +A G + GG + +
Sbjct: 587 P-GGLPNGLSYPQAIAQVQASFGRGGGGRGQAPGMQGMPPSMGNAPGMRAGG--QAFTQG 643
Query: 192 PGTQPQAQIGGIQPAAAGVQAVHVQGQEP---------LTSTMLAAAQPQEQKQMLGERL 242
G PQ G +P AG A QG P L L+AA P +QKQMLGE +
Sbjct: 644 RGMPPQQ--GVARPGQAGRGAGPAQGMPPRDESAGGPTLNLQALSAAPPAQQKQMLGEAI 701
Query: 243 FPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+P IQ PELAGKITGMLLE+DNAELL +++ +L++KV+EA+ V +
Sbjct: 702 YPKIQAQQPELAGKITGMLLEMDNAELLSLVDDEAALRAKVDEAINVYDEY 752
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
SE G+S+GFGFV F E A AV E+N + + LYV AQ+K +R+ L Q+
Sbjct: 271 SETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQH 326
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 177 DEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 236
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 237 NVYVKNL 243
>gi|261199248|ref|XP_002626025.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
gi|239594233|gb|EEQ76814.1| polyadenylate-binding protein [Ajellomyces dermatitidis SLH14081]
Length = 783
Score = 140 bits (352), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 130/351 (37%), Positives = 168/351 (47%), Gaps = 89/351 (25%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EA+KAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 429 GKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQAR-NTI 487
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI--------------RPQPRWAAA 110
R QQ+ + G P + QP +Y P Q I +P
Sbjct: 488 RQQQV------AAAAGMSQPFM-QPAVYYPPGQQGFIPTNAGQRGGMAFGQQPGMVLPGM 540
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGAN-----------MSARPITGQSTMG 159
P RP GQ A GFP GQ RG N M A+ + + G
Sbjct: 541 PGGRP-GQFAGGFP-------------GQQGGRGINPNQQLPPNAFGMGAQGLPMGALQG 586
Query: 160 PRGGGP-----------------------MQAPG-----PASVSAAGRQTGGYNKYPVRN 191
P GG P QAPG P+ +A G + GG + +
Sbjct: 587 P-GGLPNGLSYPQAIAQVQASFGRGGGGRGQAPGMQGMPPSMGNAPGMRAGG--QAFTQG 643
Query: 192 PGTQPQAQIGGIQPAAAGVQAVHVQGQEP---------LTSTMLAAAQPQEQKQMLGERL 242
G PQ G +P AG A QG P L L+AA P +QKQMLGE +
Sbjct: 644 RGMPPQQ--GVARPGQAGRGAGPAQGMPPRDESAGGPTLNLQALSAAPPAQQKQMLGEAI 701
Query: 243 FPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+P IQ PELAGKITGMLLE+DNAELL +++ +L++KV+EA+ V +
Sbjct: 702 YPKIQAQQPELAGKITGMLLEMDNAELLSLVDDEAALRAKVDEAINVYDEY 752
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
SE G+S+GFGFV F E A AV E+N + + LYV AQ+K +R+ L Q+
Sbjct: 271 SETGKSRGFGFVNFVKHESAAAAVEELNDKEFKGQKLYVGRAQKKHEREEELRKQH 326
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 24/80 (30%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 177 DEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 236
Query: 55 SQYMQRI-ANMRMQQMGQLF 73
+ Y++ + + ++ +LF
Sbjct: 237 NVYVKNLDTKVTNEEFRELF 256
>gi|441632342|ref|XP_004089684.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 165
Score = 139 bits (351), Expect = 1e-30, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 79/90 (87%)
Query: 213 VHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYM 272
V VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQRM+ LAGKITGMLLEI N+ELL+M
Sbjct: 67 VQVQGQEPLTASMLAAAHPQEQKQMLGERLFPLIQRMHSNLAGKITGMLLEIHNSELLHM 126
Query: 273 LEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LE ESL SKV+EAVAVL+AH AK+ A +K
Sbjct: 127 LEFPESLHSKVDEAVAVLRAHHAKKEAAQK 156
>gi|242041385|ref|XP_002468087.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
gi|241921941|gb|EER95085.1| hypothetical protein SORBIDRAFT_01g039310 [Sorghum bicolor]
Length = 654
Score = 139 bits (349), Expect = 2e-30, Method: Compositional matrix adjust.
Identities = 111/310 (35%), Positives = 154/310 (49%), Gaps = 45/310 (14%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G S+GFGFVC+S+PEEA V M G + KPLYVA+ QRKE+R+A L + Q
Sbjct: 355 MRDDKGISRGFGFVCYSTPEEAKSVVNSMRGVMFFGKPLYVAIFQRKEERRAKLQQHFAQ 414
Query: 60 RIANMRMQQMGQLFQPGSTGGYFV-PTLPQPQRFYGPTQMTQIRP----QPRWAAAPQMR 114
+A M + + G YF P PQ GP + + P W P M
Sbjct: 415 -LARM-VGPTNSMIPTGYPQVYFAHPNAHIPQ---GPPRHGFVYPPMGLSHEWR--PNMF 467
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
PS PN+PQ I M P +S G GG M P P +V
Sbjct: 468 PSA------PNLPQ-------------IHSPMMPNSPRHYRSNRGRMGGNMM--PLPHAV 506
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQA--VHVQGQEPLT------STML 226
A T P + + P+ + + + V A + + +P++ S+ L
Sbjct: 507 HAMNYVTHAQ---PTKEFMSMPRQRFNHSKYFSNDVMANGLAIHQSDPVSTMNDSFSSYL 563
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
A+A P EQK +LG RL+PL++R PELA KITGMLLE+DN+E++ +L +E L KV+E
Sbjct: 564 ASAPPAEQKNLLGNRLYPLVERHQPELASKITGMLLELDNSEVVTLLCSSEMLSVKVDEC 623
Query: 287 VAVLQAHQAK 296
V +LQA + K
Sbjct: 624 VQLLQATKPK 633
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 33/58 (56%), Positives = 41/58 (70%), Gaps = 5/58 (8%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG S GFGFV F +PE A KA M+G ++GSK LYVA AQ+KE+RK QY+QR+
Sbjct: 256 DGSSLGFGFVSFQNPESAIKAQETMHGMLLGSKALYVARAQKKEERK-----QYLQRL 308
Score = 50.8 bits (120), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 41/81 (50%), Gaps = 12/81 (14%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA---------- 51
+EDG S+G+GFV F+S E A +A+ +NG + + L+VA +K +R A
Sbjct: 164 NEDGTSRGYGFVQFASQESADEAIGNLNGSLFNDRKLHVATFIKKSERSANNDDKFTNLY 223
Query: 52 --HLASQYMQRIANMRMQQMG 70
HL + + ++ Q G
Sbjct: 224 MKHLDDDITEELVKLKFSQFG 244
>gi|441674304|ref|XP_004092504.1| PREDICTED: polyadenylate-binding protein 1-like [Nomascus
leucogenys]
Length = 146
Score = 138 bits (348), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 81/90 (90%), Gaps = 1/90 (1%)
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
A+HVQGQEPLT++MLA A PQEQKQMLGE+LFPL Q M+P LAGKITGMLLEIDN+ELL+
Sbjct: 47 AIHVQGQEPLTASMLAFA-PQEQKQMLGEQLFPLSQAMHPTLAGKITGMLLEIDNSELLH 105
Query: 272 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
MLE ESL SKV+EAVAVLQAHQAK+AA K
Sbjct: 106 MLESPESLHSKVDEAVAVLQAHQAKEAAQK 135
>gi|290981403|ref|XP_002673420.1| polyadenylate binding protein [Naegleria gruberi]
gi|284087003|gb|EFC40676.1| polyadenylate binding protein [Naegleria gruberi]
Length = 571
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 112/294 (38%), Positives = 142/294 (48%), Gaps = 57/294 (19%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS++ +S+GFGFVCF +PE A KA+TEM+G +IGSKPLYV AQ KE R++ L +QY R
Sbjct: 329 MSDNKQSRGFGFVCFKTPEAANKALTEMSGHMIGSKPLYVNFAQPKELRRSQLEAQYNAR 388
Query: 61 IA-NMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT 119
M Q M Q F P G F P +QI+ PRW R S Q
Sbjct: 389 KQPQMIPQMMPQFFIPAQ--GAF------------PPPGSQIK--PRWQPVAGGRQSNQN 432
Query: 120 AQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGR 179
G RG G S G RGG A AGR
Sbjct: 433 RGGMS------------------RG---------GSSQRGARGGNANTAKN------AGR 459
Query: 180 QTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLG 239
YN P QPQ Q A QA Q LT+ LA Q+QKQ+LG
Sbjct: 460 IK--YNNNARNQPREQPQQTTPNTQEAQT-TQAPSDQ----LTAEYLAKLSEQDQKQLLG 512
Query: 240 ERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
ERLFPL+ P+ A KITGMLL+++ +++L ++E ++L K++EAV VL H
Sbjct: 513 ERLFPLVHLREPKNAPKITGMLLDMEVSDILTLIESTDALNQKIKEAVKVLVEH 566
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 37/59 (62%), Gaps = 1/59 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G SK FGF+ F+ A A+ EMN + +K L+V AQ+K +R+A L +Y Q++
Sbjct: 229 ENGASKEFGFINFADHASALIAIDEMNEKDFKNKKLFVGRAQKKNERRAKL-KEYFQKL 286
>gi|297845300|ref|XP_002890531.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
gi|297336373|gb|EFH66790.1| PAB3 binding protein 3 [Arabidopsis lyrata subsp. lyrata]
Length = 659
Score = 138 bits (347), Expect = 3e-30, Method: Compositional matrix adjust.
Identities = 108/306 (35%), Positives = 153/306 (50%), Gaps = 49/306 (16%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ----- 59
G S+GFGFV +S+PEEA +A++EMNG++IG KPLY+ALAQRKEDR+AHL + + Q
Sbjct: 369 GLSRGFGFVAYSNPEEALRALSEMNGKMIGKKPLYIALAQRKEDRRAHLQALFSQIRAPG 428
Query: 60 ------RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQM 113
M Q G G VP+ P F QP++ P M
Sbjct: 429 PMSGFHHPPGGPMSGPPQHMYVGQNGASLVPSQPIGYGF-----------QPQF--MPGM 475
Query: 114 RPS---GQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
RP G +P Q ++ PR RGA I Q M PG
Sbjct: 476 RPGSGPGNFVMPYPLQRQPQTGPRMG----FRRGATNMQHHIQQQQLMNRN-----PTPG 526
Query: 171 PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPL-----TSTM 225
++ AG G + + PQ + I P ++ Q + PL ++
Sbjct: 527 MRYMNGAGNGRNGMD-------SSVPQGILPPIMPLPIDASSISHQ-KAPLLPISKLTSS 578
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A P ++ +MLGE+L+PL++R P K+TGMLLE+D AE+L+++E E+LKSKV E
Sbjct: 579 LASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALKSKVSE 638
Query: 286 AVAVLQ 291
A+ VL+
Sbjct: 639 ALDVLR 644
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+ G S+ FGFV F E A AV +MNG +G LYV AQ+K +R+ L ++ Q R
Sbjct: 263 DQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
Query: 61 IANMRMQQMGQLF 73
I Q L+
Sbjct: 323 INRFEKSQGANLY 335
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
M GRSKG+GFV F E A A+ ++NG ++ K ++V R+++R
Sbjct: 169 MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
>gi|296863321|pdb|2RQG|B Chain B, Structure Of Gspt1ERF3A-Pabc
gi|296863323|pdb|2RQH|B Chain B, Structure Of Gspt1ERF3A-Pabc
Length = 83
Score = 138 bits (347), Expect = 4e-30, Method: Compositional matrix adjust.
Identities = 69/83 (83%), Positives = 78/83 (93%)
Query: 217 GQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHN 276
GQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE
Sbjct: 1 GQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESP 60
Query: 277 ESLKSKVEEAVAVLQAHQAKQAA 299
ESL+SKV+EAVAVLQAHQAK+AA
Sbjct: 61 ESLRSKVDEAVAVLQAHQAKEAA 83
>gi|357154719|ref|XP_003576878.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 653
Score = 137 bits (346), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 114/305 (37%), Positives = 154/305 (50%), Gaps = 36/305 (11%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G S+G GFV F S E+A++A+ EMN +++GSKPLYVALAQRKEDRKA L +Q+ Q
Sbjct: 350 DSNGASRGSGFVAFKSAEDASRALAEMNNKMVGSKPLYVALAQRKEDRKARLQAQFSQ-- 407
Query: 62 ANMRMQQMG-------QLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AA 110
+R M +F PG VP + Q Q FYG I PQP +
Sbjct: 408 --LRPVPMAPTVGPRMAMFPPG------VPGVGQ-QLFYGQPPPAFINPQPGFGFQQPLM 458
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAP- 169
P MRP + Q P+ +G+ G + P+ GQ M RGG + P
Sbjct: 459 PGMRPGAPMPNFMMPMVQQGQQPQRPSGRRAGTGGMQQSMPM-GQQQMIARGGRGYRYPT 517
Query: 170 GPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAA 229
G A GG P G P G QP G A T LA A
Sbjct: 518 GRGMPDPAMHGVGGGMPSPYE-IGGMPMRDAGASQPVPIGALA-----------TALANA 565
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
P +Q+ MLGE L+PL+ ++ + A K+TGMLLE+D E+L++LE ++LK+KV EA+ V
Sbjct: 566 PPDQQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEV 625
Query: 290 LQAHQ 294
L++ Q
Sbjct: 626 LRSAQ 630
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DGRSK FGFV F SP+EA AV ++NG+ K YV AQ+K +R+ L ++ + +
Sbjct: 249 DGRSKCFGFVNFESPDEAALAVQDLNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNL 306
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
G SKG+GFV + E A A+ ++NG ++ K +YV RK++R
Sbjct: 159 GESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFIRKQERD 204
>gi|402225283|gb|EJU05344.1| polyadenylate binding protein [Dacryopinax sp. DJM-731 SS1]
Length = 716
Score = 137 bits (345), Expect = 5e-30, Method: Compositional matrix adjust.
Identities = 120/330 (36%), Positives = 157/330 (47%), Gaps = 58/330 (17%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR- 60
E G SKGFGFVCFSSP+EAT+A++EMN +I+G+KPLYVALAQRK+ RK L SQ QR
Sbjct: 392 DEKGTSKGFGFVCFSSPDEATRAMSEMNNKIVGTKPLYVALAQRKDVRKQQLESQIAQRN 451
Query: 61 ----------IANMRMQQMGQLFQPGSTG---------GYFVPTLPQPQRF-YGPTQ--- 97
I NM +QP + G GY P P P R Y P Q
Sbjct: 452 NQLRLAAAQGIPNMPYGAAPMFYQPAAAGYPPGQRPVMGY--PPAPGPARMRYAPGQQMA 509
Query: 98 ------MTQIRPQPRWAAAPQMRP-------SGQTAQGFPNIPQFRSAPRASTGQTVIRG 144
P P P RP +P SAPR + V+ G
Sbjct: 510 GMAVPPPYGQPPVPYGMGTPYQRPRPVRQPGGPGGPGAPAPVP-LSSAPRGPSA-PVVTG 567
Query: 145 ANMSARPITGQSTMGPRGGGPMQAPG---PASVSAAGRQTGGYNKYPVRNPGTQPQAQIG 201
N + P+ G GGP+ G PA Q GG + NP T+
Sbjct: 568 GNGTRLPMAGP-------GGPVTGAGAGRPAPTPNGVPQNGGQAQAYKLNPNTRNAT--- 617
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
V + P+ + +LA A EQKQ+LGE ++ I M PELAGKITGML
Sbjct: 618 ----TTGQATTGPVSTEPPINAALLANASAGEQKQILGEAIYMKIHAMQPELAGKITGML 673
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
LE++ EL++++E ++L++KV EA+ VL+
Sbjct: 674 LEMETTELIHLIETPDALQNKVAEAITVLE 703
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 39/58 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+G SKGFGFV F + E+A +AV E++ + I KP++V AQ+K +R+ L QY Q
Sbjct: 289 DEEGNSKGFGFVNFENHEDAQRAVEELDNKEIHGKPVFVGRAQKKSEREEELRKQYEQ 346
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 19/67 (28%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
+ G SKG+GFV + S E A A+ +NG ++ K ++V +++R K+H
Sbjct: 196 DDSGLSKGYGFVHYDSNEAAEAAIKAVNGMLLNDKKVFVGQHISRKERQSKIDEMKSHFT 255
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 256 NLYVKNL 262
>gi|320581683|gb|EFW95902.1| Poly(A) binding protein [Ogataea parapolymorpha DL-1]
Length = 629
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 113/309 (36%), Positives = 156/309 (50%), Gaps = 54/309 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ + G+SKGFGFVC+SSPEEATKA+TEM+ R++ KPLYVALAQRKE R++ L SQ +Q
Sbjct: 364 LDDAGKSKGFGFVCYSSPEEATKAITEMHQRMVAGKPLYVALAQRKEVRRSQL-SQQIQA 422
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
MRMQQ G G + P FYG P P G A
Sbjct: 423 RNQMRMQQAA---AQGGMGQFVAPM------FYGQN--------------PGFLPPG--A 457
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPIT-GQSTMGPRGGGPMQAPGPASVSAAGR 179
+G P +AP P++ GQ +GP G P P +
Sbjct: 458 RGAP-----FAAPGQQMMMQQGMPRPGQGVPVSPGQFRVGPNG-----QPVPMYMQPV-- 505
Query: 180 QTGGYNKYPVRNPGTQPQAQIG-----GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
+N+YP G PQ + G QP AG + G P + +L P++Q
Sbjct: 506 ----FNEYP--QNGRLPQQRYYQGGRPGQQPPQAGPRGKREDGAVPSLAQVLPQFPPEQQ 559
Query: 235 KQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
K+MLGE L+PLI + PE AGKITGM+LE+DN ++L +LE + S+ EEA++
Sbjct: 560 KRMLGEELYPLIVATGKAQDPEAAGKITGMMLEMDNQQILALLEDRDLFNSQFEEALSAY 619
Query: 291 QAHQAKQAA 299
+ ++ K+A+
Sbjct: 620 EEYKNKEAS 628
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+S+GFGFV F E+A KAV E+N + I + LYV AQ+K +R L QY
Sbjct: 262 DESGKSRGFGFVNFEKHEDAVKAVEELNNKDIDGQKLYVGRAQKKSERMESLKHQY 317
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 27/91 (29%), Positives = 45/91 (49%), Gaps = 9/91 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK-------AHLA 54
E+G SKGFGFV + E A A+ +NG ++ +YV K+DR+ A+
Sbjct: 169 DENGNSKGFGFVHYEESESAKAAIENVNGMLLNDHEVYVGPHLAKKDRQSKMRELIANFT 228
Query: 55 SQYMQRIA-NMRMQQMGQLFQP-GSTGGYFV 83
+ Y++ I N ++ + F P G+ F+
Sbjct: 229 NVYVKNINLNWDEDKLRETFSPFGTISSIFL 259
>gi|255572313|ref|XP_002527095.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223533518|gb|EEF35258.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 657
Score = 137 bits (345), Expect = 6e-30, Method: Compositional matrix adjust.
Identities = 106/298 (35%), Positives = 151/298 (50%), Gaps = 25/298 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ G SKG GFV FS+PEEA++A+ EMNG++IG KPLYVA+AQRKE+RKA L + +
Sbjct: 361 LDHQGVSKGSGFVAFSTPEEASRALKEMNGKMIGRKPLYVAIAQRKEERKARLQAHFALV 420
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
A + + PG G P L Q ++G P M P
Sbjct: 421 RAPGALAPLPSGI-PGYNAG--APRLAPQQLYFG-------------QGTPGMMPPQHAG 464
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQ 180
GF Q ++ R + G I ++ + GQ RGG P Q +
Sbjct: 465 YGFQQ--QILTSMRPAVGPNFIIPYHLQRQGQPGQRMGMRRGGNPQQMQQQQQLLHRNNN 522
Query: 181 TGGYNKYPVRNPGTQ---PQAQIGGIQPAAAGVQAVHVQGQEPLT-STM---LAAAQPQE 233
G RN G PQ G + P V V Q P+T ST+ LA+A P++
Sbjct: 523 QGLRYVGNARNSGNSSVVPQGLAGPMVPLPFEVSGASVDVQPPVTISTLASALASATPEK 582
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
+ +MLG+ L+PL++R+ P+ K+TGMLLE+D E+L+++E +SLK KV EA+ VL+
Sbjct: 583 RTEMLGDHLYPLVERLQPDHVAKVTGMLLEMDQTEVLHLIESPDSLKKKVAEAMQVLR 640
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 40/66 (60%), Gaps = 2/66 (3%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRII-GSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
G+S+GFGFV F P+ A AV ++NG K YV AQRK +R+A L +++ Q N
Sbjct: 261 GKSRGFGFVNFQDPDSAAAAVEKLNGTTAHDDKAWYVGRAQRKSEREAELKAKFEQE-RN 319
Query: 64 MRMQQM 69
R +++
Sbjct: 320 SRYERL 325
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 32/49 (65%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+ +G+SKG+GFV F + E A +A++ ++G + K +YV R+++R
Sbjct: 166 VDSNGQSKGYGFVQFENEESAERAISFLDGMCLNDKQVYVGFFVRQQER 214
>gi|367040559|ref|XP_003650660.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
gi|346997921|gb|AEO64324.1| hypothetical protein THITE_2110364 [Thielavia terrestris NRRL 8126]
Length = 777
Score = 137 bits (344), Expect = 8e-30, Method: Compositional matrix adjust.
Identities = 122/327 (37%), Positives = 153/327 (46%), Gaps = 39/327 (11%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P++ATKAV EMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 428 GKSKGFGFVCFSNPDDATKAVAEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQAR-NQL 486
Query: 65 RMQQMGQ-------------LFQPGSTGGYFVPT---LPQPQRFYG--------PTQMTQ 100
RMQQ + PG G+ P +P PQ G P Q
Sbjct: 487 RMQQAAAQAGLPQQYMQAPVYYAPGQQPGFLPPGGRGMPFPQGGIGMPAVQGGRPGQFPP 546
Query: 101 IRPQPRWAAAPQ---MRPSGQTAQGF---PNIPQF-RSAPRASTGQTVIRGANMSARPIT 153
Q PQ + P GQ G PN PQF + + +
Sbjct: 547 YAQQGGRGGMPQQLPIYPLGQFPPGTYPQPNNPQFLAAIQQVQQQAAALGTGRGGPGGRG 606
Query: 154 GQSTMGPRG--GGPMQAPGPASVSAAGR-QTGGYNKYPVRNPGTQPQAQIGGIQPAAAGV 210
Q P+G GGP G A GR Q G N G A GG+ PA
Sbjct: 607 MQGMPIPQGMPGGP----GLAGYPPNGRPQNGNMAGRGGPNRGGSFAAGRGGVPPAGPVG 662
Query: 211 QAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELL 270
+ L S + A QKQ+LGE LFP IQ + PELAGKITGMLLE+DN EL+
Sbjct: 663 ATGELSATALLQSQLAATTNIHAQKQILGENLFPKIQAIQPELAGKITGMLLEMDNNELV 722
Query: 271 YMLEHNESLKSKVEEAVAVLQAHQAKQ 297
++LE +L +KV EA+AV + Q
Sbjct: 723 HLLEDEAALLAKVNEAMAVYDEYVKSQ 749
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+S+GFGFV F++ A KAV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 279 DNEGKSRGFGFVNFTTHASAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSY 334
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 186 DENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFT 245
Query: 55 SQYMQRIAN-MRMQQMGQLF 73
+ Y++ I + + ++ +LF
Sbjct: 246 NVYVKNINHEVTEEEFRELF 265
>gi|449438385|ref|XP_004136969.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
gi|449495630|ref|XP_004159899.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 649
Score = 137 bits (344), Expect = 9e-30, Method: Compositional matrix adjust.
Identities = 122/324 (37%), Positives = 162/324 (50%), Gaps = 63/324 (19%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G S+G GFV FSSPEEA +A+ EMNGR+I SKPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 347 NGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRRARLQAQFSQ---- 402
Query: 64 MRMQQMGQ----------LFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----A 109
MQ M ++ PG P + Q Q FYG T I QP +
Sbjct: 403 --MQPMAMASSVAPRGMPMYPPGG------PGIGQ-QIFYGQAPPTIISSQPGFGYQQQL 453
Query: 110 APQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGA-NMSARPI-TGQSTMGPRG----- 162
P MRP G F +P + + GA + +P+ Q M PRG
Sbjct: 454 MPGMRPGGGPMPNF-FVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRY 512
Query: 163 ----GGP-MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQG 217
G P + PG A GG P G P+ + QP G A
Sbjct: 513 PPGRGLPDLPMPGVA---------GGMFSVPYEMGGMPPRDAVHP-QPVPVGALA----- 557
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
+ LA A P +Q+ MLGE L+PL++++ P+ A K+TGMLLE+D E+L++LE E
Sbjct: 558 ------SALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPE 611
Query: 278 SLKSKVEEAVAVLQ--AHQAKQAA 299
+LK+KV EA+ VL+ A Q+ AA
Sbjct: 612 ALKAKVAEAMEVLRSVAQQSGNAA 635
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+SK FGFV F + ++A ++V +NG+ + K YV AQ+K +R+ L S++ Q +
Sbjct: 244 EGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSV 301
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV F + E A KA+ ++NG ++ K ++V RK++R++
Sbjct: 154 GQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERES 200
>gi|115475838|ref|NP_001061515.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|35215045|dbj|BAC92404.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|35215184|dbj|BAC92537.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
gi|113623484|dbj|BAF23429.1| Os08g0314800 [Oryza sativa Japonica Group]
gi|215694402|dbj|BAG89395.1| unnamed protein product [Oryza sativa Japonica Group]
gi|258644698|dbj|BAI39945.1| putative poly(A)-binding protein [Oryza sativa Indica Group]
Length = 660
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 119/322 (36%), Positives = 161/322 (50%), Gaps = 64/322 (19%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G SKG GFV F S E+A++A+ MNG++IGSKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 358 NGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQRKEERRARLQAQFSQ---- 413
Query: 64 MRMQQM-------GQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQ 112
MR M ++ PG VP + Q Q FYG + PQP + P
Sbjct: 414 MRPMVMPPSVAPRMPMYPPG------VPGVGQ-QLFYGQPPPAFVNPQPGFGFQQHLIPG 466
Query: 113 MRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSA------RPI-TGQSTMGPRG--G 163
MRPS IP F P GQ R A A +P+ G M PRG G
Sbjct: 467 MRPS------VGPIPNF-VMPMVQQGQQPQRPAGRRAGTGGIQQPMPMGHQQMLPRGSRG 519
Query: 164 GPMQAPGPASVSAAGRQTGGY-------NKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQ 216
G A G A R GG + P+ + G PQ IG + A
Sbjct: 520 GYRYASGRGMPDNAFRGVGGLVPSPYEMGRMPLSDAGAPPQVPIGALASA---------- 569
Query: 217 GQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHN 276
LA + P +Q+ MLGE L+PL+ ++ + A K+TGMLLE+D E+L+++E
Sbjct: 570 ---------LANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESP 620
Query: 277 ESLKSKVEEAVAVLQAHQAKQA 298
++LK+KV EA+ VL+ Q +QA
Sbjct: 621 DALKAKVAEAMEVLRNAQQQQA 642
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+S+ FGFV F +P++A +AV ++NG+ K YV AQ+K +R+ L ++ + I
Sbjct: 254 DGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNI 311
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
G SKG+GFV F E A A++++NG ++ K +YV RK++R+
Sbjct: 164 GESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERE 209
>gi|400234898|gb|AFP74112.1| poly-A binding protein, partial [Nicotiana benthamiana]
Length = 643
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/311 (37%), Positives = 159/311 (51%), Gaps = 46/311 (14%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G SKG GFV FS+PEEA++A++EMNG+++ SKPLYVALAQRKE+R+A L +Q+ Q M
Sbjct: 346 GVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ----M 401
Query: 65 RMQQMGQ-------LFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQM 113
R M ++ PG P L Q Q FYG + PQ + P M
Sbjct: 402 RPIAMASSVAPRMPMYPPGG------PGLGQ-QIFYGQPPPAMLPPQAGFGYQQQLVPGM 454
Query: 114 RPSGQTAQGF--PNIPQFRSAPRASTGQTVIRGANMSARPI-TGQSTMGPRGGGPMQAPG 170
RP G F P + Q + R + +P+ Q M PRG G PG
Sbjct: 455 RPGGGPMPNFFMPMVQQGQQGQRPGGRRGGAVPLQQGQQPVPLMQQQMFPRGRGYRYPPG 514
Query: 171 PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGG--IQPAAAGVQAVHVQGQEPLTSTMLAA 228
A GG + + IGG +QP G A T LA
Sbjct: 515 RGLPDGAFPGVGG-GMFSI-------PYDIGGRIVQPIPVGALA-----------TALAN 555
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A P EQ+ MLGE L+PL++++ PE A K+TGMLLE+D E+L++LE E+LK+KV EA+
Sbjct: 556 ASPTEQRTMLGENLYPLVEQLEPETAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAME 615
Query: 289 VLQAHQAKQAA 299
VL+ +Q++
Sbjct: 616 VLRNVSQQQSS 626
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
EDG+S+ FGFV F + E+A +AV +NG + +K +V AQ+K +R+ L ++ Q
Sbjct: 240 DEDGKSRCFGFVNFENAEDAARAVEALNGYKLDNKDWFVGRAQKKSEREMELKHRFEQ 297
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+ G+SKG+GFV + S E A KA+ ++NG ++ K +YV RK++R
Sbjct: 148 VDSSGQSKGYGFVQYDSDEAAQKAIEKLNGMLLNDKQVYVGPFVRKQERD 197
>gi|399217460|emb|CCF74347.1| unnamed protein product [Babesia microti strain RI]
Length = 679
Score = 136 bits (342), Expect = 1e-29, Method: Compositional matrix adjust.
Identities = 117/320 (36%), Positives = 156/320 (48%), Gaps = 48/320 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G S GFGFVCF SPE+AT AV+EM+ +++ +KPLYV LA+++E R L +Y +
Sbjct: 376 VDEHGASLGFGFVCFVSPEDATHAVSEMHLKLVHNKPLYVGLAEKREQRLNRLQMRY--K 433
Query: 61 IANMRMQQ-MGQL-----FQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMR 114
+ + R MG L P G VP +P ++ P P + M
Sbjct: 434 VGHNRDGMPMGMLPPHGMMPPMHMG---VPMMPVNGQYMYPNPNIH---GPNSSQQNAMM 487
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRG----GGPMQAPG 170
P Q P IP P RGANM P+ + MG RG P+Q G
Sbjct: 488 PYQWRHQYHPGIP-----PVGMQVPFNARGANMPV-PMRVYNPMGNRGVRGQNVPVQKLG 541
Query: 171 PASVSAAGRQTGGYNKYP-VRNPGTQPQAQIGGIQPAAAG---------VQAVHVQGQEP 220
A G G+ P RN Q+ PA AG V G++
Sbjct: 542 QNGDKAMG---DGFKFTPQARNRMEMVQSDHS--DPATAGNARAHARATATTSAVPGRDS 596
Query: 221 ---------LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
+T+ LAAA P QKQMLGE+LFP+I R PELAGK+TGM+LE+DN+ELL
Sbjct: 597 NDTTFQEAHITAATLAAAHPNMQKQMLGEKLFPIIARHNPELAGKVTGMMLEMDNSELLI 656
Query: 272 MLEHNESLKSKVEEAVAVLQ 291
+LE + L +K +EA+ VLQ
Sbjct: 657 LLESEKQLIAKADEAIRVLQ 676
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 20/48 (41%), Positives = 33/48 (68%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
E GRS+G+GFV F + AT+A+++ NG +G+K ++VA R+ +R
Sbjct: 163 DETGRSRGYGFVHFDTEANATRAISDANGMQLGNKKIFVAPFVRRSER 210
>gi|119619048|gb|EAW98642.1| hCG1811491 [Homo sapiens]
gi|440575985|emb|CCO13803.1| alternative protein RLIM [Homo sapiens]
Length = 146
Score = 135 bits (341), Expect = 2e-29, Method: Compositional matrix adjust.
Identities = 70/90 (77%), Positives = 80/90 (88%), Gaps = 1/90 (1%)
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
A+HVQGQEPLT +MLA+A PQEQKQMLGE LFPLIQ M+P LAGKITG+LLEIDN+ELL+
Sbjct: 47 AIHVQGQEPLTVSMLASA-PQEQKQMLGEWLFPLIQAMHPTLAGKITGVLLEIDNSELLH 105
Query: 272 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
ML+ ESL SKV+EAVAVLQAHQAK+ A K
Sbjct: 106 MLKSPESLHSKVDEAVAVLQAHQAKETAQK 135
>gi|7528270|gb|AAF63202.1|AF240679_1 poly(A)-binding protein [Cucumis sativus]
Length = 649
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 122/324 (37%), Positives = 161/324 (49%), Gaps = 63/324 (19%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G S+G GFV FSSPEEA +A+ EMNGR+I SKPLYVALAQRKEDR A L +Q+ Q
Sbjct: 347 NGISRGSGFVAFSSPEEAARALAEMNGRMIVSKPLYVALAQRKEDRIARLQAQFSQ---- 402
Query: 64 MRMQQMGQ----------LFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----A 109
MQ M ++ PG P + Q Q FYG T I QP +
Sbjct: 403 --MQPMAMASSVAPRGMPMYPPGG------PGIGQ-QIFYGQAPPTIISSQPGFGYQQQL 453
Query: 110 APQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGA-NMSARPI-TGQSTMGPRG----- 162
P MRP G F +P + + GA + +P+ Q M PRG
Sbjct: 454 MPGMRPGGGPMPNF-FVPMVQQGQQGQRSGGRRAGAIQQTQQPVPLMQQQMLPRGRVYRY 512
Query: 163 ----GGP-MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQG 217
G P + PG A GG P G P+ + QP G A
Sbjct: 513 PPGRGLPDLPMPGVA---------GGMFSVPYEMGGMPPRDAVHP-QPVPVGALA----- 557
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
+ LA A P +Q+ MLGE L+PL++++ P+ A K+TGMLLE+D E+L++LE E
Sbjct: 558 ------SALANATPDQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPE 611
Query: 278 SLKSKVEEAVAVLQ--AHQAKQAA 299
+LK+KV EA+ VL+ A Q+ AA
Sbjct: 612 ALKAKVAEAMEVLRSVAQQSGNAA 635
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 38/58 (65%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+SK FGFV F + ++A ++V +NG+ + K YV AQ+K +R+ L S++ Q +
Sbjct: 244 EGKSKCFGFVNFENADDAARSVEALNGKKVDGKEWYVGKAQKKSEREVELKSRFEQSV 301
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV F + E A KA+ ++NG ++ K ++V RK++R++
Sbjct: 154 GQSKGFGFVQFDTEEAALKAIEKLNGMLLNDKQVFVGPFLRKQERES 200
>gi|326526505|dbj|BAJ97269.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 162/318 (50%), Gaps = 49/318 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G +KG GFV F S E+AT+A+ MNG+++GSKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 359 DSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFSQMR 418
Query: 62 ANM------RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAP 111
M RM ++ PG VP + Q Q FYG + PQP + P
Sbjct: 419 PVMPPPVAPRM----PMYPPG------VPGMGQ-QLFYGQPPPAFVNPQPGYGFQQHMIP 467
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVIR------GANMSARPI-TGQSTMGPRG-- 162
MRP G +P F P GQ R GA +P+ G M PRG
Sbjct: 468 GMRP------GVAPMPNF-VMPMVQQGQQPQRPSGRRAGAGGMQQPMPMGHQQMVPRGGR 520
Query: 163 GGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
GG A G AA R GG + G G Q ++G A
Sbjct: 521 GGYRYASGRGMPEAAFRGVGGMAP-SLYEMGRMTPGDTGAPQQVSSGALA---------- 569
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+ LA + P++Q+ MLGE L+PL+ ++ + A K+TGMLLE+D E+L+++E ++LKSK
Sbjct: 570 -SALANSPPEQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKSK 628
Query: 283 VEEAVAVLQAHQAKQAAV 300
V EA+ VL++ Q +Q V
Sbjct: 629 VAEAMEVLRSAQQQQTNV 646
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++DG+S+ FGFV F +P++A AV ++NG+ K LYV AQ+K +R+ L +
Sbjct: 255 ADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESF 310
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLAS 55
G SKG+GFV + E A A+ E+NG ++ K +YV RK++R+ S
Sbjct: 167 GESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGS 217
>gi|326492626|dbj|BAJ90169.1| predicted protein [Hordeum vulgare subsp. vulgare]
gi|326511122|dbj|BAJ87575.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 663
Score = 135 bits (339), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 117/318 (36%), Positives = 162/318 (50%), Gaps = 49/318 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G +KG GFV F S E+AT+A+ MNG+++GSKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 359 DSNGVNKGSGFVAFKSSEDATRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFSQMR 418
Query: 62 ANM------RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAP 111
M RM ++ PG VP + Q Q FYG + PQP + P
Sbjct: 419 PVMPPPVAPRM----PMYPPG------VPGMGQ-QLFYGQPPPAFVNPQPGYGFQQHMIP 467
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVIR------GANMSARPI-TGQSTMGPRG-- 162
MRP G +P F P GQ R GA +P+ G M PRG
Sbjct: 468 GMRP------GVAPMPNF-VMPMVQQGQQPQRPSGRRAGAGGMQQPMPMGHQQMVPRGGR 520
Query: 163 GGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
GG A G AA R GG + G G Q ++G A
Sbjct: 521 GGYRYASGRGMPEAAFRGVGGMAP-SLYEMGRMTPGDTGAPQQVSSGALA---------- 569
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+ LA + P++Q+ MLGE L+PL+ ++ + A K+TGMLLE+D E+L+++E ++LKSK
Sbjct: 570 -SALANSPPEQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKSK 628
Query: 283 VEEAVAVLQAHQAKQAAV 300
V EA+ VL++ Q +Q V
Sbjct: 629 VAEAMEVLRSAQQQQTNV 646
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++DG+S+ FGFV F +P++A AV ++NG+ K LYV AQ+K +R+ L +
Sbjct: 255 ADDGKSRCFGFVNFENPDDAVHAVEDLNGKKFDDKELYVGRAQKKSEREMQLKESF 310
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLAS 55
G SKG+GFV + E A A+ E+NG ++ K +YV RK++R+ S
Sbjct: 167 GESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGS 217
>gi|170574509|ref|XP_001892845.1| polyadenylate-binding protein 4 [Brugia malayi]
gi|158601405|gb|EDP38326.1| polyadenylate-binding protein 4, putative [Brugia malayi]
Length = 462
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 68/114 (59%), Positives = 84/114 (73%), Gaps = 9/114 (7%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++GRSKGFGFVCF P+EATKAVTEMNG+++ +KPLYVALAQRKEDRKA LASQYMQR+
Sbjct: 338 DDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRL 397
Query: 62 ANMRMQQMGQL----FQPGSTGGYFVPTLPQPQRFYGPTQMT---QIR-PQPRW 107
A++RM G + + PG TGG+FV + Q QR + PT Q+R PRW
Sbjct: 398 ASIRMHNAGTMHGTVYTPG-TGGFFVSSTLQNQRAFMPTATIPGAQMRGTTPRW 450
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 47/152 (30%), Positives = 69/152 (45%), Gaps = 15/152 (9%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQY-MQR 60
DG+SKGFGFV F +PE+A KAVTEM+ + + LYV AQ+K +R A L +Y Q+
Sbjct: 235 DGKSKGFGFVAFENPEDAEKAVTEMHEYELPGTERKLYVCRAQKKNERSAELKRRYEQQK 294
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+ M+ Q L+ L Q YG + +A M +
Sbjct: 295 VERMQRYQGVNLYVKNLDDTVNDDILKQNFEAYG-----------KITSAKVMCDDNGRS 343
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
+GF + F A+ T + G M +P+
Sbjct: 344 KGFGFVC-FEKPDEATKAVTEMNGKMMCTKPL 374
Score = 39.3 bits (90), Expect = 2.1, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYV 40
E+ SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 140 DEELNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYV 178
>gi|294659673|ref|XP_002770625.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
gi|218511736|sp|Q6BI95.2|PABP_DEBHA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|199434145|emb|CAR65959.1| DEHA2G12474p [Debaryomyces hansenii CBS767]
Length = 627
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 152/312 (48%), Gaps = 62/312 (19%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVCFSSPEEATKA+TEMN R+I KPLYVALAQRK+ R++ L Q R
Sbjct: 368 VDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQAR 427
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
MRMQ +TGG +P P FYG QP + P+G+
Sbjct: 428 -NQMRMQ------NAAATGG--IPGQFIPPMFYG--------QQPGF-----FPPNGRGN 465
Query: 121 QGFPN-IPQFRSAPRAST----GQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVS 175
FP PQ PR GQ G N P+ G M P GG + +
Sbjct: 466 GPFPGPNPQMM-MPRGQIPPPQGQWPRPGPNGQPVPVYG---MPPVYGGDFN-----NGA 516
Query: 176 AAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQK 235
GRQ GY YP RN Q Q G Q A + +A A +QK
Sbjct: 517 NGGRQQRGY--YPNRN-----QNQKGRQQKDLAAI---------------IANAPADQQK 554
Query: 236 QMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
++LGE L+P I + PE AGKITGM+L++DN E+L +LE +E + E+A+ +
Sbjct: 555 RILGEELYPKIVSTGKAQEPEAAGKITGMMLDLDNEEILALLEDDELFNTHFEDALTAFE 614
Query: 292 AHQAKQAAVKKE 303
++ A E
Sbjct: 615 EYKKSSEAATAE 626
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+SKGFGFV F + E A KAV E+N + I + +YV AQ+K +R L QY
Sbjct: 266 DHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQY---- 321
Query: 62 ANMRMQQMGQ 71
N R++++ +
Sbjct: 322 ENTRLEKLSK 331
>gi|66800163|ref|XP_629007.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
gi|74996426|sp|Q54BM2.1|PAP1A_DICDI RecName: Full=Polyadenylate-binding protein 1-A; Short=PABP-1-A;
Short=Poly(A)-binding protein, cytoplasmic 1-A
gi|60462370|gb|EAL60591.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
discoideum AX4]
Length = 565
Score = 134 bits (338), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 144/289 (49%), Gaps = 55/289 (19%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
SKGFGFVC+++P+EAT+AVTEMNGR+IG+KPLYVALAQRK+ R+A L Q+ Q+
Sbjct: 324 SKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKTGIR 383
Query: 67 QQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPR-WAAAPQMRPSGQTAQGFPN 125
QQM + GS +F P PQ Y Q+ P+PR W P P GQ A N
Sbjct: 384 QQMPPTY--GSGPVFFTPAPVNPQVVY-----QQMMPRPRNWNGQPVGVPQGQYA----N 432
Query: 126 IPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPR--GGGPMQ-APGPASVSAAGRQTG 182
+ R PR + GPR GG P Q P P
Sbjct: 433 MNYARGQPRQN----------------------GPRQNGGQPRQNGPRP--------DVS 462
Query: 183 GYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERL 242
G PV+ T AQ Q A++ A+++Q +++ +Q LGE L
Sbjct: 463 GAQPIPVQQQTTLDVAQTQ--QAASSAESALNLQ-------SIINLPSRDQQNVALGEHL 513
Query: 243 FPLIQRMYPELAGKITGMLLE-IDNAELLYMLEHNESLKSKVEEAVAVL 290
+PLI P+LAGKITGMLL+ + EL + + + L K+ EA+ VL
Sbjct: 514 YPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADKIREALEVL 562
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M++D G+SKGFGF F S E A V NG+I KP+Y AQ+K +R+A L +
Sbjct: 220 MADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTF 277
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 1 MSEDGRS-KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+++DG S KGFGFV + + E A KA+ ++NG +I + ++V + ++R
Sbjct: 130 VTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKER 179
>gi|408395605|gb|EKJ74783.1| hypothetical protein FPSE_05031 [Fusarium pseudograminearum CS3096]
Length = 749
Score = 134 bits (337), Expect = 4e-29, Method: Compositional matrix adjust.
Identities = 123/327 (37%), Positives = 159/327 (48%), Gaps = 56/327 (17%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P++ATKAV EMN R+ KPLYVALAQRK+ RK+ L + R +
Sbjct: 434 GKSKGFGFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASIQAR-NQL 492
Query: 65 RMQQMGQL-------------FQPGSTGGYFVPT----LPQPQRFYGPTQMTQIRP---- 103
RMQQ + F PG GY +P +P PQ G M Q RP
Sbjct: 493 RMQQAAAVAGMPQQYMQPPVYFAPGQQPGY-MPQGGRGVPFPQ---GAMGMPQGRPGQFP 548
Query: 104 ---QPRWAAAPQMRP------SGQTAQGF--PNIPQFRSAPRASTGQTVIRGANMSARPI 152
Q PQ P GQ G+ P PQF +A +A RGA R
Sbjct: 549 YPQQGGRGGVPQQMPPNMYGMPGQFPPGYGQPGTPQFMAAMQAQQAALGGRGAPQGGRGG 608
Query: 153 TGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQA 212
P PM P RQ PG GG AAG+ +
Sbjct: 609 PQGMPGMP----PMAGNMPGFPPNNNRQG------GRGGPGRNGNGPQGGRGADAAGLSS 658
Query: 213 VHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYM 272
+ Q LA+A P +QKQ+LGE +FP IQ + +LAGKITGMLLE++N EL+ +
Sbjct: 659 LQQQ---------LASAPPPQQKQILGELIFPKIQAINADLAGKITGMLLEMENPELVNL 709
Query: 273 LEHNESLKSKVEEAVAVLQAHQAKQAA 299
+E +LK+KV+EA+AV + Q++
Sbjct: 710 IEDESALKAKVDEALAVYDEYVKTQSS 736
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV F++ E A KAV E+N + + LYV AQ+K +R+ L Y
Sbjct: 274 DQEGKSRGFGFVNFTTHESAFKAVDELNNKDFHGQDLYVGRAQKKHEREEELRKSY 329
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A++A+ +NG ++ K +YV K+DR KA+
Sbjct: 181 DETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 240
Query: 55 SQYMQRI-ANMRMQQMGQLFQ 74
+ Y++ I A++ QLF+
Sbjct: 241 NVYVKNIAADVTEDDFRQLFE 261
>gi|255556766|ref|XP_002519416.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223541279|gb|EEF42830.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 632
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 130/314 (41%), Positives = 167/314 (53%), Gaps = 56/314 (17%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D GRSKGFGFVCFSS EEA+KAV +G + KPLYVA+AQRKE+R+A L QY Q
Sbjct: 327 MKDDKGRSKGFGFVCFSSSEEASKAVNTFHGYMFHRKPLYVAIAQRKEERQAQLQLQYAQ 386
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMT---QIRPQPRWAAAP-QMRP 115
RIA G+ P+ P Y P T Q+ P+P P MRP
Sbjct: 387 RIA-----------------GFHGPSTPVIPGGYTPLYYTAPSQVHPRPGMMYQPLAMRP 429
Query: 116 SGQTAQGF--PNIPQFRSAPRASTGQTVIRGANMSARPIT------GQSTMG----PRGG 163
G GF P+ P F+ + ++ PI+ G+ M P+GG
Sbjct: 430 -GWRGNGFAPPSRPVFQPS-------------HLPVMPISQRQHKQGRVRMNGHVLPQGG 475
Query: 164 ----GPMQAPGP--ASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQG 217
+Q P S+ Q G KY V N T ++ G+ AA QG
Sbjct: 476 TQSVSYVQQPAQPLTSLKDPSNQRAGQAKY-VPNGRTCDVSKGSGVLSAAPNSTGPVSQG 534
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
E L+S MLAAA P EQKQ+LGE+L+PL+++ P+L KITGMLLE+DN+ELL +LE E
Sbjct: 535 SEVLSS-MLAAASPDEQKQILGEQLYPLVRKHKPDLVAKITGMLLEMDNSELLLLLESPE 593
Query: 278 SLKSKVEEAVAVLQ 291
SL +KVEEAV VL+
Sbjct: 594 SLAAKVEEAVQVLK 607
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 39/59 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
E G S+GFGFV F +P++A A+ MNG +GSK LYV AQ++ +R+ L Q+ ++
Sbjct: 226 DECGSSRGFGFVNFENPDDARWAMERMNGTELGSKVLYVGRAQKRAEREQILRRQFEEK 284
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 31/47 (65%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
EDG+SKG GFV F S + A A+ ++NG I+G K +YV +K DR
Sbjct: 136 EDGKSKGHGFVQFESEDSANSAIEKLNGSIVGDKQIYVGKFVKKSDR 182
>gi|326531316|dbj|BAK05009.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 387
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 110/318 (34%), Positives = 151/318 (47%), Gaps = 62/318 (19%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G SKGFGFVC+S+P+EA AV+ M G + KPLYVA+AQRKEDRKA L Q
Sbjct: 89 MRDDKGISKGFGFVCYSTPDEAKCAVSSMRGVMFYGKPLYVAIAQRKEDRKARLE----Q 144
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFY--GPTQMTQIRPQ----PRWAAAPQM 113
R A + M P GY P + GP++ + P W +
Sbjct: 145 RFA--ELATMAGTASPVIPTGYPHVYFAHPSTHFPQGPSRQGFMYPPIGLGQEWRQ--NV 200
Query: 114 RPSGQTAQGF-----PNIP-QFRSAPRASTGQ--TVIRGANMSARPITGQSTMGPRGGGP 165
PS + Q PN P Q+R+ TG T N + P + M
Sbjct: 201 YPSPHSIQQIHAPLMPNTPRQYRNNRGRMTGNMMTFPHAVNYVSHPQAAKDFM------- 253
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTS-- 223
+ RQ G+ KY P G+ A+H G P++S
Sbjct: 254 ----------SMSRQQFGHAKY------IPPDVVSNGL--------AIHHSG--PISSVN 287
Query: 224 ----TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
++LAAA P +Q+ MLG R++PL++R +P+LA KITGMLLE+D + LL ML ++L
Sbjct: 288 DSFASLLAAAPPDQQRDMLGNRIYPLVERYHPDLASKITGMLLELDTSYLLSMLNSQDTL 347
Query: 280 KSKVEEAVAVLQAHQAKQ 297
+KV E V LQ Q+ +
Sbjct: 348 AAKVNECVQALQGQQSTK 365
>gi|357164563|ref|XP_003580095.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 661
Score = 134 bits (337), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 113/318 (35%), Positives = 152/318 (47%), Gaps = 63/318 (19%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++G SKG GFV FS+ EEA++A+TEMNG+++ KPLYVA AQRKE+RKA L +Q+ Q
Sbjct: 353 DQNGVSKGSGFVAFSTREEASQAITEMNGKMLSGKPLYVAFAQRKEERKAMLQAQFSQ-- 410
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQ--------PQRFYGPTQMTQIRPQPRWA----A 109
+P P LP Q FYG + PQP +
Sbjct: 411 -----------MRPVPITPSMTPRLPMYPPMAPLGQQLFYGQAPPPMMPPQPGFGFQQQL 459
Query: 110 APQMRPSGQTAQGF--PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ 167
P MRPSG + P + Q + PR ++ + Q M PRG
Sbjct: 460 VPGMRPSGAHMPNYFVPVVQQGQQGPRPGMRRSGAGSVQGQQSAQSYQQQMVPRGRVYRY 519
Query: 168 APGP----------ASVSAAG----RQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAV 213
PGP A V A G GG +PVR+ G P A IG + A
Sbjct: 520 PPGPGRNMPEVQPMAGVGAGGMIQPYDMGG---FPVRDAGLSPAAPIGTLTSA------- 569
Query: 214 HVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYML 273
LA A P +Q+ +LGE L+PL++ + A K+TGMLLE+D E+L++L
Sbjct: 570 ------------LANATPDQQRTLLGESLYPLVELLEHNQAAKVTGMLLEMDQTEVLHLL 617
Query: 274 EHNESLKSKVEEAVAVLQ 291
E E+LKSKV EA+ VL+
Sbjct: 618 ESPEALKSKVAEAMDVLR 635
Score = 59.7 bits (143), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 42/68 (61%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
DG+S+ FGF+ F SP++A +AV E+NG+ I K Y AQ+K +R+ L ++ Q + +
Sbjct: 252 DGKSRCFGFINFESPDDAVRAVEELNGKKINDKEWYCGRAQKKSEREMDLKRRFEQSMKD 311
Query: 64 MRMQQMGQ 71
+ GQ
Sbjct: 312 AADKYQGQ 319
Score = 45.1 bits (105), Expect = 0.037, Method: Compositional matrix adjust.
Identities = 23/63 (36%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLASQYMQ 59
G+SKGFGFV + E A A+ +NG +I KP+YV RK++R KA + +++
Sbjct: 162 GQSKGFGFVQYEKEEFAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKARFNNVFVK 221
Query: 60 RIA 62
++
Sbjct: 222 NLS 224
>gi|402085655|gb|EJT80553.1| polyadenylate-binding protein [Gaeumannomyces graminis var. tritici
R3-111a-1]
Length = 773
Score = 134 bits (336), Expect = 6e-29, Method: Compositional matrix adjust.
Identities = 121/335 (36%), Positives = 163/335 (48%), Gaps = 57/335 (17%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCF +P++ATKAV EMN R++ KPLYVALAQRK+ RK L + R +
Sbjct: 426 GKSKGFGFVCFGNPDDATKAVAEMNQRMVNGKPLYVALAQRKDVRKNQLEASIQAR-NQL 484
Query: 65 RM----------QQMGQ---LFQPGSTGGYFVPT----LPQPQRFYGPTQMTQIRPQ--- 104
RM QQ Q + PGS G+ P +P PQ G + RP
Sbjct: 485 RMQQAAAAAGMPQQFMQAPVFYGPGSQPGFMPPAGGRGMPFPQPGMGLPAVQGGRPGQFP 544
Query: 105 ------------------PRWAAAPQMRPSGQTAQGFPNIPQFRSAPRA--STGQTVIRG 144
P + Q P GQ PN PQF +A + + T RG
Sbjct: 545 AGYAGQQGGRGGLPQQIPPMYGIPGQFPPQGQYQ---PNNPQFIAAMQQLQQSNLTAGRG 601
Query: 145 ANMSARPITGQSTMGPRGGGPMQAPG-PASVSAAGR--QTGGYNKYPVRNPGTQPQAQIG 201
++ P G +GG P PG P + + G G + Q
Sbjct: 602 VPVARGP-------GIQGGLPGSMPGMPGAANMPGYPPNARQQGAGAGAGRGAGGRNQGP 654
Query: 202 GIQPAA--AGVQAVHVQGQEPLTSTMLAAAQ-PQEQKQMLGERLFPLIQRMYPELAGKIT 258
G AA G A +G L + + A P +QKQ+LGE +FP IQ ++PELAGKIT
Sbjct: 655 GFAGAAPQGGRDAAPAEGASVLQTQLAAVGNNPGQQKQILGEVIFPKIQAIHPELAGKIT 714
Query: 259 GMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
GMLLE++NAEL+ ++E+ SL++KV+EA+AV +
Sbjct: 715 GMLLEMENAELVALIENEGSLRAKVDEALAVYDDY 749
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+S+GFGFV F+S E+A+KAV E+N + + LYV AQ+K +R+ L Y
Sbjct: 278 ETGKSRGFGFVNFTSHEDASKAVEELNEKEFHGQNLYVGRAQKKHEREEELRRSY 332
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A++A+ +NG ++ K +YV K+DR KA+
Sbjct: 183 DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 242
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 243 NIYVKNI 249
>gi|159162550|pdb|1JGN|A Chain A, Solution Structure Of The C-Terminal Pabc Domain Of Human
Poly(A)-Binding Protein In Complex With The Peptide From
Paip2
gi|159162551|pdb|1JH4|A Chain A, Solution Structure Of The C-Terminal Pabc Domain Of Human
Poly(A)-Binding Protein In Complex With The Peptide From
Paip1
Length = 98
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 67/82 (81%), Positives = 76/82 (92%)
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
PLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL
Sbjct: 6 PLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESL 65
Query: 280 KSKVEEAVAVLQAHQAKQAAVK 301
+SKV+EAVAVLQAHQAK+AA K
Sbjct: 66 RSKVDEAVAVLQAHQAKEAAQK 87
>gi|209881749|ref|XP_002142312.1| polyadenylate-binding protein [Cryptosporidium muris RN66]
gi|209557918|gb|EEA07963.1| polyadenylate-binding protein, putative [Cryptosporidium muris
RN66]
Length = 723
Score = 134 bits (336), Expect = 7e-29, Method: Compositional matrix adjust.
Identities = 122/342 (35%), Positives = 165/342 (48%), Gaps = 61/342 (17%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G S+GFGFV F SP+EATKA+TEM+ +++ KPLYV L +RKE R L QRI
Sbjct: 394 DESGISRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRL----QQRI 449
Query: 62 AN------MRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRP 115
+R + G P +F P QM I P AA M+
Sbjct: 450 RGGTVPPVLRPGTIPPGPPTAVHGA--------PMQFGAPPQMYFIPGNPAVAATAGMQH 501
Query: 116 SGQTAQG-FPN--------------IPQFRSA-PRASTGQTV-----IRG--ANMSARPI 152
+ G FPN IP A P T Q+V + G +N + P
Sbjct: 502 NRTPMVGSFPNQGVMASPWRPNPTRIPYGTGALPPQMTAQSVGYNPGVNGIPSNNGSIPQ 561
Query: 153 TGQSTMGP----RGGGPMQAPGPASVSAAG--RQTGGYN--------KYPVR-NPGTQPQ 197
TG ++ P R GG Q + G R T G+ K+P QP+
Sbjct: 562 TGPQSVNPAQNIRTGGNSQRIHNRHMQGQGGSRPTHGHQVQIPKQSFKFPSHIKTSDQPR 621
Query: 198 AQI---GGIQPAAAGVQAVHV--QGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPE 252
+ G + +G+ +V + Q PLT++ LA A P QKQ+LGERLFP+I + PE
Sbjct: 622 VDMIPGGLVNMDPSGISSVPMIPQSDIPLTASTLATASPSMQKQLLGERLFPIIAQYQPE 681
Query: 253 LAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
LAGKITGM+LE+DN ELL +L + +K+KV+EA+ VL+ Q
Sbjct: 682 LAGKITGMMLEMDNNELLEILNSDAEIKNKVDEAMIVLERAQ 723
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/46 (45%), Positives = 31/46 (67%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+G S G+GF+ F PE A +A+ +NG I+G +P+YV QRK +R
Sbjct: 136 EGNSLGYGFIHFEHPESAKEAIARLNGMILGDRPIYVGKFQRKAER 181
>gi|326503608|dbj|BAJ86310.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 746
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 117/309 (37%), Positives = 159/309 (51%), Gaps = 45/309 (14%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++G SKG GFV FS+ EEA++A+TEMNG++I KPLYVA AQRKE+RKA L +Q+ Q
Sbjct: 438 DQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEERKAMLQAQFSQ-- 495
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQMRPSG 117
MR M P +PTL Q Q FYG + PQP + P MRP G
Sbjct: 496 --MRPVPMTPSMTPRLPMYPPMPTLGQ-QLFYGQAPPAMMPPQPGYGFQQQLVPGMRPGG 552
Query: 118 QTAQGFPN--IPQF---RSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPA 172
PN +P + PR ++ A P Q M PRG PGP
Sbjct: 553 --GAHMPNYFVPVVQPGQQGPRPGMRRSGPGSAQGQQTPQPFQQQMVPRGRVYRYPPGPR 610
Query: 173 SVSAA----GRQTGG----YN--KYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
++ G GG Y+ +PVR+ G P IG + A
Sbjct: 611 HMAEVQQMPGVGVGGMVQPYDMGSFPVRDAGVSPAPPIGTLTSA---------------- 654
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
LA A P++Q+ +LGE L+PL++++ + A K+TGMLLE+D E+L++LE E+LKSK
Sbjct: 655 ---LANATPEQQRTILGESLYPLVEKLEHQQAAKVTGMLLEMDQTEVLHLLESPEALKSK 711
Query: 283 VEEAVAVLQ 291
V EA+ VL+
Sbjct: 712 VAEAMDVLR 720
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
DG+S+ FGFV F SP++A +AV E+NG+ I K YV AQ+K +R+ L ++ Q + +
Sbjct: 337 DGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKD 396
Query: 64 MRMQQMGQ 71
+ GQ
Sbjct: 397 AADKYQGQ 404
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLAS 55
M + G+SKGFGFV + E A A+ +NG +I KP+YV RK++R KA +
Sbjct: 243 MDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNN 302
Query: 56 QYMQRIA 62
+++ ++
Sbjct: 303 VFVKNLS 309
>gi|413956150|gb|AFW88799.1| hypothetical protein ZEAMMB73_294352 [Zea mays]
Length = 735
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 107/311 (34%), Positives = 155/311 (49%), Gaps = 47/311 (15%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G S+GFGFVC+S+PEEA AV M G + KPLYVA+ QRKE+RKA L +
Sbjct: 434 MRDDKGISRGFGFVCYSTPEEAKSAVNNMRGVMFFGKPLYVAIFQRKEERKAKLQQHF-- 491
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPT-LPQPQRFYGPTQMTQIRPQPRWAAAP-----QM 113
Q+ ++ P ++ +PT PQ + T + Q P+ + P +
Sbjct: 492 -------AQLARMVGPANS---MIPTGYPQVYFAHPSTHIPQGPPRHGFVYPPMGLSHEW 541
Query: 114 RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
RPS FP P + I M P +S G GG M P P +
Sbjct: 542 RPSM-----FPPAPNLQQ----------IHSPVMPNSPRHYRSNRGRMGGNMM--PLPHA 584
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQA--VHVQGQEPLT------STM 225
V T + P + + P+ + + + V A + + +P++ S
Sbjct: 585 VHTMNYMT---HPQPAKEFMSLPRQRFNHPKYFSNDVMANSLAIHQSDPVSTMNDSFSNY 641
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A P EQK +LG RL+PL++R PELA KITGMLLE+DN+E++ +L +E L KV+E
Sbjct: 642 LASAPPAEQKNLLGNRLYPLVERHQPELASKITGMLLELDNSEVVTLLCSSEMLSVKVDE 701
Query: 286 AVAVLQAHQAK 296
V +LQA + K
Sbjct: 702 CVQLLQATKPK 712
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 34/58 (58%), Positives = 42/58 (72%), Gaps = 5/58 (8%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG S GFGFV F +PE A KA + MNG ++GSK LYVA AQ+KE+RK QY+QR+
Sbjct: 335 DGSSLGFGFVSFQNPESAIKAQSTMNGMLLGSKALYVARAQKKEERK-----QYLQRL 387
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/83 (30%), Positives = 42/83 (50%), Gaps = 12/83 (14%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA---------- 51
+EDG S+G+GFV F+S E A +A+ +NG + + L+VA +K +R A
Sbjct: 243 NEDGTSRGYGFVQFTSQESADEAIGNLNGSLFNDRKLHVATFIKKSERSANNDDKFTNLY 302
Query: 52 --HLASQYMQRIANMRMQQMGQL 72
HL + + ++ Q G +
Sbjct: 303 MKHLDDDITEELVKLKFSQFGSI 325
>gi|115459296|ref|NP_001053248.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|32490269|emb|CAE05558.1| OSJNBb0116K07.11 [Oryza sativa Japonica Group]
gi|113564819|dbj|BAF15162.1| Os04g0504800 [Oryza sativa Japonica Group]
gi|215695125|dbj|BAG90316.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 659
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 114/320 (35%), Positives = 151/320 (47%), Gaps = 61/320 (19%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G SKG GFV FS+ EEA++A+TEMNG++I KPLYVA AQRKEDRKA L +Q+ Q
Sbjct: 357 NGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQ---- 412
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQ--------PQRFYGPTQMTQIRPQPRWA----AAP 111
+P P LP Q FYG + PQP + P
Sbjct: 413 ---------VRPVPMTPSMAPRLPMYPPMAPLGQQLFYGQAPPAIMPPQPGFGFQQQLVP 463
Query: 112 QMRPSGQTAQGF--PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRG------- 162
MRP G + P + Q + PR ++ A Q M PRG
Sbjct: 464 GMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSAQGQQSAQPFQQQMLPRGRVYRYPP 523
Query: 163 --GGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEP 220
P P P V+ Q+ +PVR+ G P A IG + A
Sbjct: 524 AHNMPDVPPMPG-VAGGMIQSYDMGGFPVRDAGLSP-APIGTLTSA-------------- 567
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D E+L++LE E+LK
Sbjct: 568 -----LANANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALK 622
Query: 281 SKVEEAVAVL----QAHQAK 296
SKV EA+ VL Q H A
Sbjct: 623 SKVAEAMDVLRNVAQQHNAN 642
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
DG+S+ FGF+ F SP++A +AV E+NG+ I K YV AQ+K +R+ L ++ Q + +
Sbjct: 254 DGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKD 313
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
E G+SKGFGFV + E A A+ +NG +I KP+YV RK++R+
Sbjct: 161 DEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERE 209
>gi|288563114|pdb|3KUS|A Chain A, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein In Complex With The Binding Region Of Paip2
gi|288563115|pdb|3KUS|B Chain B, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein In Complex With The Binding Region Of Paip2
gi|288563118|pdb|3KUT|A Chain A, Crystal Structure Of The Mlle Domain Of Poly(a)-binding
Protein In Complex With The Binding Region Of Paip2
gi|288563119|pdb|3KUT|B Chain B, Crystal Structure Of The Mlle Domain Of Poly(a)-binding
Protein In Complex With The Binding Region Of Paip2
gi|289526807|pdb|3KTP|A Chain A, Structural Basis Of Gw182 Recognition By Poly(a)-binding
Protein
gi|289526809|pdb|3KTR|A Chain A, Structural Basis Of Ataxin-2 Recognition By
Poly(A)-Binding
gi|295982345|pdb|3KUI|A Chain A, Crystal Structure Of C-Terminal Domain Of Pabpc1 In
Complex Binding Region Of Erf3a
gi|295982347|pdb|3KUJ|A Chain A, Crystal Structure Of C-Terminal Domain Of Pabpc1 In
Complex With Binding Region Of Erf3a
gi|317455449|pdb|3PKN|A Chain A, Crystal Structure Of Mlle Domain Of Poly(A) Binding
Protein In Complex With Pam2 Motif Of La-Related Protein
4 (Larp4)
Length = 88
Score = 133 bits (334), Expect = 1e-28, Method: Compositional matrix adjust.
Identities = 67/82 (81%), Positives = 76/82 (92%)
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
PLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL
Sbjct: 6 PLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESL 65
Query: 280 KSKVEEAVAVLQAHQAKQAAVK 301
+SKV+EAVAVLQAHQAK+AA K
Sbjct: 66 RSKVDEAVAVLQAHQAKEAAQK 87
>gi|319411853|emb|CBQ73896.1| probable PAB1-mRNA polyadenylate-binding protein [Sporisorium
reilianum SRZ2]
Length = 650
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 121/304 (39%), Positives = 160/304 (52%), Gaps = 50/304 (16%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G S+GFGFVC+S PEEA KAV+EMNG+++ ++PLYVALAQRK+DR+ L +Q MQR
Sbjct: 367 GVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQRKDDRRQQLEAQIMQRNQLR 426
Query: 65 RM-----QQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT 119
Q MG PG G Y+ PQP F P Q + P+PR+A P+G
Sbjct: 427 LQQQAAAQGMGY---PGP-GMYY----PQPGAF--PGQPGGMMPRPRYA------PAGMM 470
Query: 120 AQGFPNIPQFRSAPRASTGQT---VIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSA 176
QG P AP GQ ++ ARP G P A PA V+
Sbjct: 471 PQGMP------MAPYGQPGQFPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPPAGVNG 524
Query: 177 AGRQTGG------YNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
A R G + P P +PQ + G QP A T+ LA A
Sbjct: 525 APRPAGQPVPGQPMPRGPAARPAGRPQGEAAG-QPGAL-------------TAAALAKAS 570
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P+EQKQMLGE ++P + PELAGK+TGM+LE+ ELL++L+ +E+L +KV EA+ VL
Sbjct: 571 PEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLDESEALDAKVNEALEVL 630
Query: 291 QAHQ 294
+ +Q
Sbjct: 631 KEYQ 634
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+DG+SKGFGFV F EA AV E++ + L+VA AQ+K +R+ L Y
Sbjct: 261 DDDGKSKGFGFVNFEDHNEAQTAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
>gi|351704535|gb|EHB07454.1| Polyadenylate-binding protein 1 [Heterocephalus glaber]
Length = 281
Score = 132 bits (332), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 81/111 (72%), Gaps = 5/111 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAV EMNGR + +KPLYVALAQ KE+ AHL SQYMQR
Sbjct: 122 MMEGGRSKGFGFVCFSSPEEATKAVKEMNGRTVATKPLYVALAQLKEESPAHLTSQYMQR 181
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPR 106
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP+PR
Sbjct: 182 MASVRAVPNAVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPRPR 232
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/38 (76%), Positives = 33/38 (86%)
Query: 264 IDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
IDN+ELL+MLE ESL SK +EAVAVLQAHQAK+AA K
Sbjct: 233 IDNSELLHMLESPESLCSKADEAVAVLQAHQAKEAAQK 270
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/45 (53%), Positives = 30/45 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
E G+SKGF FV F E+A KAV EMNG+ + K +YV AQ+K
Sbjct: 21 DESGKSKGFRFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKK 65
>gi|346323639|gb|EGX93237.1| polyadenylate-binding protein [Cordyceps militaris CM01]
Length = 736
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 125/334 (37%), Positives = 157/334 (47%), Gaps = 75/334 (22%)
Query: 10 FGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRMQQ- 68
FGFVCFS+P++ATKAV EMN R+I KPLYVALAQRK+ RK+ L + R MRMQQ
Sbjct: 432 FGFVCFSNPDDATKAVAEMNQRMINGKPLYVALAQRKDVRKSQLEASIQAR-NQMRMQQA 490
Query: 69 -----MGQLF----------QPGSTGGYFVPT----LPQPQRFYGPTQMTQIRPQ----- 104
M Q F QPG FVP +P PQ G MT +RP
Sbjct: 491 AAAAGMSQPFMQPPVFYAGQQPG-----FVPQGGRGIPFPQPGMG---MTGVRPGQFPGY 542
Query: 105 -------------PRWAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARP 151
P P P G P PQF +A ++ A +
Sbjct: 543 PQQGGRGGPQQIPPNMYNMPNQFPP---QFGQPGTPQFMAA---------MQQAALGGGR 590
Query: 152 ITGQSTMGPRGGGPMQAPG--PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAG 209
Q G G P PG P + A GR GG R IQP A
Sbjct: 591 GGPQGGRGNAGMPPNAVPGFPPNNRQAMGR--GGN-----RAGNNTNNVNSANIQPVRAS 643
Query: 210 VQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAEL 269
+Q T ++ A P +QKQMLGE +FP IQ + ELAGKITGMLLE+DN+EL
Sbjct: 644 DNGSALQ-------TQISGAPPAQQKQMLGEMIFPKIQAINGELAGKITGMLLEMDNSEL 696
Query: 270 LYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKKE 303
+ ++E + +LKSKV+EA+AV + Q +K+
Sbjct: 697 INLIEDDAALKSKVDEALAVYDEYVKTQDGDEKK 730
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 35/54 (64%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
DG+S+GFGFV F++ E A+ AV E+N + + LYV AQ+K +R+ L Y
Sbjct: 272 DGKSRGFGFVNFTTHEAASAAVEELNNKDFHGQELYVGRAQKKHEREEELRKSY 325
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 177 DETGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 236
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ IA ++ Q LF+
Sbjct: 237 NVYIKNIAPDVTDDQFRVLFE 257
>gi|46128087|ref|XP_388597.1| hypothetical protein FG08421.1 [Gibberella zeae PH-1]
Length = 784
Score = 131 bits (330), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 125/327 (38%), Positives = 159/327 (48%), Gaps = 56/327 (17%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P++ATKAV EMN R+ KPLYVALAQRK+ RK+ L + R +
Sbjct: 412 GKSKGFGFVCFSNPDDATKAVAEMNQRMFNGKPLYVALAQRKDVRKSQLEASIQAR-NQI 470
Query: 65 RMQQ------MGQ-------LFQPGSTGGYFVPT----LPQPQRFYGPTQMTQIRP---- 103
RMQQ M Q F PG G F+P +P PQ G M Q RP
Sbjct: 471 RMQQAVAHAGMPQQYMQPPVYFAPGQQPG-FMPQGGRGVPFPQ---GGMGMPQGRPGQFP 526
Query: 104 ---QPRWAAAPQMRP------SGQTAQGF--PNIPQFRSAPRASTGQTVIRGANMSARPI 152
Q PQ P GQ G+ P PQF +A +A RGA R
Sbjct: 527 YPQQGGRGGVPQQMPPNMYGMPGQFPPGYGQPGTPQFMAAMQAQQAALGGRGAPQGGRGG 586
Query: 153 TGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQA 212
P PM P RQ PG GG AAG+ +
Sbjct: 587 PQGMPGMP----PMAGNMPGFPPNNNRQG------GRGGPGRNGNGPQGGRGADAAGLSS 636
Query: 213 VHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYM 272
+ Q LA+A P +QKQ+LGE +FP IQ + +LAGKITGMLLE++N EL+ +
Sbjct: 637 LQQQ---------LASAPPPQQKQILGELIFPKIQAINADLAGKITGMLLEMENPELVNL 687
Query: 273 LEHNESLKSKVEEAVAVLQAHQAKQAA 299
+E +LK+KV+EA+AV + Q +
Sbjct: 688 IEDESALKAKVDEALAVYDEYVKTQTS 714
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV F++ E A+KAV E+N + + LYV AQ+K +R+ L Y
Sbjct: 274 DQEGKSRGFGFVNFTTHESASKAVDELNNKDFHGQDLYVGRAQKKHEREEELRKSY 329
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A++A+ +NG ++ K +YV K+DR KA+
Sbjct: 181 DETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 240
Query: 55 SQYMQRI-ANMRMQQMGQLFQ 74
+ Y++ I A++ QLF+
Sbjct: 241 NVYVKNIAADVTEDDFRQLFE 261
>gi|317106694|dbj|BAJ53195.1| JHL03K20.4 [Jatropha curcas]
Length = 642
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 116/301 (38%), Positives = 159/301 (52%), Gaps = 36/301 (11%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G S+G GFV FS+ EEA++A+TEMNG+++ SKPLYVALAQRKE+R+A L +QY Q
Sbjct: 347 NGVSRGSGFVAFSTAEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQYSQIRPA 406
Query: 64 M------RMQQMGQLFQPGSTG-GYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPS 116
M RM ++ PG+ G G+ Q FYG + PQP + Q+ P
Sbjct: 407 MAPPIGPRM----PIYPPGTPGIGH--------QLFYGQGPPAIVPPQPGFGYQQQLVPG 454
Query: 117 GQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPI-TGQSTMGPRGGGPMQAPGPA--S 173
+ P + + A R S G+ GA +P+ Q M PRG PG +
Sbjct: 455 MRPNFFVPMVQPGQQAQRPS-GRRSGAGAVQPQQPLPMMQPQMLPRGRVYRYPPGRSMPD 513
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQE 233
V AG GG P + G P QP G A T LA A P++
Sbjct: 514 VPMAGL-PGGMLPVPY-DMGGMPFRDGAFSQPVQTGALA-----------TALANAMPEQ 560
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
Q+ +LGE L+PL+ ++ E A K+TGMLLE+D E+L++LE ESLK+KV EA+ VL+
Sbjct: 561 QRTLLGENLYPLVDQLEHENAAKVTGMLLEMDQTEVLHLLESPESLKAKVAEAMEVLRTV 620
Query: 294 Q 294
Q
Sbjct: 621 Q 621
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+S+ FGFV F +P++A ++V +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 244 NGKSRCFGFVNFENPDDAAQSVEALNGKTFDEKEWYVGKAQKKSEREVELKGRFEQTL 301
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 37/63 (58%), Gaps = 5/63 (7%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLASQYMQ 59
G+S G+GFV F + E A A+ ++NG ++ K +YV RK++R KA + Y++
Sbjct: 154 GQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRKQERESAIDKATFNNVYVK 213
Query: 60 RIA 62
++
Sbjct: 214 NLS 216
>gi|218195166|gb|EEC77593.1| hypothetical protein OsI_16552 [Oryza sativa Indica Group]
Length = 659
Score = 131 bits (330), Expect = 4e-28, Method: Compositional matrix adjust.
Identities = 113/320 (35%), Positives = 150/320 (46%), Gaps = 61/320 (19%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G SKG GFV FS+ EEA++A+TEMNG++I KPLYVA AQRKEDRK L +Q+ Q
Sbjct: 357 NGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKVMLQAQFSQ---- 412
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQ--------PQRFYGPTQMTQIRPQPRWA----AAP 111
+P P LP Q FYG + PQP + P
Sbjct: 413 ---------VRPVPMTPSMAPRLPMYPPMAPLGQQLFYGQAPPAIMPPQPGFGFQQQLVP 463
Query: 112 QMRPSGQTAQGF--PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRG------- 162
MRP G + P + Q + PR ++ A Q M PRG
Sbjct: 464 GMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSAQGQQSAQPFQQQMLPRGRVYRYPP 523
Query: 163 --GGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEP 220
P P P V+ Q+ +PVR+ G P A IG + A
Sbjct: 524 AHNMPDVPPMPG-VAGGMIQSYDMGGFPVRDAGLSP-APIGTLTSA-------------- 567
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D E+L++LE E+LK
Sbjct: 568 -----LANANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALK 622
Query: 281 SKVEEAVAVL----QAHQAK 296
SKV EA+ VL Q H A
Sbjct: 623 SKVAEAMDVLRNVAQQHNAN 642
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
DG+S+ FGF+ F SP++A +AV E+NG+ I K YV AQ+K +R+ L ++ Q + +
Sbjct: 254 DGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKD 313
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
E G+SKGFGFV + E A A+ +NG +I KP+YV RK++R+
Sbjct: 161 DEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERE 209
>gi|364505967|pdb|3PTH|A Chain A, The Pabc1 Mlle Domain Bound To The Variant Pam2 Motif Of
Larp4b
Length = 82
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 65/79 (82%), Positives = 74/79 (93%)
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ES
Sbjct: 4 EPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES 63
Query: 279 LKSKVEEAVAVLQAHQAKQ 297
L+SKV+EAVAVLQAHQAK+
Sbjct: 64 LRSKVDEAVAVLQAHQAKE 82
>gi|357475273|ref|XP_003607922.1| Poly(A)-binding protein [Medicago truncatula]
gi|355508977|gb|AES90119.1| Poly(A)-binding protein [Medicago truncatula]
Length = 654
Score = 130 bits (328), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 115/321 (35%), Positives = 163/321 (50%), Gaps = 62/321 (19%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RIA 62
+G S+G GFV FS+PEEA++A+ EMNG+++ SKPLYV LAQRKEDR+A L +Q+ Q R
Sbjct: 352 NGVSRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVTLAQRKEDRRARLQAQFAQMRPV 411
Query: 63 NM------RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQ 112
+M RM ++ PG P + Q Q FYG I QP + P
Sbjct: 412 SMPPSVAPRM----PMYPPGG------PGMGQ-QIFYGQGPPAIIPSQPGFGYQQQLVPG 460
Query: 113 MRPSGQTAQGF--PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRG-------- 162
MRP G F P + Q + R + + P+ Q M PRG
Sbjct: 461 MRPGGAPVPNFFVPMVQQGQQGQRPGGRRGGGVQQSQQPVPLMPQQ-MLPRGRVYRYPPG 519
Query: 163 ----GGPMQAPGPA-SVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQG 217
GPM PG A + + GG P+R+ Q IG +
Sbjct: 520 RGMPDGPM--PGVAGGMYSVPYDVGG---MPIRDASLSQQIPIGAL-------------- 560
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
++ LA A P++Q+ MLGE L+PL++++ P+ A K+TGMLLE+D E+L++LE E
Sbjct: 561 -----ASHLANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPE 615
Query: 278 SLKSKVEEAVAVLQAHQAKQA 298
+LK+KV EA+ VL+ +QA
Sbjct: 616 ALKAKVAEAMDVLRNVAQQQA 636
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F S ++A +AV +NG+ I K YV AQ+K +R+ L ++ Q +
Sbjct: 249 DGKSKCFGFVNFESTDDAARAVEALNGKKIDDKEWYVGKAQKKSEREHELKIKFEQSM 306
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK++R++
Sbjct: 159 GQSKGYGFVQFDTEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERES 205
>gi|313219101|emb|CBY43303.1| unnamed protein product [Oikopleura dioica]
Length = 512
Score = 130 bits (327), Expect = 8e-28, Method: Compositional matrix adjust.
Identities = 104/242 (42%), Positives = 120/242 (49%), Gaps = 54/242 (22%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+GRSKGFGFVCFSSPEEATKAVTEMNGRI G KPLYV LAQRKEDRKAHL QYMQR++
Sbjct: 322 NGRSKGFGFVCFSSPEEATKAVTEMNGRIFGGKPLYVGLAQRKEDRKAHLQQQYMQRVST 381
Query: 64 -MRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQG 122
+RMQ G V QP R+ PT GQ Q
Sbjct: 382 GIRMQAF--------MGNQVVNQNFQPPRYILPTM------------------QGQPVQM 415
Query: 123 FPN-IPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ-APGPASVSAAGRQ 180
FP P R+ PR + ++ M I G+ M +GG + P +V
Sbjct: 416 FPQGTPMVRATPRWAPPNQRVQMPGM----IRGR--MAQQGGPQFRLTPSVRNVQIPSE- 468
Query: 181 TGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGE 240
++ P P QPA Q E LTS+MLA A PQEQKQMLGE
Sbjct: 469 -------VIQMPPQMPHQN----QPAGD-------QAPETLTSSMLANANPQEQKQMLGE 510
Query: 241 RL 242
RL
Sbjct: 511 RL 512
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/43 (41%), Positives = 29/43 (67%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
SKGFGFV + S E A +A+ ++NG ++ K ++VA + + DR
Sbjct: 128 SKGFGFVHYESDESAQRAIEKVNGMLMEDKKVFVARFKSRNDR 170
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 23/64 (35%), Positives = 37/64 (57%), Gaps = 1/64 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G SK GF+ F ++A AV M+ + I K LY AQ+K +R + L ++Y ++I
Sbjct: 220 GLSKCHGFISFKEHDQAEAAVEIMHEKEIEGKKLYCGRAQKKAERSSELKAKY-EKIKQE 278
Query: 65 RMQQ 68
R+Q+
Sbjct: 279 RIQR 282
>gi|359495203|ref|XP_002263507.2| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein 3
[Vitis vinifera]
Length = 1093
Score = 130 bits (326), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 151/302 (50%), Gaps = 33/302 (10%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G SKG GFV F +PEEAT+A+ MNG++IG KPLYVA+AQRKE+RKA L +Q+ Q +
Sbjct: 793 GLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRSPG 852
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGFP 124
M + Q PG G P L Q ++G P + P+ GF
Sbjct: 853 AMTPL-QSGVPGFHSG--APRLAPQQLYFG-------------QGTPGLIPTQPAGYGFQ 896
Query: 125 NIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGY 184
Q R I + + GQ MG R GG Q R +
Sbjct: 897 Q--QLMPGMRPGVAPNFIMPYQLQRQGQPGQR-MGVRRGGNSQQMQHQQQPLLHRNSNQS 953
Query: 185 NKYPVR-----NPGTQPQAQIGGIQPAAAGVQAVHVQ-------GQEPLTS--TMLAAAQ 230
+Y +P PQ +G + P V + V G P+++ + LA+
Sbjct: 954 YRYMANGRNGVDPSMVPQGLMGPVMPLPFDVSGMPVSPMDIQRTGPVPMSTLASALASTT 1013
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P Q+ MLGE+LFPL++R+ E AGK+TGMLLE+D E+L+++E ++LK+KV EA+ VL
Sbjct: 1014 PDNQRLMLGEQLFPLVERIERETAGKVTGMLLEMDQTEVLHLIESPDALKNKVAEAMDVL 1073
Query: 291 QA 292
+A
Sbjct: 1074 RA 1075
Score = 46.2 bits (108), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIG-SKPLYVALAQRKEDRKAHLASQYMQRIAN 63
G SK FGFV F S + A AV +NG K YV AQRK +R+A L +++ Q N
Sbjct: 689 GMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKN 748
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+ +G+SKG+GFV F E A A+ +NG +I K +YV L R ++R
Sbjct: 594 LDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERN 643
>gi|118486179|gb|ABK94932.1| unknown [Populus trichocarpa]
Length = 408
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/303 (36%), Positives = 151/303 (49%), Gaps = 35/303 (11%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G S+G GFV FS+PEEA++A+ EMNG+++ SKPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 108 NGISRGSGFVAFSTPEEASRALLEMNGKMVASKPLYVALAQRKEDRRARLQAQFSQMRPV 167
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQMRPSGQT 119
+G++ TG P L Q Q FYG + PQP + P MRP G
Sbjct: 168 AMAPSVGRMPMYPPTG----PGLGQ-QIFYGQGPPAIMPPQPGFGYQQQLVPGMRPGGAP 222
Query: 120 AQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQST--MGPRGGGPMQAPG------P 171
F +P + + G ++ M PRG PG P
Sbjct: 223 MPNF-FVPMVQQGQQGQRPGGRRAGTGQQSQQPVQLMQQQMLPRGRVYRYPPGRGLPDVP 281
Query: 172 ASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQP 231
+ A G + Y+ G P QP G A + A A P
Sbjct: 282 MTGVAGGMLSVPYDM------GGMPMRDAALSQPIPIGALATAL-----------ANATP 324
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
+Q+ MLGE L+PL++++ PE A K+TGMLLE+D E+L++LE E+LKSKV EA+ VL+
Sbjct: 325 DQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKSKVNEAMEVLR 384
Query: 292 AHQ 294
Q
Sbjct: 385 TVQ 387
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+S+ FGFV F + ++A KA +NG+ K +V AQ+K +R+ L ++ Q +
Sbjct: 5 DGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSM 62
>gi|379072630|gb|AFC92947.1| poly(A) binding protein, cytoplasmic 1, partial [Pipa carvalhoi]
Length = 206
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 99/224 (44%), Positives = 125/224 (55%), Gaps = 34/224 (15%)
Query: 57 YMQRIANMRMQQ-MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQ 112
YMQR+A++R+ + +QP + YF+ +P Q +Y P Q+ Q+RP PRW A
Sbjct: 1 YMQRMASVRVPNPVINPYQPPPSS-YFMAAIPPAQNRPAYYPPGQIAQLRPSPRWTA--- 56
Query: 113 MRPSGQTAQGFPNIPQFR-SAPRASTGQTVIRGANMSARPITGQ-------STMGPRGGG 164
G F N+P R +APR T T+ +N R ++ Q TMGPR
Sbjct: 57 ---QGARPHPFQNMPTIRPTAPRPPTFSTMRPASNQVPRVVSAQRVANTSTQTMGPRPTA 113
Query: 165 PMQAPGPASVSAAGRQTGGYNKYPVRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEP 220
A ++V A + VRNP TQPQ + QPA VHVQGQEP
Sbjct: 114 AAAAAATSTVRAVPQYKYAAG---VRNPQQHLNTQPQ--VAMQQPA------VHVQGQEP 162
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEI 264
LT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEI
Sbjct: 163 LTASMLASAPPQEQKQMLGERLFPLIQAMHPNLAGKITGMLLEI 206
>gi|448115215|ref|XP_004202770.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359383638|emb|CCE79554.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 626
Score = 129 bits (325), Expect = 1e-27, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 146/304 (48%), Gaps = 66/304 (21%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVCFSSPEEATKA+TEMN R+ KPLYVALAQRK+ R++ L Q R
Sbjct: 367 VDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLEQQIQAR 426
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
MRMQ G G F+P + FYG QP + P+G+ +
Sbjct: 427 -NQMRMQNAAAT---GGIPGQFIPPM-----FYG--------QQPGF-----FPPNGRGS 464
Query: 121 QGFPNIPQFRSAPRAST----GQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSA 176
FP PR GQ G N P+ G + P G A G
Sbjct: 465 APFPGPNPQMMVPRGQIPPPQGQWPRAGPNGQPVPVYG---IPPVYGDFAAANG------ 515
Query: 177 AGRQTGGYNKYPVR--NPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
GRQ GY YP R N +PQ + + +LA+A +Q
Sbjct: 516 -GRQQRGY--YPNRGQNQKGRPQKDL----------------------AALLASAPVDQQ 550
Query: 235 KQMLGERLFPLIQRM----YPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
K++LGE L+P I M PE AGKITGM+L++DN E+L +LE + + E+A+
Sbjct: 551 KRILGEELYPKIVSMGRAQEPEAAGKITGMMLDLDNQEILALLEDDALFNNHFEDALTAY 610
Query: 291 QAHQ 294
+ ++
Sbjct: 611 EEYK 614
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
+G+SKGFGFV F S E A KAV E+N + I + LYV AQ+K +R L QY R+
Sbjct: 267 EGKSKGFGFVNFESHEAAVKAVEELNDKDINGQNLYVGRAQKKRERIEELKRQYETARLE 326
Query: 63 NMRMQQMGQLF 73
+ Q LF
Sbjct: 327 KLSKYQGVNLF 337
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SK FGFV + + E A A+ +NG ++ + +YV K+DR KA+
Sbjct: 172 DEQGNSKCFGFVHYETAEAARAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFT 231
Query: 55 SQYMQRIA-NMRMQQMGQLFQP 75
+ Y++ I ++M LF+P
Sbjct: 232 NVYVKNIDLGFSEEEMRNLFEP 253
>gi|224062834|ref|XP_002300896.1| predicted protein [Populus trichocarpa]
gi|222842622|gb|EEE80169.1| predicted protein [Populus trichocarpa]
Length = 648
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 103/306 (33%), Positives = 153/306 (50%), Gaps = 38/306 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ + G SKG GFV FS+PEEA++A++EMNG++IG KPLYVA+AQR+E+R A L + + Q
Sbjct: 348 LDQQGLSKGSGFVAFSTPEEASRALSEMNGKMIGKKPLYVAIAQRREERMARLQAHFSQ- 406
Query: 61 IANMRMQQMGQLFQPGSTGGYF--VPTLPQPQRFYGPTQMTQIRPQPR-WAAAPQMRPSG 117
+Q G P GY P L Q ++G + PQP ++ PQ+ P
Sbjct: 407 -----IQAPGLPTLPSGLPGYHPGTPRLAPHQLYFGQGTPGMMPPQPAGYSFQPQLLPGM 461
Query: 118 QTAQGFPNIP---QFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
+ A G PN Q + + + G N G V
Sbjct: 462 RAAVG-PNFVMPYQLQRQGQQGQRMGMRPGGNHQQMQQQQLLHRNTNQG----------V 510
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQP---AAAG--VQAVHVQGQEPL----TSTM 225
G G + V PQ +G + P A+G + H Q P+ +T
Sbjct: 511 RYVGNARNGIDSSVV------PQGFVGPVMPLPFEASGMPITPSHAQPTTPVPISTLTTA 564
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A P+ + MLGE+L+PL++ + P+ K+TGMLLE+D E+L+++E ++LK KV E
Sbjct: 565 LASATPENRMMMLGEQLYPLVECLEPDHVAKVTGMLLEMDQTEVLHLIESPDALKKKVAE 624
Query: 286 AVAVLQ 291
A+ VLQ
Sbjct: 625 AMQVLQ 630
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/79 (36%), Positives = 46/79 (58%), Gaps = 9/79 (11%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-- 59
++G+S+GFGFV F SP+ A AV ++NG K YV AQRK +R+A L +++ Q
Sbjct: 246 DQNGKSRGFGFVNFQSPDSAAAAVEKLNGMTFSDKVWYVGRAQRKGEREAELKAKFEQER 305
Query: 60 -------RIANMRMQQMGQ 71
+ AN+ ++ +G
Sbjct: 306 NSRYEKMKAANLYLKNLGD 324
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 16/49 (32%), Positives = 31/49 (63%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+ +G+SKG+GF+ F + E+A A+ +NG ++ + +YV R+ +R
Sbjct: 154 VDNNGQSKGYGFIQFENEEDAQSAINRLNGMLVNDREVYVGPFVRRLER 202
>gi|297739370|emb|CBI29360.3| unnamed protein product [Vitis vinifera]
Length = 633
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 107/302 (35%), Positives = 151/302 (50%), Gaps = 33/302 (10%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G SKG GFV F +PEEAT+A+ MNG++IG KPLYVA+AQRKE+RKA L +Q+ Q +
Sbjct: 333 GLSKGSGFVAFLTPEEATRALNVMNGKMIGRKPLYVAVAQRKEERKARLQAQFAQIRSPG 392
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGFP 124
M + Q PG G P L Q ++G P + P+ GF
Sbjct: 393 AMTPL-QSGVPGFHSG--APRLAPQQLYFG-------------QGTPGLIPTQPAGYGFQ 436
Query: 125 NIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGY 184
Q R I + + GQ MG R GG Q R +
Sbjct: 437 Q--QLMPGMRPGVAPNFIMPYQLQRQGQPGQR-MGVRRGGNSQQMQHQQQPLLHRNSNQS 493
Query: 185 NKYPVR-----NPGTQPQAQIGGIQPAAAGVQAVHVQ-------GQEPLTS--TMLAAAQ 230
+Y +P PQ +G + P V + V G P+++ + LA+
Sbjct: 494 YRYMANGRNGVDPSMVPQGLMGPVMPLPFDVSGMPVSPMDIQRTGPVPMSTLASALASTT 553
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P Q+ MLGE+LFPL++R+ E AGK+TGMLLE+D E+L+++E ++LK+KV EA+ VL
Sbjct: 554 PDNQRLMLGEQLFPLVERIERETAGKVTGMLLEMDQTEVLHLIESPDALKNKVAEAMDVL 613
Query: 291 QA 292
+A
Sbjct: 614 RA 615
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIG-SKPLYVALAQRKEDRKAHLASQYMQRIAN 63
G SK FGFV F S + A AV +NG K YV AQRK +R+A L +++ Q N
Sbjct: 229 GMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKN 288
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+ +G+SKG+GFV F E A A+ +NG +I K +YV L R ++R
Sbjct: 134 LDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERN 183
>gi|297821595|ref|XP_002878680.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
gi|297324519|gb|EFH54939.1| PAB4 binding protein 4 [Arabidopsis lyrata subsp. lyrata]
Length = 655
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 108/300 (36%), Positives = 152/300 (50%), Gaps = 48/300 (16%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G SKG GFV FS+ EA++ + EMNG+++G KPLYVALAQRKE+R+A L +Q+
Sbjct: 360 GTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQF------- 412
Query: 65 RMQQMGQLFQPGSTGGYFVPTLP------QPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQ 118
QM F PG G +P P Q FYG I QP + PQ+ P G
Sbjct: 413 --SQMRPAFIPGV--GPRMPIFPGGAPGLGQQIFYGQGSPPIIPHQPGFGYQPQLVP-GL 467
Query: 119 TAQGFPNIPQFRSAPRAS---TGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVS 175
FP + + PR +G +R + P Q M PRG G PG
Sbjct: 468 RPSFFPMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYM-QPQMMPRGRGYRYPPGG---- 522
Query: 176 AAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLT----STMLAAAQP 231
RN P +GG+ P A + + + +P++ +T LA A P
Sbjct: 523 --------------RNMPDGP--MLGGMVPVAYDMNGMPI--AQPMSAGQLATSLANATP 564
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
+Q+ +LGE L+PL+ ++ E A K+TGMLLE+D E+L++LE E+L +KV EA+ VL+
Sbjct: 565 AQQRTLLGESLYPLVDQIEHENAAKVTGMLLEMDQTEVLHLLESPEALNAKVSEALDVLR 624
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
DG+S+ FGFV F +PE+A +AV +NG+ K YV AQ+K +R+ L+ +Y Q
Sbjct: 256 DGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQ 311
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+S+G+GFV F + + A A+ ++NG+++ K ++V RKE+R++
Sbjct: 166 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERES 212
>gi|225438781|ref|XP_002283105.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|296082381|emb|CBI21386.3| unnamed protein product [Vitis vinifera]
Length = 654
Score = 129 bits (324), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 116/317 (36%), Positives = 163/317 (51%), Gaps = 52/317 (16%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G S+G GFV FS+ EEA++A+ +MNG+++ SKPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 350 NGISRGSGFVAFSTAEEASRALADMNGKMVASKPLYVALAQRKEDRRARLQAQFSQ---- 405
Query: 64 MRMQQMG-------QLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQ 112
MR M ++ PG+ P L Q Q FYG I PQP + P
Sbjct: 406 MRPAAMAPSVGPRMSMYPPGA------PGLGQ-QLFYGQGPPALIPPQPGFGYQHQLVPG 458
Query: 113 MRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ--APG 170
MRP G +P F P GQ + RP +S G GP+Q
Sbjct: 459 MRP------GAAPMPNF-FVPMVQPGQP-------NQRPGGRRS-----GTGPVQQTQQP 499
Query: 171 PASVSAAGRQTGGYNKYPV-RNPGTQPQAQI-GGIQPA---AAGVQAVHVQGQEPL---- 221
+ G +YP RN P + GG+ A AG+ +P+
Sbjct: 500 LPLMQQQMLPRGRVYRYPPGRNMADVPIPGVPGGMLSAPYDMAGMPFRDAAVSQPMPIGA 559
Query: 222 TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
+T LA A P +Q+ +LGE L+PL+ ++ E+A K+TGMLLE+D E+L++LE E+LK+
Sbjct: 560 LATALANAPPDQQRTLLGENLYPLVDQLEHEMAAKVTGMLLEMDQTEVLHLLESPEALKA 619
Query: 282 KVEEAVAVLQAHQAKQA 298
KV EA+ VL+ +QA
Sbjct: 620 KVAEAMEVLRNVAQQQA 636
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F + ++A ++V +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 247 DGKSKCFGFVNFENADDAARSVEALNGKKFDDKEWYVGKAQKKTEREVELKGRFEQSL 304
Score = 43.9 bits (102), Expect = 0.096, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 31/47 (65%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKG+GFV F + E A A ++NG ++ K +YV RK++R++
Sbjct: 157 GQSKGYGFVQFDNEESAKNATDKLNGMLLNDKQVYVGPFVRKQERES 203
>gi|339246497|ref|XP_003374882.1| putative RNA recognition motif protein [Trichinella spiralis]
gi|316971853|gb|EFV55580.1| putative RNA recognition motif protein [Trichinella spiralis]
Length = 758
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 67/118 (56%), Positives = 85/118 (72%), Gaps = 9/118 (7%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+SKGFGFVCFSSP+EAT+AV+EMN + +G+KPLYVALAQRKEDRKA LASQ +QR+
Sbjct: 303 DEKGQSKGFGFVCFSSPDEATRAVSEMNNQKLGNKPLYVALAQRKEDRKAQLASQLVQRV 362
Query: 62 ANMRMQQ--MGQLFQPGSTGGYFVPTLPQ--PQRFYG--PTQMTQIRPQPRWAAAPQM 113
+R Q MGQ++ S GYF PT+PQ P+ + P Q+R PRW ++P M
Sbjct: 363 NALRFQTVGMGQMY---SGSGYFFPTMPQAGPRAYLTALPAGAPQVRATPRWMSSPTM 417
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 31/58 (53%), Positives = 39/58 (67%), Gaps = 1/58 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQY 57
M ED +SKGFGFV F +PE+A AV EMN + S K LYV AQ+K +R+A L +Y
Sbjct: 198 MKEDDKSKGFGFVSFENPEDAEAAVKEMNEYQLPSGKKLYVGRAQKKAERQAELKRRY 255
>gi|27883566|gb|AAO25762.1| polyadenylate-binding protein [Ictalurus punctatus]
Length = 95
Score = 129 bits (323), Expect = 2e-27, Method: Compositional matrix adjust.
Identities = 63/75 (84%), Positives = 70/75 (93%)
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 21 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 80
Query: 272 MLEHNESLKSKVEEA 286
M E +ESL+SKVEEA
Sbjct: 81 MFESHESLRSKVEEA 95
>gi|173421|gb|AAA35320.1| poly(A)-binding protein, partial [Schizosaccharomyces pombe]
Length = 628
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 114/293 (38%), Positives = 149/293 (50%), Gaps = 51/293 (17%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+SKGFGFVC+++PEEA KAVTEMN R++ KPLYVALAQRKE R++ L +Q R
Sbjct: 384 DEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQAR- 442
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
R+QQ Q + G +P Q YG T P P P+ +
Sbjct: 443 NQFRLQQ-----QVAAAAG-----IPAVQ--YGATGPLIYGP----GGYPI--PAAVNGR 484
Query: 122 GFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGP-MQAPGPASVSAAGRQ 180
G P +P G + S + R G P M A GP V A GR
Sbjct: 485 GMPMVPGHNGPMPMYPGMPPL------------SSLLEVRPGYPGMNARGP--VPAQGR- 529
Query: 181 TGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAV-HVQGQ-EPLTSTMLAAAQPQEQKQML 238
P+ PG+ P A PA A +AV V G E T+ LAA + +KQ+L
Sbjct: 530 -------PMMMPGSVPSA-----GPAEA--EAVPAVPGMPERFTAADLAAVPEESRKQVL 575
Query: 239 GERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
GE L+P + +L+GKITGMLLE+ N+ELL +LE + +L +V EA+ VLQ
Sbjct: 576 GELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVLQ 628
Score = 49.7 bits (117), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++ + +GFGFV +++ E A KAV E+N + K LYV AQ+K +R+ L Y Q
Sbjct: 281 DQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKAYEQ-- 338
Query: 62 ANMRMQQMGQ 71
M++++M +
Sbjct: 339 --MKLEKMNK 346
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHL 53
+ E G +KG+GFV F S E A A+ +NG ++ K +YV + +R KA+
Sbjct: 187 VDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANF 246
Query: 54 ASQYMQRI-ANMRMQQMGQLF 73
+ Y++ + + Q+ LF
Sbjct: 247 TNVYIKNLDTEITEQEFSDLF 267
>gi|19114289|ref|NP_593377.1| mRNA export shuttling protein [Schizosaccharomyces pombe 972h-]
gi|3123239|sp|P31209.2|PABP_SCHPO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|2104439|emb|CAB08762.1| mRNA export shuttling protein [Schizosaccharomyces pombe]
Length = 653
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 147/304 (48%), Gaps = 73/304 (24%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+SKGFGFVC+++PEEA KAVTEMN R++ KPLYVALAQRKE R++ L +Q R
Sbjct: 398 DEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQAR- 456
Query: 62 ANMRMQQMGQ------LFQPGST-------GGYFVPTLPQPQRFYGPTQMTQIRPQPRWA 108
R+QQ Q G+T GGY +P + P P P +
Sbjct: 457 NQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVNGRGM--PMVPGHNGPMPMYP 514
Query: 109 AAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSAR-PITGQSTMGPRGGGPMQ 167
P P+G A G+P M+AR P+ Q G PM
Sbjct: 515 GMPTQFPAGGPAPGYP---------------------GMNARGPVPAQ-------GRPMM 546
Query: 168 APGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
PG SV +AG A+ + PA G+ E T+ LA
Sbjct: 547 MPG--SVPSAG------------------PAEAEAV-PAVPGM-------PERFTAADLA 578
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
A + +KQ+LGE L+P + +L+GKITGMLLE+ N+ELL +LE + +L +V EA+
Sbjct: 579 AVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAI 638
Query: 288 AVLQ 291
VLQ
Sbjct: 639 GVLQ 642
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++ + +GFGFV +++ E A KAV E+N + K LYV AQ+K +R+ L +Y Q
Sbjct: 295 DQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQ-- 352
Query: 62 ANMRMQQMGQ 71
M++++M +
Sbjct: 353 --MKLEKMNK 360
Score = 45.1 bits (105), Expect = 0.039, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHL 53
+ E G +KG+GFV F S E A A+ +NG ++ K +YV + +R KA+
Sbjct: 201 VDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANF 260
Query: 54 ASQYMQRI-ANMRMQQMGQLF 73
+ Y++ + + Q+ LF
Sbjct: 261 TNVYIKNLDTEITEQEFSDLF 281
>gi|126137970|ref|XP_001385508.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
gi|158513407|sp|A3LXL0.1|PABP_PICST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|126092786|gb|ABN67479.1| Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein) (PABP) (ARS consensus binding
protein ACBP-67) (Polyadenylate tail-binding protein)
[Scheffersomyces stipitis CBS 6054]
Length = 632
Score = 128 bits (322), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 147/313 (46%), Gaps = 86/313 (27%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVCFSSPEEATKA+TEMN R+ KPLYVALAQRK+ R++ L Q R
Sbjct: 369 VDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQLEQQIQAR 428
Query: 61 IANMRMQQM-------GQLFQPGSTG--GYFVPTLPQPQRFYGPT-QMTQIRPQP----- 105
MRMQ GQ P G G+F P F GP QM R QP
Sbjct: 429 -NQMRMQNAAATGGIPGQFIPPMFYGQQGFFPPNGRGNAPFPGPNPQMIMRRGQPFGGPE 487
Query: 106 RWAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGP 165
+W P+ P+GQ +P + P+A + G N+
Sbjct: 488 QW---PRPGPNGQP------VPVYGIPPQAYSD---FNGQNI------------------ 517
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
RQ GY YP RN Q Q L + +
Sbjct: 518 -------------RQQRGY--YPNRNQNKGRQ--------------------QRDL-AAI 541
Query: 226 LAAAQPQEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
+A+A P +QK++LGE L+P I + PE AGKITGM+L++DN E+L +LE +E +
Sbjct: 542 IASAPPDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALLEDDELFTN 601
Query: 282 KVEEAVAVLQAHQ 294
E+A+ + ++
Sbjct: 602 HFEDALTAFEEYK 614
>gi|195584481|ref|XP_002082033.1| GD11342 [Drosophila simulans]
gi|194194042|gb|EDX07618.1| GD11342 [Drosophila simulans]
Length = 148
Score = 128 bits (321), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 78/156 (50%), Positives = 101/156 (64%), Gaps = 13/156 (8%)
Query: 146 NMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGI 203
N AR ITGQ T P MQ PG A ++T Y KY +RNP P Q+
Sbjct: 3 NTGARAITGQQTAAPN----MQIPGAQIAGGAQQRTSNY-KYTSNMRNP---PVPQLHQT 54
Query: 204 QPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLE 263
QP +Q + E L +++LA A+PQEQKQ+LGERL+P+I+ M+ LAGKITGMLLE
Sbjct: 55 QPIPQQLQG---KNSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLE 111
Query: 264 IDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
I+N+ELL+M+E E+LK+KVEEAVAVLQ H+ + A
Sbjct: 112 IENSELLHMIEDQEALKAKVEEAVAVLQVHRVTEPA 147
>gi|431894424|gb|ELK04224.1| Polyadenylate-binding protein 1-like protein [Pteropus alecto]
Length = 512
Score = 127 bits (320), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 100/284 (35%), Positives = 141/284 (49%), Gaps = 19/284 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G S+GFGFV F EEA KAV +MNG+ + + LYV AQ++ +R+ L ++ Q
Sbjct: 230 DDSGHSRGFGFVNFEKHEEAQKAVMDMNGKEVRGRLLYVGRAQKRMERQNELKRKFEQ-- 287
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
M+ ++ + G +V L + P +A M G + +
Sbjct: 288 --MKQDRLNRYHVRGVN--LYVKNLDDS--INDEKLRKEFSPYGMITSAKVMTEGGHS-K 340
Query: 122 GFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQT 181
GF + F S A+ T + G + +P+ + + R
Sbjct: 341 GFGFVC-FSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQRLSTVRAL 399
Query: 182 GGYNKYPVRNPGTQPQAQIGGIQPAAAGVQ--AVHVQGQEPLTSTMLAAAQPQEQKQMLG 239
GG P+ QP PA VQ AV + G+EPLT++MLAAA EQKQM+G
Sbjct: 400 GG----PLLGSFQQPANYF---LPAVPQVQEPAVCIPGKEPLTASMLAAAPLHEQKQMIG 452
Query: 240 ERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
ERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL +KV
Sbjct: 453 ERLYPLIYDVHTQLAGKITGMLLEIDNSELLLMLESPESLNAKV 496
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/93 (65%), Positives = 73/93 (78%), Gaps = 6/93 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 333 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 392
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQPQ 90
++ +R +G QP + YF+P +PQ Q
Sbjct: 393 LSTVRALGGPLLGSFQQPAN---YFLPAVPQVQ 422
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 19/59 (32%), Positives = 38/59 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ +D S+GFGFV F + E A A++ MNG ++ + ++V + +++R+A L ++ M+
Sbjct: 131 VCDDHGSRGFGFVHFETHEAAQLAISTMNGMLLNDRKVFVGHFKSRQEREAELGARAME 189
>gi|448112633|ref|XP_004202146.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
gi|359465135|emb|CCE88840.1| Piso0_001626 [Millerozyma farinosa CBS 7064]
Length = 625
Score = 127 bits (320), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 109/303 (35%), Positives = 146/303 (48%), Gaps = 65/303 (21%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVCFSSPEEATKA+TEMN R+ KPLYVALAQRK+ R++ L Q R
Sbjct: 367 VDEHGKSKGFGFVCFSSPEEATKAITEMNQRMFHGKPLYVALAQRKDVRRSQLEQQIQAR 426
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
MRMQ G G F+P + FYG QP + P+G+ +
Sbjct: 427 -NQMRMQNAAAT---GGIPGQFIPPM-----FYG--------QQPGF-----FPPNGRGS 464
Query: 121 QGFPNIPQFRSAPRAST----GQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSA 176
FP PR GQ G N P+ G + P G A G
Sbjct: 465 APFPGPNPQMMVPRGQIPPPQGQWPRAGPNGQPVPVYG---IPPVYGDFAAANG------ 515
Query: 177 AGRQTGGYNKYPVR-NPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQK 235
GRQ GY YP R N +PQ + + +LA+A +QK
Sbjct: 516 -GRQQRGY--YPNRQNQKGRPQKDL----------------------AALLASAPVDQQK 550
Query: 236 QMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
++LGE L+P I + PE AGKITGM+L++DN E+L +LE + + E+A+ +
Sbjct: 551 RILGEELYPKIVSTGRAQEPEAAGKITGMMLDLDNQEILALLEDDALFNNHFEDALTAYE 610
Query: 292 AHQ 294
++
Sbjct: 611 EYK 613
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 32/71 (45%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
+G+SKGFGFV F S E A KAV E+N + I + LYV AQ+K +R L QY R+
Sbjct: 267 EGKSKGFGFVNFESHEAAVKAVEELNDKDINGQKLYVGRAQKKRERIEELKRQYEAARLE 326
Query: 63 NMRMQQMGQLF 73
+ Q LF
Sbjct: 327 KLSKYQGVNLF 337
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/82 (31%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SK FGFV + + E A A+ +NG ++ + +YV K+DR KA+
Sbjct: 172 DEQGNSKCFGFVHYETAEAAKAAIENVNGMLLNDREVYVGKHVSKKDRESKFEEMKANFT 231
Query: 55 SQYMQRIA-NMRMQQMGQLFQP 75
+ Y++ I ++M +LF+P
Sbjct: 232 NVYVKNIDLGFSEEEMRKLFEP 253
>gi|357120111|ref|XP_003561773.1| PREDICTED: polyadenylate-binding protein-like [Brachypodium
distachyon]
Length = 714
Score = 127 bits (319), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 152/313 (48%), Gaps = 56/313 (17%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G SKGFGFVC+++P+EA AV+ M G + KPLYVA+AQRKEDRKA L ++ +
Sbjct: 415 MRDDKGISKGFGFVCYNTPDEAKCAVSSMRGVMFYDKPLYVAIAQRKEDRKARLEQRFAE 474
Query: 60 RIANMRMQQMGQLFQPGSTGGYFV-PTLPQPQRFYGPTQMTQIRP----QPRWAAAPQMR 114
+A M + + G YF P+ PQ GP++ + P W +
Sbjct: 475 -LATM-VGAASPVIPTGYPHVYFAHPSTHFPQ---GPSRQGFMYPPMGLGQEWRQ--NVF 527
Query: 115 PSGQTAQGF-----PNIP-QFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA 168
PS Q PN P Q+R+ TG NM P T A
Sbjct: 528 PSPHNIQQIHAPLMPNTPRQYRNNRGRMTG-------NMMTFPHTVNYVS--------HA 572
Query: 169 PGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTS----- 223
+ RQ G+ KY PA + + +P++S
Sbjct: 573 QTAKDFMSMSRQQFGHAKYI----------------PADVMTSGLAIHHSDPVSSVNDPF 616
Query: 224 -TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++LAAA P +Q+ MLG RL+PL++R +PELA KITGMLL++D+++++ ++ + L +K
Sbjct: 617 TSLLAAAPPDQQRNMLGNRLYPLVERYHPELASKITGMLLDLDSSDVVLLICSPDMLSAK 676
Query: 283 VEEAVAVLQAHQA 295
+ E +LQ QA
Sbjct: 677 INECAQLLQGQQA 689
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 31/51 (60%), Positives = 37/51 (72%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
+DG SKGFGFV F SP+ A KA MNG +GSK LYVA AQ+K +RK +L
Sbjct: 315 DDGTSKGFGFVSFKSPDSAKKAKEAMNGIPLGSKSLYVARAQKKAERKQYL 365
Score = 41.6 bits (96), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 38/70 (54%), Gaps = 4/70 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++DG S+G+GFV F++ E A A+ +N + L+VA +K +R A+ +Y
Sbjct: 224 NDDGTSRGYGFVQFAAQESADIAIENLNNSHFEGRQLHVAHFIKKSERSANNDDKY---- 279
Query: 62 ANMRMQQMGQ 71
N+ M+ +
Sbjct: 280 TNLYMKNLDD 289
>gi|356499763|ref|XP_003518706.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 646
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 111/315 (35%), Positives = 156/315 (49%), Gaps = 50/315 (15%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G S+G GFV FS+P+EA++A+ EMNG+++ SKPLYV LAQRKEDR+A L +Q+ A
Sbjct: 346 NGISRGSGFVAFSTPDEASRALLEMNGKMVVSKPLYVTLAQRKEDRRARLQAQF----AQ 401
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLP------QPQRFYGPTQMTQIRPQPRWA----AAPQM 113
MR M P S G VP P Q FY I QP + P M
Sbjct: 402 MRPVGM-----PPSVGPR-VPMYPPGGPGIGQQIFYAQGPPAIIPSQPGFGYQQQLVPGM 455
Query: 114 RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGA-NMSARPITGQ-STMGPRGGGPMQAPGP 171
RP F +P + + GA S +P+ M PRG PG
Sbjct: 456 RPGAAPVPNF-FVPMVQQGQQGQRPGGRRTGAVQQSQQPVPMMPQQMLPRGRVYRYPPGR 514
Query: 172 A--SVSAAGRQTGGYNK------YPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTS 223
VS G G ++ P+R+ Q +G + +
Sbjct: 515 GMPDVSMPGVAGGMFSVPYDVGGMPLRDASISQQIPVGAL-------------------A 555
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
T LA A P++Q+ MLGE L+PL++++ P+ A K+TGMLLE+D E+L++LE E+LK+KV
Sbjct: 556 TALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAKV 615
Query: 284 EEAVAVLQAHQAKQA 298
EA+ VL+ +QA
Sbjct: 616 AEAMDVLRNVAQQQA 630
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 243 DGKSKCFGFVNFENADDAARAVEALNGKKFDDKEWYVGKAQKKSERENELKQRFEQSM 300
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK++R++
Sbjct: 153 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERES 199
>gi|115452253|ref|NP_001049727.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|108707490|gb|ABF95285.1| polyadenylate binding protein, types 1, 2, 3, 4 family protein,
expressed [Oryza sativa Japonica Group]
gi|113548198|dbj|BAF11641.1| Os03g0278500 [Oryza sativa Japonica Group]
gi|215678518|dbj|BAG92173.1| unnamed protein product [Oryza sativa Japonica Group]
gi|222624669|gb|EEE58801.1| hypothetical protein OsJ_10348 [Oryza sativa Japonica Group]
Length = 647
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 103/300 (34%), Positives = 145/300 (48%), Gaps = 41/300 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVC+++PEEA AV+ M G + KPLYVA+AQRKE+R+A L ++ + +
Sbjct: 353 DEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAE-L 411
Query: 62 ANMRMQQMGQLFQPGSTGGYF------VPTLPQPQRF-YGPTQMTQIRPQPRWAAAPQMR 114
A M + + G YF +P P Q F Y P ++Q W M
Sbjct: 412 ATM-VGATSPVIPTGYPQFYFAHPSTHLPQSPGRQGFMYPPIGISQ-----EWRH--NMF 463
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
PS Q + P R+ PR NM T P P +
Sbjct: 464 PSSHNIQQIHS-PIMRNTPRQYRNNRGRMNGNMMHFHHTVNYV-------PHAQPAKEFM 515
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVH---VQGQEPLTSTMLAAAQP 231
S + RQ + KY P + A G+ H + + +LA A P
Sbjct: 516 SMS-RQRFSHAKYI-------PNDIM------ANGLAIHHGDSISSMNDAFNNLLATAPP 561
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
+EQK MLG RL+PL++R +P+LA KITGMLLE+ N+E++ +L + L +K+EE V +LQ
Sbjct: 562 EEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLLQ 621
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 42/59 (71%), Gaps = 5/59 (8%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+DG SKGFGFV F +PE A +A MNG ++GSK LYVA AQ+K +RK QY+QR+
Sbjct: 251 DDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERK-----QYLQRL 304
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+EDG S+G+GFV F+ E A ++ +N + L+VA +K +R + +Y
Sbjct: 160 NEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKY---- 215
Query: 62 ANMRMQQMGQ 71
N+ M+ +
Sbjct: 216 TNLYMKNLDD 225
>gi|324509105|gb|ADY43836.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 661
Score = 127 bits (319), Expect = 6e-27, Method: Compositional matrix adjust.
Identities = 67/117 (57%), Positives = 85/117 (72%), Gaps = 11/117 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++GRSKGFGFVCF P+EATKAVTEMNG+++ +KPLYVALAQRKEDRKA LASQYMQR+
Sbjct: 339 DDNGRSKGFGFVCFEKPDEATKAVTEMNGKMMCTKPLYVALAQRKEDRKAQLASQYMQRL 398
Query: 62 ANMRMQQM----GQLFQPGSTGGYFVPTLPQPQR--FYGPTQMT---QIR-PQPRWA 108
A++RM G ++ PG+ GG+FV + Q QR + PT Q+R PRW+
Sbjct: 399 ASIRMHNAGAMPGTMYTPGN-GGFFVSSALQNQRAATFMPTATIPGAQMRGSAPRWS 454
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 15/152 (9%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQY-MQR 60
DG+SKGFGFV F +PE+A KAV EM+ + + LYV AQ+K +R A L +Y Q+
Sbjct: 236 DGKSKGFGFVAFENPEDAEKAVNEMHEYQLPDSERKLYVCRAQKKNERSAELKRRYEQQK 295
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+ M+ Q L+ L Q YG + +A M +
Sbjct: 296 VERMQRYQGVNLYVKNLDDTVDDEVLRQNFESYG-----------KITSAKVMCDDNGRS 344
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
+GF + F A+ T + G M +P+
Sbjct: 345 KGFGFVC-FEKPDEATKAVTEMNGKMMCTKPL 375
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 17/39 (43%), Positives = 26/39 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYV 40
E+ SKG+GFV F + E A KA+ ++NG ++ K +YV
Sbjct: 141 DEESNSKGYGFVHFETEESAQKAIEKVNGMLLEGKKVYV 179
>gi|218192545|gb|EEC74972.1| hypothetical protein OsI_11001 [Oryza sativa Indica Group]
Length = 647
Score = 127 bits (318), Expect = 7e-27, Method: Compositional matrix adjust.
Identities = 104/300 (34%), Positives = 145/300 (48%), Gaps = 41/300 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVC+++PEEA AV+ M G + KPLYVA+AQRKE+R+A L ++ + +
Sbjct: 353 DEKGISKGFGFVCYNTPEEAKCAVSNMRGVMFYGKPLYVAIAQRKEERRAKLEQRFAE-L 411
Query: 62 ANMRMQQMGQLFQPGSTGGYF------VPTLPQPQRF-YGPTQMTQIRPQPRWAAAPQMR 114
A M + + G YF +P P Q F Y P ++Q W M
Sbjct: 412 ATM-VGATSPVIPTGYPQFYFAHPSTHLPQSPGRQGFMYPPIGISQ-----EWRH--NMF 463
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
PS Q + P R+ PR NM T P P +
Sbjct: 464 PSSHNIQQIHS-PIMRNTPRQYRNNRGRMNGNMMHFHHTVNYV-------PHAQPAKEFM 515
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLT---STMLAAAQP 231
S + RQ + KY P + A G+ H L + +LA A P
Sbjct: 516 SMS-RQRFSHAKYI-------PNDVM------ANGLAIHHGDSISSLNDAFNNLLATAPP 561
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
+EQK MLG RL+PL++R +P+LA KITGMLLE+ N+E++ +L + L +K+EE V +LQ
Sbjct: 562 EEQKNMLGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLLQ 621
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 38/51 (74%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
+DG SKGFGFV F +PE A +A MNG ++GSK LYVA AQ+K +RK +L
Sbjct: 251 DDGTSKGFGFVSFQNPESAKRAKESMNGMLLGSKTLYVARAQKKAERKQYL 301
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 4/70 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+EDG S+G+GFV F+ E A ++ +N + L+VA +K +R + +Y
Sbjct: 160 NEDGTSRGYGFVQFALQESADASIQNLNNSHFCGRQLHVATFIKKSERSTNNDDKY---- 215
Query: 62 ANMRMQQMGQ 71
N+ M+ +
Sbjct: 216 TNLYMKNLDD 225
>gi|18677184|gb|AAL78224.1|AF345796_1 hypothetical protein Hgg-30 [Heterodera glycines]
Length = 219
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 63/94 (67%), Positives = 71/94 (75%), Gaps = 5/94 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E GRSKGFGFVCF +EATKAV EMN +II +KPLYVALAQRKEDRKA LASQYMQR+
Sbjct: 83 DEHGRSKGFGFVCFEKADEATKAVVEMNNKIIENKPLYVALAQRKEDRKAQLASQYMQRL 142
Query: 62 ANMRMQQ----MGQLFQPGSTGGYFVPTLPQPQR 91
A MRMQ MG ++ P S GG+F+P Q QR
Sbjct: 143 AAMRMQNPAGLMGTMYAPAS-GGFFLPQAIQNQR 175
>gi|260944998|ref|XP_002616797.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
gi|238850446|gb|EEQ39910.1| hypothetical protein CLUG_04038 [Clavispora lusitaniae ATCC 42720]
Length = 620
Score = 127 bits (318), Expect = 8e-27, Method: Compositional matrix adjust.
Identities = 110/302 (36%), Positives = 147/302 (48%), Gaps = 66/302 (21%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVCFS+PEEATKA+TEMN R++ KPLYVALAQRK+ R++ L Q R
Sbjct: 368 VDETGKSKGFGFVCFSAPEEATKAITEMNQRMVLGKPLYVALAQRKDVRRSQLEQQIQAR 427
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTL---PQPQRFYGPTQMTQIRPQPRWAAAPQ-MRPS 116
MRMQ PG F+P + QP F G + P P PQ M P
Sbjct: 428 -NQMRMQNAAAAGIPGQ----FMPPMFYGQQPGFFPGNGRNNGPFPGPN----PQMMMPR 478
Query: 117 GQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSA 176
GQ P PRA G N P+ G + GP
Sbjct: 479 GQMP------PPQGQWPRA--------GPNGQPVPVYGMPPVYNDFNGP----------- 513
Query: 177 AGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQ 236
GRQ GY +P + Q GG + AA ++A+A P +QK+
Sbjct: 514 NGRQQRGY--FP------NNRNQKGGRRDLAA----------------IIASAPPDQQKR 549
Query: 237 MLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
+LGE L+P I + PE AGKITGM+L++DN E+L +LE +E + E+A+ +
Sbjct: 550 ILGEELYPKIVSTGKAQEPEAAGKITGMMLDLDNQEILALLEDDELFNNHFEDALTAYEE 609
Query: 293 HQ 294
++
Sbjct: 610 YK 611
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
+G+SKGFGF+ F + + A KAV E+N + + + +YV AQ+K +R L QY R+
Sbjct: 268 EGKSKGFGFINFENHDAAVKAVEELNDKEVNGQKIYVGRAQKKRERIEELKKQYETTRLE 327
Query: 63 NMRMQQMGQLF 73
+ Q LF
Sbjct: 328 KLSKYQGVNLF 338
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 24/83 (28%), Positives = 37/83 (44%), Gaps = 1/83 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E GRSK FGFV + + E A A+ +NG + + ++V K+DR A +
Sbjct: 173 DEHGRSKCFGFVHYETAEAADAAIENVNGMSLNDREVFVGKHISKKDRVAKF-EEMKANF 231
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP 84
N+ ++ G F F P
Sbjct: 232 TNVFVKNFGSDFTEAELAAMFEP 254
>gi|15227815|ref|NP_179916.1| poly(A) binding protein 4 [Arabidopsis thaliana]
gi|2642429|gb|AAB87097.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|15292851|gb|AAK92796.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|19310779|gb|AAL85120.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330252352|gb|AEC07446.1| poly(A) binding protein 4 [Arabidopsis thaliana]
Length = 662
Score = 127 bits (318), Expect = 9e-27, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 153/310 (49%), Gaps = 66/310 (21%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G SKG GFV FS+ EA++ + EMNG+++G KPLYVALAQRKE+R+A L +Q+
Sbjct: 365 GTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQF------- 417
Query: 65 RMQQMGQLFQPGS-------TGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSG 117
QM F PG TGG P L Q Q FYG I QP + PQ+ P
Sbjct: 418 --SQMRPAFIPGVGPRMPIFTGG--APGLGQ-QIFYGQGPPPIIPHQPGFGYQPQLVPGM 472
Query: 118 QTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPR------GGGPM----Q 167
+ P F P GQ GPR G GPM Q
Sbjct: 473 R--------PAFFGGPMMQPGQ------------------QGPRPGGRRSGDGPMRHQHQ 506
Query: 168 APGPASVSAAGRQTGGYNKYPV--RNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLT--- 222
P P + GY +YP RN P GG+ P A + + +P++
Sbjct: 507 QPMPYMQPQMMPRGRGY-RYPSGGRNMPDGPMP--GGMVPVAYDMNVMPY--SQPMSAGQ 561
Query: 223 -STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
+T LA A P +Q+ +LGE L+PL+ ++ E A K+TGMLLE+D E+L++LE E+L +
Sbjct: 562 LATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNA 621
Query: 282 KVEEAVAVLQ 291
KV EA+ VL+
Sbjct: 622 KVSEALDVLR 631
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
DG+S+ FGFV F +PE+A +AV +NG+ K YV AQ+K +R+ L+ +Y Q
Sbjct: 261 DGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQ 316
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+S+G+GFV F + + A A+ ++NG+++ K ++V RKE+R++
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERES 217
>gi|13430610|gb|AAK25927.1|AF360217_1 putative poly(A) binding protein [Arabidopsis thaliana]
Length = 662
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 114/310 (36%), Positives = 153/310 (49%), Gaps = 66/310 (21%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G SKG GFV FS+ EA++ + EMNG+++G KPLYVALAQRKE+R+A L +Q+
Sbjct: 365 GTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQF------- 417
Query: 65 RMQQMGQLFQPGS-------TGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSG 117
QM F PG TGG P L Q Q FYG I QP + PQ+ P
Sbjct: 418 --SQMRPAFIPGVGPRMPIFTGG--APGLGQ-QIFYGQGPPPIIPHQPGFGYQPQLVPGM 472
Query: 118 QTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPR------GGGPM----Q 167
+ P F P GQ GPR G GPM Q
Sbjct: 473 R--------PAFFGGPMMQPGQ------------------QGPRPGGRRSGDGPMRHQHQ 506
Query: 168 APGPASVSAAGRQTGGYNKYPV--RNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLT--- 222
P P + GY +YP RN P GG+ P A + + +P++
Sbjct: 507 QPMPYMQPQMMPRGRGY-RYPSGGRNMPDGPMP--GGMVPVAYDMNVMPY--SQPMSAGQ 561
Query: 223 -STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
+T LA A P +Q+ +LGE L+PL+ ++ E A K+TGMLLE+D E+L++LE E+L +
Sbjct: 562 LATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNA 621
Query: 282 KVEEAVAVLQ 291
KV EA+ VL+
Sbjct: 622 KVSEALDVLR 631
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
DG+S+ FGFV F +PE+A +AV +NG+ K YV AQ+K +R+ L+ +Y Q
Sbjct: 261 DGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQ 316
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+S+G+GFV F + + A A+ ++NG+++ K ++V RKE+R++
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERES 217
>gi|119596294|gb|EAW75888.1| hCG2019100, isoform CRA_b [Homo sapiens]
Length = 168
Score = 126 bits (317), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 76/148 (51%), Positives = 91/148 (61%), Gaps = 29/148 (19%)
Query: 154 GQSTMGPRGGGPMQAPG----PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAG 209
G T GP G G PG P S+A T Y V+ P
Sbjct: 39 GTQTTGPSGVG-CCTPGRPLLPCKCSSAAHST-----YRVQEP----------------- 75
Query: 210 VQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAEL 269
AVH+ GQEPLT++MLAAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+EL
Sbjct: 76 --AVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSEL 133
Query: 270 LYMLEHNESLKSKVEEAVAVLQAHQAKQ 297
L MLE ESL +K++EAVAVLQAHQA +
Sbjct: 134 LLMLESPESLHAKIDEAVAVLQAHQAME 161
>gi|148708389|gb|EDL40336.1| mCG50349 [Mus musculus]
Length = 185
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 69/94 (73%), Positives = 79/94 (84%), Gaps = 3/94 (3%)
Query: 212 AVHVQGQEPLTSTMLAAA--QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAEL 269
AVHVQGQEPLT++MLAAA Q Q+QKQMLGERLFP+IQ M+ LAGKITGMLLEIDN+EL
Sbjct: 43 AVHVQGQEPLTASMLAAAPLQEQKQKQMLGERLFPIIQTMHSNLAGKITGMLLEIDNSEL 102
Query: 270 LYMLEHNESLKSKV-EEAVAVLQAHQAKQAAVKK 302
L+MLE SL SKV EEAV VLQAH AK+ A ++
Sbjct: 103 LHMLESPVSLCSKVDEEAVEVLQAHHAKKEAAQR 136
>gi|326516828|dbj|BAJ96406.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 744
Score = 126 bits (316), Expect = 1e-26, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 148/311 (47%), Gaps = 48/311 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G S+G GFV F S ++A++A+ EMN +++G+KPLYVALAQRKEDRKA L +Q+ Q
Sbjct: 441 DSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRKEDRKARLQAQFSQMR 500
Query: 62 ANMRMQQMG---QLFQPGSTGGYFVPTLPQPQRFYG-PTQMTQIRPQPRWA----AAPQM 113
Q +G Q+ PG G Q FYG P I PQP + P M
Sbjct: 501 PVPMAQTVGPRMQMLPPGVPVGQ--------QMFYGQPPAF--INPQPGFGFQQPFMPGM 550
Query: 114 RPSGQTAQGF----------PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGG 163
RP G F P P R A Q++ G G+ P G
Sbjct: 551 RPGGAPMPNFMMPMVQQGQQPQRPAGRRAGAGGMQQSMQMGQQQMMGRGGGRGYRYPTGR 610
Query: 164 GPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTS 223
G P PA G T Y G P G QP G A
Sbjct: 611 G---MPDPAMHGVGGVMTSPYEM------GGMPMRDAGASQPVPIGALA----------- 650
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
+ LA + P+ Q+ MLGE L+PL+ ++ + A K+TGMLLE+D E+L++LE ++LK+KV
Sbjct: 651 SALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKV 710
Query: 284 EEAVAVLQAHQ 294
EA+ V ++ Q
Sbjct: 711 AEAMEVFRSAQ 721
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DGRSK FGFV F SP+EA AV ++NG+ K YV AQ+K +R+ L ++ + +
Sbjct: 340 DGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREMELKEKFEKNL 397
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
G SKG+GFV + E A A+ ++NG ++ K +YV RK++R
Sbjct: 250 GESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERD 295
>gi|357145576|ref|XP_003573691.1| PREDICTED: polyadenylate-binding protein 2-like [Brachypodium
distachyon]
Length = 663
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 111/319 (34%), Positives = 163/319 (51%), Gaps = 52/319 (16%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G +KG GFV F S E+A++A+ MNG+++GSKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 359 DSNGVNKGSGFVAFKSSEDASRALVAMNGKMVGSKPLYVALAQRKEERRARLQAQFSQMR 418
Query: 62 ANMRMQQMGQ---LFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQMR 114
+ + ++ PG VP + Q Q FYG + PQP + P MR
Sbjct: 419 PVVMPPPVAPRMPMYPPG------VPGMGQ-QMFYGQPPPPFVNPQPGFGFQQHMIPGMR 471
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIR------GANMSARPI-TGQSTMGPRGGGPMQ 167
P G +P F P GQ R GA +P+ G M PRGG
Sbjct: 472 P------GVAPMPNF-VMPMVQQGQQPQRPSGRRAGAGGMQQPMPMGHQQMLPRGG---- 520
Query: 168 APGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPA--AAGVQAVHVQG---QEP-- 220
GGY R P +GG+ P+ G ++ G Q P
Sbjct: 521 -------------RGGYRYASGRGMPDSPFRGVGGMVPSPYEMGRMTLNDNGAPQQVPSG 567
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
++ LA + P++Q+ MLGE L+PL+ ++ + A K+TGMLLE+D E+L+++E ++LK
Sbjct: 568 TLASALANSPPEQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALK 627
Query: 281 SKVEEAVAVLQAHQAKQAA 299
SKV EA+ VL++ Q + +A
Sbjct: 628 SKVAEAMDVLRSAQQQTSA 646
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 40/56 (71%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++DG+S+ FGFV F +P++A +AV ++NG+ + K LYV AQ+K +R+ L ++
Sbjct: 255 ADDGKSRCFGFVNFENPDDAARAVEDLNGKKLDDKELYVGRAQKKSEREMQLKEKF 310
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 30/51 (58%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLAS 55
G SKG+GFV + E A A+ E+NG ++ K +YV RK++R+ S
Sbjct: 167 GESKGYGFVQYEQDESAQNAINELNGMLLNDKKVYVGPFVRKQERENVFGS 217
>gi|344304706|gb|EGW34938.1| hypothetical protein SPAPADRAFT_58066 [Spathaspora passalidarum
NRRL Y-27907]
Length = 508
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 112/300 (37%), Positives = 150/300 (50%), Gaps = 58/300 (19%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVCFSSPEEATKA+TEMN R+I KPLYVALAQRK+ R++ L Q R
Sbjct: 244 VDEAGKSKGFGFVCFSSPEEATKAITEMNQRMILGKPLYVALAQRKDVRRSQLEQQIQAR 303
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
MRMQ G G F+P + Q+ + P P P PQM +
Sbjct: 304 -NQMRMQNAA---ASGGIPGQFIPPMFYGQQGFFPPNGRGNAPFP--GPNPQMMM--RRG 355
Query: 121 QGFPNIPQFRSAPR-ASTGQTV-IRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAG 178
Q FP Q+ PR GQ V + G + GQ PM+
Sbjct: 356 QQFPGPEQW---PRPGPNGQPVPVYGIPPQFQDFNGQ---------PMRQ---------- 393
Query: 179 RQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQML 238
+Q GGY YP RN GG Q Q+ L + ++A A P +QK++L
Sbjct: 394 QQRGGY--YPNRNQNK------GGRQ-------------QKDL-AAIIANAPPDQQKRIL 431
Query: 239 GERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
GE L+P I + PE AGKITGM+L ++N E+L +LE +E + E+A+ + ++
Sbjct: 432 GEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLEDDELFNNHFEDALTAFEEYK 491
>gi|449440159|ref|XP_004137852.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
gi|449521207|ref|XP_004167621.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Cucumis sativus]
Length = 640
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 119/327 (36%), Positives = 168/327 (51%), Gaps = 62/327 (18%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G +KGFGFVCFS+P+EA +AV + G + KPLY+A+AQRKEDR+ L Q+ Q
Sbjct: 328 MRDDKGINKGFGFVCFSNPDEAKRAVNTLQGCMFHGKPLYLAIAQRKEDRQMQLKLQFAQ 387
Query: 60 RIANMRMQQMGQLFQPGSTGGYFV---------------PTLPQPQRFYGPTQMTQIRPQ 104
R+A + PG + F P +P + P M +
Sbjct: 388 RLAGI----------PGPSTTIFPGGYPPYYYPAPGVVPPVASRPGLMFQPLGM-----R 432
Query: 105 PRWAAAPQMRPSGQTAQ---GF-----PNIPQFRSAPRASTGQTVIRGANMSARPITGQS 156
P W RP+ T+ GF P IP PR + G+ M+ ++ Q+
Sbjct: 433 PGW------RPNTYTSPARPGFQPSPLPIIPTASRQPRQNRGK-------MNGPILSHQN 479
Query: 157 TMGPRGGGPMQAPGPAS------VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGV 210
G + MQ A+ S++ +Q G KY V N + + G AAA
Sbjct: 480 --GVQSVSYMQNSQDANQSVVTAKSSSNQQWTGQVKY-VPNARSCETNKTSGASAAAAAF 536
Query: 211 QAV-HVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAEL 269
+V V + S+MLA++ P +QKQ+LGE L+PL+Q+ P+LA KITGMLLE+DN+EL
Sbjct: 537 NSVGDVSQGSQILSSMLASSPPDQQKQILGEHLYPLVQKRKPDLAAKITGMLLEMDNSEL 596
Query: 270 LYMLEHNESLKSKVEEAVAVLQAHQAK 296
L +LE ESL +KVEEAV VL+ + K
Sbjct: 597 LLLLESPESLAAKVEEAVQVLKISKTK 623
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 43/69 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G S+GFGF+ F + ++A +A+ +NG +GSK +Y+A AQ+K +R+ L Y ++
Sbjct: 227 DENGVSRGFGFINFENSDDAKRALETLNGSQLGSKVIYIARAQKKTEREEVLRRHYEEKC 286
Query: 62 ANMRMQQMG 70
++ G
Sbjct: 287 KEQVLKYKG 295
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 24/48 (50%), Positives = 31/48 (64%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
S+DG+SKG+GFV F S E A A+ +NG +G K +YV RK DR
Sbjct: 136 SDDGKSKGYGFVQFESEESANAAIESLNGFTVGDKQIYVGKFVRKSDR 183
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 19/63 (30%), Positives = 39/63 (61%), Gaps = 1/63 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQR 60
S GRS +G+V F SP++AT A+ MN ++ + + V ++R D RK+ + + +++
Sbjct: 49 SSTGRSLSYGYVNFISPQDATNAIEVMNHSMLNGRAIRVMWSRRDADARKSGIGNVFVKN 108
Query: 61 IAN 63
+++
Sbjct: 109 LSD 111
>gi|402886672|ref|XP_003906749.1| PREDICTED: polyadenylate-binding protein 4-like [Papio anubis]
Length = 192
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 67/101 (66%), Positives = 78/101 (77%)
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A V V+GQEPLT++ LAAA PQEQKQML ERLFPLIQ M+ L KITG+L
Sbjct: 83 AIQPLQAPQPEVQVRGQEPLTASTLAAAHPQEQKQMLRERLFPLIQTMHSNLTEKITGIL 142
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEIDN+ELL+ML +SL SKV+EAVAVLQAH AK+ A +K
Sbjct: 143 LEIDNSELLHMLAFPQSLHSKVDEAVAVLQAHHAKKEAAQK 183
>gi|224085260|ref|XP_002307526.1| predicted protein [Populus trichocarpa]
gi|222856975|gb|EEE94522.1| predicted protein [Populus trichocarpa]
Length = 649
Score = 125 bits (315), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 149/307 (48%), Gaps = 39/307 (12%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ + G SKG GFV FS+PEEA++A+ MNG++IG KPLYVA+AQR+E+RKA L + + Q
Sbjct: 348 LDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQRREERKARLQAHFTQ- 406
Query: 61 IANMRMQQMGQLFQPGSTGGYF--VPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQ 118
+Q G P GY P L Q F+G + PQP Q G
Sbjct: 407 -----IQAPGLSPMPSGLPGYHPGAPRLAPQQLFFGQGTAGMMPPQPAGYGFQQQLLPGM 461
Query: 119 TAQGFPN--IPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSA 176
A PN +P + IR RGG Q +
Sbjct: 462 RAGVGPNFVMPYQMQRQGQQGQRMGIR-----------------RGGNHQQIQQQQQLLH 504
Query: 177 AGRQTGGYNKYPVRN---PGTQPQAQIGGIQP---AAAGVQAVHVQGQE----PLT--ST 224
G RN PQ +G + P A+G+ Q P++ +T
Sbjct: 505 RNTNQGLRYMGNARNGIDSSAAPQGFVGPVVPFPFEASGMPVTPSDAQRTAPVPISALTT 564
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
LA+A P+++ MLGE+L+PL++R+ P+ K+TGMLLE+D E+L+++E ++LK KV
Sbjct: 565 ALASATPEKRMVMLGEQLYPLVERLEPDQVAKVTGMLLEMDQTEVLHLIESPDALKKKVA 624
Query: 285 EAVAVLQ 291
EA+ VLQ
Sbjct: 625 EAMQVLQ 631
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G+SKGFGFV F SP+ A AV ++NG K YV AQRK +R+A L +++ Q
Sbjct: 246 DQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQE- 304
Query: 62 ANMRMQQM 69
N R +++
Sbjct: 305 RNSRYEKL 312
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+ +G+SKG+GFV F + E A A+ +NG +I K ++V R ++R
Sbjct: 154 VDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER 202
>gi|119596295|gb|EAW75889.1| hCG2019100, isoform CRA_c [Homo sapiens]
Length = 433
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 62/91 (68%), Positives = 72/91 (79%), Gaps = 6/91 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQ 88
++ MR +G QP S YF+P +PQ
Sbjct: 386 LSTMRTLSNPLLGSFQQPSS---YFLPAMPQ 413
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 228 GHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 42.4 bits (98), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ ++
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
>gi|224085256|ref|XP_002307525.1| predicted protein [Populus trichocarpa]
gi|222856974|gb|EEE94521.1| predicted protein [Populus trichocarpa]
Length = 614
Score = 125 bits (313), Expect = 3e-26, Method: Compositional matrix adjust.
Identities = 98/295 (33%), Positives = 143/295 (48%), Gaps = 39/295 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ + G SKG GFV FS+PEEA++A+ MNG++IG KPLYVA+AQR+E+RKA L + + Q
Sbjct: 338 LDQQGLSKGSGFVAFSTPEEASRALNGMNGKMIGKKPLYVAVAQRREERKARLQAHFTQ- 396
Query: 61 IANMRMQQMGQLFQPGSTGGYF--VPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQ 118
+Q G P GY P L Q F+G + PQP Q G
Sbjct: 397 -----IQAPGLSPMPSGLPGYHPGAPRLAPQQLFFGQGTAGMMPPQPAGYGFQQQLLPGM 451
Query: 119 TAQGFPN--IPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSA 176
A PN +P + IR RGG Q V
Sbjct: 452 RAGVGPNFVMPYQMQRQGQQGQRMGIR-----------------RGGNHQQIQQQQQVH- 493
Query: 177 AGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQ 236
+ + ++P P + A + A+ +T LA+A P+++
Sbjct: 494 --YRLNVFQRFPPLTASGMPVTPSDAQRTAPVPISAL---------TTALASATPEKRMV 542
Query: 237 MLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
MLGE+L+PL++R+ P+ K+TGMLLE+D E+L+++E ++LK KV EA+ VLQ
Sbjct: 543 MLGEQLYPLVERLEPDHVAKVTGMLLEMDQTEVLHLIESPDALKKKVAEAMQVLQ 597
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G+SKGFGFV F SP+ A AV ++NG K YV AQRK +R+A L +++ Q
Sbjct: 236 DQSGKSKGFGFVNFQSPDSAAAAVEKLNGTTFNDKVWYVGRAQRKGEREAELKARFEQE- 294
Query: 62 ANMRMQQM 69
N R +++
Sbjct: 295 RNSRYEKL 302
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+ +G+SKG+GFV F + E A A+ +NG +I K ++V R ++R
Sbjct: 144 VDNNGQSKGYGFVQFENEEAAQSAINRLNGMLINDKEVFVGRFVRHQER 192
>gi|1737492|gb|AAB38974.1| poly(A)-binding protein [Triticum aestivum]
Length = 651
Score = 124 bits (312), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 109/311 (35%), Positives = 148/311 (47%), Gaps = 48/311 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G S+G GFV F S ++A++A+ EMN +++G+KPLYVALAQRKEDRKA L +Q+ Q
Sbjct: 348 DSNGASRGSGFVAFKSADDASRALAEMNNKMVGNKPLYVALAQRKEDRKARLQAQFSQMR 407
Query: 62 ANMRMQQMG---QLFQPGSTGGYFVPTLPQPQRFYG-PTQMTQIRPQPRWA----AAPQM 113
Q +G Q+ PG G Q FYG P I PQP + P M
Sbjct: 408 PVPMAQTVGPRMQMLPPGVPVGQ--------QMFYGQPPAF--INPQPGFGFQQPFMPGM 457
Query: 114 RPSGQTAQGF----------PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGG 163
RP G F P P R A Q++ G G+ G
Sbjct: 458 RPGGAPMPNFMMPMVQQGQQPQRPAGRRAGAGGMQQSMQMGQQQMLGRGGGRGYRYQTGR 517
Query: 164 GPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTS 223
G P PA G T Y G P G QP G A
Sbjct: 518 G---MPDPAMHGVGGVMTSPYEM------GGMPMRDAGESQPVPIGALA----------- 557
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
+ LA + P+ Q+ MLGE L+PL+ ++ + A K+TGMLLE+D E+L++LE ++LK+KV
Sbjct: 558 SALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKV 617
Query: 284 EEAVAVLQAHQ 294
EA+ VL++ Q
Sbjct: 618 AEAMEVLRSAQ 628
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DGRSK FGFV F SP+EA AV ++NG+ K YV AQ+K +R+ L ++ + +
Sbjct: 247 DGRSKCFGFVNFESPDEAALAVQDLNGKKFSDKEWYVGRAQKKSEREIELKEKFEKNL 304
Score = 40.4 bits (93), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
G SKG+GFV + E A A+ ++NG ++ K +YV RK++R
Sbjct: 157 GESKGYGFVQYERDEAAHAAIEKLNGMLMNDKKVYVGPFVRKQERD 202
>gi|168053933|ref|XP_001779388.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162669186|gb|EDQ55778.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 650
Score = 124 bits (311), Expect = 5e-26, Method: Compositional matrix adjust.
Identities = 115/317 (36%), Positives = 163/317 (51%), Gaps = 41/317 (12%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+S+G GFV FSSPEEAT+AVTEMNG+++GSKPLYVALAQRKE+R+A L + + Q ++
Sbjct: 347 GQSRGSGFVAFSSPEEATRAVTEMNGKMVGSKPLYVALAQRKEERRARLQAAFAQMRTSV 406
Query: 65 R--MQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQP-RWAAAPQ-MRPSGQTA 120
+ ++ PG P +P +YG I QP + PQ +RP G A
Sbjct: 407 SPAVPTSLPMYHPGPG---MSPQMP----YYGQHPSGPIPLQPAAFGYQPQIIRPGG--A 457
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARP----ITGQSTMGPRGGGPMQAPGPASVSA 176
Q FPN + + P Q G P Q M RGG +
Sbjct: 458 Q-FPNYIGYANVPLRQGQQGQRAGGRRGGAPQQQQQQLQQQMIQRGG-----------NR 505
Query: 177 AGRQTGGYNKYPVRNPGTQPQAQIGGIQPA---AAGVQAVHVQG---QEPL---TSTMLA 227
R T P + PQ +G + P G+ +V Q+PL
Sbjct: 506 NLRYTPNARNMP--DTAVPPQGIMGAMVPVPLEIGGLPVANVDSGVPQQPLPISALASAL 563
Query: 228 AAQPQEQKQ-MLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
A+ P EQ++ MLGE+L+PL+ ++ + AGK+TGMLLE+D E+L+++E E+L++KV EA
Sbjct: 564 ASAPPEQQRAMLGEQLYPLVDQLEHDYAGKVTGMLLEMDQTEVLHLIESPEALRAKVAEA 623
Query: 287 VAVLQAHQAKQAAVKKE 303
+ VL+ QA A E
Sbjct: 624 MDVLRMAQAAPVAPTDE 640
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 36/58 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
DG+SK FGFV F P+ A KAV +NG+ K YV AQ+K +R+A L +++ Q
Sbjct: 241 DSDGKSKCFGFVNFEHPDNAAKAVEALNGKKRDEKEWYVGRAQKKSEREAELRAKFEQ 298
Score = 40.4 bits (93), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKG+GFV F E A A+ ++NG ++ K ++V R+++R S + + N+
Sbjct: 153 GQSKGYGFVQFEQEESALTAIEKVNGMLLNDKQVFVGPFVRRQERD---QSGGVSKFNNV 209
Query: 65 RMQQMGQ 71
++ +G+
Sbjct: 210 YVKNLGE 216
>gi|448262675|pdb|4IVE|A Chain A, Crystal Structure Of A Polyadenylate-binding Protein 3
(pabpc3) From Homo Sapiens At 2.30 A Resolution
gi|448262676|pdb|4IVE|B Chain B, Crystal Structure Of A Polyadenylate-binding Protein 3
(pabpc3) From Homo Sapiens At 2.30 A Resolution
gi|448262677|pdb|4IVE|C Chain C, Crystal Structure Of A Polyadenylate-binding Protein 3
(pabpc3) From Homo Sapiens At 2.30 A Resolution
gi|448262678|pdb|4IVE|D Chain D, Crystal Structure Of A Polyadenylate-binding Protein 3
(pabpc3) From Homo Sapiens At 2.30 A Resolution
Length = 98
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 64/86 (74%), Positives = 73/86 (84%)
Query: 216 QGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEH 275
QGQE LT++ LA+A PQ+QKQ LGERLFPLIQ +P LAGKITG LLEIDN+ELLY LE
Sbjct: 2 QGQETLTASRLASAPPQKQKQXLGERLFPLIQAXHPTLAGKITGXLLEIDNSELLYXLES 61
Query: 276 NESLKSKVEEAVAVLQAHQAKQAAVK 301
ESL+SKV+EAVAVLQAHQAK+A K
Sbjct: 62 PESLRSKVDEAVAVLQAHQAKEATQK 87
>gi|284055433|pdb|2X04|A Chain A, Crystal Structure Of The Pabc-Tnrc6c Complex
gi|284055434|pdb|2X04|B Chain B, Crystal Structure Of The Pabc-Tnrc6c Complex
Length = 80
Score = 124 bits (310), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 62/75 (82%), Positives = 70/75 (93%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+
Sbjct: 6 LTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLR 65
Query: 281 SKVEEAVAVLQAHQA 295
SKV+EAVAVLQAHQA
Sbjct: 66 SKVDEAVAVLQAHQA 80
>gi|379072634|gb|AFC92949.1| poly(A) binding protein, cytoplasmic 1, partial [Hymenochirus
curtipes]
Length = 207
Score = 124 bits (310), Expect = 7e-26, Method: Compositional matrix adjust.
Identities = 101/226 (44%), Positives = 126/226 (55%), Gaps = 37/226 (16%)
Query: 57 YMQRIANMRMQQ-MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQ 112
YMQR+A++R+ + +QP + YF+ +P Q +Y P Q+TQ+RP PRW A
Sbjct: 1 YMQRMASVRVPNPVINPYQPPPSS-YFMAAIPPAQNRAAYYPPGQITQLRPSPRWTA--- 56
Query: 113 MRPSGQTAQGFP--NIP-QFR-SAPRASTGQTVIRGANMSARPITGQ-------STMGPR 161
Q+A+ P N+P R +APR T+ +N R ++ Q TMGPR
Sbjct: 57 -----QSARPHPFQNMPGTIRPTAPRPPAFSTMRPASNQVPRVVSAQRVANTSTQTMGPR 111
Query: 162 GGGPMQAPGPASVSAAGRQTGGYNKYP-VRNP--GTQPQAQIGGIQPAAAGVQAVHVQGQ 218
A SV R Y P VRNP Q Q+ QPA VHVQGQ
Sbjct: 112 PTAAAAAAATNSV----RTVPQYKYAPGVRNPQQHLNAQPQVAMQQPA------VHVQGQ 161
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEI 264
EPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEI
Sbjct: 162 EPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEI 207
>gi|297832034|ref|XP_002883899.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
gi|297329739|gb|EFH60158.1| hypothetical protein ARALYDRAFT_899764 [Arabidopsis lyrata subsp.
lyrata]
Length = 655
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/298 (37%), Positives = 154/298 (51%), Gaps = 30/298 (10%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G S+G GFV FS+PEEATKA++EM+G++I +KPLYVA+AQRKEDR+A L +Q+ Q
Sbjct: 358 NGMSRGSGFVAFSTPEEATKAMSEMSGKMIENKPLYVAVAQRKEDRRARLQAQFSQ---- 413
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQMRPSGQT 119
MR M P FYG T I QP + P MRP G
Sbjct: 414 MRPVAMPPPVGPRMPIYPPGGPGIGQPMFYGQAPPTMISSQPGFGYQQQLVPGMRPGGAP 473
Query: 120 AQGF--PNIPQFRSAPRAST-GQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSA 176
F P + Q + P G + Q M PR G + P
Sbjct: 474 MHNFFMPMVQQGQQRPGGRHPGGIQQSQQQQQVPMMQQQHQMHPR-GRMFRYP------- 525
Query: 177 AGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPL--TSTMLAAAQPQEQ 234
GR +GG P PG P ++G P V + HV P+ ++ LA A P+ Q
Sbjct: 526 QGRGSGG----PPDVPGMLPY-EMGSNMPLRDPVLSQHV----PIGALASSLANAAPELQ 576
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
+ +LGE L+PL++++ E A K+TGMLLE+D E+L++LE E+LK+KV EA+ VL++
Sbjct: 577 RTLLGENLYPLVEQLEAESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRS 634
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+ KGFGFV F + ++A KAV +NG+ K +V AQ+K +R+ L QY Q +
Sbjct: 255 EGKPKGFGFVNFENADDAAKAVESLNGKTFDDKEWFVGRAQKKSEREMELKVQYEQSL 312
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLAS 55
+ G+SKG+GFV + + E A KA+ ++NG ++ K +YV R+++R K +
Sbjct: 161 VDSSGQSKGYGFVQYETEESAQKAMGQLNGMLLNDKQVYVGPFLRRQERDSTGNKTIFTN 220
Query: 56 QYMQRIA 62
Y++ +A
Sbjct: 221 VYVKNLA 227
Score = 38.5 bits (88), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 16/41 (39%), Positives = 27/41 (65%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
RS G+G+V F+SP++A +A+ E+N + KP+ V + R
Sbjct: 79 RSLGYGYVNFTSPQDAARAIQELNYIPLNGKPVRVMYSHRD 119
>gi|222629159|gb|EEE61291.1| hypothetical protein OsJ_15377 [Oryza sativa Japonica Group]
Length = 613
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 110/299 (36%), Positives = 147/299 (49%), Gaps = 64/299 (21%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G SKG GFV FS+ EEA++A+TEMNG++I KPLYVA AQRKEDRKA L + +
Sbjct: 356 NGVSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQPGFGFQ--- 412
Query: 64 MRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
QQ+ +PG YFVP + Q Q+ GP RP R R +AQ
Sbjct: 413 ---QQLVPGMRPGGAHMPNYFVPVVQQGQQ--GP------RPGIR-------RSGAGSAQ 454
Query: 122 GFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQT 181
G + + + Q + RG P + P PG A
Sbjct: 455 G-------QQSAQPFQQQMLPRGRVYRYPPAHNMPDVPP-------MPGVAGGMIQSYDM 500
Query: 182 GGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGER 241
GG +PVR+ G P A IG + A LA A P++Q+ +LGE
Sbjct: 501 GG---FPVRDAGLSP-APIGTLTSA-------------------LANANPEQQRTILGES 537
Query: 242 LFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL----QAHQAK 296
L+PL++ + A K+TGMLLE+D E+L++LE E+LKSKV EA+ VL Q H A
Sbjct: 538 LYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVLRNVAQQHNAN 596
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
DG+S+ FGF+ F SP++A +AV E+NG+ I K YV AQ+K +R+ L ++ Q + +
Sbjct: 253 DGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKD 312
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
E G+SKGFGFV + E A A+ +NG +I KP+YV RK++R+
Sbjct: 160 DEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERE 208
>gi|288563106|pdb|3KUR|A Chain A, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
gi|288563107|pdb|3KUR|B Chain B, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
gi|288563108|pdb|3KUR|C Chain C, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
gi|288563109|pdb|3KUR|D Chain D, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
gi|288563110|pdb|3KUR|E Chain E, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
gi|288563111|pdb|3KUR|F Chain F, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
gi|288563112|pdb|3KUR|G Chain G, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
gi|288563113|pdb|3KUR|H Chain H, Crystal Structure Of The Mlle Domain Of Poly(A)-Binding
Protein
Length = 79
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
PLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL
Sbjct: 6 PLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESL 65
Query: 280 KSKVEEAVAVLQAH 293
+SKV+EAVAVLQAH
Sbjct: 66 RSKVDEAVAVLQAH 79
>gi|109097400|ref|XP_001103236.1| PREDICTED: polyadenylate-binding protein 4-like [Macaca mulatta]
Length = 182
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 65/101 (64%), Positives = 78/101 (77%)
Query: 202 GIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
IQP A V V+GQEPLT++ LAAA PQEQK+ML ERLFPLIQ M+ L G ITG+L
Sbjct: 73 AIQPLQAPQPEVQVRGQEPLTASTLAAAHPQEQKRMLRERLFPLIQTMHSNLTGNITGIL 132
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 302
LEID++ELL+ML +SL SKV+EAVAVLQAH AK+ A +K
Sbjct: 133 LEIDSSELLHMLAFPQSLHSKVDEAVAVLQAHHAKKEAAQK 173
>gi|398327|emb|CAA81127.1| poly(A)-mRNA binding protein [Anemia phyllitidis]
Length = 638
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 109/300 (36%), Positives = 159/300 (53%), Gaps = 38/300 (12%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ----- 59
G+S G GFV FS+PEEA +AV +MNG+++GSKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 344 GQSMGSGFVTFSAPEEAMQAVNDMNGKMVGSKPLYVALAQRKEERRARLQAQFAQMQIVA 403
Query: 60 RIANMRMQQMGQLFQPGSTG-GYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQ 118
A ++ PG G G+ Q FYG QP AP + PS
Sbjct: 404 PNAPPMAPNPPSMYHPGPQGMGH--------QMFYG---------QP----APGLLPSQA 442
Query: 119 TAQGF--PNIPQFR--SAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G+ P +P R SA + V R RP+ + +GP P P
Sbjct: 443 NGFGYQQPMVPTMRPTSAGVPNYFMPVQRPGQQIQRPVNRRGGVGPL-QPQHHQPPPQQF 501
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
G ++ Y+++ T P + + G A A ++ G P ++ LA+A P+EQ
Sbjct: 502 PRGGNRSMRYSQF----SRTMPDSTMQGFGMMGAA-NASNI-GLMPALASALASASPEEQ 555
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
+ MLGE+L+PL+ R+ + AGK+TGMLLE+D E+L++++ LK+KV EA+ VL+ Q
Sbjct: 556 RVMLGEQLYPLVDRLEHDHAGKVTGMLLEMDQPEVLHLIDLLRQLKAKVAEAMDVLRMAQ 615
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
DG+SK FGFV F + ++A AV +NG++I K YV AQ+K +R+A L +++ Q
Sbjct: 240 DGKSKCFGFVNFENVDDAANAVENLNGKLINEKEWYVGRAQKKSEREAELKAKFEQ 295
Score = 41.6 bits (96), Expect = 0.48, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
M + G SKG+GFV F E A A+ ++NG +I + + VA RK++R
Sbjct: 147 MDDAGNSKGYGFVQFEKEESAQIAIEKVNGMLINDRQVSVAPFIRKQERD 196
>gi|344228406|gb|EGV60292.1| hypothetical protein CANTEDRAFT_136776 [Candida tenuis ATCC 10573]
Length = 647
Score = 123 bits (308), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 111/306 (36%), Positives = 149/306 (48%), Gaps = 46/306 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVCFSSPEEATKA+TEMN R++ KPLYVALAQRK+ R++ L Q R
Sbjct: 368 VDEQGKSKGFGFVCFSSPEEATKAITEMNQRMVEGKPLYVALAQRKDVRRSQLEQQIQAR 427
Query: 61 IANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQ 118
MRMQ G F+ + FYG Q P P A RP+G
Sbjct: 428 -NQMRMQNAAAAAAAAGGAIPGQFMNPM-----FYG--QQPGFFPPP---GANGGRPNGA 476
Query: 119 TAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAG 178
G PN G N + + + + RGG Q P P + + G
Sbjct: 477 NGAG-PNA-----------------GPNANPQMMMAAAAAAARGG---QIPPPQAGAGWG 515
Query: 179 R-QTGGYNKYPVRNPGTQPQAQIG-GIQPAAAGVQAVHVQGQEPLTSTMLAA----AQPQ 232
R G PV G P Q G QP A ++ P + LAA P+
Sbjct: 516 RPNPNGQQIPPVY--GMPPVYQNGPNGQPRGAPAPGMYPPNGRPTKARDLAAILSSVPPE 573
Query: 233 EQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
+QK++LGE L+P I + PE AGKITGM+L++DN E+L +LE +E + E+A+
Sbjct: 574 QQKRILGEELYPKIVSTGRANEPEAAGKITGMMLDLDNQEILSLLEDDELFNNHFEDALT 633
Query: 289 VLQAHQ 294
+ ++
Sbjct: 634 AYEEYK 639
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 36/54 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+SKGFGFV F + +A KAV E+N + I +P+YV AQ+K +R L QY
Sbjct: 268 EGKSKGFGFVNFDNHNDAVKAVDELNNKEIAGQPIYVGRAQKKRERMEELRRQY 321
>gi|148674413|gb|EDL06360.1| mCG5434 [Mus musculus]
Length = 534
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 66/124 (53%), Positives = 81/124 (65%), Gaps = 9/124 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QY +R
Sbjct: 326 MTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPSG 117
++ + QP S Y +P +PQ +Y +T ++P PRW A P PS
Sbjct: 386 PSH---PVLSSFQQPTS---YLLPAVPQSTAQAVYYSSGSITPMQPDPRWTAQPHGPPSA 439
Query: 118 QTAQ 121
Q
Sbjct: 440 SVVQ 443
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+S+GFGFV F EEA KAV MNG+ + + LYV AQ++ +R++ L ++ Q
Sbjct: 227 NGQSRGFGFVNFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQSELKRRFEQ 282
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/75 (32%), Positives = 44/75 (58%), Gaps = 8/75 (10%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ-------YMQ 59
S+GFGFV F + E A KA+ MNG ++ + ++V + ++ R+A L ++ Y++
Sbjct: 137 SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGARALGFTNIYVK 196
Query: 60 RI-ANMRMQQMGQLF 73
+ AN+ Q++ LF
Sbjct: 197 NLHANVDEQRLQDLF 211
>gi|146415246|ref|XP_001483593.1| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 122 bits (307), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 152/312 (48%), Gaps = 68/312 (21%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G+SKGFGFVCFSSPEEATKA+TEMN R+I KPLYVALAQRK+ R++ L Q
Sbjct: 374 MVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQA 433
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT 119
R MRMQ G G + +P FYG QP + P+G+
Sbjct: 434 R-NQMRMQNAAA--AAGMPGQFMLPM------FYGQ--------QPGF-----FPPNGRG 471
Query: 120 -AQG-FPNIPQFRSAPRAST-----GQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPA 172
AQG FP PQ PR GQ G N P+ G M P GG P
Sbjct: 472 GAQGPFPPNPQM-MMPRGGQMPPPQGQWPRAGPNGQPVPVYG---MPPVYGGEFNGP--- 524
Query: 173 SVSAAGRQTGGYNKYPVRN-PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQP 231
+ +Q G Y P RN G +PQ + I ++
Sbjct: 525 --NGQRQQRGAYP--PNRNQKGGRPQRDLAAI----------------------ISTVPV 558
Query: 232 QEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
+QK++LGE L+P I + PE AGKITGM+L+++N E+L +LE +E ++ E+A+
Sbjct: 559 DQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILALLEDDELFENHFEDAL 618
Query: 288 AVLQAHQAKQAA 299
+ ++ + A
Sbjct: 619 TAFEEYKKGEQA 630
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 34/56 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV F + E A AV EMN + I + LYV AQ+K +R L Y
Sbjct: 273 DQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLY 328
>gi|55417872|gb|AAV50098.1| polyadenylate binding protein [Caenorhabditis remanei]
Length = 179
Score = 122 bits (307), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 72/96 (75%), Gaps = 4/96 (4%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF PEEAT AVTEMN +++ SKPLYVALAQRKEDR+A LASQYMQR+
Sbjct: 63 DENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRL 122
Query: 62 ANMRMQQM---GQLFQPGSTG-GYFVPTLPQPQRFY 93
A+MRM G ++ P TG GY+V Q QR +
Sbjct: 123 ASMRMHSNVPGGGMYNPAQTGPGYYVANPMQQQRNF 158
>gi|156086682|ref|XP_001610750.1| polyadenylate binding protein [Babesia bovis T2Bo]
gi|154798003|gb|EDO07182.1| polyadenylate binding protein, putative [Babesia bovis]
Length = 585
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 108/304 (35%), Positives = 145/304 (47%), Gaps = 86/304 (28%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G S+GFGFVCFS P+EATKAV M+ +++ +KPLYV LA+++E R AS+ QR
Sbjct: 351 DHNGVSRGFGFVCFSRPDEATKAVAGMHLKLVKNKPLYVGLAEKREQR----ASRMQQRN 406
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
M Q G +PG +VP P P+M P G
Sbjct: 407 RQNDMMQYGD--RPG-----YVPLYP-----------------------PEMVPQGYFNH 436
Query: 122 --GF-PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRG---GGPM---QAPGPA 172
GF P +P A+P+ +GPRG PM G A
Sbjct: 437 QVGFRPTVP---------------------AQPMG----VGPRGMRMVAPMPMMHGRGTA 471
Query: 173 SVSAA--GRQTGGYNKYPVRN---PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
S AA GR+T PV+ G + AQ G A V Q P+ +
Sbjct: 472 SPHAAAQGRRT------PVKQVPLSGFKFTAQARNRTELPNGAPAAAVPTQRPIDGAAM- 524
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
KQM+GERLFP++ R PELAGKITGM+LE+DN EL+ +LE+ + LK K++EA+
Sbjct: 525 ------HKQMIGERLFPIVARENPELAGKITGMMLEMDNQELMALLENEQQLKDKIQEAM 578
Query: 288 AVLQ 291
VL+
Sbjct: 579 RVLK 582
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 34/53 (64%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G SKG+GFV +++ E A +A+ ++NG +IG+ + VA R+ +R + + +
Sbjct: 161 GNSKGYGFVHYTTEESAKEAIEKVNGMLIGNSQVSVAPFLRRNERTSTVGDVF 213
>gi|260812333|ref|XP_002600875.1| hypothetical protein BRAFLDRAFT_75840 [Branchiostoma floridae]
gi|229286165|gb|EEN56887.1| hypothetical protein BRAFLDRAFT_75840 [Branchiostoma floridae]
Length = 527
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 68/91 (74%), Positives = 83/91 (91%)
Query: 211 QAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELL 270
QAV++QG+EPLT++MLAAA PQEQKQMLGERLFPLIQ +P+LAGKITGMLLE++N ELL
Sbjct: 432 QAVYIQGEEPLTASMLAAAPPQEQKQMLGERLFPLIQNSHPDLAGKITGMLLELENPELL 491
Query: 271 YMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
+MLE E+LK+KVEEAVAVLQAH+AK+ A +
Sbjct: 492 HMLESREALKAKVEEAVAVLQAHEAKERAAR 522
>gi|268566587|ref|XP_002639761.1| C. briggsae CBR-PAB-1 protein [Caenorhabditis briggsae]
Length = 651
Score = 122 bits (306), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 66/111 (59%), Positives = 78/111 (70%), Gaps = 7/111 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF PEEAT AV+EMN +++ SKPLYVALAQRKEDR+A LASQYMQR+
Sbjct: 351 DENGRSKGFGFVCFEKPEEATTAVSEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRL 410
Query: 62 ANMRMQQM---GQLFQPGSTG-GYFVPTLPQPQR-FYGPTQMTQIRPQPRW 107
A+MRM G ++ P G GY+V Q QR F G Q+ RP RW
Sbjct: 411 ASMRMHTNVPGGGMYSPAQPGPGYYVANPMQQQRNFVGGPQLA--RPGGRW 459
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 22/82 (26%), Positives = 43/82 (52%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E+G SKG+GFV F + E A A+ ++NG ++ K ++V Q + R L + ++
Sbjct: 153 IDEEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELG-ETAKK 211
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ + + F
Sbjct: 212 FTNVYVKNFGEHYNKDTLEKLF 233
>gi|169771151|ref|XP_001820045.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|317144326|ref|XP_003189588.1| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
oryzae RIB40]
gi|121923334|sp|Q2UK72.1|PABP_ASPOR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|83767904|dbj|BAE58043.1| unnamed protein product [Aspergillus oryzae RIB40]
gi|391872693|gb|EIT81794.1| polyadenylate-binding protein [Aspergillus oryzae 3.042]
Length = 765
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 158/322 (49%), Gaps = 50/322 (15%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR--IA 62
G+SKGFGFVCFSSP+EA+KAVTEMN R++ KPLYVALAQRK+ R++ L + R I
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIR 489
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIR---------PQP--RWAAAP 111
+ + QP Y QP FYGP Q I PQP A P
Sbjct: 490 QQQAAAAAGMPQP-----YM-----QPAVFYGPGQQGFIPGQRGGIAFPPQPGMVMAGIP 539
Query: 112 QMRPSGQTAQGFPNI-------------PQFRSAPRASTGQTVIRGANMSARPITGQSTM 158
RP GQ FP P F+ P + V G M Q
Sbjct: 540 GGRP-GQYPGPFPGQQGGRGMGPNQQLPPNFQGIPMGAMQGPVPNG--MGYPQGMAQVQF 596
Query: 159 GPRGGGPMQAPGPASVSAAGRQTGGYNK---YPVR----NPGTQPQAQIGGIQPAAAGVQ 211
G GG Q PG ++ R G PV+ PG + Q PA +
Sbjct: 597 GRGAGGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEE 656
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
AV LT+ L+AA P +QKQMLGE L+P IQ PELAGKITGMLLE++N ELL
Sbjct: 657 AV----AGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLS 712
Query: 272 MLEHNESLKSKVEEAVAVLQAH 293
+LE E+L++KV+EA+ V +
Sbjct: 713 LLEDEEALRAKVDEALNVYDEY 734
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV FS+ E A AV EMN + I ++ LYV AQ+K +R+ L QY
Sbjct: 264 DQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQY 319
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 171 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 230
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I ++ ++ +LF+
Sbjct: 231 NVYIKNIDQDVTEEEFRELFE 251
>gi|344236473|gb|EGV92576.1| Polyadenylate-binding protein 4 [Cricetulus griseus]
Length = 91
Score = 122 bits (305), Expect = 2e-25, Method: Compositional matrix adjust.
Identities = 62/78 (79%), Positives = 69/78 (88%)
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+
Sbjct: 1 MLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVD 60
Query: 285 EAVAVLQAHQAKQAAVKK 302
EAVAVLQAH AK+ A +K
Sbjct: 61 EAVAVLQAHHAKKEAAQK 78
>gi|308499747|ref|XP_003112059.1| CRE-PAB-1 protein [Caenorhabditis remanei]
gi|308268540|gb|EFP12493.1| CRE-PAB-1 protein [Caenorhabditis remanei]
Length = 695
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 61/96 (63%), Positives = 72/96 (75%), Gaps = 4/96 (4%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF PEEAT AVTEMN +++ SKPLYVALAQRKEDR+A LASQYMQR+
Sbjct: 392 DENGRSKGFGFVCFEKPEEATTAVTEMNSKMVCSKPLYVALAQRKEDRRAQLASQYMQRL 451
Query: 62 ANMRMQQM---GQLFQPGSTG-GYFVPTLPQPQRFY 93
A+MRM G ++ P TG GY+V Q QR +
Sbjct: 452 ASMRMHSNVPGGGMYNPAQTGPGYYVANPMQQQRNF 487
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 32/70 (45%), Positives = 43/70 (61%), Gaps = 3/70 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRII-GSK-PLYVALAQRKEDRKAHLASQYM 58
M+ DG+SKGFGFV F+ PEEA AV +N + GS L+V AQ+K +R A L ++
Sbjct: 272 MTSDGKSKGFGFVAFAQPEEAEAAVQALNDSAVDGSDLKLHVCRAQKKSERHAELKKKHE 331
Query: 59 QRIANMRMQQ 68
Q RMQ+
Sbjct: 332 QHKVE-RMQK 340
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 20/74 (27%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++G SKG+GFV F + E A A+ ++NG ++ K ++V Q + R L + ++
Sbjct: 180 IDDEGSSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELG-ETAKK 238
Query: 61 IANMRMQQMGQLFQ 74
N+ ++ G +
Sbjct: 239 FTNVYVKNFGDHYN 252
>gi|356564176|ref|XP_003550332.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 654
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 113/313 (36%), Positives = 158/313 (50%), Gaps = 62/313 (19%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G S+G GFV FS+PEEAT+A+ EMNG++ KPLYVALAQRKE+R+A L +Q+ Q M
Sbjct: 354 GISRGSGFVAFSTPEEATRALGEMNGKMFAGKPLYVALAQRKEERRARLQAQFSQ----M 409
Query: 65 RMQQMG-------QLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQM 113
R + L+ PG+ P L Q Q YG + PQ + P M
Sbjct: 410 RPVAITPSVAPRMPLYPPGA------PGLGQ-QFLYGQGPPAMMPPQAGFGYQQQLVPGM 462
Query: 114 RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
RP G +P F P GQ GQ +G RG GP+Q P
Sbjct: 463 RPGGGP------MPSF-FVPMVQQGQ-------------QGQRPVGRRGTGPVQQPQQPM 502
Query: 174 VSAAGRQT--GGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAV-HVQGQEPL--------- 221
+ G +YP PG Q +Q AA G+ +V + G P+
Sbjct: 503 PMMQQQMLPRGRVYRYP---PGR--NMQDVPLQVAAGGMLSVPYDMGGLPMRDAVGQPMP 557
Query: 222 ---TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
+T LA A P++Q+ MLGE L+PL+ ++ + A K+TGMLLE+D E+L+++E ++
Sbjct: 558 IQALATALANAPPEQQRTMLGEALYPLVDQLEHDSAAKVTGMLLEMDQPEVLHLIESPDA 617
Query: 279 LKSKVEEAVAVLQ 291
LK+KV EA+ VL+
Sbjct: 618 LKAKVAEAMDVLR 630
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+S+ FGFV F +P++A KAV +NG+ K YV AQ+K +R+ L ++ Q I
Sbjct: 250 DGKSRCFGFVNFENPDDAAKAVEGLNGKKFDDKEWYVGKAQKKSEREQELKGRFEQSI 307
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 33/57 (57%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
G SKG+GFV F + E A A+ ++NG +I K +YV RK+DR+ L+ +
Sbjct: 160 GLSKGYGFVQFDNEEAAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNV 216
>gi|328871935|gb|EGG20305.1| RNA-binding region RNP-1 domain-containing protein [Dictyostelium
fasciculatum]
Length = 567
Score = 122 bits (305), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 109/299 (36%), Positives = 147/299 (49%), Gaps = 64/299 (21%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
SKGFGFVC+++P+EA+KAV EM+GR++G+KPLYVA AQRKE R+ HL +Q+ + N R+
Sbjct: 322 SKGFGFVCYTTPDEASKAVAEMHGRMVGNKPLYVAFAQRKEIRRQHLEAQHNKFKGN-RI 380
Query: 67 QQMGQLFQPGSTGGYFVPTLPQPQRFYG---PTQMTQIRPQPR--WAAAPQMRPSGQTAQ 121
Q + ++ G FY P Q+ P+PR W Q P G Q
Sbjct: 381 QPVPSMYAGGPM-------------FYNQGMPVVYPQMMPRPRPGWN---QPVPQG---Q 421
Query: 122 GFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQT 181
G+P P + PI Q GP GG P GP
Sbjct: 422 GYPMQPNY---------------------PIRNQR--GP-GGAPNHPRGPG--------- 448
Query: 182 GGYNKYPV--RNPGTQ-PQAQIGGIQPAAAGVQ-AVHVQGQEPLTSTMLAAAQPQEQKQ- 236
G N+ P +P Q PQA PA A Q AV V ++P + A P+EQ+
Sbjct: 449 GAPNQRPRGPMDPNQQVPQAANPQPTPAPATAQEAVAVPSEQPQITLEYVEALPREQQNP 508
Query: 237 MLGERLFPLIQRMYPELAGKITGMLLE-IDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
LGE L+PLI P+ AGKITGMLL+ + EL + + + L K++EA+ VL Q
Sbjct: 509 FLGELLYPLIHASQPDAAGKITGMLLDSLTVQELFELAQRADKLGEKIKEALEVLSVSQ 567
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E +SKGFGF F +P+EA V NG++ K +YV AQ+K +R+A L ++
Sbjct: 220 DEKSKSKGFGFANFETPDEAKNCVEAENGKLFHGKVIYVGRAQKKMEREAELKHKF 275
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
E SKGFGFV + S + A KA+ ++NG II + ++V + ++R
Sbjct: 130 DETNVSKGFGFVHYESQDSADKAIMKVNGMIINDQKVFVGPFKSSKER 177
>gi|223590120|sp|A5DM21.2|PABP_PICGU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|190347872|gb|EDK40224.2| hypothetical protein PGUG_04322 [Meyerozyma guilliermondii ATCC
6260]
Length = 631
Score = 121 bits (304), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 151/312 (48%), Gaps = 68/312 (21%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G+SKGFGFVCFSSPEEATKA+TEMN R+I KPLYVALAQRK+ R++ L Q
Sbjct: 374 MVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQA 433
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT 119
R MRMQ G G + P FYG QP + P+G+
Sbjct: 434 R-NQMRMQNAAA--AAGMPGQFMSPM------FYGQ--------QPGF-----FPPNGRG 471
Query: 120 -AQG-FPNIPQFRSAPRAST-----GQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPA 172
AQG FP PQ PR GQ G N P+ G M P GG P
Sbjct: 472 GAQGPFPPNPQM-MMPRGGQMPPPQGQWPRAGPNGQPVPVYG---MPPVYGGEFNGP--- 524
Query: 173 SVSAAGRQTGGYNKYPVRN-PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQP 231
+ +Q G Y P RN G +PQ + I ++
Sbjct: 525 --NGQRQQRGAYP--PNRNQKGGRPQRDLAAI----------------------ISTVPV 558
Query: 232 QEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
+QK++LGE L+P I + PE AGKITGM+L+++N E+L +LE +E ++ E+A+
Sbjct: 559 DQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILALLEDDELFENHFEDAL 618
Query: 288 AVLQAHQAKQAA 299
+ ++ + A
Sbjct: 619 TAFEEYKKGEQA 630
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
++G+S+GFGFV F + E A AV EMN + I + LYV AQ+K +R L Y R
Sbjct: 273 DQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTR 332
Query: 61 IANMRMQQMGQLF 73
+ + Q LF
Sbjct: 333 LEKLSKYQGVNLF 345
>gi|238486326|ref|XP_002374401.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
gi|220699280|gb|EED55619.1| polyadenylate-binding protein [Aspergillus flavus NRRL3357]
Length = 713
Score = 121 bits (304), Expect = 4e-25, Method: Compositional matrix adjust.
Identities = 118/301 (39%), Positives = 143/301 (47%), Gaps = 50/301 (16%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR--IA 62
G+SKGFGFVCFSSP+EA+KAVTEMN R++ KPLYVALAQRK+ R++ L + R I
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIR 489
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI---------RPQP--RWAAAP 111
+ + QP Y QP FYGP Q I PQP A P
Sbjct: 490 QQQAAAAAGMPQP-----YM-----QPAVFYGPGQQGFIPGQRGGIAFPPQPGMVMAGIP 539
Query: 112 QMRPSGQTAQGFPNI-------------PQFRSAPRASTGQTVIRGANMSARPITGQSTM 158
RP GQ FP P F+ P + V G M Q
Sbjct: 540 GGRP-GQYPGPFPGQQGGRGMGPNQQLPPNFQGIPMGAMQGPVPNG--MGYPQGMAQVQF 596
Query: 159 GPRGGGPMQAPGPASVSAAGR---QTGGYNKYPVR----NPGTQPQAQIGGIQPAAAGVQ 211
G GG Q PG ++ R G PV+ PG + Q PA +
Sbjct: 597 GRGAGGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEE 656
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
AV LT+ L+AA P +QKQMLGE L+P IQ PELAGKITGMLLE++N ELL
Sbjct: 657 AV----AGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLS 712
Query: 272 M 272
+
Sbjct: 713 L 713
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV FS+ E A AV EMN + I ++ LYV AQ+K +R+ L QY
Sbjct: 264 DQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQY 319
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 171 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 230
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I ++ ++ +LF+
Sbjct: 231 NVYIKNIDQDVTEEEFRELFE 251
>gi|302142286|emb|CBI19489.3| unnamed protein product [Vitis vinifera]
Length = 621
Score = 120 bits (302), Expect = 5e-25, Method: Compositional matrix adjust.
Identities = 116/315 (36%), Positives = 154/315 (48%), Gaps = 69/315 (21%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G S+G GFV FS+ EEA++A+TEMNG+++ SKPLYVALAQRKE+R+A L +Q+ Q M
Sbjct: 337 GISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ----M 392
Query: 65 RMQQMGQ-------LFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQM 113
R M ++ PG+ P L Q Q FYG I PQ + P M
Sbjct: 393 RPVSMAPSVAPRMPMYPPGA------PGLGQ-QLFYGQGPPAIIPPQAGFGYQQQLVPGM 445
Query: 114 RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPI--------TGQSTMGPRGGGP 165
RP G +P F Q G A P+ Q M PRGG
Sbjct: 446 RPGGAP------MPNFFVPLVQQGQQGQRPGGRRGAGPVQQNQQPVPLMQQQMLPRGGRV 499
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRN-PGT-QPQAQIGGIQPAAAGVQAVHVQGQEPLTS 223
+ P P RN P P A IG P +A +
Sbjct: 500 YRYP------------------PGRNMPDVPMPDAAIGQPMPISA-------------LA 528
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
+ LA A P +Q+ MLGE L+PL+ ++ E+A K+TGMLLE+D E+L++LE E+LKSKV
Sbjct: 529 SALANATPDQQRTMLGESLYPLVDQLEHEMAAKVTGMLLEMDQTEVLHLLESPEALKSKV 588
Query: 284 EEAVAVLQAHQAKQA 298
EA+ VL+ +QA
Sbjct: 589 AEAMDVLRNVAQQQA 603
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
G+SKG+GFV F + E A A+ ++NG +I K +YV RK++R+ L
Sbjct: 143 GQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETAL 191
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 233 DGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSM 290
>gi|225458678|ref|XP_002284923.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147773643|emb|CAN76464.1| hypothetical protein VITISV_017035 [Vitis vinifera]
Length = 640
Score = 120 bits (302), Expect = 7e-25, Method: Compositional matrix adjust.
Identities = 114/327 (34%), Positives = 156/327 (47%), Gaps = 74/327 (22%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G S+G GFV FS+ EEA++A+TEMNG+++ SKPLYVALAQRKE+R+A L +Q+ Q M
Sbjct: 337 GISRGSGFVAFSTSEEASRALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ----M 392
Query: 65 RMQQMGQ-------LFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQM 113
R M ++ PG+ P L Q Q FYG I PQ + P M
Sbjct: 393 RPVSMAPSVAPRMPMYPPGA------PGLGQ-QLFYGQGPPAIIPPQAGFGYQQQLVPGM 445
Query: 114 RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPI--------TGQSTMGPRGGGP 165
RP G +P F Q G A P+ Q M PRGG
Sbjct: 446 RPGGAP------MPNFFVPLVQQGQQGQRPGGRRGAGPVQQNQQPVPLMQQQMLPRGGRV 499
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAV-HVQGQEPLTST 224
+ P P RN P + G+ A G+ ++ + G PL
Sbjct: 500 YRYP------------------PGRN---MPDVPMPGV---AGGMLSIPYDMGGVPLRDA 535
Query: 225 MLA-------------AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
+ A P +Q+ MLGE L+PL+ ++ E+A K+TGMLLE+D E+L+
Sbjct: 536 AIGQPMPISALASALANATPDQQRTMLGESLYPLVDQLEHEMAAKVTGMLLEMDQTEVLH 595
Query: 272 MLEHNESLKSKVEEAVAVLQAHQAKQA 298
+LE E+LKSKV EA+ VL+ +QA
Sbjct: 596 LLESPEALKSKVAEAMDVLRNVAQQQA 622
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 32/49 (65%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
G+SKG+GFV F + E A A+ ++NG +I K +YV RK++R+ L
Sbjct: 143 GQSKGYGFVQFDNEESAQNAIDKLNGMLINDKQVYVGQFLRKQERETAL 191
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 233 DGKSKCFGFVNFENADDAAEAVEALNGKKFDEKEWYVGKAQKKYERELELKGRFEQSM 290
>gi|13560783|gb|AAK30205.1|AF349964_1 poly(A)-binding protein [Daucus carota]
Length = 658
Score = 119 bits (299), Expect = 1e-24, Method: Compositional matrix adjust.
Identities = 113/329 (34%), Positives = 155/329 (47%), Gaps = 93/329 (28%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G S+G GFV FS+PEEA++A+ EMNG++I SKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 359 GISRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQMRPVA 418
Query: 65 RMQQMG---QLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQMRPSG 117
MG ++ PG+ P + Q Q FYG I PQ + P MRP G
Sbjct: 419 MPPSMGPRMPMYSPGA------PGMGQ-QLFYGQAPPAMIAPQAGFGYQQQLVPGMRPGG 471
Query: 118 ------------------------------QTAQGFPNIPQFRSAPRASTGQTVIRGANM 147
QT Q P +PQ Q + RG
Sbjct: 472 GPMPNFFMPMVQQGQQGQRPGGRRGAGPAQQTQQPVPMMPQ----------QLMPRGRMY 521
Query: 148 SARP--ITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQP 205
P G TM GGG + P YN +GG+ P
Sbjct: 522 RFPPGRNVGDVTMPGVGGGMLPVP--------------YN--------------MGGMLP 553
Query: 206 AAAGVQAVHVQGQ-EPLT--STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLL 262
A + GQ P+T ++ LA A +Q+ MLGE L+PL+ ++ + A K+TGMLL
Sbjct: 554 REAAM------GQPMPITALASALANAPADQQRTMLGENLYPLVDQLEHDHAAKVTGMLL 607
Query: 263 EIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
E+D E+L++LE ++LK+KV EA+ VL+
Sbjct: 608 EMDQTEVLHLLESPDALKAKVAEAMDVLR 636
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F +PE+A KAV +NG+ K YV AQ+K +R+ L S++ Q +
Sbjct: 255 DGKSKCFGFVNFENPEDAAKAVDALNGKKFDDKEWYVGKAQKKSEREVELKSRFEQTV 312
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/57 (36%), Positives = 35/57 (61%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
G+SKG+GFV + S E A A+ ++NG ++ K +YV + RK+DR + ++ I
Sbjct: 165 GQSKGYGFVQYDSEEAAQTAIDKLNGMLMNDKQVYVGVFLRKQDRDSEMSKTKFNNI 221
>gi|294884831|gb|ADF47427.1| poly(A) binding protein cytoplasmic-2, partial [Dugesia japonica]
Length = 309
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 71/127 (55%), Positives = 78/127 (61%), Gaps = 17/127 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ RSKGFGFVCFS+PEEATKAVTEMNG+I GSKPLYVALAQRKEDRKAHLASQYMQR+
Sbjct: 34 DSNNRSKGFGFVCFSNPEEATKAVTEMNGKICGSKPLYVALAQRKEDRKAHLASQYMQRV 93
Query: 62 ANMRMQ-----QMGQLFQPGSTGG------YFVPTLPQPQRFYGPTQMTQIR-PQPRWAA 109
R + L G GG F P P R Y TQ PQ RW+
Sbjct: 94 NPHRSSYPNQVSVNTLISGGPPGGPSILPYAFAPNASTP-RVY--TQSAAFMPPQNRWSN 150
Query: 110 APQMRPS 116
+M PS
Sbjct: 151 --RMHPS 155
>gi|74762343|sp|Q6NV95.1|PAB1L_HUMAN RecName: Full=Putative protein PABPC1-like; AltName:
Full=Polyadenylate-binding protein pseudogene 2
gi|158258146|dbj|BAF85046.1| unnamed protein product [Homo sapiens]
Length = 269
Score = 119 bits (297), Expect = 2e-24, Method: Compositional matrix adjust.
Identities = 61/114 (53%), Positives = 76/114 (66%), Gaps = 5/114 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E G SK FGFVCFSSPEE KAVT MNG+I+ SKPL+VALAQ KE R AH +QYMQ+
Sbjct: 146 MMEGGCSKRFGFVCFSSPEEVAKAVTAMNGKIVASKPLHVALAQCKEQRLAHFTNQYMQK 205
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA 109
+A++R + +QP + YFV +PQ Q +Y P Q+ Q+RP P WA
Sbjct: 206 MASVRAVPHPVINPYQPAPSTCYFVAAIPQTQNRAAYYPPGQIAQLRPSPPWAV 259
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 20/58 (34%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+ A+ ++NG+ Y+ LA +K + + L ++ Q
Sbjct: 46 DEGGKSKGFGFVSFERHEDPQTAM-DVNGKEFSGNQTYICLAPKKVEEQTELKCKFEQ 102
>gi|356505295|ref|XP_003521427.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 632
Score = 118 bits (296), Expect = 3e-24, Method: Compositional matrix adjust.
Identities = 125/310 (40%), Positives = 161/310 (51%), Gaps = 36/310 (11%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G SKGFGFVCFS+PEEA KAV +G + KPLYVALAQRKEDRKA L QY Q
Sbjct: 326 MRDDKGISKGFGFVCFSTPEEANKAVNTFHGFMFHGKPLYVALAQRKEDRKAQLQLQYAQ 385
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQ---MRPS 116
++A + + GGY P +Y T + P PR Q MRP
Sbjct: 386 QVAGLSGPSTAII-----PGGY-------PPYYYAATGVISHVP-PRAGLMYQHLPMRP- 431
Query: 117 GQTAQGFPNIP--QFRSAP----RASTGQTVIRGANMSARPI----TGQSTMGPRGGGPM 166
G A GF +P F+ +P +T Q ++ PI T T P+
Sbjct: 432 GWGANGFA-LPARSFQQSPVPAVSNNTRQHRQNRGRLNGNPIAQGNTHSVTYLPQA---Q 487
Query: 167 QAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTML 226
Q P S+ ++TG P G Q + G ++ QG E L S ML
Sbjct: 488 QISQPVISSSTQQRTGQAKYLP---SGRQRDMEKGSGSSSSGSNSGRGSQGSEMLHS-ML 543
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
A A P++QK++LGE L+ L+ ++ P LA KITGMLLE+DN ELL +LE ESL +KVEEA
Sbjct: 544 AGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEMDNGELLLLLESPESLSAKVEEA 603
Query: 287 VAVLQAHQAK 296
V VL+ + K
Sbjct: 604 VQVLKNSKTK 613
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G SKGFGFV + +P++A +A+ MNG +GSK LYVA AQ+K +R+ L Q+ ++
Sbjct: 228 GMSKGFGFVNYDNPDDAKRAMEAMNGSKLGSKILYVARAQKKAEREQILHHQFEEK 283
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/66 (42%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLAS 55
MSEDG+SKG+GFV F S E + A+ ++NG +G K LYV +K DR A +
Sbjct: 133 MSEDGKSKGYGFVQFESEESSNVAIEKLNGSTVGDKQLYVGKFVKKSDRILPGPDARYTN 192
Query: 56 QYMQRI 61
YM+ +
Sbjct: 193 LYMKNL 198
>gi|149244358|ref|XP_001526722.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
gi|158514320|sp|A5DW14.1|PABP_LODEL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|146449116|gb|EDK43372.1| polyadenylate-binding protein [Lodderomyces elongisporus NRRL
YB-4239]
Length = 661
Score = 118 bits (295), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 109/315 (34%), Positives = 146/315 (46%), Gaps = 65/315 (20%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G+SKGFGFVCFS+PEEATKA+TEMN R++ KPLYVALAQRK+ R++ L Q
Sbjct: 383 MVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQA 442
Query: 60 RIANMRMQQM-------GQLFQPGSTG--GYFVPTLPQPQRFYGPT--QMTQIRPQPRWA 108
R MRMQ GQ P G G+F P F GP M + R QP
Sbjct: 443 R-NQMRMQNAAAAGGLPGQFMPPMFYGQQGFFPPNGRGNAPFPGPNPQMMMRGRGQPFPE 501
Query: 109 AAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA 168
P+ P+GQ + PQF+ G NM RP Q
Sbjct: 502 QWPRPGPNGQPVPVYGMPPQFQD----------FNGQNM--RPQQQQQQQ---------- 539
Query: 169 PGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
+Q GY YP R PA V A + + ++A
Sbjct: 540 ---QQQQQQQQQQRGY--YPNR--------------PAGGNVPAKDL-------AALIAN 573
Query: 229 AQPQEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
A + QK++LGE L+ I + PE AGKITGM+L ++N E+L +L+ E + E
Sbjct: 574 APLEAQKRILGEELYQRIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDEELFNNHFE 633
Query: 285 EAVAVLQAHQAKQAA 299
EA+ + ++ + A
Sbjct: 634 EALNAFEEYKNSEGA 648
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RIA 62
+G+SKGFGFV F E A KAV E+N + I + +YV AQ+K +R L QY R+
Sbjct: 284 EGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLE 343
Query: 63 NMRMQQMGQLF 73
+ Q LF
Sbjct: 344 KLSKYQGVNLF 354
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
G+SK FGFV + + E A A+ +NG ++ + +YV K+DR++ L
Sbjct: 192 GQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKL 240
>gi|254567738|ref|XP_002490979.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|238030776|emb|CAY68699.1| Poly(A) binding protein, part of the 3'-end RNA-processing complex,
mediates interactions between th [Komagataella pastoris
GS115]
gi|328352488|emb|CCA38887.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Komagataella pastoris CBS 7435]
Length = 626
Score = 117 bits (294), Expect = 5e-24, Method: Compositional matrix adjust.
Identities = 105/304 (34%), Positives = 139/304 (45%), Gaps = 67/304 (22%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E+G+S+GFGFVC S+PEEATKA++EMN R++ +KPLYVALAQ K R++ LA Q R
Sbjct: 369 LDENGKSRGFGFVCLSTPEEATKAISEMNQRMVANKPLYVALAQPKAIRRSQLAQQIQAR 428
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
MRMQQ PG + P FYG P M P G
Sbjct: 429 -NQMRMQQQA---GPGIPNQFVQPI------FYG--------------QQPGMLPPGARV 464
Query: 121 QGFPN-IPQFRSAPRAS---TGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSA 176
N IPQF PR GQ N P+ GQ G GP Q
Sbjct: 465 PPMGNQIPQFAGMPRPGPFPQGQFPRMAPNGQPMPVYGQPVFN--GNGPQQR-------- 514
Query: 177 AGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQ 236
GY YP + G AA + Q PL ++QK+
Sbjct: 515 ------GY--YPNNRQNKNRNQKEEGNSLAA-------ILPQLPL----------EQQKR 549
Query: 237 MLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
+LGE L+P + + PE AGKITGM+L++DN E+L +LE E + EA+ +
Sbjct: 550 VLGEELYPKVVATNKTQDPEAAGKITGMILDLDNQEILQLLEDEELFNTHFNEALQAYEE 609
Query: 293 HQAK 296
+++K
Sbjct: 610 YKSK 613
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 42/74 (56%), Gaps = 1/74 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQ 59
+ +G +KGFGFV F+ ++A KAV +N + KPLYV AQ+K +R L +Y
Sbjct: 266 VDSEGHNKGFGFVNFAEHDDAVKAVEALNDKEYKGKPLYVGRAQKKNERVHELTKKYEAD 325
Query: 60 RIANMRMQQMGQLF 73
R+ ++ Q LF
Sbjct: 326 RLEKLQKYQSVNLF 339
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/62 (37%), Positives = 36/62 (58%), Gaps = 4/62 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G SKGFGFV + S E A A+ +NG ++ + +YV K+DR+ S++ + I
Sbjct: 174 DENGNSKGFGFVHYESDEAAQAAIENINGMLLNGREIYVGPHLAKKDRE----SRFQEMI 229
Query: 62 AN 63
N
Sbjct: 230 KN 231
>gi|149042979|gb|EDL96553.1| similar to MGC89376 protein (predicted) [Rattus norvegicus]
Length = 192
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 64/131 (48%), Positives = 79/131 (60%), Gaps = 9/131 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QY +R
Sbjct: 1 MTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRR 60
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPSG 117
++ + QP S Y +P + Q +Y + ++P PRW A P S
Sbjct: 61 LSR---SVLSSFQQPTS---YLLPAVHQSTTQTMYYSSASIAPMQPDPRWTAQPHGPSSA 114
Query: 118 QTAQGFPNIPQ 128
Q P
Sbjct: 115 SVVQPLSTAPH 125
>gi|154322853|ref|XP_001560741.1| hypothetical protein BC1G_00769 [Botryotinia fuckeliana B05.10]
gi|347837080|emb|CCD51652.1| similar to polyadenylate-binding protein [Botryotinia fuckeliana]
Length = 790
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 124/342 (36%), Positives = 164/342 (47%), Gaps = 61/342 (17%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ----RKEDRKAHLASQYMQR 60
G+SKGFGFVCF++P+EATKAV++MN R++ +KPLYVALAQ RK +A + ++ R
Sbjct: 432 GKSKGFGFVCFNNPDEATKAVSDMNQRMVNNKPLYVALAQRKDVRKSQLEASIQARNQIR 491
Query: 61 I------ANMRMQQMG--QLFQPGSTGGYFVPT------------LPQPQRFYG-PTQMT 99
+ A M Q M F PG+ F+P +P P G P Q
Sbjct: 492 MQQAAAQAGMPQQYMQAPMFFPPGAQQPGFLPQGGRGMQFPPQAGMPIPGAQGGRPGQFQ 551
Query: 100 QIRP---QPRWAAAPQMRPSGQTAQG---FP--------NIPQFRSAPRASTGQTVIRGA 145
P R A A Q P G FP N PQF +A +A+ T RG
Sbjct: 552 AGFPPQQAGRGAPAGQQMPPNMYGMGPGQFPAGGQYPQQNNPQFLAAMQAAQ-LTAGRGG 610
Query: 146 NMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNP-GTQPQAQIGGIQ 204
+ P+ G M P PM G RQ G P R +P GG
Sbjct: 611 PNARGPMQG---MPPNMAMPMGQQGMPQFQQGARQGG----MPGRGAQAGRPGQFAGGFP 663
Query: 205 PAAA--------GVQAVHVQGQEP-LTSTMLAAAQPQEQ----KQMLGERLFPLIQRMYP 251
P A G+Q + QE + +TML A KQ+LGE LFP IQ + P
Sbjct: 664 PQAGRGMPQQIPGMQQIPQMAQEGGVPATMLQAQVQAVAPQQQKQILGEALFPKIQVLQP 723
Query: 252 ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
ELAGKITGMLLE++N EL+ ++E + SL++KV+EA+ V +
Sbjct: 724 ELAGKITGMLLEMENQELINLIEDDASLRAKVDEALTVYDEY 765
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV F + E A AV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 277 AETGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRSY 332
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A +A+ +NG ++ K ++V K+DR KA+
Sbjct: 183 DESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFT 242
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 243 NIYVKNI 249
>gi|70663933|emb|CAE02947.3| OSJNBa0014K14.19 [Oryza sativa Japonica Group]
Length = 657
Score = 117 bits (293), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 110/320 (34%), Positives = 145/320 (45%), Gaps = 63/320 (19%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G SKG GFV FS+ +TEMNG++I KPLYVA AQRKEDRKA L +Q+ Q
Sbjct: 357 NGVSKGSGFVAFST--LPFIQLTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQ---- 410
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQ--------PQRFYGPTQMTQIRPQPRWA----AAP 111
+P P LP Q FYG + PQP + P
Sbjct: 411 ---------VRPVPMTPSMAPRLPMYPPMAPLGQQLFYGQAPPAIMPPQPGFGFQQQLVP 461
Query: 112 QMRPSGQTAQGF--PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRG------- 162
MRP G + P + Q + PR ++ A Q M PRG
Sbjct: 462 GMRPGGAHMPNYFVPVVQQGQQGPRPGIRRSGAGSAQGQQSAQPFQQQMLPRGRVYRYPP 521
Query: 163 --GGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEP 220
P P P V+ Q+ +PVR+ G P A IG + A
Sbjct: 522 AHNMPDVPPMPG-VAGGMIQSYDMGGFPVRDAGLSP-APIGTLTSA-------------- 565
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LA A P++Q+ +LGE L+PL++ + A K+TGMLLE+D E+L++LE E+LK
Sbjct: 566 -----LANANPEQQRTILGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALK 620
Query: 281 SKVEEAVAVL----QAHQAK 296
SKV EA+ VL Q H A
Sbjct: 621 SKVAEAMDVLRNVAQQHNAN 640
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 25/60 (41%), Positives = 40/60 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
DG+S+ FGF+ F SP++A +AV E+NG+ I K YV AQ+K +R+ L ++ Q + +
Sbjct: 254 DGKSRCFGFINFKSPDDAARAVEELNGKKINDKEWYVGRAQKKSEREIELKRRFEQSMKD 313
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
E G+SKGFGFV + E A A+ +NG +I KP+YV RK++R+
Sbjct: 161 DEMGQSKGFGFVQYDKGEAAQSAIKSLNGMLINDKPVYVGPFLRKQERE 209
>gi|281212216|gb|EFA86376.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 562
Score = 117 bits (292), Expect = 9e-24, Method: Compositional matrix adjust.
Identities = 105/291 (36%), Positives = 143/291 (49%), Gaps = 68/291 (23%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RIANMR 65
SKGFGFVC+S+P+EA+KAV EM+GR++GSKPLYVA AQRK+ R+A L +Q+ + + + M
Sbjct: 322 SKGFGFVCYSTPDEASKAVAEMHGRMVGSKPLYVAFAQRKDVRRAQLEAQHTKFKSSRMP 381
Query: 66 MQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQ--PRWAAAPQMRPSGQTAQGF 123
+Q + + PT P FY P M + PQ PR A P Q Q +
Sbjct: 382 VQSI------------YPPTGP---IFYPPAGMPVVYPQMIPRPPRAGWNGPVPQQGQ-Y 425
Query: 124 PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTM-GPRGGGPMQAPGPASVSAAGRQTG 182
P P+ GQ + PRGG P TG
Sbjct: 426 P--------------------------PMQGQYPIRNPRGGVP--------------PTG 445
Query: 183 GYNKYPVRNP-GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQ-MLGE 240
+ P P G QP AQ QP A + A Q +P + + P+EQ+ LGE
Sbjct: 446 NHRNQPRPRPDGQQPAAQ----QPIAQQLIA-EPQAVQPEVTLATVQSMPREQQNSFLGE 500
Query: 241 RLFPLIQRMYPELAGKITGMLLE-IDNAELLYMLEHNESLKSKVEEAVAVL 290
L+PLI P+L+GKITGMLL+ + EL + + E L K++EA+ VL
Sbjct: 501 LLYPLIHASQPDLSGKITGMLLDSLTVEELFTLYQRTELLADKIKEALDVL 551
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 33/56 (58%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+SKGFGF F + A AV NG++ K +YV AQ+K +R+A L ++
Sbjct: 220 DEKGKSKGFGFANFEHADAAKGAVENENGKMFSGKVIYVGRAQKKLEREAELKHKF 275
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 40/78 (51%), Gaps = 5/78 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E SKGFGFV + S E A KA+ ++NG +I ++ ++V + ++R A +Y
Sbjct: 130 DETNTSKGFGFVHYESQESAEKAIAKVNGMMINNQKVFVGPFKSSKERGATQEVKYTNVF 189
Query: 62 A-----NMRMQQMGQLFQ 74
++ QQ+ L Q
Sbjct: 190 IKNLSEDVSEQQLTDLLQ 207
>gi|119612222|gb|EAW91816.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
gi|119612227|gb|EAW91821.1| poly(A) binding protein, cytoplasmic 1, isoform CRA_c [Homo
sapiens]
Length = 419
Score = 116 bits (291), Expect = 1e-23, Method: Compositional matrix adjust.
Identities = 53/65 (81%), Positives = 61/65 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMR 65
+A++R
Sbjct: 386 MASVR 390
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
>gi|68468953|ref|XP_721535.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|68469502|ref|XP_721264.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|74680286|sp|Q5AI15.1|PABP_CANAL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46443173|gb|EAL02457.1| hypothetical protein CaO19.10555 [Candida albicans SC5314]
gi|46443455|gb|EAL02737.1| hypothetical protein CaO19.3037 [Candida albicans SC5314]
gi|238879187|gb|EEQ42825.1| polyadenylate-binding protein [Candida albicans WO-1]
Length = 629
Score = 115 bits (289), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 149/318 (46%), Gaps = 83/318 (26%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVCF++PEEATKA+TEMN R+I KPLYVALAQRK+ R++ L Q R
Sbjct: 369 VDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQAR 428
Query: 61 IANMRMQQM------GQLFQPGSTG--GYFVPT------LPQPQRFYGPTQMTQIRPQPR 106
MRMQ GQ P G G+F P P P P M + R QP
Sbjct: 429 -NQMRMQNAAAGGLPGQFIPPMFYGQQGFFPPNGRGNAPYPGP----NPQMMMRGRGQPF 483
Query: 107 WAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPM 166
P+ P+GQ + PQF Q G NM RP Q PRGG
Sbjct: 484 PEQWPRPGPNGQPVPVYGIPPQF---------QQDFNGQNM--RPQQ-QQQQQPRGG--- 528
Query: 167 QAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTML 226
YP RN ++ + AA + +V
Sbjct: 529 -------------------YYPNRNQTSK--------RDLAAIISSV------------- 548
Query: 227 AAAQPQE-QKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
PQ+ QK++LGE L+P I + PE AGKITGM+L ++N E+L +L+ +E +
Sbjct: 549 ----PQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDDELFNN 604
Query: 282 KVEEAVAVLQAHQAKQAA 299
E+A+ + ++ +AA
Sbjct: 605 HFEDALTAFEEYKKSEAA 622
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+DG+SKGFGFV F E A KAV E+N + I + +YV AQ+K +R L QY
Sbjct: 267 DQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQY 322
>gi|308486599|ref|XP_003105496.1| CRE-PAB-2 protein [Caenorhabditis remanei]
gi|308255462|gb|EFO99414.1| CRE-PAB-2 protein [Caenorhabditis remanei]
Length = 730
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 52/68 (76%), Positives = 60/68 (88%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E+GRSKGFGFVCF PEEAT AVTEMN ++IG+KPLYVALAQRKEDR+A LASQYMQR
Sbjct: 374 VDENGRSKGFGFVCFEKPEEATAAVTEMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQR 433
Query: 61 IANMRMQQ 68
+A +RM Q
Sbjct: 434 LATLRMGQ 441
Score = 100 bits (249), Expect = 9e-19, Method: Compositional matrix adjust.
Identities = 50/84 (59%), Positives = 64/84 (76%), Gaps = 2/84 (2%)
Query: 213 VHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYP--ELAGKITGMLLEIDNAELL 270
+ + GQE LTS MLA A PQEQKQ+LGER++ LI++M+P + AGKITGM+LEIDNAEL+
Sbjct: 634 IVISGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELI 693
Query: 271 YMLEHNESLKSKVEEAVAVLQAHQ 294
ML+ + +SKVEEA VL Q
Sbjct: 694 MMLQDEDLFRSKVEEAFTVLSNAQ 717
Score = 43.9 bits (102), Expect = 0.092, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 32/58 (55%), Gaps = 2/58 (3%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVAL--AQRKEDRKAHLASQY 57
G+ KGFGFV F P+ A KAV +N + L +++ AQ+K +R A L +Y
Sbjct: 270 DNSGKPKGFGFVAFVDPDAAIKAVDTLNESTLEGTDLKLSVCRAQKKSERTAELKRKY 327
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 36/70 (51%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G SKG+GFV F + A A+ ++NG ++ K ++V Q + R L + +
Sbjct: 177 DEEGNSKGYGFVHFETEASALTAIEKVNGMLLSDKKVFVGKFQPRAQRMKELGESGL-KY 235
Query: 62 ANMRMQQMGQ 71
N+ ++ G
Sbjct: 236 TNVFIKNFGD 245
>gi|196476779|gb|ACG76254.1| polyadenylate binding protein II-like protein [Amblyomma
americanum]
Length = 145
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 63/90 (70%), Positives = 68/90 (75%), Gaps = 7/90 (7%)
Query: 24 AVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRMQQMGQLFQPGSTG--GY 81
AVTEMNGRI+ SKPLYVALAQRKEDRKAHLASQYM RIA MRM QMGQ+F PG G GY
Sbjct: 1 AVTEMNGRIVVSKPLYVALAQRKEDRKAHLASQYMHRIAGMRM-QMGQMFPPGGAGAAGY 59
Query: 82 FVPTLPQ--PQRFYGPTQMT--QIRPQPRW 107
FVPT+P QR Y P + Q+R PRW
Sbjct: 60 FVPTMPHQTAQRSYFPATLNPAQMRATPRW 89
>gi|241948533|ref|XP_002416989.1| ARS consensus binding protein, putative; poly(A)-binding protein,
putative; polyadenylate tail-binding protein, putative;
polyadenylate-binding protein, cytoplasmic and nuclear,
putative [Candida dubliniensis CD36]
gi|223640327|emb|CAX44577.1| ARS consensus binding protein, putative [Candida dubliniensis CD36]
Length = 627
Score = 114 bits (285), Expect = 5e-23, Method: Compositional matrix adjust.
Identities = 108/318 (33%), Positives = 147/318 (46%), Gaps = 83/318 (26%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G+SKGFGFVCF++PEEATKA+TEMN R+I KPLYVALAQRK+ R++ L Q
Sbjct: 367 MVDDAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQA 426
Query: 60 RIANMRMQQM------GQLFQPGSTG--GYFVPT------LPQPQRFYGPTQMTQIRPQP 105
R MRMQ GQ P G G+F P P P P M + R QP
Sbjct: 427 R-NQMRMQNAAAGGLPGQFMPPMFYGQQGFFPPNGRGNAPYPGP----NPQMMMRGRGQP 481
Query: 106 RWAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGP 165
P+ P+GQ + PQF Q G NM RP Q PRGG
Sbjct: 482 FPEQWPRPGPNGQPVPVYGIPPQF---------QQDFNGQNM--RPQQQQQQ--PRGG-- 526
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
YP RN Q + + +
Sbjct: 527 --------------------YYPNRN------------------------QTNKRDLAAI 542
Query: 226 LAAAQPQEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
+++ +QK++LGE L+P I + PE AGKITGM+L ++N E+L +L+ +E +
Sbjct: 543 ISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDDELFNN 602
Query: 282 KVEEAVAVLQAHQAKQAA 299
E+A+ + ++ +AA
Sbjct: 603 HFEDALTAFEEYKKSEAA 620
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 36/56 (64%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+DG+SKGFGFV F + + A KAV E+N + I + +YV AQ+K +R L QY
Sbjct: 266 DQDGKSKGFGFVNFENHDSAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQY 321
>gi|339255630|ref|XP_003370810.1| polyadenylate-binding protein 1-A [Trichinella spiralis]
gi|316959974|gb|EFV47819.1| polyadenylate-binding protein 1-A [Trichinella spiralis]
Length = 174
Score = 113 bits (283), Expect = 8e-23, Method: Compositional matrix adjust.
Identities = 58/91 (63%), Positives = 69/91 (75%)
Query: 211 QAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELL 270
+ V G EPLTS+ML++A PQEQKQMLGERLFPLI ++ +LAGKITGMLLE+DN ELL
Sbjct: 54 HGIMVHGHEPLTSSMLSSAPPQEQKQMLGERLFPLIMEIHKDLAGKITGMLLEMDNGELL 113
Query: 271 YMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
MLE + L +KV EAV VL+ HQ K A K
Sbjct: 114 NMLESPDLLNAKVTEAVRVLKEHQHKSEAEK 144
>gi|384496545|gb|EIE87036.1| hypothetical protein RO3G_11747 [Rhizopus delemar RA 99-880]
Length = 616
Score = 112 bits (281), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 72/132 (54%), Positives = 84/132 (63%), Gaps = 18/132 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFSSP+EATKAVTEMNGR+IGSKP+YVALAQRKE R++ L +Q QR
Sbjct: 357 DEKGTSKGFGFVCFSSPDEATKAVTEMNGRMIGSKPIYVALAQRKEVRRSQLEAQMAQR- 415
Query: 62 ANMRMQQMGQL-----FQPGSTGGYFVP--TLPQPQR--FYGPTQMTQIRPQPRWAAAPQ 112
MRMQQ + + PG+ Y P +PQ QR + P M P+PRW APQ
Sbjct: 416 NQMRMQQGMPMPGAPGYMPGAPMFYAPPGQFMPQGQRPTVFAPNNMM---PRPRW--APQ 470
Query: 113 MRPSGQTAQGFP 124
GQ GFP
Sbjct: 471 ---QGQPVAGFP 479
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/62 (66%), Positives = 50/62 (80%)
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
+ QKQMLGERL+PLI PE AGKITGMLLE+DN ELL +LE +++L SK+ EAV VL+
Sbjct: 545 ETQKQMLGERLYPLINAQQPEYAGKITGMLLEMDNGELLNLLEDSKALDSKINEAVEVLK 604
Query: 292 AH 293
AH
Sbjct: 605 AH 606
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 46/152 (30%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
E+G+SKGFGF+ F + E+A KAV +N K LYVA AQ+K +R+ L QY Q +
Sbjct: 254 DEEGKSKGFGFINFENYEDAHKAVDTLNETEHNGKTLYVARAQKKTEREEELRKQYEQAK 313
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+ + Q L+ L Q YG +A M T+
Sbjct: 314 LEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSVYGVI-----------TSAKVMCDEKGTS 362
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
+GF + F S A+ T + G + ++PI
Sbjct: 363 KGFGFVC-FSSPDEATKAVTEMNGRMIGSKPI 393
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G SKG+GFV + + E A A+ ++G ++ K +YV +++R+A + Q +
Sbjct: 160 LDESGNSKGYGFVHYETEEAADNAIKHVDGMLLNDKKVYVGRHIPRKERQAKI-EQIRAK 218
Query: 61 IANMRMQQMGQ 71
N+ ++ + +
Sbjct: 219 FTNVYVKNLDE 229
>gi|294892363|ref|XP_002774026.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239879230|gb|EER05842.1| Polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 636
Score = 112 bits (280), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 100/301 (33%), Positives = 144/301 (47%), Gaps = 56/301 (18%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G S+GFGFVCF++ + KA+ M+ ++ G KPL+VA+A++++
Sbjct: 377 GVSRGFGFVCFANQADGEKAIQAMHLKLYGGKPLFVAVAEKRD----------------A 420
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGFP 124
R++++ Q ++ G G F Q + GP P P + + Q R G
Sbjct: 421 RIERLQQRYRAGIPMGGFQQNY---QGYRGPRNFNAPNPSPMYYSGGQNRQGGMMQGPPG 477
Query: 125 NIPQF-------RSAPRASTGQTVIRGANMSARPITGQSTMG----PRGGGPMQAPGPAS 173
+ P S G V RG RP TG + M PRG P Q P
Sbjct: 478 GFVGGPRGPMGAQRGPMMSGGYPVNRGP----RP-TGPNMMPMNQPPRGNFPPQQRFP-- 530
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQA---VHVQGQEPLTSTMLAAAQ 230
G+Q G + Q GG+ P Q + Q P+T+ LA+A
Sbjct: 531 ----GQQGGPF------------MGQQGGMPPRMMPEQHNMPMPHQNPPPMTAAALASAP 574
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P QKQMLGERLF LI + P LAGKITGM+LE+DN+ELL +++ ++ L+ K++EAV VL
Sbjct: 575 PGLQKQMLGERLFTLISKYQPTLAGKITGMMLEMDNSELLMLIDSDQQLRMKIDEAVRVL 634
Query: 291 Q 291
Q
Sbjct: 635 Q 635
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 34/48 (70%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+DG+S+G+GFV F + E A KA+T++NG +IG K +YV Q+ +R
Sbjct: 156 DDDGKSRGYGFVHFENDESAHKAITKLNGMMIGEKAVYVGPFQKHAER 203
>gi|71018821|ref|XP_759641.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
gi|74701642|sp|Q4P8R9.1|PABP_USTMA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|46099399|gb|EAK84632.1| hypothetical protein UM03494.1 [Ustilago maydis 521]
Length = 651
Score = 111 bits (278), Expect = 4e-22, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 165/307 (53%), Gaps = 59/307 (19%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G S+GFGFVC+S+PEEA KAV+EMNG+++ ++PLYVALAQRK+ R+ L +Q MQR
Sbjct: 367 GVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQRNQLR 426
Query: 65 RM-----QQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAA---PQ---M 113
Q MG PG G Y+ PQP F P Q + P+PR+A A PQ M
Sbjct: 427 LQQQAAAQGMGY---PGP-GMYY----PQPGAF--PGQPGGMVPRPRYAPAGMMPQGMPM 476
Query: 114 RPSGQTAQGFPN--IPQ-FRSA--PRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA 168
P GQ Q FP +PQ +R A PR + ARP TG + A
Sbjct: 477 APYGQPGQ-FPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPPTGVNG----------A 525
Query: 169 PGPASVSAAGRQTGGYNKYPV-RNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
P PA G+ P+ R P +P + QP A T+ LA
Sbjct: 526 PRPAGQPVPGQ--------PMPRGPAARPAGRPEADQPGAL-------------TAAALA 564
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
A P+EQKQMLGE ++P + PELAGK+TGM+LE+ ELL++LE +E+L +KV EA+
Sbjct: 565 KASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEAL 624
Query: 288 AVLQAHQ 294
VL+ +Q
Sbjct: 625 EVLKEYQ 631
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV F EA KAV E++ + L+VA AQ+K +R+ L Y
Sbjct: 261 DEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
>gi|348677381|gb|EGZ17198.1| hypothetical protein PHYSODRAFT_354553 [Phytophthora sojae]
Length = 317
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 97/300 (32%), Positives = 146/300 (48%), Gaps = 46/300 (15%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR--KAHLASQYMQRIA 62
G SKG+G+V + + E AT+A+ ++NG +I ++V Q+++DR + Y++ I
Sbjct: 53 GASKGYGYVHYETAEAATEAIAKINGMLIAGTEVFVGHFQKRQDRPDADDWTNCYVKNI- 111
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ- 121
P ++ + + P + +A M+ + Q
Sbjct: 112 --------------------------PTQWTDADLLKEFEPFGKVLSAVVMKDNANPEQN 145
Query: 122 ---GFPNIPQFRSAPRAS---TGQTVIRGANMSARPITGQS-TMGPRGGGPMQAPGPASV 174
GF N +A +A G++ G + G++ R +
Sbjct: 146 RGFGFVNYEDSEAAHKAVDALNGKSYPAGEGVETELYVGKAQKRSERERELRNKFEQLKM 205
Query: 175 SAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQ 234
+ T +P R+ PQ G+ P AA VQ G EPLTS LAAA P+ Q
Sbjct: 206 ERINKYTANARNHPARD--VPPQ----GVMPPAAPVQNA---GPEPLTSAALAAASPEIQ 256
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
K M+GERL+PLI R PELAGKITGMLLE+DN ELL++LE E+L++K+ EA+AVL+AHQ
Sbjct: 257 KNMIGERLYPLIHRQQPELAGKITGMLLEMDNGELLHLLESPEALEAKISEALAVLEAHQ 316
>gi|1262583|dbj|BAA02244.1| polyadenylate binding protein II [Homo sapiens]
Length = 193
Score = 111 bits (277), Expect = 5e-22, Method: Compositional matrix adjust.
Identities = 50/55 (90%), Positives = 53/55 (96%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLAS 55
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +
Sbjct: 137 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTN 191
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 38 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 93
>gi|385305672|gb|EIF49630.1| polyadenylate-binding protein [Dekkera bruxellensis AWRI1499]
Length = 655
Score = 110 bits (275), Expect = 8e-22, Method: Compositional matrix adjust.
Identities = 101/315 (32%), Positives = 151/315 (47%), Gaps = 63/315 (20%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M+ D G+S+GFGFVC++ PEEAT+A+ EM+ R++ KPLYVALAQRKE R L+ Q+ Q
Sbjct: 377 MTNDAGKSRGFGFVCYTKPEEATRAINEMHQRMVMGKPLYVALAQRKEVRHNQLSQQFQQ 436
Query: 60 RIANMRMQQ------MGQLFQP---GSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRW 107
R MR+QQ MGQ P G G F+P +P R F G
Sbjct: 437 R-NQMRLQQAAVQGGMGQFVAPMFYGQNAG-FIPPMPAGVRGAPFAGN------------ 482
Query: 108 AAAPQM---RPSGQTAQGFPNIP-QFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGG 163
APQM + + + QG P P QFR P GQ V M +P+ + +
Sbjct: 483 -GAPQMMMQQGASRPGQGVPVSPGQFRVGP---NGQPVP----MYMQPMFNEYQQQQQQQ 534
Query: 164 GPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTS 223
+ AG + G PG + +A AA V + + +
Sbjct: 535 QRYYQRQNHGNAPAGAEKKG------DKPGEEQEA-------AATAVNSASL-------A 574
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRM----YPELAGKITGMLLEIDNAELLYMLEHNESL 279
L P++QK+ LGE L+ I+ E GKITGM+L +DN ++L ML+ +
Sbjct: 575 DFLPKLAPEQQKRALGEELYAKIEATGKASDKEAVGKITGMMLSMDNKQILDMLKDDALF 634
Query: 280 KSKVEEAVAVLQAHQ 294
++ ++A++ ++++
Sbjct: 635 NTQFQQALSAYESYK 649
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/59 (40%), Positives = 36/59 (61%), Gaps = 1/59 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGR-IIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+++GFGFV F EA KAV +N + + G + LYV AQ+K +R+ L Q+ Q
Sbjct: 275 DNEGKARGFGFVNFEDHXEAAKAVDALNEKELEGGRILYVGRAQKKREREESLRKQWQQ 333
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/69 (30%), Positives = 39/69 (56%), Gaps = 1/69 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFV + E A A+ +NG ++ + +YVA ++DR++ + + ++
Sbjct: 182 DEHGHSKGFGFVHYDDAESAKAAIENVNGMLLNNMEVYVAPHIPRKDRESKM-QEMIKNF 240
Query: 62 ANMRMQQMG 70
N+ ++ G
Sbjct: 241 TNVYVKNFG 249
>gi|255731137|ref|XP_002550493.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
gi|240132450|gb|EER32008.1| polyadenylate-binding protein [Candida tropicalis MYA-3404]
Length = 633
Score = 110 bits (274), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 106/319 (33%), Positives = 148/319 (46%), Gaps = 82/319 (25%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G+SKGFGFVCF++PEEATKA+TEMN R++ +KPLYVALAQRK+ R++ L Q
Sbjct: 365 MVDDAGKSKGFGFVCFTTPEEATKAITEMNQRMVNNKPLYVALAQRKDVRRSQLEQQIQA 424
Query: 60 RIANMRMQQM-------GQLFQPGSTG--GYFVPT------LPQPQRFYGPTQMTQIRPQ 104
R MRMQ GQ P G G+F P P P P M + R Q
Sbjct: 425 R-NQMRMQNAAAAGGLPGQFMPPMFYGQQGFFPPNGRGNAPFPGP----NPQMMMRGRGQ 479
Query: 105 PRWAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGG 164
P P+ P+GQ + PQF+ + GQ V RP Q PRGG
Sbjct: 480 PFPEQWPRPGPNGQPVPVYGIPPQFQ---QDFNGQNV--------RPPQQQQQQQPRGG- 527
Query: 165 PMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTST 224
YP RN Q + +
Sbjct: 528 ---------------------YYPNRN------------------------QTNKRDLAA 542
Query: 225 MLAAAQPQEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
++A+ +QK++LGE L+P I + PE AGKITGM+L ++N E+L +L+ +E
Sbjct: 543 IIASVPQDQQKRILGEELYPRIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDDELFN 602
Query: 281 SKVEEAVAVLQAHQAKQAA 299
+ E+A+ + ++ + A
Sbjct: 603 NHFEDALTAFEEYKKSEGA 621
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+DG+SKGFGFV F + A KAV E+N + I + +YV AQ+K +R L QY
Sbjct: 264 DQDGKSKGFGFVNFEEHDAAVKAVEELNDKEINGQKIYVGRAQKKRERMEELKKQY 319
>gi|324511850|gb|ADY44928.1| Polyadenylate-binding protein 1, partial [Ascaris suum]
Length = 544
Score = 109 bits (273), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 47/66 (71%), Positives = 59/66 (89%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
S+DGRSKGFGFVCF P+EA KA+T M G+++ +KPLYV++AQRKEDRKA +ASQYMQRI
Sbjct: 336 SDDGRSKGFGFVCFDKPDEAVKAMTAMKGKMVCTKPLYVSMAQRKEDRKAFIASQYMQRI 395
Query: 62 ANMRMQ 67
A++RMQ
Sbjct: 396 ASIRMQ 401
Score = 46.6 bits (109), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%), Gaps = 2/56 (3%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQY 57
DG+ GFGFV F +P++A KAV +M + + LYV+ Q+K +R A L +Y
Sbjct: 233 DGKPNGFGFVAFENPDDAEKAVKDMQDYHLPGSDRKLYVSRFQKKCERLAELDRKY 288
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 28/49 (57%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+ E +SKG+GFV F + E A KA+ NG I K +YV Q + +R
Sbjct: 137 VDEQSKSKGYGFVQFETEEAARKAIDGTNGVIFEGKRIYVGRFQSRSER 185
>gi|388854914|emb|CCF51417.1| probable PAB1-mRNA polyadenylate-binding protein [Ustilago hordei]
Length = 648
Score = 109 bits (272), Expect = 2e-21, Method: Compositional matrix adjust.
Identities = 126/299 (42%), Positives = 163/299 (54%), Gaps = 41/299 (13%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G S+GFGFVC+S PEEA KAV+EMNG+++ ++PLYVALAQRK+ R+ L +Q MQR
Sbjct: 365 GVSRGFGFVCYSVPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQRNQLR 424
Query: 65 RM-----QQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT 119
Q MG PG G Y+ PQP F P Q + P+PR+A P+G
Sbjct: 425 LQQQAAAQGMGY---PGP-GMYY----PQPGAF--PGQPGGMVPRPRYA------PAGMM 468
Query: 120 AQGFPNIPQFRSAPRASTGQT---VIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSA 176
QG P AP GQ ++ ARP G P A PA V+
Sbjct: 469 PQGMP------MAPYGQPGQFPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPPAGVNG 522
Query: 177 AGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQE-PLTSTMLAAAQPQEQK 235
A R G PV PG QP + G +PA + V GQ LT+ LA A P+EQK
Sbjct: 523 APRPAG----QPV--PG-QPMPRGPGARPAG---RPQEVAGQPGTLTAAALAKASPEEQK 572
Query: 236 QMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
QMLGE ++P + PELAGK+TGM+LE+ ELL++LE E+L +KV EA+ VL+ +Q
Sbjct: 573 QMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEEQEALDAKVNEALEVLKEYQ 631
Score = 55.1 bits (131), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+DG+SKGFGFV F EEA KAV E++ + L+VA AQ+K +R+ L Y
Sbjct: 259 DDDGKSKGFGFVNFEDHEEAQKAVDELHDSDFHGQKLFVARAQKKSEREEELRRSY 314
>gi|451798952|gb|AGF69179.1| polyadenylate-binding protein 2-like protein, partial [Triticum
aestivum]
Length = 497
Score = 108 bits (269), Expect = 4e-21, Method: Compositional matrix adjust.
Identities = 104/283 (36%), Positives = 137/283 (48%), Gaps = 45/283 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++G SKG GFV FS+ EEA++A+TEMNG++I KPLYVA AQRKEDRKA L +Q+ Q
Sbjct: 239 DQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAMLQAQFSQ-- 296
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQMRPSG 117
MR M P +PTL Q Q FYG + PQP + P MRP G
Sbjct: 297 --MRPVPMTPSMTPRLPMYPPMPTLGQ-QLFYGQAPPAMMPPQPGYGFQQQLVPGMRPGG 353
Query: 118 QTAQGFPN--IPQF---RSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPA 172
PN +P + PR + A P Q M PRG PGP
Sbjct: 354 --GAHMPNYFVPVVQPGQQGPRPGIRRNGPGSAQGQQTPQPFQQQMVPRGCVYRYPPGPR 411
Query: 173 SVSAA----GRQTGG----YN--KYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
+ G GG Y+ +PVR+ G P IG + A
Sbjct: 412 HMPEVQQMPGVGVGGMVQPYDMGSFPVRDAGVSPAPPIGTLTSA---------------- 455
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEID 265
LA A P++Q+ +LGE L+PL++++ + A K+TGMLLE+D
Sbjct: 456 ---LANATPEQQRTILGESLYPLVEKLEHQQAAKVTGMLLEMD 495
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 42/68 (61%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
DG+S+ F FV F SP++A +AV E+NG+ I K YV AQ+K +R+ L ++ Q + +
Sbjct: 138 DGKSRCFDFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKD 197
Query: 64 MRMQQMGQ 71
+ GQ
Sbjct: 198 AADKYQGQ 205
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLAS 55
M + G+SKGFGFV + E A A+ +NG +I KP+YV RK++R KA +
Sbjct: 44 MDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSFDKAKFNN 103
Query: 56 QYMQRIA 62
+++ ++
Sbjct: 104 VFVKNLS 110
>gi|405970795|gb|EKC35670.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 462
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 106/287 (36%), Positives = 135/287 (47%), Gaps = 73/287 (25%)
Query: 13 VCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRMQQMGQL 72
V F PE A KAV +NG K LYV AQ+K +R+A L ++ +RI RM+++ +
Sbjct: 242 VSFEDPEAAEKAVEALNGNDNSGKILYVGRAQKKIERQAELKEKF-ERI---RMERINRY 297
Query: 73 FQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGFPNIPQFRSA 132
+V L + R + +A + QT G P I Q R
Sbjct: 298 ----QGVNLYVKNLDD--------NIDDERLRKEFA-----QFGFQTMPGAPQIRQQRP- 339
Query: 133 PRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNP 192
TGQT +R A +SARPITGQS G Q P + GR GG
Sbjct: 340 ----TGQTNVR-AGVSARPITGQS-----GTPNAQQRMPVNQQVGGRPQGG--------- 380
Query: 193 GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPE 252
QP PAAA Q QG + + QP +
Sbjct: 381 --QPTV------PAAANRQ----QGYKSYGGGQMMKQQP--------------------D 408
Query: 253 LAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
LAGKITGMLLEIDN+ELL+MLE ESL++KV+EAVAVLQAHQAK++A
Sbjct: 409 LAGKITGMLLEIDNSELLHMLESQESLEAKVKEAVAVLQAHQAKESA 455
>gi|379072632|gb|AFC92948.1| poly(A) binding protein, cytoplasmic 1, partial [Rhinophrynus
dorsalis]
Length = 207
Score = 107 bits (266), Expect = 9e-21, Method: Compositional matrix adjust.
Identities = 98/235 (41%), Positives = 120/235 (51%), Gaps = 55/235 (23%)
Query: 57 YMQRIANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP 111
YMQR+A++R + +QP + YF+ T+P Q +Y Q+ Q+RP RW A
Sbjct: 1 YMQRMASVRAVPSTVINPYQPPPSS-YFMATIPPAQNRAAYYPTGQLAQLRP--RWTA-- 55
Query: 112 QMRPSGQTAQGFPNI------------------PQFRSAPRASTGQTVIRGANMSARPIT 153
G F N+ P PR + Q R AN S +
Sbjct: 56 ----QGARPHPFQNMAGPIRPAAPRPPTFSTMRPASNQVPRVVSAQ---RVANTSTQ--- 105
Query: 154 GQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNP--GTQPQAQIGGIQPAAAG 209
TMGPR P A A+ ++ R Y KY VRNP Q Q+ QPA
Sbjct: 106 ---TMGPR---PTAAAAAAAATSTVRTVPQY-KYAAGVRNPQQHLNAQPQVAMQQPA--- 155
Query: 210 VQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEI 264
VHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEI
Sbjct: 156 ---VHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEI 207
>gi|147769692|emb|CAN65531.1| hypothetical protein VITISV_039630 [Vitis vinifera]
Length = 555
Score = 105 bits (263), Expect = 2e-20, Method: Compositional matrix adjust.
Identities = 89/313 (28%), Positives = 148/313 (47%), Gaps = 41/313 (13%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G+S+GFGFV F SP+EA KAV +NG ++GSK L+V AQ+K +R+ L + N
Sbjct: 243 NGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCN 302
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGF 123
+ ++ L+ V + F Q+T +A MR ++GF
Sbjct: 303 IGKEKASNLYVKNLDAS--VDDDKLQEHFSSCGQIT---------SAKVMRHDSGLSKGF 351
Query: 124 PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGG 183
+ F ++ A T + G + R + M R + P + Q G
Sbjct: 352 GFVC-FSTSEEAQKALTTLNGTLLHGRSL--YIAMAQRKEDRQRIPMKQA------QQGN 402
Query: 184 YNKYPVR-NPGTQPQAQI--GGIQPAAAGVQAVHVQ-------GQEPLTST--------M 225
N + + N T +++ G+ A+ Q +H + G E +S +
Sbjct: 403 TNNWGYQQNSRTFATSKVPTQGLNYASPSNQKLHFKKKGNNKSGSEEASSKGSVSEKHFI 462
Query: 226 LAAAQPQ---EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
A AQ K+++G L+PL+ + PELAGKITGMLLE++N++++ +L+ +SL +
Sbjct: 463 RAPAQSNVWGNSKEIIGHHLYPLVHSLQPELAGKITGMLLEMNNSDIIKLLDSPDSLAVQ 522
Query: 283 VEEAVAVLQAHQA 295
VE+AV L+ +A
Sbjct: 523 VEQAVQALKEAKA 535
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 38/47 (80%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+ G SKGFGFVCFS+ EEA KA+T +NG ++ + LY+A+AQRKEDR
Sbjct: 344 DSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDR 390
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+G+SK FGFV F S + AT A+ +N ++ K L+V+ +K +RK AS+ +
Sbjct: 151 ENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKE--ASEE-TKFT 207
Query: 63 NMRMQQMGQ 71
N+ ++ +G+
Sbjct: 208 NVYVKNLGE 216
>gi|195584475|ref|XP_002082032.1| GD11341 [Drosophila simulans]
gi|194194041|gb|EDX07617.1| GD11341 [Drosophila simulans]
Length = 379
Score = 105 bits (261), Expect = 3e-20, Method: Compositional matrix adjust.
Identities = 46/57 (80%), Positives = 53/57 (92%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYM 58
E+GRSKGFGFVCF++ EAT AVTE+NGR++GSKPLYVALAQRKE+RKAHLASQYM
Sbjct: 321 DEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYM 377
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV F + E A AV +NG+ +G K LYVA AQ+K +R+ L ++
Sbjct: 218 EDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKF 273
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A ++ ++NG ++ K +YV +++R+ L + +
Sbjct: 124 DEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 182
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP 84
N+ ++ + F +F P
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEP 205
>gi|406602185|emb|CCH46236.1| Polyadenylate-binding protein, cytoplasmic and nuclear
[Wickerhamomyces ciferrii]
Length = 652
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 102/308 (33%), Positives = 137/308 (44%), Gaps = 75/308 (24%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFV FSSPEEA++A++EMN ++ KPLYVALAQRK+ R++ L Q R
Sbjct: 377 IDESGKSKGFGFVSFSSPEEASRAISEMNQHMLAGKPLYVALAQRKDVRRSQLEQQIQAR 436
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPT----------LPQPQRFYGPTQMTQIRPQPRWAAA 110
+R+QQ G G F+PT LP R P Q I P+P
Sbjct: 437 -NQLRLQQAA---AAGGLPGQFIPTPFIYGQQPQFLPPGARGPLPNQPFLI-PRPGQGLP 491
Query: 111 PQM--------RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRG 162
PQ RP GQ A G P +F+ P+ G G RG
Sbjct: 492 PQAAGGQWVGGRP-GQPAYGLPQ--EFQQFPQGGR-------GGFRGGRGNGPRNQGGRG 541
Query: 163 GGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
P AP P PG AQ+ I P P+
Sbjct: 542 PAPNAAPID----------------PNAQPGAGNVAQLASILPNV------------PV- 572
Query: 223 STMLAAAQPQEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
++QK++LGE L+ I + PE AGKITGM+L+++N E+L +LE+ E
Sbjct: 573 ---------EQQKRLLGEELYQRIVSTGKAQDPESAGKITGMMLDLENQEILSLLENEEL 623
Query: 279 LKSKVEEA 286
K ++A
Sbjct: 624 FKQHFDDA 631
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 37/71 (52%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
+G+S+GF FV + E A K++ +N + K LYV AQ+K +R L QY RI
Sbjct: 277 EGKSRGFAFVNYEEHEAAVKSIESLNDQDYKGKKLYVGRAQKKSERLEELKKQYEAARIE 336
Query: 63 NMRMQQMGQLF 73
+ Q LF
Sbjct: 337 KLTKSQGVNLF 347
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 26/89 (29%), Positives = 49/89 (55%), Gaps = 11/89 (12%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFV F SPE A A+ +NG ++ + +YV + DR++ L + ++ N+
Sbjct: 185 GQSKGFGFVHFESPEAAQAAIENVNGMLLNNNEVYVGPHVARRDRQSKL-EEVIKSFTNV 243
Query: 65 RM---------QQMGQLFQP-GSTGGYFV 83
+ +++ +LF P G+ +++
Sbjct: 244 YVKNIDLEASEEEVKELFTPFGTVTSFYL 272
>gi|119596293|gb|EAW75887.1| hCG2019100, isoform CRA_a [Homo sapiens]
Length = 170
Score = 104 bits (260), Expect = 4e-20, Method: Compositional matrix adjust.
Identities = 65/135 (48%), Positives = 78/135 (57%), Gaps = 29/135 (21%)
Query: 154 GQSTMGPRGGGPMQAPG----PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAG 209
G T GP G G PG P S+A T Y V+ P
Sbjct: 39 GTQTTGPSGVGCC-TPGRPLLPCKCSSAAHST-----YRVQEP----------------- 75
Query: 210 VQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAEL 269
AVH+ GQEPLT++MLAAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+EL
Sbjct: 76 --AVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSEL 133
Query: 270 LYMLEHNESLKSKVE 284
L MLE ESL +K +
Sbjct: 134 LLMLESPESLHAKAQ 148
>gi|405946351|gb|EKC17616.1| Polyadenylate-binding protein 4 [Crassostrea gigas]
Length = 199
Score = 104 bits (259), Expect = 5e-20, Method: Compositional matrix adjust.
Identities = 46/65 (70%), Positives = 56/65 (86%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+EDGRSKGFGFVCF SPEEA KA+ EMN ++I ++PLYVALAQ+K+DRKA LASQYMQR
Sbjct: 94 TEDGRSKGFGFVCFRSPEEAAKAIVEMNEKLIEARPLYVALAQKKQDRKAQLASQYMQRT 153
Query: 62 ANMRM 66
++ M
Sbjct: 154 SSRDM 158
>gi|313214965|emb|CBY41168.1| unnamed protein product [Oikopleura dioica]
Length = 171
Score = 104 bits (259), Expect = 6e-20, Method: Compositional matrix adjust.
Identities = 60/110 (54%), Positives = 77/110 (70%), Gaps = 8/110 (7%)
Query: 189 VRNPGTQP-QAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQ 247
VRNP P +AQI PA Q ++PL +T+LAAA PQEQKQ+LGERL+P I+
Sbjct: 63 VRNPLPTPAEAQI----PAEQAAQPKAPDTEQPLNATILAAAPPQEQKQLLGERLYPSIR 118
Query: 248 RMYPELAGKITGMLLEIDNAELLYMLEHNES---LKSKVEEAVAVLQAHQ 294
++YPEL GKITGMLLEI+N+ELL ML+ + L+ KV+EAV VL H+
Sbjct: 119 QLYPELCGKITGMLLEIENSELLAMLDTKSNPGLLQEKVQEAVTVLTQHR 168
>gi|148223119|ref|NP_001088471.1| uncharacterized protein LOC495336 [Xenopus laevis]
gi|54311231|gb|AAH84798.1| LOC495336 protein [Xenopus laevis]
Length = 711
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 58/109 (53%), Positives = 73/109 (66%), Gaps = 9/109 (8%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+ RSKGFGFVCF++PE+ATKAVTE NGR+ SKPLYVA+AQRKEDR+A LA+++ Q +
Sbjct: 321 NNRSKGFGFVCFTNPEQATKAVTEANGRVEYSKPLYVAIAQRKEDRRAELAAKHTQHLNA 380
Query: 64 MRMQ---QMGQLFQPGSTGGYFVPTLPQPQRFY-GPTQMTQIRPQPRWA 108
+R + L P T YF P PQ R Y P Q+ Q QPRW+
Sbjct: 381 LRSTAPPMIPALMHP--TQNYFHP-YPQQARLYSAPGQLMQ--AQPRWS 424
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 27/50 (54%), Positives = 37/50 (74%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
+G+SKGFGFVC+ +PE A AV M+G+ IG + LY + AQRKE+R+ L
Sbjct: 217 EGKSKGFGFVCYLNPEHAEAAVAAMHGKEIGGRSLYASRAQRKEERQEEL 266
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 23/61 (37%), Positives = 33/61 (54%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+G SKG+GFV F + E A +A+ ++N I K +YV + DRK+ Q
Sbjct: 123 MDENGNSKGYGFVHFENEECAKRAIQKVNNMSICGKVVYVGNFIPRSDRKSQNRKQKFNN 182
Query: 61 I 61
I
Sbjct: 183 I 183
Score = 40.8 bits (94), Expect = 0.81, Method: Compositional matrix adjust.
Identities = 17/58 (29%), Positives = 37/58 (63%), Gaps = 1/58 (1%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRIA 62
+S G+G+V F P++A +A+ +MN ++ +P+ + +QR RK+ L + +++ +A
Sbjct: 41 KSLGYGYVNFEDPKDAERALEQMNYEVVMGRPIRIMWSQRDPSLRKSGLGNIFIKNLA 98
>gi|50547639|ref|XP_501289.1| YALI0C00539p [Yarrowia lipolytica]
gi|74689742|sp|Q6CDH3.1|PABP_YARLI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49647156|emb|CAG81584.1| YALI0C00539p [Yarrowia lipolytica CLIB122]
Length = 629
Score = 103 bits (258), Expect = 7e-20, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 142/307 (46%), Gaps = 53/307 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVC+SSPEEATKAVTEMN R++ KPLYV LAQRK+ R++ L Q +Q
Sbjct: 363 VDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQ-IQA 421
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
MR+QQ + GG + P FY P Q P P G+
Sbjct: 422 KNQMRLQQQ------AAAGGLPGQYMGNPGVFY-PGQ-------------PGFMPPGRGG 461
Query: 121 QGF-PNIPQFRSAPRASTGQTVIRGA----NMSARPITGQSTMGPRGGGPMQAPGPASVS 175
F N P Q RG NM P G +GG P Q P
Sbjct: 462 MPFGANPQMMMRPPMPPQNQFPPRGVPGGPNMYGAPPQGYQ----QGGFPPQGP------ 511
Query: 176 AAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQK 235
GG P R+ PQ Q G G V + +++ + A + Q K
Sbjct: 512 ----MRGG---QPPRSGQPGPQGQFRGAPRRKDGESRV----ADSISNALENAPEEQ-HK 559
Query: 236 QMLGERLFP--LIQRMYP---ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
Q++GE L+P L ++ E AGKITGMLLE+ E+L +++ E L++++ +A+
Sbjct: 560 QLVGEALYPKVLAEKAIDGNAEFAGKITGMLLEMPIKEILEVIDDEEGLQAQINDAITAY 619
Query: 291 QAHQAKQ 297
+ Q
Sbjct: 620 NEYLNSQ 626
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G S+GFGFV + S E A A+ +NG ++ K ++V K DR Q
Sbjct: 168 DEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQ-KNSF 226
Query: 62 ANMRMQQMG 70
N+ ++ +G
Sbjct: 227 TNVFIKNLG 235
>gi|432114066|gb|ELK36113.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 230
Score = 102 bits (255), Expect = 2e-19, Method: Compositional matrix adjust.
Identities = 49/65 (75%), Positives = 58/65 (89%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E G S+GFGFV FSSPEEATKAVTEMNGRI+ +KPL VALAQRKE+R+AHL +QYMQR
Sbjct: 125 MMEGGPSEGFGFVRFSSPEEATKAVTEMNGRIVATKPLCVALAQRKEERQAHLTNQYMQR 184
Query: 61 IANMR 65
+A++R
Sbjct: 185 MASVR 189
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/57 (38%), Positives = 34/57 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M E G SKGFGFV F E+ KAV E+NG+ + K +Y++ A + + + L ++
Sbjct: 23 MDEGGTSKGFGFVSFKRHEDTQKAVDEVNGKELNRKQIYISRAHKTAEWQTELRCKF 79
>gi|296238718|ref|XP_002764276.1| PREDICTED: polyadenylate-binding protein 1-like [Callithrix
jacchus]
Length = 188
Score = 100 bits (250), Expect = 7e-19, Method: Compositional matrix adjust.
Identities = 57/123 (46%), Positives = 76/123 (61%), Gaps = 10/123 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E SKGFGFVCFS PE A KA+TEMNG I+G+K LY+ALAQ KE+++A L +QYMQ
Sbjct: 50 MTEGSHSKGFGFVCFSYPEGAIKAITEMNGCIVGTKLLYMALAQCKEEQRAILTNQYMQH 109
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ + + QP S YF+P + QP +YG +T +P RW + P R
Sbjct: 110 LSTIMTLSNPLLSSFQQPSS---YFLPAVTQPPAQAAYYGCGPVTHTQPACRWMSQPP-R 165
Query: 115 PSG 117
PS
Sbjct: 166 PSS 168
>gi|357117760|ref|XP_003560630.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
5-like [Brachypodium distachyon]
Length = 654
Score = 99.8 bits (247), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 103/313 (32%), Positives = 144/313 (46%), Gaps = 69/313 (22%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGR-IIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ +GRSKGFGFV F++ E A KAV+ N R ++G+K LYV +AQRKE+R A LA+Q+ +
Sbjct: 348 VDSEGRSKGFGFVLFTTIEAANKAVSXRNERKLVGTKLLYVCVAQRKEERSAILAAQFAR 407
Query: 60 R-IANMRMQQMGQLFQPG-STGGYFVP-TLPQPQRF-YGPTQMTQIRPQPRW----AAAP 111
R + R M Q P GY VP L +PQ +G Q PQP AP
Sbjct: 408 RHMVGARTPAMPQNIAPRPFYFGYGVPGVLVRPQATGFGYQQY----PQPVIPGLNPGAP 463
Query: 112 QM------------RPSGQTAQGFPNIPQF-RSAPRASTGQTVIRGANMSARPITGQSTM 158
+ +P Q AQ PN Q R P A G T S M
Sbjct: 464 SLMMPYHMLRPIHHQPQQQMAQ-LPNWNQIVRYMPNACNGPT--------------NSAM 508
Query: 159 GPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQ 218
P+ AP +S V P + I + A A
Sbjct: 509 APQMD--FVAPVVPQISVLTDSV-------VTAPSISEEPSIDSLATALA---------- 549
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
+A+P++Q +LGERL PL+ ++ PE AGK+T MLLE++ A +L ++E E+
Sbjct: 550 ---------SAEPEKQHLILGERLQPLVAQLEPEHAGKVTEMLLELEKAVVLELIESAEN 600
Query: 279 LKSKVEEAVAVLQ 291
L+ KV +A+ L+
Sbjct: 601 LQEKVNQAMESLR 613
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 36/54 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
DG SK FGFV + E A +AV ++NG+II LYV A+RK++R+A L ++
Sbjct: 248 DGESKCFGFVNYEKTEYAEEAVEKLNGKIISDVALYVGRAKRKQERQAELKEKF 301
Score = 44.3 bits (103), Expect = 0.062, Method: Compositional matrix adjust.
Identities = 27/83 (32%), Positives = 43/83 (51%), Gaps = 5/83 (6%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+SKG+GFV F S E A A+ +NG++ K LYV L R+E+R+ H+ +
Sbjct: 155 NGKSKGYGFVQFVSEESAKDAMNALNGKLANGNGKQLYVDLFIRREERQ-HIGGA--SKF 211
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP 84
N+ + + + F F P
Sbjct: 212 TNVYTKNLPKEFTDDDLCRVFAP 234
>gi|302844953|ref|XP_002954016.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
gi|300260828|gb|EFJ45045.1| hypothetical protein VOLCADRAFT_82578 [Volvox carteri f.
nagariensis]
Length = 620
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/78 (61%), Positives = 65/78 (83%)
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
Q+PLT+ LAAA P++QK M+GERL+P + + P+LAGKITGMLLE+DNAELL +LE +E
Sbjct: 536 QQPLTAAALAAAAPEQQKMMIGERLYPQVAELQPDLAGKITGMLLEMDNAELLMLLESHE 595
Query: 278 SLKSKVEEAVAVLQAHQA 295
+L +KV+EA+AVL+ H A
Sbjct: 596 ALVAKVDEAIAVLKIHNA 613
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/52 (48%), Positives = 31/52 (59%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
E G SKGFGF+ F E A K V +N + IG K LY AQ+K +R+A L
Sbjct: 235 DEKGSSKGFGFINFKDAECAAKCVEALNDKEIGGKVLYAGRAQKKTEREAML 286
>gi|2935338|gb|AAC39368.1| poly(A) binding protein RB47 [Chlamydomonas reinhardtii]
Length = 623
Score = 96.7 bits (239), Expect = 1e-17, Method: Compositional matrix adjust.
Identities = 48/77 (62%), Positives = 65/77 (84%)
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
Q+PLT++ LAAA P++QK M+GERL+P + + P+LAGKITGMLLE+DNAELL +LE +E
Sbjct: 539 QQPLTASALAAAAPEQQKMMIGERLYPQVAELQPDLAGKITGMLLEMDNAELLMLLESHE 598
Query: 278 SLKSKVEEAVAVLQAHQ 294
+L SKV+EA+AVL+ H
Sbjct: 599 ALVSKVDEAIAVLKQHN 615
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 32/54 (59%), Gaps = 1/54 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
M +D G SKGFGF+ F E A K V +N R + K LY AQ+K +R+A L
Sbjct: 235 MKDDKGGSKGFGFINFKDAESAAKCVEYLNEREMSGKTLYAGRAQKKTEREAML 288
Score = 38.5 bits (88), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 28/46 (60%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+G SKG+GFV F A +A+ +N + I K +YVA Q++ DR
Sbjct: 150 NGVSKGYGFVHFEDQAAADRAIQTVNQKKIEGKIVYVAPFQKRADR 195
>gi|397575959|gb|EJK49989.1| hypothetical protein THAOC_31088, partial [Thalassiosira oceanica]
Length = 690
Score = 95.9 bits (237), Expect = 2e-17, Method: Compositional matrix adjust.
Identities = 46/78 (58%), Positives = 61/78 (78%)
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
E LT LA+A P+ QK M+GERL+PLI + P+LAGKITGMLLE+DN+ELL++LE E
Sbjct: 610 NEQLTPAALASATPEIQKNMIGERLYPLIHQTQPDLAGKITGMLLEMDNSELLHLLESPE 669
Query: 278 SLKSKVEEAVAVLQAHQA 295
+L +K++EA+ VL AH A
Sbjct: 670 ALGAKIQEALQVLDAHNA 687
Score = 38.5 bits (88), Expect = 3.9, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 38/68 (55%), Gaps = 12/68 (17%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIG--------SKPLYVALAQRKEDRKAHLASQY- 57
S GFGFV F++ E A AV MN ++ K L+V AQ+K +R+A L S+Y
Sbjct: 280 SLGFGFVNFATHEAAAAAVEAMNDKVYKVTEDGDEVEKALFVGRAQKKSERQAELRSKYE 339
Query: 58 ---MQRIA 62
M+RIA
Sbjct: 340 AEKMERIA 347
Score = 37.7 bits (86), Expect = 6.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 29/47 (61%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
E G SKG+G+V + + E A A+ +++G +I K + V + R++ R
Sbjct: 137 ETGLSKGYGYVHYETNEAAASAIDKLDGMLIDGKEVQVGVFMRRDTR 183
>gi|393245425|gb|EJD52935.1| polyadenylate binding protein [Auricularia delicata TFB-10046 SS5]
Length = 665
Score = 95.5 bits (236), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 47/75 (62%), Positives = 57/75 (76%), Gaps = 1/75 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E SKGFGFVCFSSP+EATKAV+EMN ++IGSKPLYV+LAQR+E R+ L +Q QR
Sbjct: 365 DEKNTSKGFGFVCFSSPDEATKAVSEMNNKMIGSKPLYVSLAQRREVRRQQLETQIAQR- 423
Query: 62 ANMRMQQMGQLFQPG 76
+RMQQ Q+ PG
Sbjct: 424 NQIRMQQAAQISGPG 438
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E+G+S+GFGFV F S E+A AV ++ I + LYVA AQ+K +R+ L Y
Sbjct: 262 DEEGKSRGFGFVNFESHEQAAAAVETLHDTEINGRKLYVARAQKKSEREDELRKSY 317
Score = 39.3 bits (90), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 16/52 (30%), Positives = 31/52 (59%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
E G SKG+GFV + + E A A+ +NG ++ K ++V +++R++ +
Sbjct: 169 DEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVFVGHHIPRKERQSKI 220
>gi|410076202|ref|XP_003955683.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
gi|372462266|emb|CCF56548.1| hypothetical protein KAFR_0B02500 [Kazachstania africana CBS 2517]
Length = 582
Score = 95.1 bits (235), Expect = 3e-17, Method: Compositional matrix adjust.
Identities = 63/141 (44%), Positives = 77/141 (54%), Gaps = 26/141 (18%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFSSPEEATKA+TE N +I+ KPLYVA+AQRKE R++ LA Q R
Sbjct: 358 TENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRSQLAQQIQAR- 416
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYG-------------PTQMTQIRPQ---- 104
+ MR QQ + G +P P FYG P QM + PQ
Sbjct: 417 SQMRYQQATAAAAAAAAG---IPGQFMPPMFYGVMPPRGVPFNGPNPQQMNGVPPQQFRN 473
Query: 105 -PRWAAAPQMRPSGQTAQGFP 124
P + PQ P G GFP
Sbjct: 474 GPMYGMPPQGAPQG----GFP 490
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 31/72 (43%), Positives = 40/72 (55%), Gaps = 1/72 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRI 61
EDG+ KGFGFV + + E+A KAV E+N + LYV AQ+K +R L QY R+
Sbjct: 256 EDGKLKGFGFVNYENHEDALKAVEELNNTEFKGQELYVGRAQKKYERMQALKQQYEATRL 315
Query: 62 ANMRMQQMGQLF 73
M Q LF
Sbjct: 316 EKMAKYQGVNLF 327
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE+L+ I + E AGKITGM+L++ E++ +LE++E + EA A
Sbjct: 502 QKQRQALGEQLYKKISAKTSDEEAAGKITGMILDLPPQEVVSLLENDELFEQHFTEASAA 561
Query: 290 LQAHQ 294
+ +
Sbjct: 562 YETFK 566
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 31/52 (59%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
E+G SKGFGFV F A +A+ +NG ++ + +YVA +++R + L
Sbjct: 162 DENGNSKGFGFVHFEEEAAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQL 213
>gi|448519634|ref|XP_003868121.1| poly(A)-binding protein [Candida orthopsilosis Co 90-125]
gi|380352460|emb|CCG22686.1| poly(A)-binding protein [Candida orthopsilosis]
Length = 638
Score = 95.1 bits (235), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 103/314 (32%), Positives = 136/314 (43%), Gaps = 73/314 (23%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ + G+S+GFGFVCFS+PEEATKA+TEMN R++ KPLYVALAQRK+ R++ L Q R
Sbjct: 378 VDDAGKSRGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQAR 437
Query: 61 IANMRMQQM-------GQLFQPGSTG--GYFVPTLPQPQRFYGPT-QMTQIRPQPRWAAA 110
MRMQ GQ P G G+F P F GP QM R QP
Sbjct: 438 -NQMRMQNAAAAAGFPGQFMPPMYYGQQGFFPPGGRGNAPFPGPNPQMMMRRGQPGQPFP 496
Query: 111 PQM-RPSGQTAQGFPNI---PQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPM 166
Q RP G Q P PQF R Q RG P
Sbjct: 497 EQWPRPGGPNGQPVPVYGIPPQFP-----------------DQRAQQQQQQQQQRGYYPG 539
Query: 167 QAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTML 226
QA V+ P A I + P Q + G+E L ++
Sbjct: 540 QA-------------------GVKVPAKDLAAIISSVPPE----QQKRILGEE-LYPRIV 575
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
A + QE PE AGKITGM+L ++N E+L +L+ +E + E+A
Sbjct: 576 ATGKAQE-----------------PEAAGKITGMMLGLENQEILDLLDDDELFNNHFEDA 618
Query: 287 VAVLQAHQAKQAAV 300
+ + ++ +A V
Sbjct: 619 LTAYEEYKKSEAGV 632
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+DG+SKGFGFV + + A +AV +N + I + +YV AQ+K +R L QY R
Sbjct: 276 DQDGKSKGFGFVNYEEHKSAVEAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIR 335
Query: 61 IANMRMQQMGQLF 73
+ + Q LF
Sbjct: 336 LEKLSKYQGVNLF 348
>gi|169853086|ref|XP_001833224.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
gi|116505602|gb|EAU88497.1| polyadenylate-binding protein [Coprinopsis cinerea okayama7#130]
Length = 681
Score = 94.7 bits (234), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 48/76 (63%), Positives = 57/76 (75%), Gaps = 1/76 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+SKGFGFVCFSSP+EATKAV EMN ++IG+KPLYV+LAQR+E R+ L SQ QR
Sbjct: 367 DEKGQSKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQR- 425
Query: 62 ANMRMQQMGQLFQPGS 77
+RMQQ PGS
Sbjct: 426 NQIRMQQAAAAGLPGS 441
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 39/59 (66%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ E+G+SKGFGFV F + +EA KAV E+N + K L+V+ AQ+K +R+ L Y Q
Sbjct: 263 VDEEGKSKGFGFVNFETHDEAQKAVDELNDFELKGKKLFVSRAQKKAEREEELRRSYEQ 321
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E GRSKG+GFV + + E A A+ +NG ++ K +YV +++R++ L Q
Sbjct: 171 DETGRSKGYGFVHYETAEAAENAIKAVNGMLLNDKKVYVGHHISRKERQSKLEEMRAQ-F 229
Query: 62 ANMRMQQM 69
N+ ++ +
Sbjct: 230 TNLYVKNL 237
>gi|159164023|pdb|2D9P|A Chain A, Solution Structure Of Rna Binding Domain 4 In
Polyadenylation Binding Protein 3
Length = 103
Score = 94.4 bits (233), Expect = 5e-17, Method: Compositional matrix adjust.
Identities = 43/51 (84%), Positives = 48/51 (94%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R++
Sbjct: 48 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQS 98
>gi|397598180|gb|EJK57169.1| hypothetical protein THAOC_22818 [Thalassiosira oceanica]
Length = 165
Score = 94.0 bits (232), Expect = 7e-17, Method: Compositional matrix adjust.
Identities = 46/79 (58%), Positives = 61/79 (77%)
Query: 217 GQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHN 276
E LT LA+A P+ QK M+GERL+PLI + P+LAGKITGMLLE+DN+ELL++LE
Sbjct: 26 ANEQLTPAALASATPEIQKNMIGERLYPLIHQTQPDLAGKITGMLLEMDNSELLHLLESP 85
Query: 277 ESLKSKVEEAVAVLQAHQA 295
E+L +K++EA+ VL AH A
Sbjct: 86 EALGAKIQEALQVLDAHNA 104
>gi|392595814|gb|EIW85137.1| polyadenylate binding protein [Coniophora puteana RWD-64-598 SS2]
Length = 683
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 47/76 (61%), Positives = 56/76 (73%), Gaps = 1/76 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFSSP+EATKA+ EMN ++IGSKPLYV+LAQR+E R+ L SQ QR
Sbjct: 363 DEKGSSKGFGFVCFSSPDEATKAIAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQR- 421
Query: 62 ANMRMQQMGQLFQPGS 77
+RMQQ PG+
Sbjct: 422 NQIRMQQAAAAGIPGA 437
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 36/59 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ ++GRSKGFGFV + S EEA AV ++ + K LYV AQ+K +R+ L Y Q
Sbjct: 259 VDDEGRSKGFGFVNYESHEEAQAAVDNLHDTDLKGKKLYVTRAQKKAEREEELRRSYEQ 317
Score = 42.7 bits (99), Expect = 0.19, Method: Compositional matrix adjust.
Identities = 21/68 (30%), Positives = 38/68 (55%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E GRSKG+GFV + + E A A+ +NG ++ K +YV +++R++ L Q
Sbjct: 167 DEQGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGPHIPRKERQSKLDEMKAQ-F 225
Query: 62 ANMRMQQM 69
N+ ++ +
Sbjct: 226 TNLYIKNL 233
>gi|389748929|gb|EIM90106.1| polyadenylate binding protein [Stereum hirsutum FP-91666 SS1]
Length = 682
Score = 94.0 bits (232), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 68/151 (45%), Positives = 83/151 (54%), Gaps = 22/151 (14%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G SKGFGFVCFSSP+EATKAV EMN ++IGSKPLYV+LAQR+E R+ L SQ QR
Sbjct: 372 DDKGTSKGFGFVCFSSPDEATKAVAEMNNKMIGSKPLYVSLAQRREVRRQQLESQIAQR- 430
Query: 62 ANMRMQQMGQLFQPGSTGGYF----------VPTLPQPQR-FYGPTQMTQIRPQPRWAAA 110
+RMQQ G GGY PQ R G Q + P+PR+A
Sbjct: 431 NQIRMQQAA---AAGLPGGYINGPMYYPPGPGAYPPQAGRGMMGYGQPGMLPPRPRYAPN 487
Query: 111 PQM------RPSGQTAQGFPNIPQF-RSAPR 134
Q+ P GQ QG+ +P + R PR
Sbjct: 488 QQVPGMPVPSPYGQPPQGYGGMPGYPRGGPR 518
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E+G+SKGFGFV F + E+A KAV ++ K L+V+ AQ+K +R+ L Y
Sbjct: 269 DEEGKSKGFGFVNFENHEQAAKAVDTLHDTDFNGKKLFVSRAQKKAEREEELRKSY 324
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/80 (27%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E GRS+G+G+V + + E A A+ +NG ++ K +YV +++R +AH
Sbjct: 176 DEQGRSRGYGYVHYETAEAAESAIKAVNGMLLNDKKVYVGYHISRKERQSKLEEMRAHFT 235
Query: 55 SQYMQRIA-NMRMQQMGQLF 73
+ Y++ + + Q +LF
Sbjct: 236 NLYVKNLDLEVTQDQFVELF 255
>gi|302683360|ref|XP_003031361.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
gi|300105053|gb|EFI96458.1| hypothetical protein SCHCODRAFT_257452 [Schizophyllum commune H4-8]
Length = 624
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/68 (66%), Positives = 55/68 (80%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+SKGFGFVC+S+P+EATKAV EMN ++IGSKPLYV+LAQRKE R+ L SQ QR
Sbjct: 360 DERGKSKGFGFVCYSAPDEATKAVAEMNNKMIGSKPLYVSLAQRKEIRRQQLESQIAQR- 418
Query: 62 ANMRMQQM 69
+RMQQ+
Sbjct: 419 QQLRMQQV 426
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ GR+ GFGFV F + EEA KAV ++ + LYVA AQ+K +R+A L QY Q
Sbjct: 257 DDQGRNLGFGFVNFETHEEAQKAVDALHESDFHGRKLYVARAQKKAEREAELRKQYDQ 314
Score = 44.7 bits (104), Expect = 0.057, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA-LAQRKE------DRKAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K +YV RKE + +AH
Sbjct: 164 DEHGNSKGYGFVHYETAEAAENAIKSVNGMLLNDKKVYVGPHISRKERQSKIDEMRAHFT 223
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 224 NLYVKNI 230
>gi|196013113|ref|XP_002116418.1| hypothetical protein TRIADDRAFT_30761 [Trichoplax adhaerens]
gi|190581009|gb|EDV21088.1| hypothetical protein TRIADDRAFT_30761, partial [Trichoplax
adhaerens]
Length = 102
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 42/61 (68%), Positives = 49/61 (80%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
E G SKGFGFVCF++ EEA+KA+ EM+GRII SKPLYV AQRKE+RKA LASQY R
Sbjct: 40 CDEKGASKGFGFVCFATQEEASKAINEMSGRIIVSKPLYVTFAQRKEERKAFLASQYNHR 99
Query: 61 I 61
+
Sbjct: 100 V 100
>gi|452843390|gb|EME45325.1| hypothetical protein DOTSEDRAFT_71152 [Dothistroma septosporum
NZE10]
Length = 785
Score = 93.2 bits (230), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 51/92 (55%), Positives = 60/92 (65%), Gaps = 8/92 (8%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EATKAVTE+N ++I KPLYVALAQRKE RK+ L + R +
Sbjct: 439 GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLEASIQAR-NQV 497
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPT 96
RMQQ G G P QPQ F GP
Sbjct: 498 RMQQQG-------PAGAIPPQFMQPQMFMGPN 522
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV + E+A KAV E+N + LYV AQ+K +R+ L QY
Sbjct: 271 DQEGKSRGFGFVNYIRHEDANKAVEELNNSDFKGQALYVGRAQKKHEREEELRKQY 326
Score = 43.9 bits (102), Expect = 0.090, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 178 DEHGNSKGYGFVHYETAEAANSAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFT 237
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 238 NIYVKNI 244
>gi|219130188|ref|XP_002185253.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
gi|217403432|gb|EEC43385.1| predicted protein [Phaeodactylum tricornutum CCAP 1055/1]
Length = 605
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 56/67 (83%)
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P+ QK M+GERL+PLI + PELAGKITGMLLE+DN+ELL++LE ++L SK+ EA+ VL
Sbjct: 538 PEVQKNMIGERLYPLIHQSQPELAGKITGMLLEMDNSELLHLLESPDALNSKISEALQVL 597
Query: 291 QAHQAKQ 297
+AHQA Q
Sbjct: 598 EAHQAGQ 604
>gi|158563873|sp|Q5B630.2|PABP_EMENI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|259481418|tpe|CBF74916.1| TPA: Polyadenylate-binding protein, cytoplasmic and nuclear
(Poly(A)-binding protein)(PABP)(Polyadenylate
tail-binding protein)
[Source:UniProtKB/Swiss-Prot;Acc:Q5B630] [Aspergillus
nidulans FGSC A4]
Length = 732
Score = 92.8 bits (229), Expect = 1e-16, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 61/78 (78%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT+ L+AA PQ+QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE +E+L+
Sbjct: 633 LTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALR 692
Query: 281 SKVEEAVAVLQAHQAKQA 298
+KV+EA++V + ++
Sbjct: 693 AKVDEALSVYDEYMKNKS 710
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+S+GFGFV FS+ E A AV EMN + + S+ LYV AQ+K +R+ L QY
Sbjct: 259 EGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQY 312
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 164 DEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 223
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I + ++ +LF+
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFE 244
>gi|398404546|ref|XP_003853739.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
gi|339473622|gb|EGP88715.1| hypothetical protein MYCGRDRAFT_56466 [Zymoseptoria tritici IPO323]
Length = 763
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 50/92 (54%), Positives = 61/92 (66%), Gaps = 8/92 (8%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EATKAVTE+N +++ KPLYVALAQRKE RK+ L + R +
Sbjct: 426 GKSKGFGFVCFSNPDEATKAVTELNQKMVHGKPLYVALAQRKEVRKSQLEASIQAR-NQV 484
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPT 96
RMQQ +T G P QPQ F GP
Sbjct: 485 RMQQQ-------ATAGGIPPQFMQPQMFMGPN 509
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+++GFGFV + E+A KAV E+N + LYV AQ+K +R+ L QY
Sbjct: 269 NESGKNRGFGFVNYIRHEDAYKAVEELNDSDFKGQKLYVGRAQKKHEREEELRKQY 324
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+ SKG+GFV + + E A +A+ +NG ++ K ++V K+DR KA+
Sbjct: 175 DENANSKGYGFVHYETAEAANQAIKNVNGMLLNEKKVFVGHHIPKKDRMSKVEEMKANFT 234
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 235 NIYVKNI 241
>gi|452820609|gb|EME27649.1| poly(A) binding / translation initiation factor [Galdieria
sulphuraria]
Length = 784
Score = 92.8 bits (229), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 59/73 (80%)
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
+L A P++QKQ+LGERL+PLI P LAGKITGMLLE+DN+E+L+++E ++L K+E
Sbjct: 701 LLTNASPEQQKQILGERLYPLIYERQPGLAGKITGMLLEMDNSEVLHLIESPDALSEKIE 760
Query: 285 EAVAVLQAHQAKQ 297
EA+AVL+AH +Q
Sbjct: 761 EALAVLRAHAEQQ 773
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 48/83 (57%), Positives = 57/83 (68%), Gaps = 7/83 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G S+GFGFVCFS+PEEATKAVTEMNG+++G KPLYV LAQRKE R+A L + QRI
Sbjct: 397 DDKGVSRGFGFVCFSTPEEATKAVTEMNGKMMGKKPLYVCLAQRKEIRQAQLEA---QRI 453
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP 84
A G L PG+ G P
Sbjct: 454 A----AAAGGLRIPGAVPGSLYP 472
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/53 (50%), Positives = 34/53 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
+ E+ KGF FV F+ PE A KAV E+NGR K LYV AQ+K +R+A L
Sbjct: 293 VDENEVPKGFAFVNFAKPECAAKAVEELNGRDFEGKSLYVGRAQKKAEREAEL 345
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 34/50 (68%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
++G S G+GFV F +PE+A A+ ++NG ++ K +YV + +++R+A
Sbjct: 202 DDEGNSLGYGFVHFENPEDAETAINKVNGMLLNDKQVYVGYFKSRQEREA 251
>gi|256271306|gb|EEU06376.1| Pab1p [Saccharomyces cerevisiae JAY291]
Length = 577
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 80/138 (57%), Gaps = 19/138 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 356 TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 414
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG---PTQMTQIRPQPRWAAAPQMRP- 115
MR QQ + G G F+P + FYG P + P P+ QM P
Sbjct: 415 NQMRYQQATAAAAAAAAGMPGQFMPPM-----FYGVMPPRGVPFNGPNPQ-----QMNPM 464
Query: 116 SGQTAQGFPNIPQFRSAP 133
G G P PQFR+ P
Sbjct: 465 GGMPKNGMP--PQFRNGP 480
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
DG+ KGFGFV + E+A KAV +N + + LYV AQ+K +R L QY R+
Sbjct: 255 DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLE 314
Query: 63 NMRMQQMGQLF 73
M Q LF
Sbjct: 315 KMAKYQGVNLF 325
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRKEDR-----KAHLA 54
E+G+SKGFGFV F A +A+ +NG ++ + +YVA L++++ D KAH
Sbjct: 160 DENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT 219
Query: 55 SQYMQRI-ANMRMQQMGQLF 73
+ Y++ I + +Q +LF
Sbjct: 220 NLYVKNINSETTDEQFQELF 239
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 25/68 (36%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE+L+ + + E AGKITGM+L++ E+L +LE +E + +EA A
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVLPLLESDELFEQHYKEASAA 562
Query: 290 LQAHQAKQ 297
++ + +Q
Sbjct: 563 YESFKKEQ 570
>gi|349577826|dbj|GAA22994.1| K7_Pab1p [Saccharomyces cerevisiae Kyokai no. 7]
Length = 577
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 80/138 (57%), Gaps = 19/138 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 356 TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 414
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG---PTQMTQIRPQPRWAAAPQMRP- 115
MR QQ + G G F+P + FYG P + P P+ QM P
Sbjct: 415 NQMRYQQATAAAAAAAAGMPGQFMPPM-----FYGVMPPRGVPFNGPNPQ-----QMNPM 464
Query: 116 SGQTAQGFPNIPQFRSAP 133
G G P PQFR+ P
Sbjct: 465 GGMPKNGMP--PQFRNGP 480
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
DG+ KGFGFV + E+A KAV +N + + LYV AQ+K +R L QY R+
Sbjct: 255 DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLE 314
Query: 63 NMRMQQMGQLF 73
M Q LF
Sbjct: 315 KMAKYQGVNLF 325
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRKEDR-----KAHLA 54
E+G+SKGFGFV F A +A+ +NG ++ + +YVA L++++ D KAH
Sbjct: 160 DENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT 219
Query: 55 SQYMQRI-ANMRMQQMGQLF 73
+ Y++ I + +Q +LF
Sbjct: 220 NLYVKNINSETTDEQFQELF 239
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE+L+ + + E AGKITGM+L++ E+ +LE +E + +EA A
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 290 LQAHQAKQ 297
++ + +Q
Sbjct: 563 YESFKKEQ 570
>gi|172092|gb|AAA34838.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
Length = 577
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 80/138 (57%), Gaps = 19/138 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 356 TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 414
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG---PTQMTQIRPQPRWAAAPQMRP- 115
MR QQ + G G F+P + FYG P + P P+ QM P
Sbjct: 415 NQMRYQQATAARAAAAAGMPGQFMPPM-----FYGVMPPRGVPFNGPNPQ-----QMNPM 464
Query: 116 SGQTAQGFPNIPQFRSAP 133
G G P PQFR+ P
Sbjct: 465 GGMPKNGMP--PQFRNGP 480
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
DG+ KGFGFV + E+A KAV +N + + LYV AQ+K +R L QY R+
Sbjct: 255 DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLE 314
Query: 63 NMRMQQMGQLF 73
M Q LF
Sbjct: 315 KMAKYQGVNLF 325
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRKEDR-----KAHLA 54
E+G+SKGFGFV F A +A+ +NG ++ + +YVA L++++ D KAH
Sbjct: 160 DENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT 219
Query: 55 SQYMQRI-ANMRMQQMGQLF 73
+ Y++ I + +Q +LF
Sbjct: 220 NLYVKNINSETTDEQFQELF 239
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE+L+ + + E AGKITGM+L++ E+ +LE +E + +EA A
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 290 LQAHQAKQ 297
++ + +Q
Sbjct: 563 YESFKKEQ 570
>gi|6321013|ref|NP_011092.1| Pab1p [Saccharomyces cerevisiae S288c]
gi|417441|sp|P04147.4|PABP_YEAST RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=ARS consensus-binding protein ACBP-67;
AltName: Full=Polyadenylate tail-binding protein
gi|171967|gb|AAA34787.1| poly (A)-binding protein [Saccharomyces cerevisiae]
gi|218386|dbj|BAA00017.1| polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|603406|gb|AAB64692.1| Pab1p: polyadenylate-binding protein [Saccharomyces cerevisiae]
gi|51013159|gb|AAT92873.1| YER165W [Saccharomyces cerevisiae]
gi|151944882|gb|EDN63141.1| poly(A) binding protein [Saccharomyces cerevisiae YJM789]
gi|207345803|gb|EDZ72507.1| YER165Wp-like protein [Saccharomyces cerevisiae AWRI1631]
gi|259146093|emb|CAY79353.1| Pab1p [Saccharomyces cerevisiae EC1118]
gi|285811799|tpg|DAA07827.1| TPA: Pab1p [Saccharomyces cerevisiae S288c]
gi|365765943|gb|EHN07446.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
gi|392299869|gb|EIW10961.1| Pab1p [Saccharomyces cerevisiae CEN.PK113-7D]
Length = 577
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 80/138 (57%), Gaps = 19/138 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 356 TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 414
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG---PTQMTQIRPQPRWAAAPQMRP- 115
MR QQ + G G F+P + FYG P + P P+ QM P
Sbjct: 415 NQMRYQQATAAAAAAAAGMPGQFMPPM-----FYGVMPPRGVPFNGPNPQ-----QMNPM 464
Query: 116 SGQTAQGFPNIPQFRSAP 133
G G P PQFR+ P
Sbjct: 465 GGMPKNGMP--PQFRNGP 480
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
DG+ KGFGFV + E+A KAV +N + + LYV AQ+K +R L QY R+
Sbjct: 255 DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLE 314
Query: 63 NMRMQQMGQLF 73
M Q LF
Sbjct: 315 KMAKYQGVNLF 325
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRKEDR-----KAHLA 54
E+G+SKGFGFV F A +A+ +NG ++ + +YVA L++++ D KAH
Sbjct: 160 DENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT 219
Query: 55 SQYMQRI-ANMRMQQMGQLF 73
+ Y++ I + +Q +LF
Sbjct: 220 NLYVKNINSETTDEQFQELF 239
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE+L+ + + E AGKITGM+L++ E+ +LE +E + +EA A
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 290 LQAHQAKQ 297
++ + +Q
Sbjct: 563 YESFKKEQ 570
>gi|307103841|gb|EFN52098.1| hypothetical protein CHLNCDRAFT_59028 [Chlorella variabilis]
Length = 634
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 40/58 (68%), Positives = 51/58 (87%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
G+S+GFGFVC++SPEEAT+AVTEMNGR+I KP+YVALAQR++ R+A L QY QR+A
Sbjct: 359 GKSRGFGFVCYASPEEATRAVTEMNGRMIKGKPIYVALAQRRDVRRAQLEQQYQQRVA 416
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 39/56 (69%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+SKGFGF+ F PE+A AV +NG+ + K LYV AQ+K +R+A L +++
Sbjct: 253 DDEGKSKGFGFINFEEPEQAASAVQALNGKDVNCKELYVGRAQKKAEREAMLRAKF 308
Score = 39.3 bits (90), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 28/48 (58%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH 52
G SKG+GFV F E A A+ ++NG ++ K +YV R+ +R +
Sbjct: 166 GESKGYGFVHFEKDESARLAIEKVNGMLLEGKKVYVGPFLRRSERSSD 213
>gi|23573608|gb|AAN38742.1| polyadenylate binding protein [Spodoptera frugiperda]
Length = 86
Score = 92.4 bits (228), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 45/50 (90%), Positives = 48/50 (96%)
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
AVH+QGQEPLTSTMLAAA QEQKQMLGERLFPLIQRM+P+LAGKITGML
Sbjct: 37 AVHIQGQEPLTSTMLAAAPLQEQKQMLGERLFPLIQRMHPDLAGKITGML 86
>gi|452984370|gb|EME84127.1| hypothetical protein MYCFIDRAFT_202901 [Pseudocercospora fijiensis
CIRAD86]
Length = 715
Score = 92.4 bits (228), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 61/126 (48%), Positives = 75/126 (59%), Gaps = 9/126 (7%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EATKAVTE+N ++I SKPLYVALAQRKE RK+ L + R +
Sbjct: 428 GKSKGFGFVCFSNPDEATKAVTELNQKMIHSKPLYVALAQRKEVRKSQLEASIQAR-NQV 486
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAA-APQMRPSGQTAQ-G 122
RMQQ + GG + PQ F GP + P R Q P GQ + G
Sbjct: 487 RMQQQ------ATAGGLPQQFMAPPQMFIGPNGQPMMIPGGRGQMPFVQGMPQGQGQRGG 540
Query: 123 FPNIPQ 128
FP +PQ
Sbjct: 541 FPGMPQ 546
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 33/56 (58%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ G+ +GFGFV F E+A KAV E+N + LYV AQ+K +R+ L QY
Sbjct: 270 DDQGKVRGFGFVNFIRHEDAAKAVDELNDLDFKGQKLYVGRAQKKHEREEELRKQY 325
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 44/82 (53%), Gaps = 8/82 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHL 53
+ E G SKG+GFV + + + A +A+ +NG ++ K ++V K+DR KA+
Sbjct: 176 VDEHGNSKGYGFVHYETSDAANQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANF 235
Query: 54 ASQYMQRI-ANMRMQQMGQLFQ 74
+ Y++ I A + +LF+
Sbjct: 236 TNIYVKNIDAETTDDEFRELFE 257
>gi|392558545|gb|EIW51732.1| polyadenylate binding protein [Trametes versicolor FP-101664 SS1]
Length = 631
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 49/81 (60%), Positives = 57/81 (70%), Gaps = 4/81 (4%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFSSP+EATKAV EMN ++IG+KPLYV+LAQR+E R+ L SQ QR
Sbjct: 325 DEKGISKGFGFVCFSSPDEATKAVAEMNNKMIGTKPLYVSLAQRREVRRQQLESQIAQR- 383
Query: 62 ANMRMQQMGQLFQPGSTGGYF 82
+RMQQ G GGY
Sbjct: 384 NQIRMQQAAAT---GIPGGYI 401
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/71 (35%), Positives = 43/71 (60%), Gaps = 4/71 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++G+S+GFGFV F + EEA AV ++ + + L+VA AQ+K +R+ L Y Q
Sbjct: 221 VDDEGKSRGFGFVNFDTHEEAHAAVEALHDSDVKGRKLFVARAQKKAEREEELRRSYEQ- 279
Query: 61 IANMRMQQMGQ 71
+M++M +
Sbjct: 280 ---AKMEKMSK 287
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E GRSKG+GFV + + E A A+ +NG ++ K +YV +++R K
Sbjct: 129 DEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGHHISRKERQSKIEEMKNQFT 188
Query: 55 SQYMQRIA-NMRMQQMGQLFQP 75
+ Y++ + + ++ QLF+P
Sbjct: 189 NIYVKNVDPEVTQEEFVQLFEP 210
>gi|323355343|gb|EGA87168.1| Pab1p [Saccharomyces cerevisiae VL3]
Length = 563
Score = 92.0 bits (227), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 80/138 (57%), Gaps = 19/138 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 356 TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 414
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG---PTQMTQIRPQPRWAAAPQMRP- 115
MR QQ + G G F+P + FYG P + P P+ QM P
Sbjct: 415 NQMRYQQATAAAAAAAAGMPGQFMPPM-----FYGVMPPRGVPFNGPNPQ-----QMNPM 464
Query: 116 SGQTAQGFPNIPQFRSAP 133
G G P PQFR+ P
Sbjct: 465 GGMPKNGMP--PQFRNGP 480
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
DG+ KGFGFV + E+A KAV +N + + LYV AQ+K +R L QY R+
Sbjct: 255 DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLE 314
Query: 63 NMRMQQMGQLF 73
M Q LF
Sbjct: 315 KMAKYQGVNLF 325
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRKEDR-----KAHLA 54
E+G+SKGFGFV F A +A+ +NG ++ + +YVA L++++ D KAH
Sbjct: 160 DENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT 219
Query: 55 SQYMQRI-ANMRMQQMGQLF 73
+ Y++ I + +Q +LF
Sbjct: 220 NLYVKNINSETTDEQFQELF 239
Score = 37.4 bits (85), Expect = 8.6, Method: Compositional matrix adjust.
Identities = 21/61 (34%), Positives = 36/61 (59%), Gaps = 2/61 (3%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE+L+ + + E AGKITGM+L++ E+ +LE +E + + +
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHXQRSFCC 562
Query: 290 L 290
L
Sbjct: 563 L 563
>gi|365760982|gb|EHN02660.1| Pab1p [Saccharomyces cerevisiae x Saccharomyces kudriavzevii VIN7]
Length = 466
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 80/138 (57%), Gaps = 19/138 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 245 TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 303
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG---PTQMTQIRPQPRWAAAPQMRP- 115
MR QQ + G G F+P + FYG P + P P+ QM P
Sbjct: 304 NQMRYQQATAAAAAAAAGMPGQFMPPM-----FYGVMPPRGVPFNGPNPQ-----QMNPM 353
Query: 116 SGQTAQGFPNIPQFRSAP 133
G G P PQFR+ P
Sbjct: 354 GGMPKNGMP--PQFRNGP 369
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
DG+ KGFGFV + + E+A KAV +N + + LYV AQ+K +R L QY R+
Sbjct: 144 DGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLE 203
Query: 63 NMRMQQMGQLF 73
M Q LF
Sbjct: 204 KMAKYQGVNLF 214
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRKEDR-----KAHLA 54
E+G+SKGFGFV F A +A+ +NG ++ + +YVA L++++ D KAH
Sbjct: 49 DENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT 108
Query: 55 SQYMQRI-ANMRMQQMGQLF 73
+ Y++ I + +Q LF
Sbjct: 109 NLYVKNINSETTDEQFQDLF 128
Score = 42.4 bits (98), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE+L+ + + E AGKITGM+L++ E+ +LE++E + +EA A
Sbjct: 392 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLENDELFEQHYKEASAA 451
Query: 290 LQAHQAKQ 297
++ + +Q
Sbjct: 452 YESFKKEQ 459
>gi|323305308|gb|EGA59055.1| Pab1p [Saccharomyces cerevisiae FostersB]
gi|323333819|gb|EGA75210.1| Pab1p [Saccharomyces cerevisiae AWRI796]
Length = 466
Score = 91.7 bits (226), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 81/138 (58%), Gaps = 19/138 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q +Q
Sbjct: 245 TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQ-IQAR 303
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG---PTQMTQIRPQPRWAAAPQMRP- 115
MR QQ + G G F+P + FYG P + P P+ QM P
Sbjct: 304 NQMRYQQATAAAAAAAAGMPGQFMPPM-----FYGVMPPRGVPFNGPNPQ-----QMNPM 353
Query: 116 SGQTAQGFPNIPQFRSAP 133
G G P PQFR+ P
Sbjct: 354 GGMPKNGMP--PQFRNGP 369
Score = 52.0 bits (123), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
DG+ KGFGFV + E+A KAV +N + + LYV AQ+K +R L QY R+
Sbjct: 144 DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLE 203
Query: 63 NMRMQQMGQLF 73
M Q LF
Sbjct: 204 KMAKYQGVNLF 214
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRKEDR-----KAHLA 54
E+G+SKGFGFV F A +A+ +NG ++ + +YVA L++++ D KAH
Sbjct: 49 DENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT 108
Query: 55 SQYMQRI-ANMRMQQMGQLF 73
+ Y++ I + +Q +LF
Sbjct: 109 NLYVKNINSETTDEQFQELF 128
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE+L+ + + E AGKITGM+L++ E+ +LE +E + +EA A
Sbjct: 392 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 451
Query: 290 LQAHQAKQ 297
++ + +Q
Sbjct: 452 YESFKKEQ 459
>gi|224012523|ref|XP_002294914.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
gi|220969353|gb|EED87694.1| polyadenlyte binding protein [Thalassiosira pseudonana CCMP1335]
Length = 612
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 44/73 (60%), Positives = 58/73 (79%)
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
E LT LA+A P+ QK M+GERL+PLI + PELAGKITGMLLE+DN+ELL++LE E
Sbjct: 540 NEQLTPAALASASPEVQKNMIGERLYPLIHQTQPELAGKITGMLLEMDNSELLHLLESPE 599
Query: 278 SLKSKVEEAVAVL 290
+L +K++EA+ VL
Sbjct: 600 ALNAKIQEALQVL 612
Score = 37.7 bits (86), Expect = 6.0, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 37/70 (52%), Gaps = 12/70 (17%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIG--------SKPLYVALAQRKEDRKAHLASQY- 57
S GFGFV F++ E A AV EMN + +K L+V AQ+K +R+ L ++Y
Sbjct: 223 SLGFGFVNFATHEAAAAAVKEMNDKEFTVTEDGEEVTKVLFVGRAQKKAERERELRAKYE 282
Query: 58 ---MQRIANM 64
+ RIA
Sbjct: 283 AEKIDRIAKF 292
>gi|403216743|emb|CCK71239.1| hypothetical protein KNAG_0G01810 [Kazachstania naganishii CBS
8797]
Length = 596
Score = 91.7 bits (226), Expect = 4e-16, Method: Compositional matrix adjust.
Identities = 59/134 (44%), Positives = 73/134 (54%), Gaps = 22/134 (16%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFSSPEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 365 TENGKSKGFGFVCFSSPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 423
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYG-------------PTQMTQIRPQ---- 104
MR QQ + G +P P FYG P QM + PQ
Sbjct: 424 NQMRYQQATAAAAAAAAG---IPGQFMPPMFYGVMPPRGVPFNGPNPQQMNGVPPQQFRN 480
Query: 105 -PRWAAAPQMRPSG 117
P + PQ P G
Sbjct: 481 GPMYGMPPQGAPQG 494
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RIA 62
DG+ KGFGFV + +A KAV E+NG + L+V AQ+K +R L QY R+
Sbjct: 264 DGKLKGFGFVNYEDHNDAVKAVEELNGAEFKDQELFVGRAQKKYERIQSLKKQYESTRLE 323
Query: 63 NMRMQQMGQLF 73
M Q LF
Sbjct: 324 KMAKYQGVNLF 334
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRKEDR-----KAHLA 54
E G+SKGFGFV F A +A+ +NG ++ + +YVA L +++ D KAH
Sbjct: 169 DETGKSKGFGFVHFEEESAANEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFT 228
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 229 NVYVKNI 235
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE+L+ I + E AGKITGM+L++ E++ +LE+++ + EA A
Sbjct: 510 QKQRQALGEQLYKKISAKTSDEEAAGKITGMILDLPPQEVVSLLENDDLFEQHFTEASAA 569
Query: 290 LQAHQ 294
++ +
Sbjct: 570 YESFK 574
>gi|443926079|gb|ELU44821.1| polyadenylate-binding protein [Rhizoctonia solani AG-1 IA]
Length = 593
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 44/67 (65%), Positives = 54/67 (80%), Gaps = 1/67 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E SKGFGFVCFS+P+EATKAVTEMN ++IG+KPLYV+LAQR++ R+ L Q MQR
Sbjct: 471 NERDISKGFGFVCFSTPDEATKAVTEMNNKMIGTKPLYVSLAQRRDVRRQQLEGQIMQR- 529
Query: 62 ANMRMQQ 68
MRMQQ
Sbjct: 530 NQMRMQQ 536
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+S+GFGFV + + EEA +AV EM+ + I K L+V AQ+K +R++ LA +
Sbjct: 368 DNEGKSRGFGFVNYENHEEAERAVNEMHEKEIKGKVLFVGRAQKKSERQSELARSH 423
>gi|296424906|ref|XP_002841986.1| hypothetical protein [Tuber melanosporum Mel28]
gi|295638240|emb|CAZ86177.1| unnamed protein product [Tuber melanosporum]
Length = 335
Score = 91.3 bits (225), Expect = 5e-16, Method: Compositional matrix adjust.
Identities = 51/102 (50%), Positives = 68/102 (66%), Gaps = 8/102 (7%)
Query: 192 PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYP 251
P TQP G PA + V G +P T+ AA+ PQ QKQ+LGE L+P IQR +P
Sbjct: 207 PQTQP-----GRPPAPPQIPHVSTSGIDP---TLFAASPPQAQKQLLGESLYPKIQRQHP 258
Query: 252 ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
ELAGKITGMLLE+DN ELL +L+ ++L +KV+EA++V +
Sbjct: 259 ELAGKITGMLLEMDNMELLALLDDEQALIAKVDEALSVYDEY 300
>gi|237833723|ref|XP_002366159.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
gi|211963823|gb|EEA99018.1| polyadenylate-binding protein, putative [Toxoplasma gondii ME49]
Length = 768
Score = 90.5 bits (223), Expect = 9e-16, Method: Compositional matrix adjust.
Identities = 44/62 (70%), Positives = 51/62 (82%)
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
QP QKQMLGE+LFPLI R PELAGKITGM+LE+DNAELL +LE LK+KV+EA+ V
Sbjct: 704 QPSMQKQMLGEKLFPLIARYQPELAGKITGMMLEMDNAELLILLESEAQLKAKVDEALRV 763
Query: 290 LQ 291
LQ
Sbjct: 764 LQ 765
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ- 59
+ ++G SKG+GFV + + E A A+ ++NG +IG K +YV R+ +R ++Y
Sbjct: 204 VDDNGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFIRRAERDNLAEAKYTNV 263
Query: 60 RIANM 64
I NM
Sbjct: 264 YIKNM 268
>gi|367008356|ref|XP_003678678.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
gi|359746335|emb|CCE89467.1| hypothetical protein TDEL_0A01350 [Torulaspora delbrueckii]
Length = 588
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 50/95 (52%), Positives = 64/95 (67%), Gaps = 8/95 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
SE+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 360 SENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 418
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG 94
MR QQ+ + G G F+P + FYG
Sbjct: 419 NQMRYQQVTAAAAAAAAGMRGQFMPPM-----FYG 448
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G S+GFGFV F E A +A+ +NG ++ + +YVA K+DR KA+
Sbjct: 164 DEAGNSRGFGFVHFEDDEAAKEAIDAINGMLLNGQEVYVAQHVSKKDRQSKLDEAKANFT 223
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 224 NVYVKNI 230
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 25/73 (34%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+G+ +GFGFV + + +A KAV E+N + L+V AQ+K +R L QY R
Sbjct: 257 DNEGKLRGFGFVNYENHNDAAKAVEELNETDFKGQTLHVGRAQKKHERLQELKKQYEAFR 316
Query: 61 IANMRMQQMGQLF 73
+ + Q LF
Sbjct: 317 LEKLEKYQGVNLF 329
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q+LGE+L+ + + E AGKITGM+L++ + E++ +LE +E +EA A
Sbjct: 513 QKQRQVLGEQLYKKVFAKTSDEEAAGKITGMILDLPSQEVVPLLESDELFDQHFKEAFAA 572
Query: 290 LQAHQ 294
++ +
Sbjct: 573 YESFK 577
>gi|358058232|dbj|GAA95909.1| hypothetical protein E5Q_02567 [Mixia osmundae IAM 14324]
Length = 614
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 44/68 (64%), Positives = 53/68 (77%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFSSP+EATKAVTE+NG++ G KPLYV+LAQRK+ RK L +Q QR
Sbjct: 297 DEKGASKGFGFVCFSSPDEATKAVTELNGKMFGQKPLYVSLAQRKDVRKQQLEAQLAQR- 355
Query: 62 ANMRMQQM 69
+R QQ+
Sbjct: 356 NQIRSQQL 363
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 43/70 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +DG+SKGFGFV F+ E A KA+TE++ + LYV+ AQ+K +R+ L Y Q+
Sbjct: 193 VDQDGKSKGFGFVNFADHEAAAKALTELHDSEHKGQTLYVSRAQKKGEREEELKKSYEQQ 252
Query: 61 IANMRMQQMG 70
+ ++ G
Sbjct: 253 KYDKSLKYQG 262
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 31/53 (58%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
+ E+G SKG+GFV + E A A+ +NG ++ K +YV + +R+A +
Sbjct: 100 LDENGLSKGYGFVHYEGGEAAEAAIQAVNGMLLNDKVVYVGHHVPRRERQAKI 152
>gi|401625965|gb|EJS43937.1| pab1p [Saccharomyces arboricola H-6]
Length = 577
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 80/138 (57%), Gaps = 19/138 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
SE+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 356 SENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 414
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG---PTQMTQIRPQPRWAAAPQMRP- 115
MR QQ + G G F+P + FYG P + P P+ Q+ P
Sbjct: 415 NQMRYQQATAAAAAAAAGMPGQFMPPM-----FYGVMPPRGVPFNGPNPQ-----QINPM 464
Query: 116 SGQTAQGFPNIPQFRSAP 133
G G P PQF +AP
Sbjct: 465 GGMPKNGMP--PQFGNAP 480
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
DG+ KGFGFV + + E+A KAV +N + + LYV AQ+K +R L QY R+
Sbjct: 255 DGKLKGFGFVNYENHEDAVKAVEALNESDLNGEKLYVGRAQKKNERMHVLKKQYEAYRLE 314
Query: 63 NMRMQQMGQLF 73
M Q LF
Sbjct: 315 KMAKYQGVNLF 325
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 47/85 (55%), Gaps = 11/85 (12%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRKEDR-----KAHLA 54
E+G+SKGFGFV F A +A+ +NG ++ + +YVA L++++ D KAH
Sbjct: 160 DENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT 219
Query: 55 SQYMQRI----ANMRMQQMGQLFQP 75
+ Y++ I + + Q+M F P
Sbjct: 220 NLYVKNINSETTDEKFQEMFAQFGP 244
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 43/68 (63%), Gaps = 2/68 (2%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE+L+ + + E AGKITGM+L++ E+ +LE++E + +EA A
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLENDELFEQHYKEASAA 562
Query: 290 LQAHQAKQ 297
++ + +Q
Sbjct: 563 YESFKKEQ 570
>gi|328852276|gb|EGG01423.1| hypothetical protein MELLADRAFT_39080 [Melampsora larici-populina
98AG31]
Length = 701
Score = 90.1 bits (222), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 45/77 (58%), Positives = 55/77 (71%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
L+ LA A P EQKQMLGE L+P I PE AGKITGM+LEIDNAELL++LE+ +L
Sbjct: 620 LSPAALAKASPAEQKQMLGEALYPQIAEKQPEKAGKITGMILEIDNAELLHLLENTTALD 679
Query: 281 SKVEEAVAVLQAHQAKQ 297
+KV EAV VL ++ K
Sbjct: 680 AKVSEAVQVLDEYERKD 696
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 23/69 (33%), Positives = 38/69 (55%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+ +GFGFV + + E A+KAV ++ + LYVA AQ++ +R A L + Q+
Sbjct: 272 DESGKHRGFGFVNYENHESASKAVEALHDKDYKGNILYVARAQKRVERDAELRRAHEQQK 331
Query: 62 ANMRMQQMG 70
++ G
Sbjct: 332 YETTLKYQG 340
Score = 40.4 bits (93), Expect = 1.0, Method: Compositional matrix adjust.
Identities = 20/81 (24%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHL 53
M G SKG+GFV + + E A A+ +NG + K ++V + + +R +AH
Sbjct: 178 MDSTGASKGYGFVHYVTAESAEAAIKGVNGMQLNDKVVFVGIHVPRRERQAKIDEVRAHF 237
Query: 54 ASQYMQRI-ANMRMQQMGQLF 73
+ Y++ + + +++ ++F
Sbjct: 238 TNLYIKNLPTEVTTEELNEMF 258
>gi|384486188|gb|EIE78368.1| hypothetical protein RO3G_03072 [Rhizopus delemar RA 99-880]
Length = 499
Score = 89.7 bits (221), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 47/80 (58%), Positives = 57/80 (71%), Gaps = 9/80 (11%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
S+GFGFVCF+SPE+AT+AVTEMNGRIIGSKP+YVA+AQRKE R++ L Q QR
Sbjct: 352 SRGFGFVCFTSPEDATRAVTEMNGRIIGSKPIYVAIAQRKEVRRSQLEIQMAQR------ 405
Query: 67 QQMGQLFQPGSTGGYFVPTL 86
Q+ Q P S F PT+
Sbjct: 406 NQLKQAMMPPSV---FPPTM 422
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+DG SKGFGFV F ++A AV +++ + + LYV+ AQ+K +R+ L QY
Sbjct: 243 DDDGTSKGFGFVNFEKHQDAQNAVDDLHKKDFRGQDLYVSRAQKKNEREEELRRQY 298
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/80 (26%), Positives = 43/80 (53%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ----- 56
E G SKG+GFV + + E A A+ +NG ++ + ++V +++R++ L
Sbjct: 150 DEQGNSKGYGFVHYETLEAAESAIKSVNGMLLNDRKVFVGHHISRKERESKLGESRVQFT 209
Query: 57 --YMQRI-ANMRMQQMGQLF 73
Y++ I ++ +++ QLF
Sbjct: 210 NIYVKNIPFDVTDEELSQLF 229
>gi|449016981|dbj|BAM80383.1| polyadenylate-binding protein [Cyanidioschyzon merolae strain 10D]
Length = 999
Score = 89.7 bits (221), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/94 (51%), Positives = 65/94 (69%), Gaps = 5/94 (5%)
Query: 207 AAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYP-----ELAGKITGML 261
A G + +PLT MLA A P++QKQ+LGERL+PL+ + ELA KITGML
Sbjct: 880 AMGNMMIGSAASQPLTVQMLANADPKQQKQILGERLYPLVYQQLVREGKRELAPKITGML 939
Query: 262 LEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295
LE+DN+E+L+++E E+L+ KVEEA+ VLQ H A
Sbjct: 940 LEMDNSEVLHLVESPEALQEKVEEALEVLQQHLA 973
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 58/93 (62%), Gaps = 7/93 (7%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFV FS P+EA KAVTEMN RI+G KP+YVALAQRK+ R+A + + QR
Sbjct: 566 DEKGVSKGFGFVAFSHPDEAIKAVTEMNQRIVGQKPIYVALAQRKDQRRAQIEA---QRA 622
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP--TLPQPQRF 92
A MR Q PG +VP +P P +
Sbjct: 623 AMMRAQM--SFLPPGLAASMYVPGTGMPTPSGY 653
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/64 (45%), Positives = 43/64 (67%), Gaps = 1/64 (1%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMR 65
R +GF FV F +PE+A AV +NG + K LYV AQ+K +R+A L +Q M+++ N R
Sbjct: 467 RPRGFAFVNFETPEQAAAAVEALNGMELNGKTLYVGRAQKKAEREAMLRAQ-MEQLRNDR 525
Query: 66 MQQM 69
MQ++
Sbjct: 526 MQKL 529
>gi|7689377|gb|AAF67755.1|AF255335_1 poly(A)-binding protein [Spisula solidissima]
Length = 286
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 41/45 (91%), Positives = 43/45 (95%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M+E GRSKGFGFVCFSSPEEATKAVTEMNGRII +KPLYVALAQR
Sbjct: 242 MTEGGRSKGFGFVCFSSPEEATKAVTEMNGRIIVAKPLYVALAQR 286
Score = 61.2 bits (147), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 29/65 (44%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
DG+ +GFGFV + PE A KAVTEMN + K LYV AQ++ +R+A L ++ R+
Sbjct: 143 DGKGRGFGFVSYEEPEAAEKAVTEMNNKTFEEKTLYVGRAQKRAERQAELKDKF-DRLKQ 201
Query: 64 MRMQQ 68
RM +
Sbjct: 202 ERMNR 206
Score = 38.1 bits (87), Expect = 4.9, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+S++ S+G+GFV F + E A A+ ++NG ++ K ++V + +R + + M++
Sbjct: 47 VSDEHGSRGYGFVHFETEEAARNAIEKVNGMLLNGKKVFVGRFMNRRERLEQMGDK-MKK 105
Query: 61 IANMRMQQMGQ 71
N+ ++ +
Sbjct: 106 FNNVYIKNFSE 116
>gi|254578926|ref|XP_002495449.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
gi|238938339|emb|CAR26516.1| ZYRO0B11660p [Zygosaccharomyces rouxii]
Length = 587
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/95 (51%), Positives = 64/95 (67%), Gaps = 8/95 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 359 TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 417
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG 94
MR QQ+ + G G F+P + FYG
Sbjct: 418 NQMRYQQVTAAAAAAAAGMRGQFMPPM-----FYG 447
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 7/65 (10%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLASQY 57
G SKGFGFV F S E A +A+ +NG ++ + +YVA ++DR KA+ + Y
Sbjct: 166 GNSKGFGFVHFESDEAAREAIDAINGMLLNGQEVYVAPHVSRKDRQSKLEEAKANFTNVY 225
Query: 58 MQRIA 62
++ I+
Sbjct: 226 IKNIS 230
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RIA 62
+G+ +GFGFV + + A KAV E+NG + L+V AQ+K +R+ L QY Q ++
Sbjct: 258 EGKLRGFGFVNYETHAGAAKAVEELNGVEFHGQQLHVGRAQKKYERQQELRRQYEQSKLE 317
Query: 63 NMRMQQMGQLF 73
M Q LF
Sbjct: 318 KMEKYQGVNLF 328
Score = 44.7 bits (104), Expect = 0.050, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q+LGE+L+ + + E AGKITGM+L++ + E++ +LE +E + +EA A
Sbjct: 512 QKQRQLLGEQLYKKVFARTSDEEAAGKITGMILDLPSQEVVPLLESDELFEQHFKEAFAA 571
Query: 290 LQAHQAKQ 297
+ + +Q
Sbjct: 572 YETFKQEQ 579
>gi|365985359|ref|XP_003669512.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
gi|343768280|emb|CCD24269.1| hypothetical protein NDAI_0C06100 [Naumovozyma dairenensis CBS 421]
Length = 585
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 61/133 (45%), Positives = 78/133 (58%), Gaps = 16/133 (12%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+S+GFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 358 TENGKSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 416
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
MR QQ + G +P P FYG + P PR P P+ Q
Sbjct: 417 NQMRYQQATAAAAAAAAG---IPGQFMPPMFYG------VMP-PR--GVPFNGPNPQQMN 464
Query: 122 GFPNIP-QFRSAP 133
G P P QFR+AP
Sbjct: 465 GVP--PQQFRNAP 475
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 43/73 (58%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQR 60
+EDG+ KGFGFV F + E+A KAV E+NG + L+V+ AQ+K +R L QY R
Sbjct: 255 TEDGKLKGFGFVDFENHEDAAKAVEELNGSQFKDQELFVSRAQKKYERMQELKKQYEASR 314
Query: 61 IANMRMQQMGQLF 73
+ M Q LF
Sbjct: 315 LEKMAKYQGVNLF 327
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 42/65 (64%), Gaps = 2/65 (3%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+++Q LGE+L+ + + + E AGKITGM+L++ +++ +LE++E +EA A
Sbjct: 499 QQKRQALGEQLYKKVSAKNVDEEAAGKITGMILDLPPQDVVSLLENDELFDQHFKEASAA 558
Query: 290 LQAHQ 294
Q+ +
Sbjct: 559 YQSFK 563
Score = 42.0 bits (97), Expect = 0.36, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRK-----EDRKAHLA 54
E G+SKGFGFV F A +A+ +NG ++ + ++V L++++ E+ KA+
Sbjct: 162 DETGKSKGFGFVHFEDDTAAKEAIDALNGMLLNGQEIFVGPHLSRKERDSQLEESKANFT 221
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 222 NIYVKNI 228
>gi|301764847|ref|XP_002917846.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ailuropoda melanoleuca]
Length = 492
Score = 89.4 bits (220), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 40/53 (75%), Positives = 46/53 (86%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
M E+GRSKGFG +CFSSPEEATKA+ EMNGRI+GSKPLY+ALAQR +RK L
Sbjct: 424 MREEGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQRPXERKNFL 476
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNG+ + + L+V AQ+K +R+A L + Q
Sbjct: 326 GKSKGFGFVSFDSHEAAKKAVEEMNGKDVNGQLLFVGRAQKKSERQAELKQMFEQ 380
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D S+G+ FV F + A +A+ EMNG ++ L+V + ++DR+A L ++ +
Sbjct: 229 MSDDQGSRGYAFVHFQNQNAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNK-VNE 287
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 288 FTNVYVKNFGD 298
>gi|449547299|gb|EMD38267.1| hypothetical protein CERSUDRAFT_113433 [Ceriporiopsis subvermispora
B]
Length = 679
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/82 (58%), Positives = 59/82 (71%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
L S+ +A A P EQKQMLGE L+ I PELAGKITGMLLEIDNAEL+ +LE +SL
Sbjct: 598 LGSSAMANASPMEQKQMLGEILYMKIAPSQPELAGKITGMLLEIDNAELIILLESPDSLN 657
Query: 281 SKVEEAVAVLQAHQAKQAAVKK 302
+KV+EA+AVL K+ VK+
Sbjct: 658 AKVQEALAVLHDFSQKETDVKQ 679
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 34/58 (58%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+GRSKGFGFV F EEA K V ++ + K L+V AQ+K +R+ L Y Q
Sbjct: 263 DEEGRSKGFGFVNFEKHEEAQKGVESLHDFELNGKKLFVTRAQKKAEREEELRKSYEQ 320
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 47/81 (58%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRK-----EDRKAHLA 54
E GRSKG+GFV + + E A A+ +NG ++ K +YV +++++ E+ KA
Sbjct: 170 DEHGRSKGYGFVHYETAEAADTAIKAVNGMLLNDKKVYVGPHISRKERQSKIEEMKAQFT 229
Query: 55 SQYMQRI-ANMRMQQMGQLFQ 74
+ Y++ I A + ++ QLF+
Sbjct: 230 NVYVKNIDAEVTDEEFRQLFE 250
>gi|320591142|gb|EFX03581.1| polyadenylate-binding protein [Grosmannia clavigera kw1407]
Length = 780
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 55/113 (48%), Positives = 67/113 (59%), Gaps = 17/113 (15%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P++ATKAVTEMN R++ KPLYVA+AQ+KE RK+ L + R +
Sbjct: 431 GKSKGFGFVCFSNPDDATKAVTEMNQRMVSGKPLYVAIAQKKEVRKSQLEASIQAR-NTL 489
Query: 65 RMQQMGQLFQPGSTGGYFVPTLP----QPQRFYGPTQMTQIRPQ-PRWAAAPQ 112
RMQQ V LP QPQ +Y P Q PQ R A PQ
Sbjct: 490 RMQQAAA-----------VAGLPQTYMQPQVYYPPGQQQAFLPQGGRGMAFPQ 531
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 36/55 (65%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+S+GFGF+ F++ E A KAV E+N R I + LYV AQ+K +R+ L Y
Sbjct: 276 ETGKSRGFGFINFTTHESAAKAVEELNSREIHGQELYVGRAQKKHEREEELRKSY 330
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 181 DEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANYT 240
Query: 55 SQYMQRI-ANMRMQQMGQLFQ 74
+ Y++ + A++ + +LF+
Sbjct: 241 NIYIKNLHADVTDDEFRKLFE 261
>gi|156837090|ref|XP_001642579.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
gi|156113126|gb|EDO14721.1| hypothetical protein Kpol_1075p1a [Vanderwaltozyma polyspora DSM
70294]
Length = 264
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 48/88 (54%), Positives = 57/88 (64%), Gaps = 11/88 (12%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+EDG+SK FGFVCFS+PEEAT+A+TE N +I+ KPLYVA+AQRKE R+A LA Q R
Sbjct: 55 TEDGKSKNFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKEVRRAQLAQQVQAR- 113
Query: 62 ANMRMQQM----------GQLFQPGSTG 79
MR QQ GQ QP G
Sbjct: 114 NQMRYQQATAAAAAAGIPGQFLQPMFYG 141
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 34/109 (31%), Positives = 54/109 (49%), Gaps = 10/109 (9%)
Query: 192 PGTQPQAQIGGIQP----AAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLI- 246
P P Q+ G+ P GV + QG P Q+Q+Q LGE L+ +
Sbjct: 149 PFNGPNPQMSGVPPQQFRNGPGVYGMPAQGSFPPNDQFFQ----QKQRQALGEELYKKVS 204
Query: 247 -QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
+ E AGKITGM+L++ E++ +LE+NE + +EA A ++ +
Sbjct: 205 AKTSDEEAAGKITGMILDLPPQEVMPLLENNELFEQHFKEAFAAYESFK 253
>gi|367030019|ref|XP_003664293.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
gi|347011563|gb|AEO59048.1| hypothetical protein MYCTH_2306966 [Myceliophthora thermophila ATCC
42464]
Length = 787
Score = 89.0 bits (219), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 49/99 (49%), Positives = 63/99 (63%)
Query: 201 GGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGM 260
GG+ PA A + L S + A + PQ+QKQ+LGE LFP IQ + PELAGKITGM
Sbjct: 663 GGVPPAGPLGGAGELNATSLLQSQLAATSNPQQQKQILGENLFPKIQALQPELAGKITGM 722
Query: 261 LLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
LLE+DN EL+ +LE +L +KV EA+AV + Q A
Sbjct: 723 LLEMDNNELVNLLEDETALVAKVNEAMAVYDEYVKSQQA 761
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV FS+ + A KAV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 279 DQEGKSRGFGFVNFSTHDSAAKAVEELNGKEFRGQELYVGRAQKKHEREEELRKSY 334
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 186 DENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANYT 245
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 246 NVYVKNI 252
>gi|53801474|gb|AAU93939.1| polyadenylate binding protein [Helicosporidium sp. ex Simulium
jonesi]
Length = 107
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 44/76 (57%), Positives = 59/76 (77%)
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
P S +LA+A P++QKQ+LGE+LFP + + PELA KITGMLLE+DN+EL+ ++E E+L
Sbjct: 12 PQLSAILASASPEQQKQLLGEQLFPKVAQHQPELAAKITGMLLEMDNSELVLLIETPEAL 71
Query: 280 KSKVEEAVAVLQAHQA 295
KV EAV VL+AH A
Sbjct: 72 ADKVAEAVEVLRAHNA 87
>gi|121702907|ref|XP_001269718.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
gi|158512635|sp|A1CRM1.1|PABP_ASPCL RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119397861|gb|EAW08292.1| polyadenylate-binding protein [Aspergillus clavatus NRRL 1]
Length = 754
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 57/73 (78%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT+ L AA P +QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE +++L+
Sbjct: 652 LTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALR 711
Query: 281 SKVEEAVAVLQAH 293
+KV+EA++V +
Sbjct: 712 AKVDEALSVYDEY 724
Score = 53.9 bits (128), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+S+GFGFV +S+ E A AV EM+ + + ++ LYV AQ+K +R+ L QY
Sbjct: 268 EGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQY 321
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 173 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFT 232
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I ++ ++ ++F+
Sbjct: 233 NIYIKNIDPDVTEEEFRKIFE 253
>gi|354544113|emb|CCE40835.1| hypothetical protein CPAR2_108740 [Candida parapsilosis]
Length = 650
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 50/93 (53%), Positives = 60/93 (64%), Gaps = 10/93 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ + G+SKGFGFVCFS+PEEATKA+TEMN R+I KPLYVALAQRK+ R++ L Q R
Sbjct: 380 VDDAGKSKGFGFVCFSTPEEATKAITEMNQRMINGKPLYVALAQRKDVRRSQLEQQIQAR 439
Query: 61 IANMRMQQM-------GQLFQPGSTG--GYFVP 84
MRMQ GQ P G G+F P
Sbjct: 440 -NQMRMQNAAAAGGFPGQFMPPMYYGQQGFFPP 471
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 27/73 (36%), Positives = 39/73 (53%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+DG+SKGFGFV + + A AV +N + I + +YV AQ+K +R L QY R
Sbjct: 278 DQDGKSKGFGFVNYEEHKSAVDAVEALNDKEINGQKIYVGRAQKKRERTEELKKQYEAIR 337
Query: 61 IANMRMQQMGQLF 73
+ + Q LF
Sbjct: 338 LEKLSKYQGVNLF 350
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLASQY 57
G+SK FGFV + + E A A+ +NG ++ + ++V K+DR KA+ + Y
Sbjct: 188 GQSKCFGFVHYETGEAAEAAIENVNGMLLNDREVFVGKHVSKKDRESKFEEMKANYTNIY 247
Query: 58 MQRIA-NMRMQQMGQLFQP 75
++ I ++ +LF P
Sbjct: 248 VKNIDLGFTEKEFEELFAP 266
>gi|213403408|ref|XP_002172476.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212000523|gb|EEB06183.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 662
Score = 89.0 bits (219), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 63/146 (43%), Positives = 78/146 (53%), Gaps = 23/146 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G+SKGFGFVC+SSPEEATKA+ EMN R++ KPLYVALAQRK+ R++ L +Q R
Sbjct: 397 DENGKSKGFGFVCYSSPEEATKAIAEMNQRMLAGKPLYVALAQRKDVRRSQLEAQIQAR- 455
Query: 62 ANMRMQQM-------GQLFQPGST----GGYFVPTLPQPQRFYGPTQMTQIRPQPRW--- 107
RMQQ Q PG+ GGY LP R + P +W
Sbjct: 456 NQFRMQQQVAAAGMSAQFGIPGAMYYGPGGY---PLPAGARGVPMPHPNMMPPNGKWPVD 512
Query: 108 AAAPQ-----MRPSGQTAQGFPNIPQ 128
AAPQ + P G A FP P+
Sbjct: 513 GAAPQPGMVPVYPPGVAAPNFPGYPR 538
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 52/69 (75%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+A P+ QKQ+LGE +PLI + ELAGKITGMLLE+DNAELL +++ E+L KV+E
Sbjct: 566 FSAETPENQKQILGEYFYPLIAQREAELAGKITGMLLEMDNAELLGLVQDIEALNGKVDE 625
Query: 286 AVAVLQAHQ 294
A++VL+ Q
Sbjct: 626 ALSVLKEFQ 634
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 30/70 (42%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+ +GFGFV F S E A KAV EMN K LYV AQ++ +R+A L +Y Q
Sbjct: 294 DESGKPRGFGFVNFESHEAAQKAVDEMNDYEFHGKKLYVGRAQKRHEREAELRKRYEQ-- 351
Query: 62 ANMRMQQMGQ 71
M++++M +
Sbjct: 352 --MKLEKMSK 359
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 37/68 (54%), Gaps = 7/68 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHL 53
+ E G SKG+GFV F+S + A A+ +NG ++ K +YV + DR KA+
Sbjct: 200 LDEYGNSKGYGFVHFASIDSANAAIEHVNGMLLNDKKVYVGHHVSRRDRQSKFEAMKANF 259
Query: 54 ASQYMQRI 61
+ Y++ I
Sbjct: 260 TNVYIKNI 267
>gi|403417917|emb|CCM04617.1| predicted protein [Fibroporia radiculosa]
Length = 671
Score = 88.6 bits (218), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 43/82 (52%), Positives = 58/82 (70%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
++S +LA A P EQKQMLGE ++ I +P+LAGKITGMLLE+DNAELL++L+ ES+
Sbjct: 590 ISSALLANASPMEQKQMLGEVIYMKIAPAHPDLAGKITGMLLEMDNAELLHLLDDQESMN 649
Query: 281 SKVEEAVAVLQAHQAKQAAVKK 302
+KV EA+ VL K+ K
Sbjct: 650 NKVNEALVVLHEFSQKEVVESK 671
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 37/122 (30%), Positives = 59/122 (48%), Gaps = 10/122 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++GRS+GFGFV F +EA KAV ++ K L+V+ AQ+K +R+ L Y Q
Sbjct: 259 DDEGRSRGFGFVNFEVHDEAQKAVEGLHDLDFKGKKLFVSRAQKKAEREQELRQSYEQ-- 316
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
+M++M + FQ + ++ L T+ P +A MR T++
Sbjct: 317 --AKMEKMSK-FQGVNL---YIKNLEDDLD--DDRLRTEFEPFGSITSAKVMRDEKGTSK 368
Query: 122 GF 123
GF
Sbjct: 369 GF 370
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 19/52 (36%), Positives = 32/52 (61%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
E GRSKG+GFV + + E A A+ +NG ++ K +YV +++R++ L
Sbjct: 166 DEHGRSKGYGFVHYETAEAAETAIKAVNGMLLNDKKVYVGYHISRKERQSKL 217
>gi|84998214|ref|XP_953828.1| polyadenylate (poly(A)) binding protein [Theileria annulata]
gi|65304825|emb|CAI73150.1| polyadenylate (poly(A)) binding protein, putative [Theileria
annulata]
Length = 664
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 50/58 (86%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QKQM+GERLFP+I R P+LAGKITGM+LEIDN ELL +LE N+ LK+K++EA+ VL+
Sbjct: 604 QKQMIGERLFPIIARDNPDLAGKITGMMLEIDNHELLQLLEDNDQLKAKIDEAIKVLK 661
Score = 60.5 bits (145), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 37/47 (78%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47
+ + S+GFGFVCF++P+EATKA+ M+ +++ KPLYV LA++++
Sbjct: 339 LDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKPLYVGLAEKRD 385
Score = 40.8 bits (94), Expect = 0.74, Method: Compositional matrix adjust.
Identities = 20/46 (43%), Positives = 31/46 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
G SK +GFV + + E A +A+ ++NG +IG K + VA RK+DR+
Sbjct: 152 GASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDRE 197
>gi|18402769|ref|NP_564554.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|334183191|ref|NP_001185184.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|10120431|gb|AAG13056.1|AC011807_15 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|13877633|gb|AAK43894.1|AF370517_1 Putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|17978685|gb|AAL47336.1| putative Poly-A Binding Protein [Arabidopsis thaliana]
gi|332194351|gb|AEE32472.1| poly(A) binding protein 8 [Arabidopsis thaliana]
gi|332194352|gb|AEE32473.1| poly(A) binding protein 8 [Arabidopsis thaliana]
Length = 671
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 63/126 (50%), Positives = 76/126 (60%), Gaps = 27/126 (21%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RIAN 63
G S+G GFV FS+PEEAT+A+TEMNG++I +KPLYVALAQRKEDRKA L +Q+ Q R N
Sbjct: 364 GVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVN 423
Query: 64 M------RMQQMGQLFQPGSTGGYFVPTLPQPQRFY--GPTQMTQIRPQPRWA----AAP 111
M RM Q++ PG P + Q Q FY GP M PQP + P
Sbjct: 424 MPPAVGPRM----QMYPPGG------PPMGQ-QLFYGQGPPAMI---PQPGFGYQQQLVP 469
Query: 112 QMRPSG 117
MRP G
Sbjct: 470 GMRPGG 475
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+SKGFGFV F + ++A +AV +NG+ K +V AQ+K +R+ L ++ Q +
Sbjct: 260 EGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSL 317
Score = 38.9 bits (89), Expect = 2.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 42/75 (56%), Gaps = 6/75 (8%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLASQYMQ 59
G+SKG+GFV + + E A A+ ++NG ++ K +YV K R K + Y++
Sbjct: 170 GQSKGYGFVQYDTDEAAQGAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVK 229
Query: 60 RIA-NMRMQQMGQLF 73
++ ++ +++ ++F
Sbjct: 230 NLSESLSDEELNKVF 244
>gi|71033649|ref|XP_766466.1| polyadenylate binding protein [Theileria parva strain Muguga]
gi|68353423|gb|EAN34183.1| polyadenylate binding protein, putative [Theileria parva]
Length = 661
Score = 88.2 bits (217), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 39/58 (67%), Positives = 50/58 (86%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QKQM+GERLFP+I R P+LAGKITGM+LEIDN ELL +LE N+ LK+K++EA+ VL+
Sbjct: 601 QKQMIGERLFPIIARDNPDLAGKITGMMLEIDNHELLQLLEDNDQLKAKIDEAIKVLK 658
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 37/47 (78%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47
+ + S+GFGFVCF++P+EATKA+ M+ +++ KPLYV LA++++
Sbjct: 339 LDANNHSRGFGFVCFTNPQEATKAIAAMHLKLVKGKPLYVGLAEKRD 385
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 32/47 (68%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G SK +GFV + + E A +A+ ++NG +IG K + VA RK+DR++
Sbjct: 152 GASKRYGFVHYENEESAREAIEKVNGMLIGGKRVEVAPFLRKQDRES 198
>gi|50293737|ref|XP_449280.1| hypothetical protein [Candida glabrata CBS 138]
gi|74690665|sp|Q6FKG4.1|PABP_CANGA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49528593|emb|CAG62254.1| unnamed protein product [Candida glabrata]
Length = 579
Score = 88.2 bits (217), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 353 TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 411
Query: 62 ANMRMQQ 68
MR QQ
Sbjct: 412 NQMRFQQ 418
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G +KGFGFV F + E+A K V E+N +PLYV AQ+K +R+ L QY
Sbjct: 252 EGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQY----EA 307
Query: 64 MRMQQMGQ 71
RM++M +
Sbjct: 308 TRMEKMAK 315
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRK-----EDRKAHLA 54
E G+SKGFG+V F E A++A+ +NG ++ + +YV L++++ E+ KA+
Sbjct: 157 DETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFT 216
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 217 NVYIKNI 223
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE L+ I + E AGKITGM+L++ E++ +LE++E + +EA A
Sbjct: 501 QKQRQALGEELYKRIFSRTNDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEASAA 560
Query: 290 LQAHQ 294
++ +
Sbjct: 561 YESFK 565
>gi|171681916|ref|XP_001905901.1| hypothetical protein [Podospora anserina S mat+]
gi|170940917|emb|CAP66567.1| unnamed protein product [Podospora anserina S mat+]
Length = 804
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 42/64 (65%), Positives = 52/64 (81%), Gaps = 1/64 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P++ATKAVTEMN R+I +KPLYVALAQRK+ RK+ L + R +
Sbjct: 473 GKSKGFGFVCFSNPDDATKAVTEMNQRMIDNKPLYVALAQRKDVRKSQLEASIQAR-NQL 531
Query: 65 RMQQ 68
RMQQ
Sbjct: 532 RMQQ 535
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 39/56 (69%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
S++G+S+GFGFV F++ E A+KAV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 329 SDEGKSRGFGFVNFTTHEAASKAVEELNGKDFRGQELYVGRAQKKHEREEELRRSY 384
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 44/80 (55%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A A+ +NG ++ K +YV K+DR KA+
Sbjct: 236 DENGNSKGYGFVHYETDEAAANAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFT 295
Query: 55 SQYMQRI-ANMRMQQMGQLF 73
+ Y++ I A + ++ +LF
Sbjct: 296 NVYVKNIPAEVTDEEFRELF 315
>gi|242802487|ref|XP_002483981.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
gi|218717326|gb|EED16747.1| polyadenylate-binding protein [Talaromyces stipitatus ATCC 10500]
Length = 751
Score = 87.8 bits (216), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 56/73 (76%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT L+AA PQ+QKQMLGE L+P IQ PELAGKITGMLLE+DNAELL +++ +L+
Sbjct: 652 LTLQTLSAAPPQQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLIDDESALR 711
Query: 281 SKVEEAVAVLQAH 293
+KV+EA+ V +
Sbjct: 712 AKVDEALHVYDEY 724
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 34/56 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ G+S+GFGFV + + A AV E+N + S+ LYV AQ+K +R+ L QY
Sbjct: 265 DDSGKSRGFGFVNYVDHQNAQSAVDELNDKDFHSQKLYVGRAQKKHEREEELRRQY 320
Score = 45.1 bits (105), Expect = 0.036, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 172 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 231
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 232 NVYVKNI 238
>gi|366987097|ref|XP_003673315.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
gi|342299178|emb|CCC66926.1| hypothetical protein NCAS_0A03680 [Naumovozyma castellii CBS 4309]
Length = 575
Score = 87.8 bits (216), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 61/93 (65%), Gaps = 4/93 (4%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+++G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 353 TDNGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 411
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYG 94
MR QQ + G +P P FYG
Sbjct: 412 TQMRYQQATAAAAAAAAG---IPGQFMPPMFYG 441
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 32/73 (43%), Positives = 42/73 (57%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQR 60
+EDG+ KGFGFV F E+A KAV E+NG + L+V+ AQ+K +R L QY R
Sbjct: 250 TEDGKLKGFGFVDFEKHEDAAKAVEELNGTEFKDQTLFVSRAQKKYERMQELKKQYEASR 309
Query: 61 IANMRMQQMGQLF 73
+ M Q LF
Sbjct: 310 LEKMAKYQGVNLF 322
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 45/81 (55%), Gaps = 10/81 (12%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRKEDR-----KAHLA 54
E G+SKGFGFV F A +A+ +NG ++ + +YVA L +++ D KAH
Sbjct: 157 DETGKSKGFGFVHFEHESSAKEAIDALNGMLLNGQEIYVAPHLTRKERDSQLEETKAHFT 216
Query: 55 SQYMQRIANMRM--QQMGQLF 73
+ Y++ I N+ ++ +LF
Sbjct: 217 NVYVKNI-NLETTDEEFNELF 236
Score = 40.4 bits (93), Expect = 0.95, Method: Compositional matrix adjust.
Identities = 22/65 (33%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
+ Q+Q LGE L+ + + E AGKITGM+L++ E++ +LE++E + +EA A
Sbjct: 492 KNQRQALGEELYKKVSAKNADEEAAGKITGMILDLPPQEVVSLLENDELFEQHFKEASAA 551
Query: 290 LQAHQ 294
++ +
Sbjct: 552 YESFK 556
>gi|353227476|emb|CCA77984.1| related to mRNA polyadenylate-binding protein PAB1 [Piriformospora
indica DSM 11827]
Length = 693
Score = 87.4 bits (215), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 41/67 (61%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G SKGFGFVCFS+P+EAT+A+ EMN ++IGSKPLYV+LAQR++ R+ L SQ QR
Sbjct: 431 DDKGVSKGFGFVCFSTPDEATRAIAEMNNKMIGSKPLYVSLAQRRDVRRQQLESQISQR- 489
Query: 62 ANMRMQQ 68
+RMQQ
Sbjct: 490 NQIRMQQ 496
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/68 (38%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY--- 57
+ DG+SKGFGFV + + E A KAV +N + I K L+V AQ++ +R L +
Sbjct: 327 LDADGKSKGFGFVNYETHEMAQKAVDALNEKDINGKKLFVGRAQKRNERDEELRRTFDAA 386
Query: 58 -MQRIANM 64
M+R+A +
Sbjct: 387 KMERLAKL 394
>gi|444321552|ref|XP_004181432.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
gi|387514476|emb|CCH61913.1| hypothetical protein TBLA_0F03780 [Tetrapisispora blattae CBS 6284]
Length = 577
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 47/93 (50%), Positives = 61/93 (65%), Gaps = 4/93 (4%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFS+PEEAT+A+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 361 TENGKSKGFGFVCFSTPEEATRAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 419
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYG 94
MR QQ + G +P P FYG
Sbjct: 420 NQMRYQQATAAAAAAAAG---IPGQFMPPMFYG 449
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+S+GFGFV F + E+A KAV +N + LYV AQ+K +R L QY
Sbjct: 260 EGKSRGFGFVDFENHEDAVKAVEALNDTEYKGQTLYVGRAQKKYERLQELKKQY 313
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 34/52 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
E G+SKGFGFV F + E A +A+ +NG ++ + +YVA K+DR++ L
Sbjct: 165 DETGKSKGFGFVHFENEEAAREAIDAINGMLLNGQEVYVAPHVSKKDRQSKL 216
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE+L+ + + E AGKITGM+L++ E++ +LE++E + EA A
Sbjct: 499 QKQRQALGEQLYKKVSAKTSDEEAAGKITGMILDLPAQEVVPLLENDELFEQHFNEAFAA 558
Query: 290 LQAHQ 294
++ +
Sbjct: 559 YESFK 563
>gi|432102707|gb|ELK30188.1| Polyadenylate-binding protein 1 [Myotis davidii]
Length = 650
Score = 87.4 bits (215), Expect = 7e-15, Method: Compositional matrix adjust.
Identities = 60/112 (53%), Positives = 77/112 (68%), Gaps = 2/112 (1%)
Query: 191 NPGTQPQAQIGGIQP-AAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRM 249
NPG Q+ G QP AA QG++ L ++ L +A P++QK++LGE LFPLIQ +
Sbjct: 530 NPGVC-NPQLLGTQPQKAAKPPVAREQGRKCLITSTLVSASPEDQKKILGEWLFPLIQAL 588
Query: 250 YPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 301
P LA KI GMLLE+DN+ELL +LE ES SKV+EAVAVL+A QA+QA K
Sbjct: 589 QPTLASKIMGMLLEMDNSELLLLLESPESFCSKVDEAVAVLEACQAQQAERK 640
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/59 (54%), Positives = 47/59 (79%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
GR KGFGFV FSS EEA KAV EM+G+++ ++PLYV+ A+ K++R+A+ AS Y ++ A+
Sbjct: 338 GRRKGFGFVSFSSREEAKKAVEEMHGKMLSARPLYVSYARYKQERRAYFASYYGKKKAS 396
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 37/50 (74%), Gaps = 1/50 (2%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
M++D G+SKGFGF+ F +A +A+ E+NG+ G + +YV+ AQ+K++R
Sbjct: 231 MTDDSGKSKGFGFIRFECHADAKRAIEEVNGKQFGGRKIYVSRAQKKKER 280
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 32/105 (30%), Positives = 53/105 (50%), Gaps = 17/105 (16%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVAL----AQRKEDRKAHLASQ 56
+S++ KG GFV F + E A KA+ EMNG ++ + ++V QR+E+R+A
Sbjct: 139 VSDENGPKGHGFVHFETREAADKAIKEMNGSLVKERKVFVGQFKRPNQREEERRAK---- 194
Query: 57 YMQRIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
M++ N+ ++ F G+T Y + Q YGP +I
Sbjct: 195 -MEQFTNVYVKN----FADGTTDEYLLEIFSQ----YGPLSSVKI 230
>gi|156846854|ref|XP_001646313.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
gi|156116988|gb|EDO18455.1| hypothetical protein Kpol_1032p49 [Vanderwaltozyma polyspora DSM
70294]
Length = 580
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/67 (64%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E G+SKGFGFVCFSSPEEAT+A+TE N +I+ KPLYVALAQRK+ R++ LA Q R
Sbjct: 369 NETGKSKGFGFVCFSSPEEATRAITEKNQQIVAGKPLYVALAQRKDVRRSQLAQQIQAR- 427
Query: 62 ANMRMQQ 68
MR QQ
Sbjct: 428 NQMRYQQ 434
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 28/71 (39%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RIA 62
+G+ +GFGFV + + E A KAV E+N S+ LYV AQ+K +R L QY + ++
Sbjct: 268 EGKFRGFGFVNYENHESAAKAVDELNDLEFKSQKLYVGRAQKKYERLQELKKQYEEAKLE 327
Query: 63 NMRMQQMGQLF 73
M Q LF
Sbjct: 328 KMAKYQGVNLF 338
Score = 44.7 bits (104), Expect = 0.056, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G+SKGFGFV F A++A+ +NG ++ +YVA ++DR KA+
Sbjct: 173 DETGKSKGFGFVHFEEDTAASEAIDAINGMMLNGLEVYVAAHVSRKDRESKFEAAKANFT 232
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 233 NVYVKNV 239
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q Q+Q LGE L+ + + E AGKITGM+L++ E++ +LE++E + +EA A
Sbjct: 510 QNQRQALGEELYKKVSAKTSDEEAAGKITGMILDLPPQEVMPLLENDELFEQHFKEAFAA 569
Query: 290 LQAHQAKQ 297
++ + +Q
Sbjct: 570 YESFKKEQ 577
>gi|212540254|ref|XP_002150282.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
gi|210067581|gb|EEA21673.1| polyadenylate-binding protein [Talaromyces marneffei ATCC 18224]
Length = 748
Score = 87.4 bits (215), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 55/73 (75%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT L AA PQ+QKQMLGE L+P IQ PELAGKITGMLLE+DNAELL +++ +L+
Sbjct: 649 LTLQALTAAPPQQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLIDDESALR 708
Query: 281 SKVEEAVAVLQAH 293
+KV+EA+ V +
Sbjct: 709 AKVDEALHVYDEY 721
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 33/56 (58%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ G+S+GFGFV + E A AV ++N + + LYV AQ+K +R+ L QY
Sbjct: 265 DDSGKSRGFGFVNYVDHENAQTAVDDLNDKDFHGQKLYVGRAQKKHEREEELRRQY 320
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 172 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 231
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 232 NVYVKNI 238
>gi|407920118|gb|EKG13336.1| hypothetical protein MPH_09618 [Macrophomina phaseolina MS6]
Length = 768
Score = 87.0 bits (214), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 56/127 (44%), Positives = 71/127 (55%), Gaps = 22/127 (17%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EATKAVTEMN +++ KPLYVALAQRK+ RK+ L +
Sbjct: 440 GKSKGFGFVCFSNPDEATKAVTEMNQKMMNGKPLYVALAQRKDVRKSQLEAT-------- 491
Query: 65 RMQQMGQLFQPGSTGGYFVPT--LPQPQRFYGPTQMTQIRPQPRWAAA-----PQMRPSG 117
+Q Q+ + +PT QPQ F+GP Q QP PQ P+G
Sbjct: 492 -IQARNQIRMQQAAAAAGMPTQQFVQPQMFFGPGQ------QPFMGGRGQMPFPQGMPAG 544
Query: 118 QTAQGFP 124
GFP
Sbjct: 545 GRGAGFP 551
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV F E A KAV E+N + + LYV AQ+K +R+ L QY
Sbjct: 273 NETGKSRGFGFVNFVKHESAAKAVDELNDKDWKGQKLYVGRAQKKHEREEELRKQY 328
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 179 DENGNSKGYGFVHYETAEAANNAIKAVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFT 238
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 239 NVYVKNI 245
>gi|323448756|gb|EGB04650.1| hypothetical protein AURANDRAFT_55048 [Aureococcus anophagefferens]
Length = 604
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 62/145 (42%), Positives = 76/145 (52%), Gaps = 12/145 (8%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G S+GFGFVCFSSPEEA KAVTEMN +++ KP++VALAQRKE R+A L +Q+ QR
Sbjct: 338 GTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRRTTA 397
Query: 65 RMQQMGQLFQPGSTGGYFV-PTLPQ---PQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
PG+ G V P PQ P P P A AP P G T
Sbjct: 398 PYGA-----HPGAMGPAGVPPHAPQGLHPAHLGAPYGTAM--PIMYAAGAPNGHPMGMTP 450
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGA 145
QG P +P P + G + RG+
Sbjct: 451 QGHPGVP-IAGVPPNARGYVMARGS 474
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
E GRS+G+G+V + S + AT A+ ++N I K +YV R+ +R
Sbjct: 134 DEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTER 181
>gi|410956870|ref|XP_003985059.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Felis catus]
Length = 486
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 38/52 (73%), Positives = 46/52 (88%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH 52
M E+GRSKGFG +CFSSPEEATKA+ EMNGRI+GSKPLY+ALAQ+ +R A+
Sbjct: 424 MREEGRSKGFGLICFSSPEEATKAMAEMNGRILGSKPLYIALAQKPXERNAY 475
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNG+ I + L+V AQ+K +R+A L + Q
Sbjct: 326 GKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKSERQAELKQVFEQ 380
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D S+G+ FV F + A +A+ EMNG ++ L+V + ++DR+A L ++
Sbjct: 229 MSDDQGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELRNK-ANE 287
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 288 FTNVYIKNFGD 298
>gi|344277245|ref|XP_003410413.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Loxodonta africana]
Length = 602
Score = 87.0 bits (214), Expect = 9e-15, Method: Compositional matrix adjust.
Identities = 40/60 (66%), Positives = 48/60 (80%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFG +CFSS EEA KA+TEMNGRI+GSKPL +ALAQR E+RK +Q + R
Sbjct: 518 MQEEGRSKGFGLICFSSHEEAIKAMTEMNGRILGSKPLNIALAQRNEERKTCFDNQXVGR 577
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F+S E A AV EMNG+ I + ++V AQ+K +R+A L + Q
Sbjct: 420 GKSKGFGFVSFASHEAAKNAVEEMNGKDINGQLIFVGRAQKKIERQAELKQMFEQ 474
Score = 44.7 bits (104), Expect = 0.055, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F + A +A+ EMNG ++ + ++V+ + ++DR++ L ++ +
Sbjct: 323 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGTLLKNCRVFVSRFKSRKDRESELKNKASE- 381
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 382 FTNVYIKNFGD 392
>gi|255718749|ref|XP_002555655.1| KLTH0G14344p [Lachancea thermotolerans]
gi|238937039|emb|CAR25218.1| KLTH0G14344p [Lachancea thermotolerans CBS 6340]
Length = 587
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 61/131 (46%), Positives = 73/131 (55%), Gaps = 20/131 (15%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRKE R++ LA Q R
Sbjct: 358 DEAGNSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRSQLAQQIQAR- 416
Query: 62 ANMRMQQM-----------GQLFQPGSTGGYFVPTLPQPQRFYGPT--QMTQIRPQPRWA 108
MR QQ GQ QP G +P P+ F GP QM + P+
Sbjct: 417 NQMRYQQATAAAAAAAGMPGQFMQPMFYG--VMP--PRGVPFNGPNPQQMAAMNGIPKNG 472
Query: 109 AAPQM--RPSG 117
PQ RP+G
Sbjct: 473 VPPQQFGRPAG 483
Score = 45.8 bits (107), Expect = 0.026, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 34/65 (52%), Gaps = 4/65 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY---- 57
+G+ +GFGFV F A KA E+N + LYV AQ+K +R L QY
Sbjct: 255 DNEGKLRGFGFVNFEDHNAALKACEELNDTDFKGQKLYVGRAQKKYERLQELKKQYESSR 314
Query: 58 MQRIA 62
M+++A
Sbjct: 315 MEKLA 319
Score = 44.3 bits (103), Expect = 0.071, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE+L+ + + E AGKITGM+L++ E++ +LE++E + +EA A
Sbjct: 507 QKQRQALGEQLYKRVSAKTQDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEAFAA 566
Query: 290 LQAHQAKQAA 299
+ + Q A
Sbjct: 567 YDSFKKDQDA 576
>gi|320032897|gb|EFW14847.1| polyadenylate-binding protein [Coccidioides posadasii str.
Silveira]
Length = 768
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 56/73 (76%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT +L AA P +QKQMLGE ++P IQ PELAGKITGMLLE+DNAELL +++ + +LK
Sbjct: 665 LTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLALVDDDAALK 724
Query: 281 SKVEEAVAVLQAH 293
+KV+EA+ V +
Sbjct: 725 AKVDEALTVYDEY 737
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV F+S + A AV +N + + LYV AQ+K +R+ L QY
Sbjct: 271 AESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQY 326
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 177 DEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFT 236
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I + ++ LF+
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFE 257
>gi|303322729|ref|XP_003071356.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
gi|240111058|gb|EER29211.1| Poly-binding protein FabM, putative [Coccidioides posadasii C735
delta SOWgp]
Length = 768
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 56/73 (76%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT +L AA P +QKQMLGE ++P IQ PELAGKITGMLLE+DNAELL +++ + +LK
Sbjct: 665 LTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLALVDDDAALK 724
Query: 281 SKVEEAVAVLQAH 293
+KV+EA+ V +
Sbjct: 725 AKVDEALTVYDEY 737
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV F+S + A AV +N + + LYV AQ+K +R+ L QY
Sbjct: 271 AESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQY 326
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 177 DEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFT 236
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I + ++ LF+
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFE 257
>gi|453085206|gb|EMF13249.1| polyadenylate binding protein [Mycosphaerella populorum SO2202]
Length = 760
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 49/92 (53%), Positives = 59/92 (64%), Gaps = 7/92 (7%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EATKAVTE+N ++I KPLYVALAQRKE RK+ L + R +
Sbjct: 429 GKSKGFGFVCFSNPDEATKAVTELNQKMIHGKPLYVALAQRKEVRKSQLEASIQAR-NQV 487
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPT 96
RMQQ + GG QPQ GP
Sbjct: 488 RMQQQ------ATAGGIPPQAFMQPQFVLGPN 513
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+ +GFGFV + E+A KAV E+N S+ LYV AQ+K +R+ L QY
Sbjct: 268 DQEGKVRGFGFVNYIRHEDANKAVDELNDIDFKSQKLYVGRAQKKHEREEELRRQY 323
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G S+G+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 175 DESGGSRGYGFVHYETAEAANAAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANFT 234
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 235 NIYVKNI 241
>gi|119189891|ref|XP_001245552.1| hypothetical protein CIMG_04993 [Coccidioides immitis RS]
gi|121937111|sp|Q1DXH0.1|PABP_COCIM RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|392868454|gb|EAS34245.2| polyadenylate-binding protein, cytoplasmic and nuclear
[Coccidioides immitis RS]
Length = 768
Score = 87.0 bits (214), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 56/73 (76%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT +L AA P +QKQMLGE ++P IQ PELAGKITGMLLE+DNAELL +++ + +LK
Sbjct: 665 LTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLALVDDDAALK 724
Query: 281 SKVEEAVAVLQAH 293
+KV+EA+ V +
Sbjct: 725 AKVDEALTVYDEY 737
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV F+S + A AV +N + + LYV AQ+K +R+ L QY
Sbjct: 271 AESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQY 326
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 177 DEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFT 236
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I + ++ LF+
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFE 257
>gi|164657987|ref|XP_001730119.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
gi|159104014|gb|EDP42905.1| hypothetical protein MGL_2501 [Malassezia globosa CBS 7966]
Length = 664
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 42/84 (50%), Positives = 63/84 (75%)
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
E LT+ LA A P+EQKQMLGE ++P I P+LAGK+TGM+LE+ ELL+++E +E+
Sbjct: 580 EVLTAAALANASPEEQKQMLGEAIYPKIASTQPQLAGKLTGMILELPVGELLHLVEDDEA 639
Query: 279 LKSKVEEAVAVLQAHQAKQAAVKK 302
L SKV+EA+ VL+ +++++ A K
Sbjct: 640 LASKVDEALTVLREYESREGAEVK 663
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV FS E+A KAV E+N + L++ AQ+K +R+ L Y
Sbjct: 294 DQEGKSRGFGFVNFSEHEQAAKAVEELNDTEFHGQKLFLGRAQKKSEREEELRRAY 349
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 22/81 (27%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
S + S G+GFV + S + A A+ +NG ++ K +YV K+DR +AH
Sbjct: 201 SNEHGSLGYGFVHYESNDAAEAAIKHVNGMLLNDKKVYVGHHISKKDRQAKIEEARAHYT 260
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ + + ++ +LF+
Sbjct: 261 NVYVKNLDPAVTQEEFEKLFE 281
>gi|336276750|ref|XP_003353128.1| hypothetical protein SMAC_03445 [Sordaria macrospora k-hell]
gi|380092612|emb|CCC09889.1| unnamed protein product [Sordaria macrospora k-hell]
Length = 754
Score = 86.7 bits (213), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P++ATKAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 423 GKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQAR-NQL 481
Query: 65 RMQQ 68
RMQQ
Sbjct: 482 RMQQ 485
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+++GFGFV F++ E A KAV ++NG+ + LYV AQ+K +R+ L Y
Sbjct: 276 DQEGKTRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRRSY 331
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A++A+ +NG ++ K +YV K+DR KA+
Sbjct: 183 DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 242
Query: 55 SQYMQRIAN-MRMQQMGQLFQ 74
+ Y++ I + + + +LF+
Sbjct: 243 NVYVKNINHEVTDDEFRELFE 263
>gi|403221305|dbj|BAM39438.1| polyadenylate-binding protein [Theileria orientalis strain
Shintoku]
Length = 656
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 50/58 (86%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QKQM+GERLFP+I R P+LAGKITGM+LEIDN ELL +L+ N+ LK+K++EA+ VL+
Sbjct: 596 QKQMIGERLFPIIARDNPDLAGKITGMMLEIDNQELLQLLDDNDQLKAKIDEAIRVLK 653
Score = 63.2 bits (152), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 45/68 (66%), Gaps = 13/68 (19%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ + S+GFGFVCFS+P+EATKA+ M+ +++ KPLYV LA++++ QR
Sbjct: 339 LDANNNSRGFGFVCFSNPQEATKAIAAMHLKLVKGKPLYVGLAEKRD-----------QR 387
Query: 61 IANMRMQQ 68
+ MRMQQ
Sbjct: 388 L--MRMQQ 393
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 31/47 (65%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G S+ +GFV + S E A +A+ ++NG +IG K + VA RK+DR+
Sbjct: 152 GASRRYGFVHYESEESAREAIEKVNGMLIGGKKVEVAPFLRKQDRET 198
>gi|336465951|gb|EGO54116.1| hypothetical protein NEUTE1DRAFT_87204 [Neurospora tetrasperma FGSC
2508]
gi|350287213|gb|EGZ68460.1| polyadenylate binding protein [Neurospora tetrasperma FGSC 2509]
Length = 764
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P++ATKAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 421 GKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQAR-NQL 479
Query: 65 RMQQ 68
RMQQ
Sbjct: 480 RMQQ 483
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+++GFGFV F++ E A +AV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 275 DQEGKTRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSY 330
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A++A+ +NG ++ K +YV K+DR KA+
Sbjct: 182 DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 241
Query: 55 SQYMQRIAN-MRMQQMGQLF 73
+ Y++ I N + ++ +LF
Sbjct: 242 NVYVKNINNEVTDEEFRELF 261
>gi|85097328|ref|XP_960425.1| polyadenylate-binding protein [Neurospora crassa OR74A]
gi|74696454|sp|Q7S6N6.1|PABP_NEUCR RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|28921916|gb|EAA31189.1| polyadenylate-binding protein [Neurospora crassa OR74A]
Length = 764
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P++ATKAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 422 GKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQAR-NQL 480
Query: 65 RMQQ 68
RMQQ
Sbjct: 481 RMQQ 484
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV F++ E A +AV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 275 DQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSY 330
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A++A+ +NG ++ K +YV K+DR KA+
Sbjct: 182 DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 241
Query: 55 SQYMQRIAN-MRMQQMGQLF 73
+ Y++ I N + ++ +LF
Sbjct: 242 NVYVKNINNEVTDEEFRELF 261
>gi|116202083|ref|XP_001226853.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
gi|121932498|sp|Q2GSX8.1|PABP_CHAGB RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|88177444|gb|EAQ84912.1| hypothetical protein CHGG_08926 [Chaetomium globosum CBS 148.51]
Length = 783
Score = 86.3 bits (212), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
L S + A PQ+QKQ+LGE LFP IQ + P+LAGKITGMLLE+DNAEL+ +LE +L
Sbjct: 679 LQSQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALV 738
Query: 281 SKVEEAVAVLQAHQAKQ 297
+KV EA+AV + Q
Sbjct: 739 AKVNEAMAVYDEYVKSQ 755
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+S+GFGFV F++ E A KAV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 280 DSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSY 335
Score = 45.8 bits (107), Expect = 0.021, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A +A+ +N ++ K +YV K+DR KA+
Sbjct: 187 DENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFT 246
Query: 55 SQYMQRIA 62
+ Y++ I+
Sbjct: 247 NIYVKNIS 254
>gi|432101459|gb|ELK29641.1| Polyadenylate-binding protein 4 [Myotis davidii]
Length = 146
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 43/65 (66%), Positives = 50/65 (76%), Gaps = 1/65 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPE A KAVT+MNG ++ SKPLYVALA+R+ A+L Q MQ
Sbjct: 76 MLEDGRSKGFGFVCFSSPE-AIKAVTKMNGCVMSSKPLYVALARRRGKGSAYLTDQDMQW 134
Query: 61 IANMR 65
+A R
Sbjct: 135 VAGKR 139
>gi|428673176|gb|EKX74089.1| polyadenylate-binding protein, putative [Babesia equi]
Length = 663
Score = 86.3 bits (212), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 50/58 (86%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QKQM+GERLFP++ R P+LAGKITGM+LEIDNAELL +LE + LK+K++EA+ VL+
Sbjct: 603 QKQMIGERLFPIVARDNPDLAGKITGMMLEIDNAELLALLEDDARLKAKIDEAIRVLK 660
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 30/49 (61%), Positives = 38/49 (77%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
G S+GFGFVCFS PEEATKA+ M+ +I+ KPLYV LA++KE R + L
Sbjct: 349 GVSRGFGFVCFSRPEEATKAIAGMHLKIVKGKPLYVGLAEKKEQRLSRL 397
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 37/60 (61%), Gaps = 2/60 (3%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQYM 58
+ EDG+ + F FV F+ PE A +AV +NG + GS+PL V Q K R+A L SQY+
Sbjct: 240 IKEDGKGRKFAFVNFAEPEMAKEAVEALNGTKLEEGSEPLLVCPHQDKAKRQAFLKSQYI 299
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 21/50 (42%), Positives = 34/50 (68%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
M E+G SKG+GFV + + E A +A+ ++NG +IG K + V+ +K+DR
Sbjct: 152 MDENGVSKGYGFVHYDTEESAKEAIEKVNGMVIGGKKVEVSPFIKKQDRD 201
>gi|323448247|gb|EGB04148.1| hypothetical protein AURANDRAFT_70409 [Aureococcus anophagefferens]
Length = 616
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 38/57 (66%), Positives = 48/57 (84%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
G S+GFGFVCFSSPEEA KAVTEMN +++ KP++VALAQRKE R+A L +Q+ QR+
Sbjct: 330 GTSRGFGFVCFSSPEEAAKAVTEMNNKLVLGKPIFVALAQRKEVRRAQLEAQHAQRL 386
Score = 42.0 bits (97), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 18/48 (37%), Positives = 29/48 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
E GRS+G+G+V + S + AT A+ ++N I K +YV R+ +R
Sbjct: 135 DEAGRSQGYGYVHYESEDAATDAINKINSMTICDKEVYVGHFVRRTER 182
>gi|302408078|ref|XP_003001874.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
gi|261359595|gb|EEY22023.1| polyadenylate-binding protein [Verticillium albo-atrum VaMs.102]
Length = 555
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+PE+ATKAV +MN R+I +KPLYVALAQRK+ RK L Q +Q M
Sbjct: 225 GKSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQL-EQSIQARNQM 283
Query: 65 RMQ 67
RMQ
Sbjct: 284 RMQ 286
>gi|361128049|gb|EHL00002.1| putative Polyadenylate-binding protein, cytoplasmic and nuclear
[Glarea lozoyensis 74030]
Length = 783
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 47/102 (46%), Positives = 64/102 (62%)
Query: 192 PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYP 251
PG P G+ P G+ +G + LAAA P +QKQ+LGE LFP IQ M P
Sbjct: 657 PGGFPPQNARGMPPQGPGMPQAGSEGGASVLQAQLAAAGPGQQKQVLGEALFPKIQAMQP 716
Query: 252 ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
ELAGKITGMLLE++N EL+ ++E +L++KV+EA+ V +
Sbjct: 717 ELAGKITGMLLEMENPELVNLIEDESALRNKVDEALTVYDEY 758
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 34/55 (61%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ G+S+GFGFV F + E A AV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 279 DTGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSY 333
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A++A+ +NG ++ K ++V K+DR KA+
Sbjct: 184 DESGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFT 243
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 244 NIYVKNI 250
>gi|390597906|gb|EIN07305.1| polyadenylate binding protein [Punctularia strigosozonata HHB-11173
SS5]
Length = 668
Score = 85.9 bits (211), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 41/75 (54%), Positives = 60/75 (80%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
S++LA A P EQKQM+GE L+ I P+LAGKITGMLLE++NAEL+++L+++++L+SK
Sbjct: 587 SSVLANASPMEQKQMIGEMLYMRIAPAQPDLAGKITGMLLEMENAELIHLLDNDDALQSK 646
Query: 283 VEEAVAVLQAHQAKQ 297
V EA+AVL + K+
Sbjct: 647 VGEAIAVLHEYTQKE 661
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 27/70 (38%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRS+GFGFV F + EEA KAV ++ + L+V+ AQ+K +R+ L Y Q
Sbjct: 267 DEEGRSRGFGFVNFETHEEAQKAVDTLHDSDFKGRKLFVSRAQKKSEREEELRRSYEQ-- 324
Query: 62 ANMRMQQMGQ 71
+M++M +
Sbjct: 325 --AKMEKMSK 332
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 34/58 (58%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E GRSKG+GFV + + E A A+ +NG ++ K +YV K+DR+A L Q Q
Sbjct: 174 DEMGRSKGYGFVHYETNEAAESAIKAVNGMLLNDKKVYVGHHVSKKDRQAKLDEQKKQ 231
>gi|346974495|gb|EGY17947.1| polyadenylate-binding protein [Verticillium dahliae VdLs.17]
Length = 759
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 42/63 (66%), Positives = 50/63 (79%), Gaps = 1/63 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+PE+ATKAV +MN R+I +KPLYVALAQRK+ RK L Q +Q M
Sbjct: 429 GKSKGFGFVCFSNPEDATKAVADMNQRMIDNKPLYVALAQRKDVRKNQL-EQSIQARNQM 487
Query: 65 RMQ 67
RMQ
Sbjct: 488 RMQ 490
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV F++ E A++AV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 276 DQEGKSRGFGFVNFTTHEAASQAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSY 331
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 183 DEHGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 242
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 243 NVYVKNI 249
>gi|440638008|gb|ELR07927.1| hypothetical protein GMDG_02786 [Geomyces destructans 20631-21]
Length = 805
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 41/68 (60%), Positives = 52/68 (76%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
L A P +QKQ+LGE LFP IQ M PELAGKITGMLLE+DNAEL+ ++E SL++KV+E
Sbjct: 711 LTTAPPAQQKQLLGEALFPKIQVMQPELAGKITGMLLEMDNAELVGLIEDESSLRAKVDE 770
Query: 286 AVAVLQAH 293
A+ V +
Sbjct: 771 ALTVYDEY 778
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+++GFGFV F + E A+ AV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 277 DEAGKNRGFGFVNFINHEHASAAVDELNGKDFMGQDLYVGRAQKKHEREEELRKSY 332
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A++A+ +NG ++ K ++V K+DR KA+
Sbjct: 184 DESGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFT 243
Query: 55 SQYMQRI-ANMRMQQMGQLFQ 74
+ Y++ I A+ Q +LF+
Sbjct: 244 NIYVKNIPADATDDQFRELFE 264
>gi|425772940|gb|EKV11320.1| Polyadenylate-binding protein [Penicillium digitatum PHI26]
gi|425781989|gb|EKV19920.1| Polyadenylate-binding protein [Penicillium digitatum Pd1]
Length = 736
Score = 85.5 bits (210), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 57/78 (73%), Gaps = 1/78 (1%)
Query: 217 GQEPLTST-MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEH 275
G EP ++ L AA P +QKQMLGE L+P IQ PELAGKITGMLLE+DNAELL +L+
Sbjct: 631 GGEPASANQALLAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLLDD 690
Query: 276 NESLKSKVEEAVAVLQAH 293
E+L+ KV+EA+ V +
Sbjct: 691 EEALRGKVDEALNVYDEY 708
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+DG+S+GFGFV +++ E A AV EMN + + ++ LYV AQ+K +R+ L QY
Sbjct: 260 DQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKTQKLYVGRAQKKHEREEELRKQY 315
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 167 DEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 226
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 227 NIYIKNI 233
>gi|327299218|ref|XP_003234302.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
gi|326463196|gb|EGD88649.1| polyadenylate-binding protein [Trichophyton rubrum CBS 118892]
Length = 781
Score = 85.1 bits (209), Expect = 3e-14, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 60/90 (66%), Gaps = 8/90 (8%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EA+KAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 439 GKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQAR-NTI 497
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYG 94
R QQ+ + G P + QP FYG
Sbjct: 498 RQQQV------AAAAGMAQPFM-QPAVFYG 520
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV FS E A+ AV +N + + LYV AQ+K +R+ L QY
Sbjct: 274 NETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQY 329
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 180 DEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 239
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 240 NIYVKNV 246
>gi|426247620|ref|XP_004023599.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Ovis aries]
Length = 383
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 39/56 (69%), Positives = 46/56 (82%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
M E+GRSKGFG +CFSS EEATKA+TEMNGRI+GSKPL +ALAQ+ +RK SQ
Sbjct: 320 MQEEGRSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIALAQKPXERKTFCISQ 375
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A +AV EMNG+ I + L+V AQ+K +R+A L + Q
Sbjct: 222 GKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQ 276
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D S+G+ FV F + A +A+ EMNG ++ L+V + ++DR+A ++
Sbjct: 125 MSDDHGSRGYAFVHFQNQIAADRAIEEMNGTLLKDCRLFVGRFKSRKDREAEFQNK-AHE 183
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 184 FTNVYIKNFGD 194
>gi|315052346|ref|XP_003175547.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
gi|311340862|gb|EFR00065.1| hypothetical protein MGYG_03072 [Arthroderma gypseum CBS 118893]
Length = 782
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 60/90 (66%), Gaps = 8/90 (8%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EA+KAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 442 GKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQAR-NTI 500
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYG 94
R QQ+ + G P + QP FYG
Sbjct: 501 RQQQV------AAAAGMAQPFM-QPAVFYG 523
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV FS E A+ AV +N + + LYV AQ+K +R+ L QY
Sbjct: 274 NETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHEREEELRKQY 329
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 180 DEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 239
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ + ++ ++ LF+
Sbjct: 240 NIYVKNVEQDVTDEEFRSLFE 260
>gi|326478130|gb|EGE02140.1| polyadenylate-binding protein [Trichophyton equinum CBS 127.97]
Length = 782
Score = 85.1 bits (209), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 60/90 (66%), Gaps = 8/90 (8%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EA+KAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQAR-NTI 498
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYG 94
R QQ+ + G P + QP FYG
Sbjct: 499 RQQQV------AAAAGMAQPFM-QPAVFYG 521
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV FS E A+ AV +N + + LYV AQ+K +R+ L QY
Sbjct: 274 NETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQY 329
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 180 DEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 239
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 240 NIYVKNV 246
>gi|213409529|ref|XP_002175535.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
gi|212003582|gb|EEB09242.1| polyadenylate-binding protein [Schizosaccharomyces japonicus
yFS275]
Length = 621
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 40/67 (59%), Positives = 51/67 (76%), Gaps = 1/67 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+ +SKGFGFVC+S+PEEATKA+ EMN R++ KPLYVALAQRKE R++ L +Q R
Sbjct: 387 DENNKSKGFGFVCYSNPEEATKAIAEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQAR- 445
Query: 62 ANMRMQQ 68
R+QQ
Sbjct: 446 NQFRLQQ 452
Score = 82.4 bits (202), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 50/115 (43%), Positives = 69/115 (60%), Gaps = 12/115 (10%)
Query: 196 PQAQIGGIQPAAAGVQAVHVQGQEP------------LTSTMLAAAQPQEQKQMLGERLF 243
PQ G P A + V+G +P LT+ LA A + +KQM+GE L+
Sbjct: 506 PQYGAPGAYPGVAPAEVPAVEGDKPADAPTEAALPARLTAEDLARAPEENRKQMIGEFLY 565
Query: 244 PLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQA 298
P + ELAGKITGMLLE+DN+ELL +LE++ L KV+EA+AVL+ + AK+A
Sbjct: 566 PKVYVREEELAGKITGMLLEMDNSELLELLENDGMLNEKVDEALAVLREYAAKEA 620
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 40/67 (59%), Gaps = 4/67 (5%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+ +GF FV F++ + A +AV E+N K LYV AQ+K +R+ L QY Q M
Sbjct: 287 GKFRGFAFVNFATHDSAQQAVDELNDFEYKGKKLYVGRAQKKHERQEELRKQYEQ----M 342
Query: 65 RMQQMGQ 71
+++++ +
Sbjct: 343 KLEKINK 349
Score = 46.2 bits (108), Expect = 0.020, Method: Compositional matrix adjust.
Identities = 24/82 (29%), Positives = 43/82 (52%), Gaps = 8/82 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHL 53
+ E G SKG+GFV F S + A A+ +NG ++ K +YV + DR KA+
Sbjct: 190 VDELGNSKGYGFVHFDSVDSANAAIEHVNGMLLNDKKVYVGHHISRRDRQSKFEALKANF 249
Query: 54 ASQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ + + ++ +LF+
Sbjct: 250 TNVYVKNLDLDTTEEEFTKLFE 271
>gi|23197794|gb|AAN15424.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
Length = 379
Score = 84.7 bits (208), Expect = 4e-14, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 48/55 (87%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+GFGFV +S+PEEA +A++EMNG++IG KPLY+ALAQRKEDR+AHL + + Q
Sbjct: 88 GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQ 142
>gi|366999420|ref|XP_003684446.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
gi|357522742|emb|CCE62012.1| hypothetical protein TPHA_0B03420 [Tetrapisispora phaffii CBS 4417]
Length = 579
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 57/135 (42%), Positives = 72/135 (53%), Gaps = 23/135 (17%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SK FGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 368 NEEGKSKNFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 426
Query: 62 ANMRMQQM------------GQLFQPGSTGGYFVPTLPQPQRFYGPTQ------MTQIRP 103
+R QQ GQ QP G +P P+ F GP Q R
Sbjct: 427 NQLRYQQATAAAAAAAAGMPGQFMQPMFYG--VMP--PRGVPFNGPNSPMGAVPRQQFRN 482
Query: 104 QPRWAAAPQMRPSGQ 118
P + PQ P G
Sbjct: 483 GPVYGVPPQGAPQGN 497
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 26/71 (36%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
+G+ +GFGF+ F + ++A KAV E+N + LYV AQ+K +R L QY R+
Sbjct: 267 EGKFRGFGFINFENHDDAAKAVEELNDLEFKGQKLYVGRAQKKYERLQELKKQYEASRLE 326
Query: 63 NMRMQQMGQLF 73
+ Q LF
Sbjct: 327 KLAKYQGVNLF 337
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/52 (42%), Positives = 32/52 (61%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
E G+SKGFGFV F A +AV +NG ++ + +YVA K+DR++ L
Sbjct: 172 DETGKSKGFGFVHFEEDNAAVEAVDAINGMMLNGREVYVAQHVSKKDRESKL 223
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 23/65 (35%), Positives = 40/65 (61%), Gaps = 2/65 (3%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE L+ + + E AGKITGM+L++ E++ +LE++E + EA A
Sbjct: 507 QKQRQALGEELYKRVSSKTSDEEAAGKITGMILDLPPQEVMPLLENDELFEQHFNEASAA 566
Query: 290 LQAHQ 294
++ +
Sbjct: 567 YESFK 571
>gi|302693014|ref|XP_003036186.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
gi|300109882|gb|EFJ01284.1| hypothetical protein SCHCODRAFT_66185 [Schizophyllum commune H4-8]
Length = 632
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 43/78 (55%), Positives = 57/78 (73%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT+ LAA P EQKQMLGE ++ I +P+LAGKITGMLLE+DNAELL +L+ +++
Sbjct: 555 LTAAQLAAVSPMEQKQMLGEVIYMRIAASHPDLAGKITGMLLEMDNAELLSLLDSPDAMA 614
Query: 281 SKVEEAVAVLQAHQAKQA 298
KV EA++VLQ K+A
Sbjct: 615 GKVNEALSVLQEFVTKEA 632
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+GRS+GFGFV + + EEA KAV +N + + L+V+ AQ+K +R+ L + Q
Sbjct: 261 DEEGRSRGFGFVNYETHEEAQKAVDNLNDKDFHGRKLFVSRAQKKAEREEELRKAHEQ 318
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K +YV +++R KA
Sbjct: 168 DEHGNSKGYGFVHYETAEAAENAIKNVNGMLLNDKKVYVGHHISRKERQSKIDEMKAQFT 227
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 228 NLYIKNI 234
>gi|412991277|emb|CCO16122.1| predicted protein [Bathycoccus prasinos]
Length = 620
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 48/56 (85%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G S+G FV FSSPEEAT+AVTE+NG+++G+KPLYVALAQRKEDR+ L +Q+ QR
Sbjct: 361 GVSRGSAFVAFSSPEEATRAVTELNGKMVGAKPLYVALAQRKEDRRMRLQAQFAQR 416
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 44/153 (28%), Positives = 74/153 (48%), Gaps = 14/153 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRI-IGSKPLYVALAQRKEDRKAHLASQY-MQ 59
EDG+SKGFGFVC+ +PE+A+KAV E++G+ K V AQ+K +R+A L +++ +
Sbjct: 254 DEDGKSKGFGFVCYETPEDASKAVEELDGKHGEEDKKWVVCRAQKKAEREAELKAKFEAE 313
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT 119
R M L+ G TL + + +G ++ MR +
Sbjct: 314 RRERMEKMAGANLYIKNLEDGADDETLRELFKEFGTITSCRV-----------MRDASGV 362
Query: 120 AQGFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
++G + F S A+ T + G + A+P+
Sbjct: 363 SRGSAFVA-FSSPEEATRAVTELNGKMVGAKPL 394
Score = 38.5 bits (88), Expect = 3.8, Method: Compositional matrix adjust.
Identities = 17/45 (37%), Positives = 28/45 (62%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
G SKG+GF+ F + A +A+ ++NG + K +YV QR+ +R
Sbjct: 168 GNSKGYGFIQFDTEAAAKEAIEKVNGMELNDKVVYVGPFQRRAER 212
>gi|9930616|gb|AAG02117.1|AF293840_1 poly(A) binding protein [Arabidopsis thaliana]
Length = 660
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 48/55 (87%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+GFGFV +S+PEEA +A++EMNG++IG KPLY+ALAQRKEDR+AHL + + Q
Sbjct: 369 GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQ 423
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+ G S+ FGFV F E A AV +MNG +G LYV AQ+K +R+ L ++ Q R
Sbjct: 263 DQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
Query: 61 IANMRMQQMGQLF 73
I Q L+
Sbjct: 323 INRFEKSQGANLY 335
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
M GRSKG+GFV F E A A+ ++NG ++ K ++V R+++R
Sbjct: 169 MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
>gi|15219945|ref|NP_173690.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
gi|12643628|sp|O64380.1|PABP3_ARATH RecName: Full=Polyadenylate-binding protein 3; Short=PABP-3;
Short=Poly(A)-binding protein 3
gi|2505869|emb|CAA72907.1| polyA binding protein PAB3 [Arabidopsis thaliana]
gi|15450820|gb|AAK96681.1| Strong similarity to poly(A)-binding protein (PABP5) [Arabidopsis
thaliana]
gi|332192163|gb|AEE30284.1| Polyadenylate-binding protein 3 [Arabidopsis thaliana]
Length = 660
Score = 84.7 bits (208), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 48/55 (87%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+GFGFV +S+PEEA +A++EMNG++IG KPLY+ALAQRKEDR+AHL + + Q
Sbjct: 369 GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQ 423
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+ G S+ FGFV F E A AV +MNG +G LYV AQ+K +R+ L ++ Q R
Sbjct: 263 DQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
Query: 61 IANMRMQQMGQLF 73
I Q L+
Sbjct: 323 INRFEKSQGANLY 335
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
M GRSKG+GFV F E A A+ ++NG ++ K ++V R+++R
Sbjct: 169 MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
>gi|255940906|ref|XP_002561222.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
gi|211585845|emb|CAP93573.1| Pc16g09030 [Penicillium chrysogenum Wisconsin 54-1255]
Length = 734
Score = 84.3 bits (207), Expect = 5e-14, Method: Compositional matrix adjust.
Identities = 42/68 (61%), Positives = 52/68 (76%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
L AA P +QKQMLGE L+P IQ PELAGKITGMLLE+DNAELL +L+ E+L+ KV+E
Sbjct: 639 LLAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNAELLGLLDDEEALRGKVDE 698
Query: 286 AVAVLQAH 293
A+ V +
Sbjct: 699 ALNVYDEY 706
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 38/56 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+DG+S+GFGFV +++ E A AV EMN + + S+ LYV AQ+K +R+ L QY
Sbjct: 260 DQDGKSRGFGFVNYANHESAEAAVAEMNEKEVKSQKLYVGRAQKKHEREEELRKQY 315
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 167 DEFANSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 226
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 227 NIYIKNI 233
>gi|225557655|gb|EEH05941.1| polyadenylate-binding protein [Ajellomyces capsulatus G186AR]
gi|240278336|gb|EER41843.1| polyadenylate-binding protein [Ajellomyces capsulatus H143]
gi|325096361|gb|EGC49671.1| polyadenylate-binding protein [Ajellomyces capsulatus H88]
Length = 784
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EA+KAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 429 GKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQAR-NTI 487
Query: 65 RMQQM 69
R QQ+
Sbjct: 488 RQQQV 492
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 33/55 (60%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+S+GFGFV F E A AV E+N + + LYV AQ+K +R+ L Q+
Sbjct: 272 ETGKSRGFGFVNFVKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQH 326
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 177 DEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 236
Query: 55 SQYMQRI-ANMRMQQMGQLFQ 74
+ Y++ + + ++ +LF+
Sbjct: 237 NVYVKNLDTEVSNEEFRELFE 257
>gi|154275140|ref|XP_001538421.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
gi|150414861|gb|EDN10223.1| polyadenylate-binding protein [Ajellomyces capsulatus NAm1]
Length = 732
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EA+KAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 429 GKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQAR-NTI 487
Query: 65 RMQQM 69
R QQ+
Sbjct: 488 RQQQV 492
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 32/55 (58%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+S+GFGF F E A AV E+N + + LYV AQ+K +R+ L Q+
Sbjct: 272 ETGKSRGFGFFYFLKHESAAAAVEELNDKEYKGQKLYVGRAQKKHEREEELRKQH 326
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 177 DEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 236
Query: 55 SQYMQRI-ANMRMQQMGQLFQ 74
+ Y++ + + ++ +LF+
Sbjct: 237 NVYVKNLDTEVSNEEFRELFE 257
>gi|45201218|ref|NP_986788.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|74691820|sp|Q74ZS6.1|PABP_ASHGO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|44986072|gb|AAS54612.1| AGR122Cp [Ashbya gossypii ATCC 10895]
gi|374110037|gb|AEY98942.1| FAGR122Cp [Ashbya gossypii FDAG1]
Length = 585
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 66/115 (57%), Gaps = 9/115 (7%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G S+GFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRKE R+ LA Q R
Sbjct: 356 DETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQAR- 414
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG--PTQMTQIRPQPRWAAAPQ 112
MR Q G G F+P P +YG P ++ P P+ A P+
Sbjct: 415 NQMRFQHANAAAAAAVAGLPGQFMP----PPMYYGGIPPRVPFQGPNPQMAGMPK 465
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G S+GFGFV F + +A A+ ++G ++ + +YVAL K+DR++ L + +
Sbjct: 160 DENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKL-EEVKAKF 218
Query: 62 ANMRMQQMGQ 71
N+ ++ + Q
Sbjct: 219 TNVYVKNIDQ 228
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+ +GFGFV F A KAV E+N + LYV AQ+K +R L QY
Sbjct: 255 EGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQY 308
>gi|226287551|gb|EEH43064.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb18]
Length = 761
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EA+KAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 430 GKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQAR-NTI 488
Query: 65 RMQQM 69
R QQ+
Sbjct: 489 RQQQV 493
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV F + + A AV ++N + + LYV AQ+K +R+ L Q+
Sbjct: 270 NETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQH 325
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 176 DEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 235
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ + + ++ +LF+
Sbjct: 236 NVYVKNLEPEVTNEEFRELFE 256
>gi|295674319|ref|XP_002797705.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
gi|226280355|gb|EEH35921.1| polyadenylate-binding protein [Paracoccidioides sp. 'lutzii' Pb01]
Length = 822
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EA+KAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 430 GKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQAR-NTI 488
Query: 65 RMQQM 69
R QQ+
Sbjct: 489 RQQQV 493
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/73 (53%), Positives = 54/73 (73%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
L +AA P +QKQMLGE ++P IQ PELAGKITGMLLE+DNAELL +++ + +L+
Sbjct: 697 LNLQAFSAAPPAQQKQMLGEAIYPKIQVQQPELAGKITGMLLEMDNAELLSLVDDDAALR 756
Query: 281 SKVEEAVAVLQAH 293
+KV+EA+ V +
Sbjct: 757 AKVDEAINVYDEY 769
Score = 48.5 bits (114), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV F + + A AV ++N + + LYV AQ+K +R+ L Q+
Sbjct: 270 NETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQH 325
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 176 DEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 235
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ + + ++ +LF+
Sbjct: 236 NVYVKNLEPEVTNEEFRELFE 256
>gi|297841929|ref|XP_002888846.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
gi|297334687|gb|EFH65105.1| hypothetical protein ARALYDRAFT_339396 [Arabidopsis lyrata subsp.
lyrata]
Length = 685
Score = 84.3 bits (207), Expect = 6e-14, Method: Compositional matrix adjust.
Identities = 36/57 (63%), Positives = 49/57 (85%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M+ G S+GFGFV +SSPEEA++A++EMNG++IG KPLYVA AQRKE+R+AHL + +
Sbjct: 374 MNSQGLSRGFGFVAYSSPEEASRALSEMNGKMIGRKPLYVAFAQRKEERRAHLQTLF 430
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 30/73 (41%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+ G S+ FGFV F SPE A AV +MNG +G LYV AQ+K +R+ L ++ Q R
Sbjct: 272 DQSGNSRSFGFVNFESPEAAAVAVEKMNGISLGEDVLYVGRAQKKSEREEELRRKFEQER 331
Query: 61 IANMRMQQMGQLF 73
I+ Q L+
Sbjct: 332 ISRFEKLQGSNLY 344
Score = 45.4 bits (106), Expect = 0.029, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
M GRSKG+GFV F E A A+ ++NG ++ K ++V R++DR
Sbjct: 178 MDAVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 226
>gi|168036104|ref|XP_001770548.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162678256|gb|EDQ64717.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 645
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 49/56 (87%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G+S+G GFV FSSP+EAT+AVTEMNG+++GSKPLYVALAQRKE+R+ L + + QR
Sbjct: 343 GQSRGSGFVAFSSPDEATRAVTEMNGKMVGSKPLYVALAQRKEERRNRLQAAFAQR 398
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SK FGFV F ++A KAV +NG+ K YV AQ+K +R+A L +++ Q
Sbjct: 237 DNEGKSKCFGFVNFEHADDAAKAVEALNGKKFDEKEWYVGRAQKKSEREAELRAKFEQ 294
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 19/64 (29%), Positives = 37/64 (57%), Gaps = 5/64 (7%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK-----AHLASQYMQ 59
G+SKG+GFV F E A A+ ++NG ++ K ++V R+++R + + Y++
Sbjct: 149 GQSKGYGFVQFEQEESAQTAIEKVNGMLLNDKQVFVGPFVRRQERDQSGVVSKFNNVYVK 208
Query: 60 RIAN 63
+A+
Sbjct: 209 NLAD 212
>gi|225678061|gb|EEH16345.1| polyadenylate-binding protein [Paracoccidioides brasiliensis Pb03]
Length = 755
Score = 84.0 bits (206), Expect = 7e-14, Method: Compositional matrix adjust.
Identities = 40/65 (61%), Positives = 51/65 (78%), Gaps = 1/65 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EA+KAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 430 GKSKGFGFVCFSNPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQAR-NTI 488
Query: 65 RMQQM 69
R QQ+
Sbjct: 489 RQQQV 493
Score = 48.1 bits (113), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV F + + A AV ++N + + LYV AQ+K +R+ L Q+
Sbjct: 270 NETGKSRGFGFVNFVNHDSAAAAVEDLNDKEYKGQKLYVGRAQKKHEREEELRKQH 325
Score = 45.4 bits (106), Expect = 0.030, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 176 DEFGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 235
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ + + ++ +LF+
Sbjct: 236 NVYVKNLEPEVTNEEFRELFE 256
>gi|170674510|gb|ACB30143.1| poly(A) RNA binding protein [Epichloe festucae]
Length = 739
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/85 (51%), Positives = 60/85 (70%), Gaps = 7/85 (8%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
L++A P +QKQ+LGE +FP IQ + ELAGKITGMLLE+DN EL+ ++E + +LK+KVEE
Sbjct: 650 LSSAPPAQQKQILGEVIFPKIQAINAELAGKITGMLLEMDNTELISLIEDDAALKAKVEE 709
Query: 286 AVAVLQAH-------QAKQAAVKKE 303
A+AV + QA+ KKE
Sbjct: 710 ALAVYDEYVKSQGTEQAEGGGAKKE 734
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+DG+S+GFGFV +++ E A KAV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 274 DQDGKSRGFGFVNYTTHESAYKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSY 329
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 181 DEHGNSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 240
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 241 NIYVKNV 247
>gi|345561329|gb|EGX44424.1| hypothetical protein AOL_s00193g6 [Arthrobotrys oligospora ATCC
24927]
Length = 744
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 46/56 (82%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G+SKGFGFVCFS+P+EA+KAV EMN R++ KPLYVALAQRK+ RK+ L + QR
Sbjct: 398 GKSKGFGFVCFSNPDEASKAVAEMNQRMVNGKPLYVALAQRKDVRKSQLEASIQQR 453
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E AT A+ +NG ++ K +YV K++R KA+
Sbjct: 173 DENGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVYVGHHIPKKERQSKFDEMKANFT 232
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 233 NVYVKNI 239
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ G S+GFGFV FSS E A AV ++ + + L+V AQ+K +R+ L QY
Sbjct: 268 DSGTSRGFGFVNFSSHEAAAAAVDALHETELKGQALFVGRAQKKHEREEELRKQY 322
>gi|389629168|ref|XP_003712237.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|158514092|sp|A4QUF0.1|PABP_MAGO7 RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|351644569|gb|EHA52430.1| polyadenylate-binding protein [Magnaporthe oryzae 70-15]
gi|440469069|gb|ELQ38192.1| polyadenylate-binding protein [Magnaporthe oryzae Y34]
gi|440487573|gb|ELQ67355.1| polyadenylate-binding protein [Magnaporthe oryzae P131]
Length = 762
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 56/70 (80%)
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
A P +QKQ+LGE +FP IQ ++PELAGKITGMLLE+DN EL+ ++E++ +L+SKV+EA+
Sbjct: 674 ADNPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEAL 733
Query: 288 AVLQAHQAKQ 297
AV + +Q
Sbjct: 734 AVYDDYVRQQ 743
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+S+GFGFV F+S E+A+KAV E+N + + LYV AQ+K +R+ L Y
Sbjct: 278 ETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSY 332
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A++A+ +NG ++ K +YV K+DR KA+
Sbjct: 183 DENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFT 242
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 243 NIYVKNI 249
>gi|322711066|gb|EFZ02640.1| poly(A) RNA binding protein [Metarhizium anisopliae ARSEF 23]
Length = 743
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/74 (54%), Positives = 57/74 (77%)
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
+ LA AQP +QKQ+LGE +FP IQ + ELAGKITGMLLE++N+EL+ ++E + +LK+KV
Sbjct: 652 SQLAGAQPAQQKQILGEIIFPKIQAINSELAGKITGMLLEMENSELVNLIEDDVALKAKV 711
Query: 284 EEAVAVLQAHQAKQ 297
+EA+AV + Q
Sbjct: 712 DEALAVYDEYVKSQ 725
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV F++ E A KAV E++G+ + LYV AQ+K +R+ L Y
Sbjct: 276 DQEGKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSY 331
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 183 DENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 242
Query: 55 SQYMQRIA 62
+ Y++ I+
Sbjct: 243 NIYIKNIS 250
>gi|335293857|ref|XP_003357073.1| PREDICTED: polyadenylate-binding protein 4-like [Sus scrofa]
Length = 370
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/45 (80%), Positives = 42/45 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+GRSKGFG +CFSSPEEATKA+TEMNGRI+GSKPL +ALAQ+
Sbjct: 325 MQEEGRSKGFGLICFSSPEEATKAMTEMNGRILGSKPLNIALAQK 369
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNG+ I + L+V AQ+K +R+A L + Q
Sbjct: 227 GKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQ 281
Score = 43.1 bits (100), Expect = 0.15, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D S+G+ FV F + A +A+ EMNG ++ L+V + ++DR+A L ++
Sbjct: 130 MSDDQGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKNRKDREAELQNK-ANE 188
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 189 FTNVYIKNFGD 199
>gi|67527154|ref|XP_661604.1| hypothetical protein AN4000.2 [Aspergillus nidulans FGSC A4]
gi|40740281|gb|EAA59471.1| conserved hypothetical protein [Aspergillus nidulans FGSC A4]
Length = 711
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 59/93 (63%), Gaps = 8/93 (8%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFSSP+EA+KAVTEMN R++ KPLYVALAQRK+ R++ L + R N+
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQAR-NNI 472
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQ 97
R QQ Y P + FYGP Q
Sbjct: 473 RQQQAAAAAG--MGQAYMAPAV-----FYGPGQ 498
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+S+GFGFV FS+ E A AV EMN + + S+ LYV AQ+K +R+ L QY
Sbjct: 257 DSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQY 312
Score = 44.7 bits (104), Expect = 0.048, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 164 DEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 223
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I + ++ +LF+
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFE 244
>gi|384251873|gb|EIE25350.1| polyadenylate binding protein [Coccomyxa subellipsoidea C-169]
Length = 681
Score = 83.6 bits (205), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 44/65 (67%), Positives = 57/65 (87%)
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P++QKQMLGERLFPL+QR+ PELAGKITGMLLE+DN+ELL +LE ++L +KV+EA+ VL
Sbjct: 603 PEQQKQMLGERLFPLVQRLQPELAGKITGMLLEMDNSELLLLLESPDALVAKVDEAITVL 662
Query: 291 QAHQA 295
+ H A
Sbjct: 663 KQHNA 667
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+SKGFGF+ F E A AVT +NG+ I K LY AQ+K +R+A L ++
Sbjct: 247 DEAGKSKGFGFINFEDAEGAHAAVTALNGKEIDGKELYCGRAQKKAEREAELKQKF 302
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 44/75 (58%), Gaps = 5/75 (6%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA-LAQRKE---DRKAHLASQYMQR 60
G SKG+GFV + E A A+ ++NG ++ K ++V +R E D++ H + +++
Sbjct: 160 GNSKGYGFVHYEKEEAAQLAIEKVNGMLLEGKKVFVGPFLKRTERPVDKEQHYTNVFVKN 219
Query: 61 IA-NMRMQQMGQLFQ 74
++ N+ +++ ++F
Sbjct: 220 LSENLTDEEVEKMFN 234
>gi|413918856|gb|AFW58788.1| hypothetical protein ZEAMMB73_448418 [Zea mays]
Length = 212
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 50/128 (39%), Positives = 74/128 (57%), Gaps = 23/128 (17%)
Query: 171 PASVSAAGRQTGGYNK--YPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
PA AG Y+ +PVR+ P AQIG + ++ LA
Sbjct: 83 PAMPGVAGGMIQAYDMGGFPVRDAALSPAAQIGTL-------------------TSALAN 123
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
A P++Q+ +LGE L+PL++++ P A K+TGMLLE+D E+L++LE ++LKSKV EA+
Sbjct: 124 ANPEQQRTILGENLYPLVEQLEPNQAAKVTGMLLEMDQTEVLHLLESPDALKSKVAEAMD 183
Query: 289 VLQ--AHQ 294
VL+ AHQ
Sbjct: 184 VLRNVAHQ 191
>gi|145349140|ref|XP_001418998.1| predicted protein [Ostreococcus lucimarinus CCE9901]
gi|144579228|gb|ABO97291.1| predicted protein [Ostreococcus lucimarinus CCE9901]
Length = 572
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 37/57 (64%), Positives = 49/57 (85%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
G S+G FV FSSP+EAT+AVTEMNG+++G+KPLYVALAQRKE+R+ L +Q+ QR+
Sbjct: 355 GVSRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRKEERRMRLQAQFAQRM 411
Score = 73.9 bits (180), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 35/72 (48%), Positives = 55/72 (76%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
+ ++ L+AA P +Q+ +LGE L+PLI+ A KITGMLLE+D +E+L+++E ++L
Sbjct: 495 ILASQLSAAAPDQQRMILGEALYPLIESKDAANAAKITGMLLEMDQSEVLHLIESPDALT 554
Query: 281 SKVEEAVAVLQA 292
SKV+EA+AVL+A
Sbjct: 555 SKVQEALAVLKA 566
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G+SKGFGFVC+ PE A AV +++G K V AQ+K +R+A L +++ Q
Sbjct: 249 DEEGKSKGFGFVCYEEPEGAAAAVEKLDGYTEDEKTWVVCRAQKKAEREAELKAKFDQE- 307
Query: 62 ANMRMQQM 69
RM++M
Sbjct: 308 RRERMEKM 315
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR----KAHLASQ 56
M G SKG+GFV F + E A A+ +NG + K +YV QR+ +R +A +
Sbjct: 158 MDGQGNSKGYGFVQFETQEAAQAAIDNVNGMELNDKQVYVGPFQRRAERSNTGEAKFNNV 217
Query: 57 YMQRIA-NMRMQQMGQLF 73
Y++ ++ N+ +++ + F
Sbjct: 218 YVKNLSENLSDEKLREKF 235
>gi|429859146|gb|ELA33937.1| polyadenylate-binding protein [Colletotrichum gloeosporioides Nara
gc5]
Length = 688
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/71 (56%), Positives = 54/71 (76%)
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
AA P +QKQ+LGE +FP IQ M PELAGKITGMLLE++NAEL+ ++E +LK+KV+EA
Sbjct: 604 AAGNPGQQKQILGEVIFPKIQAMQPELAGKITGMLLEMENAELVNLIEDESALKAKVDEA 663
Query: 287 VAVLQAHQAKQ 297
+ V + + Q
Sbjct: 664 LGVYEEYIKNQ 674
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV F++ E A KAV ++N + + LYV AQ+K +R+ L Y
Sbjct: 249 DQEGKSRGFGFVNFTTHEAAAKAVEDLNNKDFRGQDLYVGRAQKKHEREEELRKSY 304
Score = 51.2 bits (121), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 156 DENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 215
Query: 55 SQYMQRIAN 63
+ Y++ IAN
Sbjct: 216 NVYVKNIAN 224
>gi|322698722|gb|EFY90490.1| poly(A) RNA binding protein [Metarhizium acridum CQMa 102]
Length = 742
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 56/72 (77%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA AQP +QKQ+LGE +FP IQ + ELAGKITGMLLE++N+EL+ ++E + +LK+KV+E
Sbjct: 653 LAGAQPAQQKQILGEIIFPKIQAINSELAGKITGMLLEMENSELVNLIEDDVALKAKVDE 712
Query: 286 AVAVLQAHQAKQ 297
A+AV + Q
Sbjct: 713 ALAVYDEYVKSQ 724
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV F++ E A KAV E++G+ + LYV AQ+K +R+ L Y
Sbjct: 275 DQEGKSRGFGFVNFTTHESAAKAVEELHGKDFRGQDLYVGRAQKKHEREEELRKSY 330
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 182 DENGNSKGYGFVHYETDEAAHQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 241
Query: 55 SQYMQRIA 62
+ Y++ I+
Sbjct: 242 NIYVKNIS 249
>gi|1616770|gb|AAB16848.1| putative poly(A)-binding protein FabM [Emericella nidulans]
Length = 705
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 48/93 (51%), Positives = 59/93 (63%), Gaps = 8/93 (8%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFSSP+EA+KAVTEMN R++ KPLYVALAQRK+ R++ L + R N+
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQAR-NNI 472
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQ 97
R QQ Y P + FYGP Q
Sbjct: 473 RQQQAAAAAG--MGQAYMAPAV-----FYGPGQ 498
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+S+GFGFV FS+ E A AV EMN + + S+ LYV AQ+K +R+ L QY
Sbjct: 257 DSEGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQY 312
Score = 44.7 bits (104), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 164 DEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 223
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I + ++ +LF+
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFE 244
>gi|68070939|ref|XP_677383.1| polyadenylate-binding protein [Plasmodium berghei strain ANKA]
gi|56497479|emb|CAH95361.1| polyadenylate-binding protein, putative [Plasmodium berghei]
Length = 833
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 48/58 (82%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QKQ+LGE LFPL+ +P LAGKITGM+LE+DN+ELL +LE+ + LK K++EA+ VLQ
Sbjct: 773 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEDQLKKKIDEALVVLQ 830
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M +D +SKGFGFVCF + EEA KAVTEM+ +II KPLYV LA+++E R + L ++
Sbjct: 439 MKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREHRLSRLQQRF 496
Score = 44.7 bits (104), Expect = 0.052, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH---LASQYM 58
E G+SK +GFV + E A +A+ ++NG +GSK +YV +K +R + + Y+
Sbjct: 138 DEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYV 197
Query: 59 QRIANMRMQ-QMGQLFQP-GSTGGYFVPTLPQPQRF 92
+ + + + QLF P G V + + ++F
Sbjct: 198 KNFPDTVTEAHLKQLFSPYGEITSMIVKSDNKNRKF 233
>gi|296815242|ref|XP_002847958.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
gi|238840983|gb|EEQ30645.1| polyadenylate-binding protein [Arthroderma otae CBS 113480]
Length = 708
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/90 (52%), Positives = 60/90 (66%), Gaps = 8/90 (8%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EA+KAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 368 GKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLEASIQAR-NTI 426
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYG 94
R QQ+ + G P + QP FYG
Sbjct: 427 RQQQV------AAAAGMPQPFM-QPAVFYG 449
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV FS E A+ AV +N + + LYV AQ+K +R+ L QY
Sbjct: 202 NETGKSRGFGFVNFSDHEAASAAVEGLNEYELKGQKLYVGRAQKKHEREEELRKQY 257
Score = 45.1 bits (105), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 108 DEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 167
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 168 NIYVKNV 174
>gi|3287682|gb|AAC25510.1| Strong similarity to gb|M97657 poly(A)-binding protein (PABP5) from
A. thaliana [Arabidopsis thaliana]
Length = 655
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 35/49 (71%), Positives = 45/49 (91%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
G S+GFGFV +S+PEEA +A++EMNG++IG KPLY+ALAQRKEDR+AHL
Sbjct: 369 GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHL 417
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+ G S+ FGFV F E A AV +MNG +G LYV AQ+K +R+ L ++ Q R
Sbjct: 263 DQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
Query: 61 IANMRMQQMGQLF 73
I Q L+
Sbjct: 323 INRFEKSQGANLY 335
Score = 43.1 bits (100), Expect = 0.17, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
M GRSKG+GFV F E A A+ ++NG ++ K ++V R+++R
Sbjct: 169 MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
>gi|310798668|gb|EFQ33561.1| 4 family polyadenylate binding protein [Glomerella graminicola
M1.001]
Length = 768
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 53/67 (79%)
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
A + P +QKQ+LGE +FP IQ + PELAGKITGMLLE+DNAEL+ ++E +LK+KV+EA
Sbjct: 684 AGSNPGQQKQILGEVIFPKIQAIQPELAGKITGMLLEMDNAELVNLIEDESALKAKVDEA 743
Query: 287 VAVLQAH 293
+ V + +
Sbjct: 744 LGVYEEY 750
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV F++ E A KAV ++NG+ + LYV AQ+K +R+ L Y
Sbjct: 279 DQEGKSRGFGFVNFTTHEAAAKAVDDLNGKDFRGQDLYVGRAQKKHEREEELRKSY 334
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/69 (36%), Positives = 40/69 (57%), Gaps = 7/69 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A++A+ +NG ++ K +YV K+DR KA+
Sbjct: 186 DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 245
Query: 55 SQYMQRIAN 63
+ Y++ IAN
Sbjct: 246 NIYVKNIAN 254
>gi|363753804|ref|XP_003647118.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
gi|356890754|gb|AET40301.1| hypothetical protein Ecym_5562 [Eremothecium cymbalariae
DBVPG#7215]
Length = 580
Score = 83.2 bits (204), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 47/95 (49%), Positives = 57/95 (60%), Gaps = 7/95 (7%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G S+GFGFVCFS+PEEATKA+TE N +++ KPLYVA+AQRKE R+ LA Q R
Sbjct: 356 DEAGSSRGFGFVCFSTPEEATKAITEKNQQLVAGKPLYVAIAQRKEVRRNQLAQQIQAR- 414
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG 94
MR Q G G F+P P +YG
Sbjct: 415 NQMRFQHANAAAAAAVAGLPGQFIP----PPMYYG 445
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/54 (38%), Positives = 31/54 (57%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+ +GFGF+ F A +AV E+N + LYV AQ+K +R+ L QY
Sbjct: 255 EGKLRGFGFINFEDHSTAARAVDELNESDFRGQTLYVGRAQKKHERQQELKKQY 308
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 25/80 (31%), Positives = 42/80 (52%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
++G S+GFGFV F + +A A+ +NG ++ + +YVA K+DR KA
Sbjct: 160 DDNGVSRGFGFVHFENESDARDAIEAVNGMLMNDQEVYVAWHVSKKDRQSKLEEVKAKFT 219
Query: 55 SQYMQRIA-NMRMQQMGQLF 73
+ Y++ I ++ QLF
Sbjct: 220 NIYVKNIDLETSQEEFEQLF 239
Score = 38.1 bits (87), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 42/67 (62%), Gaps = 8/67 (11%)
Query: 238 LGERLFPLIQRMY-----PELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
LGE+L+ Q+++ E AGKITGM+L++ +++ +LE+++ L+ +EA A +
Sbjct: 508 LGEQLY---QKVFAKTQDEEAAGKITGMILDLPPQQVIQLLENDDLLEQHFQEAHAAYKK 564
Query: 293 HQAKQAA 299
+A Q A
Sbjct: 565 FKADQEA 571
>gi|158512764|sp|A2Q848.1|PABP_ASPNC RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|134054831|emb|CAK43671.1| unnamed protein product [Aspergillus niger]
Length = 731
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 65/122 (53%), Gaps = 25/122 (20%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR--IA 62
G+SKGFGFVCFSSP+EA+KAVTEMN R++ KPLYVALAQRK+ R++ L + R I
Sbjct: 432 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIR 491
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQG 122
+ + QP Y QP FYGP Q I P GQ
Sbjct: 492 QQQAAAAAGMPQP-----YM-----QPAVFYGPGQQGFI-------------PGGQRGMA 528
Query: 123 FP 124
FP
Sbjct: 529 FP 530
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV FS+ E A AV EMN + I S+ LYV AQ+K +R+ L QY
Sbjct: 269 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQY 324
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 176 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 235
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 236 NVYIKNL 242
>gi|400597582|gb|EJP65312.1| polyadenylate-binding protein [Beauveria bassiana ARSEF 2860]
Length = 736
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 40/72 (55%), Positives = 55/72 (76%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
++ A P +QKQMLGE +FP IQ + ELAGKITGMLLE+DN+EL+ ++E + +LKSKV+E
Sbjct: 652 ISGAPPAQQKQMLGEMIFPKIQAINGELAGKITGMLLEMDNSELINLIEDDAALKSKVDE 711
Query: 286 AVAVLQAHQAKQ 297
A+AV + Q
Sbjct: 712 ALAVYDEYVKTQ 723
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+DG+S+GFGFV F++ E A KAV E+N + + + LYV AQ+K +R+ L Y
Sbjct: 271 QDGKSRGFGFVNFTTHEAAAKAVEELNNKDLHGQELYVGRAQKKHEREEELRKSY 325
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 177 DENGSSKGYGFVHYETDEAAQQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 236
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I+ + + +LF+
Sbjct: 237 NVYVKNISPEVTDDEFRELFE 257
>gi|330938161|ref|XP_003305701.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
gi|311317207|gb|EFQ86241.1| hypothetical protein PTT_18612 [Pyrenophora teres f. teres 0-1]
Length = 749
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 46/56 (82%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G+SKGFGFVCFS+P+EATKAVTEMN ++I +KPLYVALAQRK+ RK L + R
Sbjct: 423 GKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKNQLEATIQAR 478
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ G+S+GFGFV + E A+ AV +N + LYV AQ+K +R+ L QY
Sbjct: 263 DDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQY 318
Score = 41.2 bits (95), Expect = 0.64, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K++R KA+
Sbjct: 170 DELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFT 229
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 230 NIYVKNI 236
>gi|390460450|ref|XP_002745401.2| PREDICTED: polyadenylate-binding protein 4-like [Callithrix
jacchus]
Length = 384
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 46/58 (79%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYM 58
M E+G+SKGFG +CFSSPE+A KA+TEMNGRI+GSKPL +ALAQ E R H S ++
Sbjct: 325 MQEEGQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALAQCSELRLCHYTSAWV 382
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++VA AQ+K +R+A L + Q
Sbjct: 227 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAELKQMFEQ 281
Score = 45.4 bits (106), Expect = 0.035, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 41/70 (58%), Gaps = 1/70 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F + A +A+ EMNG+++ ++V + ++DR+A L S+
Sbjct: 130 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRKDREAELRSK-ASE 188
Query: 61 IANMRMQQMG 70
N+ ++ G
Sbjct: 189 FTNVYIKNFG 198
>gi|302658195|ref|XP_003020804.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
gi|291184669|gb|EFE40186.1| hypothetical protein TRV_05080 [Trichophyton verrucosum HKI 0517]
Length = 816
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 48/55 (87%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFVCFS+P+EA+KAVTEMN R++ KPLYVALAQRK+ RK+ ++++ +
Sbjct: 456 GKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQVSTKVIH 510
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV FS E A+ AV +N + + LYV AQ+K +R+ L QY
Sbjct: 290 NETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQY 345
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 196 DEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 255
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 256 NIYVKNV 262
>gi|50306049|ref|XP_452986.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
gi|74690315|sp|Q6CSV3.1|PABP_KLULA RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|49642119|emb|CAH01837.1| KLLA0C17600p [Kluyveromyces lactis]
Length = 592
Score = 82.8 bits (203), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++G SKGFGFVCFSSPEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 368 DQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 426
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYG 94
+R QQ Q + G +P PQ FYG
Sbjct: 427 NQIRFQQQQQQQAAAAAAG--MPGQYMPQMFYG 457
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G+ KGFGFV F A KAV E+NG+ S+ LYV AQ+K +R L QY Q
Sbjct: 267 EGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQ---- 322
Query: 64 MRMQQMGQL 72
R++++ +
Sbjct: 323 YRLEKLAKF 331
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHL 53
+ E+G S+GFGFV F +A A+ +NG ++ +YVA+ K+DR KA+
Sbjct: 171 LDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANF 230
Query: 54 ASQYMQRI-ANMRMQQMGQLF 73
+ Y++ I ++ QLF
Sbjct: 231 TNIYVKNIDVETTDEEFEQLF 251
Score = 38.9 bits (89), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 235 KQMLGERLFPLIQRMYPE--LAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
+Q LGE+L+ + + AGKITGM+L++ +++ +L+++E + + +EA+A +
Sbjct: 524 RQALGEQLYKKVSAKIDDENAAGKITGMILDLPPQQVIQLLDNDEQFEQQFQEALAAYEN 583
Query: 293 HQAKQAA 299
+ +Q A
Sbjct: 584 FKKEQEA 590
>gi|334183839|ref|NP_177322.2| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|334183841|ref|NP_001185373.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|322510110|sp|Q05196.3|PABP5_ARATH RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|332197109|gb|AEE35230.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
gi|332197110|gb|AEE35231.1| Polyadenylate-binding protein 5 [Arabidopsis thaliana]
Length = 682
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 48/59 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M+ G S+GFGFV +S+PEEA A+ EMNG++IG KPLYVALAQRKE+R+AHL S + Q
Sbjct: 375 MNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQ 433
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+ G S+ FGFV F SPE A AV +MNG +G LYV AQ+K DR+ L ++ Q R
Sbjct: 273 DQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 332
Query: 61 IANMRMQQMGQLF 73
I+ Q L+
Sbjct: 333 ISRFEKLQGSNLY 345
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
M GRSKG+GFV F E A A+ ++NG ++ K ++V R++DR
Sbjct: 179 MDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 227
>gi|395856757|ref|XP_003800785.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Otolemur garnettii]
Length = 359
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 39/62 (62%), Positives = 48/62 (77%), Gaps = 1/62 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK-EDRKAHLASQYMQ 59
M E G+SKGFG +CFSS EEATKA+TEMNG I+GSKPL +ALA R +RK +L QY+Q
Sbjct: 296 MQEGGQSKGFGLICFSSLEEATKAMTEMNGHILGSKPLSIALAHRHYXERKIYLTRQYLQ 355
Query: 60 RI 61
+
Sbjct: 356 YV 357
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F + E A KAV EMNG+ I + ++V AQ+K +R+A L + Q
Sbjct: 198 GKSKGFGFVSFDNHEAAKKAVKEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQ 252
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
MS+D SKG+ FV F + A +A+ EMNGR + ++V + ++DR+A L ++
Sbjct: 101 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGRQLKDCKVFVGRFKNRKDREAELRNK 156
>gi|166786|gb|AAA32832.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 668
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 48/59 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M+ G S+GFGFV +S+PEEA A+ EMNG++IG KPLYVALAQRKE+R+AHL S + Q
Sbjct: 361 MNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQ 419
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+ G S+ FGFV F SPE A AV +MNG +G LYV AQ+K DR+ L ++ Q R
Sbjct: 259 DQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 318
Query: 61 IANMRMQQMGQLF 73
I+ Q L+
Sbjct: 319 ISRFEKLQGSNLY 331
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
M GRSKG+GFV F E A A+ ++NG ++ K ++V R++DR
Sbjct: 165 MDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 213
>gi|7239504|gb|AAF43230.1|AC012654_14 Identical to the polyadenylate-binding protein 5 (PAB5) from
Arabidopsis thaliana gb|M97657 [Arabidopsis thaliana]
Length = 668
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 48/59 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M+ G S+GFGFV +S+PEEA A+ EMNG++IG KPLYVALAQRKE+R+AHL S + Q
Sbjct: 361 MNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQ 419
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+ G S+ FGFV F SPE A AV +MNG +G LYV AQ+K DR+ L ++ Q R
Sbjct: 259 DQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 318
Query: 61 IANMRMQQMGQLF 73
I+ Q L+
Sbjct: 319 ISRFEKLQGSNLY 331
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
M GRSKG+GFV F E A A+ ++NG ++ K ++V R++DR
Sbjct: 165 MDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 213
>gi|405967468|gb|EKC32623.1| Polyadenylate-binding protein 1 [Crassostrea gigas]
Length = 104
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/65 (55%), Positives = 52/65 (80%)
Query: 216 QGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEH 275
Q ++ LT+ M+A+ P +QKQM GERLFPLI ++ P+ AGK+TGM+LEIDN++L ++LE
Sbjct: 10 QSKDRLTTVMVASVPPDQQKQMFGERLFPLISKICPDYAGKVTGMMLEIDNSDLPHILES 69
Query: 276 NESLK 280
ESL+
Sbjct: 70 RESLE 74
>gi|2213871|gb|AAB61594.1| poly(A)-binding protein, partial [Mesembryanthemum crystallinum]
Length = 176
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 57/69 (82%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+T+LA A P++Q+ +LGE L+PL++++ PE+A K+TGMLLE+D E+L++LE E+LKSK
Sbjct: 78 ATLLANATPEQQRLLLGENLYPLVEQLEPEMAAKVTGMLLEMDQTEVLHLLESPEALKSK 137
Query: 283 VEEAVAVLQ 291
V EA+ VL+
Sbjct: 138 VAEAMEVLR 146
>gi|326474523|gb|EGD98532.1| polyadenylate-binding protein [Trichophyton tonsurans CBS 112818]
Length = 676
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 50/111 (45%), Positives = 71/111 (63%), Gaps = 9/111 (8%)
Query: 188 PVRNPGTQPQ--AQIGGIQPAAAGVQAVHVQGQEPLTSTMLA---AAQPQEQKQMLGERL 242
P PG PQ Q GG P G+ A+ ++PL S +LA AA +QKQMLGE +
Sbjct: 544 PSGRPGQFPQFPGQQGGRAPGQGGIHAM----KQPLRSIILAVFNAAPESQQKQMLGEAI 599
Query: 243 FPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+P I PELAGKITGMLLE+DN+EL+ +++ + +L++KV+EA+ V +
Sbjct: 600 YPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEALTVYDEY 650
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 36/51 (70%), Positives = 45/51 (88%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLAS 55
G+SKGFGFVCFS+P+EA+KAVTEMN R++ KPLYVALAQRK+ RK+ L +
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVTEMNQRMVHGKPLYVALAQRKDVRKSQLET 490
Score = 50.8 bits (120), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV FS E A+ AV +N + + LYV AQ+K +R+ L QY
Sbjct: 274 NETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQY 329
Score = 44.7 bits (104), Expect = 0.049, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 180 DEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 239
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ + ++ ++ LF+
Sbjct: 240 NIYVKNVEQDVTDEEFRGLFE 260
>gi|189190886|ref|XP_001931782.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
gi|187973388|gb|EDU40887.1| polyadenylate-binding protein [Pyrenophora tritici-repentis
Pt-1C-BFP]
Length = 704
Score = 82.4 bits (202), Expect = 2e-13, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 46/56 (82%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G+SKGFGFVCFS+P+EATKAVTEMN ++I +KPLYVALAQRK+ RK L + R
Sbjct: 420 GKSKGFGFVCFSNPDEATKAVTEMNQKMIENKPLYVALAQRKDVRKNQLEATIQAR 475
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ G+S+GFGFV + E A+ AV +N + LYV AQ+K +R+ L QY
Sbjct: 263 DDQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQY 318
Score = 41.6 bits (96), Expect = 0.50, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K++R KA+
Sbjct: 170 DELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFT 229
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I ++ + LF+
Sbjct: 230 NIYVKNIDLDVSDEDFRDLFE 250
>gi|169622264|ref|XP_001804541.1| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
gi|187608896|sp|Q0U1G2.3|PABP_PHANO RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|160704734|gb|EAT78222.2| hypothetical protein SNOG_14351 [Phaeosphaeria nodorum SN15]
Length = 744
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 45/56 (80%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G+SKGFGFVCFS+P+EATKAVTEMN ++I KPLYVALAQRK+ RK L + R
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQAR 477
Score = 45.1 bits (105), Expect = 0.042, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ G+S+GFGFV + E A AV +N + LYV AQ+K +R+ L QY
Sbjct: 263 DDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQY 318
Score = 41.6 bits (96), Expect = 0.42, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K++R KA+
Sbjct: 170 DELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFT 229
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I ++ + +LF+
Sbjct: 230 NIYVKNIDLDVTDEDFRELFE 250
>gi|380488221|emb|CCF37528.1| hypothetical protein CH063_08839 [Colletotrichum higginsianum]
Length = 170
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 38/67 (56%), Positives = 52/67 (77%)
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
A P +QKQ+LGE +FP IQ + PELAGKITGMLLE+DNAEL+ ++E +LK+KV+EA
Sbjct: 86 AGGNPGQQKQILGEVIFPKIQAIQPELAGKITGMLLEMDNAELVNLIEDESALKAKVDEA 145
Query: 287 VAVLQAH 293
+ V + +
Sbjct: 146 LGVYEEY 152
>gi|385281386|gb|AFI57844.1| polyA binding protein, partial [Cocos nucifera]
Length = 352
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 48/56 (85%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G S+G GFV F SP++A+KA+ EMNG++IGSKPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 186 NGVSRGSGFVAFQSPDDASKALAEMNGKMIGSKPLYVALAQRKEDRRARLQAQFSQ 241
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F PE A KAV E+NG+ K YV AQ+K +R+ L ++ QR+
Sbjct: 83 DGKSKCFGFVNFEDPEHAAKAVKELNGKKFDGKEWYVGKAQKKSEREMELKGRFEQRM 140
>gi|342879464|gb|EGU80711.1| hypothetical protein FOXB_08751 [Fusarium oxysporum Fo5176]
Length = 794
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 46/56 (82%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G+SKGFGFVCFS+P++ATKAV EMN R+I +KPLYVALAQRK+ RK+ L + R
Sbjct: 431 GKSKGFGFVCFSNPDDATKAVAEMNQRMINNKPLYVALAQRKDVRKSQLEASIQAR 486
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 38/56 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV F++ E A+KAV ++NG+ + LYV AQ+K +R+ L Y
Sbjct: 274 DQEGKSRGFGFVNFTTHESASKAVDDLNGKDFHGQDLYVGRAQKKHEREEELRKSY 329
Score = 50.1 bits (118), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A++A+ +NG ++ K +YV K+DR KA+
Sbjct: 181 DENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 240
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ IA ++ +LF+
Sbjct: 241 NVYVKNIAPDVTEDDFRELFE 261
>gi|338722679|ref|XP_001915947.2| PREDICTED: LOW QUALITY PROTEIN: poly(A) binding protein,
cytoplasmic 4-like [Equus caballus]
Length = 397
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 35/44 (79%), Positives = 41/44 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E+GRSKGFG +CFSSPEEAT+A+TEMNGRI+GSKPL +ALAQ
Sbjct: 325 MKEEGRSKGFGLICFSSPEEATRAMTEMNGRILGSKPLNIALAQ 368
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNG+ I + L+V AQ+K +R+A L + Q
Sbjct: 227 GKSKGFGFVSFYSHEAAQKAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQ 281
Score = 43.9 bits (102), Expect = 0.089, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D S+G+ FV F + A +A+ EMNG ++ L+V + ++DR+A L ++
Sbjct: 130 MSDDQGSRGYAFVHFQNQMAADRAIEEMNGALLKDCRLFVGRFKNRQDREAELQNK-ANE 188
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 189 FTNIYIKNFGD 199
>gi|297847300|ref|XP_002891531.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
gi|297337373|gb|EFH67790.1| PAB8 binding protein 8 [Arabidopsis lyrata subsp. lyrata]
Length = 669
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 39/76 (51%), Positives = 59/76 (77%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+T LA A P++Q+ MLGE L+PL++++ PE A K+TGMLLE+D E+L++LE E+LK+K
Sbjct: 576 ATQLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAK 635
Query: 283 VEEAVAVLQAHQAKQA 298
V EA+ VL++ +QA
Sbjct: 636 VTEAMDVLRSVAQQQA 651
Score = 54.3 bits (129), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+SKGFGFV F + ++A +AV +NG+ K +V AQ+K +R+ L ++ Q +
Sbjct: 254 EGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSL 311
Score = 40.8 bits (94), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 20/75 (26%), Positives = 43/75 (57%), Gaps = 6/75 (8%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLASQYMQ 59
G+SKG+GFV + + E A +A+ ++NG ++ K +YV K R K + Y++
Sbjct: 164 GQSKGYGFVQYDTDEAAQRAIDKLNGMLLNDKQVYVGPFVHKLQRDPSGEKVKFTNVYVK 223
Query: 60 RIA-NMRMQQMGQLF 73
++ ++ +++ ++F
Sbjct: 224 NLSESLSDEELNKVF 238
>gi|294461458|gb|ADE76290.1| unknown [Picea sitchensis]
Length = 313
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 47/55 (85%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G SKG GFV FSSP+EA++A+ EMNG+I+ SKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 6 GHSKGSGFVAFSSPDEASRALAEMNGKIVVSKPLYVALAQRKEERRARLQAQFSQ 60
>gi|302754900|ref|XP_002960874.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
gi|302767436|ref|XP_002967138.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300165129|gb|EFJ31737.1| hypothetical protein SELMODRAFT_10868 [Selaginella moellendorffii]
gi|300171813|gb|EFJ38413.1| hypothetical protein SELMODRAFT_21095 [Selaginella moellendorffii]
Length = 619
Score = 82.0 bits (201), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 55/119 (46%), Positives = 73/119 (61%), Gaps = 16/119 (13%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKG GFV +S+PEEA +A EMNG++IGSKP+YVA+AQRKE+R+A L +Q+ Q + +
Sbjct: 320 GQSKGSGFVAYSAPEEANRATIEMNGKMIGSKPIYVAMAQRKEERRAKLQAQFAQMRSPV 379
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYG--PTQMTQIRPQPRWAAAPQ----MRPSG 117
+ ++ PG+ P L Q Q FYG P M PQP A Q MRP G
Sbjct: 380 GVATTMPMYHPGA------PGLGQ-QLFYGQPPALMP---PQPAGFAYQQQMLGMRPGG 428
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 29/58 (50%), Positives = 39/58 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
DG+SK FGFV F +P+EA KAV +NG+ I K YV AQ+K +R+A L ++Y Q
Sbjct: 214 DSDGKSKCFGFVNFENPDEAAKAVVGLNGKKIEDKEWYVGRAQKKSEREAELRAKYEQ 271
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 31/49 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+G+SKG+GFV F E A A+ ++NG ++ K ++V R+++R+
Sbjct: 126 DSNGQSKGYGFVQFEQEESAQVAIDKVNGMLVAEKQVFVGPFVRRQERE 174
>gi|147838149|emb|CAN74140.1| hypothetical protein VITISV_008914 [Vitis vinifera]
Length = 544
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 47/63 (74%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G SKGFGFVCFS+P+EA+KAV +G + KPLYVA+AQRKEDR+A L Y QR+
Sbjct: 348 DQKGISKGFGFVCFSTPDEASKAVNTFHGYMFHRKPLYVAIAQRKEDRQAQLQLHYAQRM 407
Query: 62 ANM 64
A +
Sbjct: 408 AGL 410
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 42/59 (71%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
E+G S+GFGFV F SPE+A +A+ +NG +GSK LYVA AQ+K +R+ L Q+ ++
Sbjct: 245 DENGMSRGFGFVNFESPEDAKRALEALNGLQLGSKVLYVARAQKKAEREQLLRRQFEEK 303
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 24/49 (48%), Positives = 32/49 (65%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
++EDG+SKG+GFV F S E A A+ ++NG II K +Y RK DR
Sbjct: 153 VTEDGKSKGYGFVQFESEEYANAAIEKLNGFIIDGKQIYAGKFVRKTDR 201
>gi|451854943|gb|EMD68235.1| hypothetical protein COCSADRAFT_270468 [Cochliobolus sativus
ND90Pr]
Length = 749
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 45/56 (80%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G+SKGFGFVCFS+P+EATKAVTEMN ++I KPLYVALAQRK+ RK L + R
Sbjct: 421 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQAR 476
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+S+GFGFV + E A+ AV +N + LYV AQ+K +R+ L QY
Sbjct: 263 DEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQY 318
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K++R KA+
Sbjct: 170 DELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFT 229
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I ++ ++ +LF+
Sbjct: 230 NIYVKNIDLDVSDEEFRELFE 250
>gi|406867457|gb|EKD20495.1| 4 family polyadenylate binding protein [Marssonina brunnea f. sp.
'multigermtubi' MB_m1]
Length = 785
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/68 (55%), Positives = 53/68 (77%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
L+A P +QKQ+LGE LFP IQ + PELAGKITGMLLE++N EL+ ++E + +L+SKV+E
Sbjct: 694 LSAVPPAQQKQLLGEALFPKIQVLQPELAGKITGMLLEMENQELVNLIEDDSALRSKVDE 753
Query: 286 AVAVLQAH 293
A+ V +
Sbjct: 754 ALTVYDEY 761
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++ +S+GFGFV F + E A KAV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 278 TDSNKSRGFGFVNFINHEHAAKAVDELNGKDFKGQDLYVGRAQKKHEREEELRKSY 333
Score = 44.3 bits (103), Expect = 0.061, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 38/67 (56%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A++A+ +NG ++ K ++V K+DR KA+
Sbjct: 184 DETGASKGYGFVHYETDEAASQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFT 243
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 244 NIYVKNI 250
>gi|452001105|gb|EMD93565.1| hypothetical protein COCHEDRAFT_1096208 [Cochliobolus
heterostrophus C5]
Length = 749
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 45/56 (80%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G+SKGFGFVCFS+P+EATKAVTEMN ++I KPLYVALAQRK+ RK L + R
Sbjct: 421 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQAR 476
Score = 47.4 bits (111), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 32/56 (57%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+S+GFGFV + E A+ AV +N + LYV AQ+K +R+ L QY
Sbjct: 263 DEQGKSRGFGFVNYIKHEAASAAVDALNDTDFRGQKLYVGRAQKKHEREEELRKQY 318
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K++R KA+
Sbjct: 170 DELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFT 229
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I ++ ++ +LF+
Sbjct: 230 NIYVKNIDLDVSDEEFRELFE 250
>gi|168018573|ref|XP_001761820.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686875|gb|EDQ73261.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 439
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 37/55 (67%), Positives = 48/55 (87%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKG GFV FSSP+EAT+AVTEMNG+++G+KPLYVALAQRKE+R+ L + + Q
Sbjct: 343 GQSKGSGFVAFSSPDEATRAVTEMNGKMVGNKPLYVALAQRKEERRMRLQAAFAQ 397
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
DG+SK FGFV F P++A KAV + G+ K YV AQ+K +R+A L +++ Q
Sbjct: 237 DNDGKSKCFGFVNFEHPDDAAKAVEALQGKKFDEKEWYVGRAQKKSEREAELRAKFEQ 294
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 38/65 (58%), Gaps = 5/65 (7%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK-----AHLASQYMQ 59
G+SKG+GFV F E A A+ ++NG ++ K ++V R+++R + + Y++
Sbjct: 149 GQSKGYGFVQFEQEESAQNAIEKVNGMLLNDKQVFVGPFVRRQERDQAGGVSKFNNVYVK 208
Query: 60 RIANM 64
+A++
Sbjct: 209 NLADV 213
>gi|358346231|ref|XP_003637173.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355503108|gb|AES84311.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 622
Score = 81.6 bits (200), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 35/53 (66%), Positives = 46/53 (86%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
GRSKG GFV F++PEEA+KA+ EMNG+IIG KP+YV++AQRKE+RKA L + +
Sbjct: 341 GRSKGVGFVAFTTPEEASKAIDEMNGKIIGQKPVYVSVAQRKEERKAQLQAHF 393
Score = 47.0 bits (110), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%), Gaps = 1/59 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQ 59
E+G SK FGFV F S + A AV ++NG K L+V AQ+K +R+A L + + Q
Sbjct: 234 DENGNSKRFGFVNFQSSDSAATAVEKLNGSTTNDGKVLFVGRAQKKSEREAELKAFFEQ 292
Score = 45.8 bits (107), Expect = 0.025, Method: Compositional matrix adjust.
Identities = 22/76 (28%), Positives = 43/76 (56%), Gaps = 2/76 (2%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA-HLASQYMQ 59
M +G SKG GFV F + + A A+ +++GR++ K +YV R ++R + + Y++
Sbjct: 146 MDSNGHSKGHGFVQFDNDQSAKNAIEKLDGRLMNDKKVYVGYFVRCQERSSPKFTNVYVK 205
Query: 60 RIA-NMRMQQMGQLFQ 74
++ + + + QLF
Sbjct: 206 NLSESYTNEDLKQLFN 221
>gi|384493509|gb|EIE84000.1| hypothetical protein RO3G_08705 [Rhizopus delemar RA 99-880]
Length = 624
Score = 81.3 bits (199), Expect = 4e-13, Method: Compositional matrix adjust.
Identities = 38/60 (63%), Positives = 47/60 (78%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQMLGERL+PLI PE AGKITGMLLE+DN ELL +LE +++L K+ E + VL+AH
Sbjct: 550 QKQMLGERLYPLINAQQPEFAGKITGMLLEMDNGELLNLLEDSKALDGKINEPMEVLKAH 609
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 45/152 (29%), Positives = 68/152 (44%), Gaps = 13/152 (8%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
++G+SKGFGFV F + E+A KAV +N K LYVA AQ+K +R+ L QY Q +
Sbjct: 259 DDEGKSKGFGFVNFENHEDAQKAVDALNETEHKGKILYVARAQKKTEREEELRKQYEQAK 318
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
+ + Q L+ L Q YG ++ M T+
Sbjct: 319 LEKLAKYQGVNLYIKNLDDDIDDEKLRQEFSVYGVITSAKV-----------MCDEKDTS 367
Query: 121 QGFPNIPQFRSAPRASTGQTVIRGANMSARPI 152
+GF + F S A+ T + G + ++PI
Sbjct: 368 KGFGFVC-FSSPDEATKAVTEMNGRMIGSKPI 398
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G SKG+GFV + + E A A+ +NG ++ K +YV K++R+A + Q+ +
Sbjct: 165 LDESGNSKGYGFVHYETEEAADNAIKHVNGMLLNDKKVYVGRHVPKKERQAKI-EQFRAK 223
Query: 61 IANMRMQQMGQ 71
N+ ++ + +
Sbjct: 224 FTNVYVKNLDE 234
>gi|449446375|ref|XP_004140947.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 48/59 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ + G SKG GFV FSSP+EATKA+ EMNG++ G KPLYVA+AQRKE+RKA L +Q+ Q
Sbjct: 350 LDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQ 408
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIG-SKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SK FGFV F + + A AV +++G ++G K LYV AQRK +R+A L +++ Q
Sbjct: 247 DSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELKAKFEQ 305
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ +G+SKG+GFV F S E A ++ ++NG ++ K +YV R ++R SQ+
Sbjct: 156 VDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQF 212
>gi|449494063|ref|XP_004159436.1| PREDICTED: polyadenylate-binding protein 3-like [Cucumis sativus]
Length = 652
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 48/59 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+ + G SKG GFV FSSP+EATKA+ EMNG++ G KPLYVA+AQRKE+RKA L +Q+ Q
Sbjct: 350 LDQHGLSKGSGFVAFSSPDEATKALNEMNGKMKGRKPLYVAVAQRKEERKARLQAQFAQ 408
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 39/59 (66%), Gaps = 1/59 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIG-SKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SK FGFV F + + A AV +++G ++G K LYV AQRK +R+A L +++ Q
Sbjct: 247 DSNGKSKCFGFVNFQNTDSAAAAVEKLDGTVLGDDKTLYVGRAQRKAEREAELRAKFEQ 305
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ +G+SKG+GFV F S E A ++ ++NG ++ K +YV R ++R SQ+
Sbjct: 156 VDSNGQSKGYGFVQFESEESAEISIEKLNGMLLNDKQVYVGHFIRHQERIRANGSQF 212
>gi|259515737|sp|P0CB38.1|PAB4L_HUMAN RecName: Full=Polyadenylate-binding protein 4-like;
Short=PABP-4-like; Short=Poly(A)-binding protein 4-like
Length = 370
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 42/45 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+SKGFG +CFSSPE+ATKA+TEMNGRI+GSKPL +ALAQR
Sbjct: 325 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++V AQ+K +R+A L + Q
Sbjct: 227 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 281
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
MS+D SKG+ FV F + A +A+ EMNG+++ ++V + ++DR+A L S+
Sbjct: 130 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
>gi|119625554|gb|EAX05149.1| hCG1647909 [Homo sapiens]
Length = 369
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 42/45 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+SKGFG +CFSSPE+ATKA+TEMNGRI+GSKPL +ALAQR
Sbjct: 325 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369
Score = 58.9 bits (141), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++V AQ+K +R+A L + Q
Sbjct: 227 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 281
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
MS+D SKG+ FV F + A +A+ EMNG+++ ++V + ++DR+A L S+
Sbjct: 130 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
>gi|299473651|emb|CBN78045.1| poly(A) binding protein [Ectocarpus siliculosus]
Length = 688
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 38/62 (61%), Positives = 48/62 (77%)
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
+QK M+GERL+PLI P LAGKITGMLLE+DN ELL++LE +SL +K+ EA+ VL
Sbjct: 623 KQKNMIGERLYPLIYEGQPALAGKITGMLLEMDNGELLHLLESPDSLAAKINEALQVLSE 682
Query: 293 HQ 294
HQ
Sbjct: 683 HQ 684
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 38/69 (55%), Gaps = 8/69 (11%)
Query: 8 KGFGFVCFSSPEEATKAVTEMNGRII----GSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+GFGFV F E A KA+ +N + G+ LY A AQ+K +R L S++ Q
Sbjct: 273 RGFGFVNFEEHESAVKAIEALNNAEMPDGEGTTTLYCARAQKKSERARELQSKHDQ---- 328
Query: 64 MRMQQMGQL 72
++M++M +
Sbjct: 329 VKMERMNKF 337
>gi|71745456|ref|XP_827358.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|4104919|gb|AAD13337.1| poly(A) binding protein I [Trypanosoma brucei]
gi|70831523|gb|EAN77028.1| poly(A)-binding protein 1 [Trypanosoma brucei brucei strain 927/4
GUTat10.1]
gi|261331563|emb|CBH14557.1| PABP2 [Trypanosoma brucei gambiense DAL972]
Length = 555
Score = 81.3 bits (199), Expect = 5e-13, Method: Compositional matrix adjust.
Identities = 59/141 (41%), Positives = 82/141 (58%), Gaps = 17/141 (12%)
Query: 156 STMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRN---PGTQPQAQIGGIQPAAAGVQA 212
STMG GGPM+ GP ++ R G + P+++ P Q QI QP A
Sbjct: 426 STMG--MGGPMRPMGPTPMNQV-RARPGPQRPPMQSMMAPQQQSHPQIP--QPPVA---- 476
Query: 213 VHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYM 272
QGQ ST+LA+ P +QK +LGERL+ I R P A K+TGMLLE+DN+E+L +
Sbjct: 477 ---QGQN--LSTVLASMTPDQQKNVLGERLYNYIVRNNPSFAAKVTGMLLEMDNSEILNL 531
Query: 273 LEHNESLKSKVEEAVAVLQAH 293
L+++ L +KV+EA+ VL H
Sbjct: 532 LDNHSLLDTKVQEALDVLNRH 552
Score = 42.0 bits (97), Expect = 0.34, Method: Compositional matrix adjust.
Identities = 47/153 (30%), Positives = 66/153 (43%), Gaps = 39/153 (25%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRI-IGSKPLYVALAQRKEDRKAHLASQYMQRIANMR 65
S+ FGFV F A +A+ E++G +G +PL+V+ A RK+ R+ L R R
Sbjct: 328 SRCFGFVSFKEQSSAAQAIQELHGSTALGPRPLFVSYALRKDARRQTLEDM---RNKQPR 384
Query: 66 MQQMG-------------QLFQPGS--TGGYFV----PTLPQ------PQRFYGPTQMTQ 100
M+Q P + G +F+ P +P P R GPT M Q
Sbjct: 385 MRQPPMGGLMGGMMGPQLSFMNPPAMFNGMHFMNTRMPMMPSTMGMGGPMRPMGPTPMNQ 444
Query: 101 IRPQPRWAAAPQMRPSGQTA-----QGFPNIPQ 128
+R +P PQ RP Q+ Q P IPQ
Sbjct: 445 VRARP----GPQ-RPPMQSMMAPQQQSHPQIPQ 472
>gi|255080002|ref|XP_002503581.1| predicted protein [Micromonas sp. RCC299]
gi|226518848|gb|ACO64839.1| predicted protein [Micromonas sp. RCC299]
Length = 597
Score = 81.3 bits (199), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 39/60 (65%), Positives = 49/60 (81%), Gaps = 1/60 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR-IAN 63
G S+G FV FSS +EAT+AVTEMNG++ G+KPLYVALAQRKEDR+ L +Q+ QR +AN
Sbjct: 338 GASRGSAFVAFSSADEATRAVTEMNGKMAGTKPLYVALAQRKEDRRMRLQAQFAQRAVAN 397
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 37/55 (67%), Gaps = 1/55 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNG-RIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+SKGFGFVCF E A++AV +++G I K V AQ+K +R+A L +++
Sbjct: 233 EGKSKGFGFVCFEESEAASEAVEKLDGYDKIEDKAWVVCRAQKKAEREAELKAKF 287
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 19/45 (42%), Positives = 30/45 (66%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
G SKG+GFV F+ E A +A+ ++NG ++ K +YV QR+ +R
Sbjct: 145 GVSKGYGFVQFAEQEAAQQAIDKVNGMLLNDKQVYVGPFQRRGER 189
>gi|397485813|ref|XP_003814033.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Pan paniscus]
Length = 427
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 42/45 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+SKGFG +CFSSPE+ATKA+TEMNGRI+GSKPL +ALAQR
Sbjct: 382 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 426
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++V AQ+K +R+A L + Q
Sbjct: 284 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 338
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F + A +A+ EMNG+++ ++V + ++DR+A L S+ +
Sbjct: 187 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE- 245
Query: 61 IANMRMQQMG 70
N+ ++ G
Sbjct: 246 FTNIYIKNFG 255
>gi|332820240|ref|XP_526690.3| PREDICTED: polyadenylate-binding protein 4-like [Pan troglodytes]
Length = 428
Score = 80.9 bits (198), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 42/45 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+SKGFG +CFSSPE+ATKA+TEMNGRI+GSKPL +ALAQR
Sbjct: 383 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++V AQ+K +R+A L + Q
Sbjct: 285 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F + A +A+ EMNG+++ ++V + ++DR+A L S+ +
Sbjct: 188 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE- 246
Query: 61 IANMRMQQMG 70
N+ ++ G
Sbjct: 247 FTNIYIKNFG 256
>gi|426345476|ref|XP_004040437.1| PREDICTED: polyadenylate-binding protein 4-like [Gorilla gorilla
gorilla]
Length = 428
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 42/45 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+SKGFG +CFSSPE+ATKA+TEMNGRI+GSKPL +ALAQR
Sbjct: 383 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++V AQ+K +R+A L + Q
Sbjct: 285 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F + A +A+ EMNG+++ ++V + ++DR+A L S+ +
Sbjct: 188 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE- 246
Query: 61 IANMRMQQMG 70
N+ ++ G
Sbjct: 247 FTNIYIKNFG 256
>gi|291084655|ref|NP_001108206.2| polyadenylate-binding protein 4-like [Homo sapiens]
Length = 428
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 42/45 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+SKGFG +CFSSPE+ATKA+TEMNGRI+GSKPL +ALAQR
Sbjct: 383 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++V AQ+K +R+A L + Q
Sbjct: 285 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F + A +A+ EMNG+++ ++V + ++DR+A L S+ +
Sbjct: 188 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE- 246
Query: 61 IANMRMQQMG 70
N+ ++ G
Sbjct: 247 FTNVYIKNFG 256
>gi|440893983|gb|ELR46563.1| Polyadenylate-binding protein 4-like protein [Bos grunniens mutus]
Length = 370
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 41/45 (91%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+GRSKGFG +CFSS EEATKA+TEMNGRI+GSKPL +ALAQ+
Sbjct: 325 MQEEGRSKGFGLICFSSAEEATKAMTEMNGRILGSKPLNIALAQK 369
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A +AV EMNG+ I + L+V AQ+K +R+A L + Q
Sbjct: 227 GKSKGFGFVSFDSHEAAKRAVEEMNGKDINGQLLFVGRAQKKAERQAELKQMFEQ 281
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 21/71 (29%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D S+G+ FV F + A +A+ EMNG ++ L+V + ++DR+A ++
Sbjct: 130 MSDDHGSRGYAFVHFQNQIAADRAIEEMNGALLKDCRLFVGRFKSRKDREAEFQNK-AHE 188
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 189 FTNVYIKNFGD 199
>gi|297674344|ref|XP_002815190.1| PREDICTED: polyadenylate-binding protein 4-like [Pongo abelii]
Length = 428
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 42/45 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+SKGFG +CFSSPE+ATKA+TEMNGRI+GSKPL +ALAQR
Sbjct: 383 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++V AQ+K +R+A L + Q
Sbjct: 285 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F + A +A+ EMNG+++ ++V + ++DR+A L S+ +
Sbjct: 188 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE- 246
Query: 61 IANMRMQQMG 70
N+ ++ G
Sbjct: 247 FTNIYIKNFG 256
>gi|67623121|ref|XP_667843.1| poly(a)-binding protein fabm [Cryptosporidium hominis TU502]
gi|54659004|gb|EAL37605.1| poly(a)-binding protein fabm [Cryptosporidium hominis]
Length = 746
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 49/61 (80%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQ+LGERLFP+I + PELAGKITGM+LE+DN ELL +L + +K+KV+EA+ VL+
Sbjct: 681 QKQLLGERLFPIIAQFQPELAGKITGMMLEMDNNELLELLSSDIEIKNKVDEAMVVLERA 740
Query: 294 Q 294
Q
Sbjct: 741 Q 741
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
E G S+GFGFV F SP+EATKA+TEM+ +++ KPLYV L +RKE R L
Sbjct: 397 DESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRL 448
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 32/46 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+G+S G+GF+ F + A +A++ +NG ++G +P+YV Q+K +R
Sbjct: 136 EGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAER 181
>gi|431899704|gb|ELK07658.1| Polyadenylate-binding protein 4-like protein [Pteropus alecto]
Length = 370
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 40/45 (88%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+GRSKGFG +CFSSPEEATKA+ EMNGRI+GSK L +ALAQR
Sbjct: 325 MKEEGRSKGFGLICFSSPEEATKAMVEMNGRILGSKSLNIALAQR 369
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/55 (50%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
GRSKGFGFV F S E A +AV MNG+ + +PL+V AQ+K +R+A L + Q
Sbjct: 227 GRSKGFGFVSFDSHEAAQRAVEIMNGKDLSGQPLFVGRAQKKAERQAELKLMFEQ 281
Score = 41.2 bits (95), Expect = 0.58, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D S+G+ FV F S A +A+ MNG ++ L+V + ++DR+A L ++
Sbjct: 130 MSDDAGSRGYAFVHFQSQTAADRAIEAMNGALLKGCRLFVGPFKNRKDRQAELQNK-ANE 188
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 189 FTNVYIKNFGD 199
>gi|396492663|ref|XP_003843853.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
gi|312220433|emb|CBY00374.1| hypothetical protein LEMA_P015040.1 [Leptosphaeria maculans JN3]
Length = 747
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 45/56 (80%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G+SKGFGFVCFS+P+EATKAVTEMN +++ KPLYVALAQRK+ RK L + R
Sbjct: 424 GKSKGFGFVCFSNPDEATKAVTEMNQKMLEGKPLYVALAQRKDVRKNQLEATIQAR 479
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 32/56 (57%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ G+S+GFGFV + E A+ AV +N + LYV AQ+K +R+ L QY
Sbjct: 262 DDQGKSRGFGFVNYIKHEAASVAVETLNDTEFHGQKLYVGRAQKKHEREEELRKQY 317
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K++R KA+
Sbjct: 169 DEHGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFT 228
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I ++ + LF+
Sbjct: 229 NIYVKNIDLDVTDDEFRDLFE 249
>gi|126649325|ref|XP_001388334.1| poly(a)-binding protein fabm [Cryptosporidium parvum Iowa II]
gi|32398879|emb|CAD98589.1| putative poly(a)-binding protein fabm, possible [Cryptosporidium
parvum]
gi|126117428|gb|EAZ51528.1| poly(a)-binding protein fabm, putative [Cryptosporidium parvum Iowa
II]
Length = 746
Score = 80.9 bits (198), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 49/61 (80%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQ+LGERLFP+I + PELAGKITGM+LE+DN ELL +L + +K+KV+EA+ VL+
Sbjct: 681 QKQLLGERLFPIIAQFQPELAGKITGMMLEMDNNELLELLSSDIEIKNKVDEAMVVLERA 740
Query: 294 Q 294
Q
Sbjct: 741 Q 741
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
E G S+GFGFV F SP+EATKA+TEM+ +++ KPLYV L +RKE R L
Sbjct: 397 DESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRL 448
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/46 (36%), Positives = 32/46 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+G+S G+GF+ F + A +A++ +NG ++G +P+YV Q+K +R
Sbjct: 136 EGKSLGYGFIHFEHADSAKEAISRLNGAVLGDRPIYVGKFQKKAER 181
>gi|332231054|ref|XP_003264711.1| PREDICTED: polyadenylate-binding protein 4-like [Nomascus
leucogenys]
Length = 428
Score = 80.5 bits (197), Expect = 8e-13, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 42/45 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+SKGFG +CFSSPE+ATKA+TEMNGRI+GSKPL +ALAQR
Sbjct: 383 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++V AQ+K +R+A L + Q
Sbjct: 285 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
Score = 47.0 bits (110), Expect = 0.010, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F + A +A+ EMNG+++ ++V + ++DR+A L S+ +
Sbjct: 188 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE- 246
Query: 61 IANMRMQQMG 70
N+ ++ G
Sbjct: 247 FTNIYIKNFG 256
>gi|323510419|dbj|BAJ78103.1| cgd6_3010 [Cryptosporidium parvum]
Length = 365
Score = 80.5 bits (197), Expect = 9e-13, Method: Compositional matrix adjust.
Identities = 37/61 (60%), Positives = 49/61 (80%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQ+LGERLFP+I + PELAGKITGM+LE+DN ELL +L + +K+KV+EA+ VL+
Sbjct: 300 QKQLLGERLFPIIAQFQPELAGKITGMMLEMDNNELLELLSSDIEIKNKVDEAMVVLERA 359
Query: 294 Q 294
Q
Sbjct: 360 Q 360
Score = 67.4 bits (163), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 38/52 (73%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
E G S+GFGFV F SP+EATKA+TEM+ +++ KPLYV L +RKE R L
Sbjct: 16 DESGVSRGFGFVSFLSPDEATKAITEMHLKLVRGKPLYVGLHERKEQRALRL 67
>gi|356521524|ref|XP_003529405.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 651
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/76 (50%), Positives = 58/76 (76%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+T LA A P++Q+ MLGE L+PL++++ P+ A K+TGMLLE+D E+L++LE E+LK+K
Sbjct: 558 ATALANASPEQQRTMLGENLYPLVEQLEPDNAAKVTGMLLEMDQTEVLHLLESPEALKAK 617
Query: 283 VEEAVAVLQAHQAKQA 298
V EA+ VL+ +QA
Sbjct: 618 VAEAMDVLRNVAQQQA 633
Score = 52.8 bits (125), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F + ++A +AV +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 246 DGKSKCFGFVNFENADDAARAVEALNGKNFDDKEWYVGKAQKKSERENELKQRFEQSM 303
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/47 (42%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK++R++
Sbjct: 156 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERES 202
>gi|336111798|gb|AEI16559.1| polyadenylate binding protein [Chelon labrosus]
Length = 79
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 47/72 (65%), Positives = 53/72 (73%), Gaps = 12/72 (16%)
Query: 189 VRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFP 244
VRNP +QPQ + QPA VHVQGQEPLT++MLAAA PQEQKQMLGERLFP
Sbjct: 8 VRNPQQHMASQPQVXMQ--QPA------VHVQGQEPLTASMLAAAPPQEQKQMLGERLFP 59
Query: 245 LIQRMYPELAGK 256
LIQ M+P LAG+
Sbjct: 60 LIQNMHPSLAGQ 71
>gi|225428865|ref|XP_002285190.1| PREDICTED: polyadenylate-binding protein 2 [Vitis vinifera]
gi|147839912|emb|CAN65906.1| hypothetical protein VITISV_004873 [Vitis vinifera]
Length = 648
Score = 80.1 bits (196), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+T LA A P EQ+ MLGE L+PL++++ PE+A K+TGMLLE+D E+L++LE ++LK+K
Sbjct: 559 ATALANAPPAEQRTMLGENLYPLVEQLEPEMAAKVTGMLLEMDQTEVLHLLESPDALKAK 618
Query: 283 VEEAVAVLQ 291
V EA+ VL+
Sbjct: 619 VAEAMEVLR 627
Score = 51.6 bits (122), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F + ++A +V +NG+ K YV AQ+K +R+ L S++ Q +
Sbjct: 245 DGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNM 302
Score = 44.3 bits (103), Expect = 0.064, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
G SKG GFV F S E A KA+ ++NG ++ K ++V RK++R++ + + +
Sbjct: 155 GMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNV 211
>gi|15228016|ref|NP_181204.1| poly(A) binding protein 7 [Arabidopsis thaliana]
gi|12229883|sp|Q9ZQA8.1|PABPX_ARATH RecName: Full=Probable polyadenylate-binding protein At2g36660;
Short=PABP; Short=Poly(A)-binding protein At2g36660
gi|4415911|gb|AAD20142.1| putative poly(A) binding protein [Arabidopsis thaliana]
gi|330254185|gb|AEC09279.1| poly(A) binding protein 7 [Arabidopsis thaliana]
Length = 609
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+SKGFGFVCFS+PEEA AV +G++ KPLYVA+AQ+KEDRK L Q+ R+
Sbjct: 338 DEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRV 397
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQM-RPSGQTA 120
R PG+ Y P T P + + P M + +
Sbjct: 398 -EARKSSSSASVNPGT---------------YAPLYYTNTHPGMVYQSYPLMWKSANMIG 441
Query: 121 QGFPN 125
+PN
Sbjct: 442 SSYPN 446
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 46/64 (71%)
Query: 236 QMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295
Q+LGE L PL++++ P+LA KITGMLLE+D +ELL +L+ E L +V+EA VL++ +
Sbjct: 527 QLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSSKT 586
Query: 296 KQAA 299
A
Sbjct: 587 NLTA 590
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+ +G+ FV F +PE+A +A +NG GSK LYV AQ+K +R+ L Q+ ++
Sbjct: 235 DENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKH 294
Query: 62 ANMRM 66
+M
Sbjct: 295 EEQKM 299
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
EDG+S+G+GFV F + A A+ +N I+ K +YV +K DR
Sbjct: 147 EDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR 193
>gi|297791101|ref|XP_002863435.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297309270|gb|EFH39694.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 341
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 58/127 (45%), Positives = 70/127 (55%), Gaps = 25/127 (19%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM-- 64
S+G GFV FS+PEEA++A+TEMNG++I +KPLYVALAQRKED KA L R NM
Sbjct: 106 SRGSGFVAFSTPEEASRAITEMNGKMIVTKPLYVALAQRKEDCKARLQ----MRPVNMPP 161
Query: 65 ----RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQMRPS 116
RM Q++ PG P + Q Q FYG I PQP + P MRP
Sbjct: 162 AVGPRM----QMYPPGG------PPMGQ-QLFYGQGPPAMIPPQPGFGYQQQLVPGMRPG 210
Query: 117 GQTAQGF 123
G F
Sbjct: 211 GSPMPNF 217
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 37/70 (52%), Positives = 56/70 (80%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+T LA A P++Q+ MLGE L+PL++++ PE A K+TGMLLE+D E+L++LE E+LK+K
Sbjct: 260 ATQLANAAPEQQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAK 319
Query: 283 VEEAVAVLQA 292
V EA+ VL++
Sbjct: 320 VTEAMDVLRS 329
>gi|294931122|ref|XP_002779765.1| Natural resistance-associated macrophage protein, putative
[Perkinsus marinus ATCC 50983]
gi|239889386|gb|EER11560.1| Natural resistance-associated macrophage protein, putative
[Perkinsus marinus ATCC 50983]
Length = 778
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 38/58 (65%), Positives = 49/58 (84%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QKQMLGE+L+ IQR+ P+LAGKITGM+LE+DN+ELL +LE L+SKV+EA+ VLQ
Sbjct: 719 QKQMLGEQLYTHIQRIQPQLAGKITGMMLEMDNSELLILLESESQLRSKVDEALMVLQ 776
>gi|262192741|gb|ACY30440.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 99
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 48/56 (85%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G SKG GFV FS+PEEA++A++EMNG+++ SKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 3 SGVSKGSGFVAFSTPEEASRALSEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 58
>gi|93359570|gb|ABF13311.1| poly-A binding protein, partial [Phaseolus vulgaris]
Length = 172
Score = 79.7 bits (195), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 47/56 (83%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G S+G GFV FS+PEEA++A+ EMNG+++ SKPLYV LAQRKEDR+A L +Q+ Q
Sbjct: 12 NGVSRGSGFVAFSTPEEASRALAEMNGKMVVSKPLYVTLAQRKEDRRARLQAQFAQ 67
>gi|297741250|emb|CBI32381.3| unnamed protein product [Vitis vinifera]
Length = 766
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 37/69 (53%), Positives = 55/69 (79%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+T LA A P EQ+ MLGE L+PL++++ PE+A K+TGMLLE+D E+L++LE ++LK+K
Sbjct: 677 ATALANAPPAEQRTMLGENLYPLVEQLEPEMAAKVTGMLLEMDQTEVLHLLESPDALKAK 736
Query: 283 VEEAVAVLQ 291
V EA+ VL+
Sbjct: 737 VAEAMEVLR 745
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F + ++A +V +NG+ K YV AQ+K +R+ L S++ Q +
Sbjct: 384 DGKSKCFGFVNFENVDDAAMSVEALNGQKFDDKEWYVGKAQKKSEREIELKSRFEQNM 441
Score = 43.9 bits (102), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 20/57 (35%), Positives = 34/57 (59%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
G SKG GFV F S E A KA+ ++NG ++ K ++V RK++R++ + + +
Sbjct: 294 GMSKGHGFVQFDSEEAAQKAIDKLNGMLLNDKQVFVGPFVRKQERESTINKEKFNNV 350
>gi|147785105|emb|CAN75447.1| hypothetical protein VITISV_030926 [Vitis vinifera]
Length = 632
Score = 79.7 bits (195), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/70 (51%), Positives = 55/70 (78%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++ LA+ P Q+ MLGE+LFPL++R+ E AGK+TGMLLE+D E+L+++E ++LK+K
Sbjct: 545 ASALASTTPDNQRLMLGEQLFPLVERIERETAGKVTGMLLEMDQTEVLHLIESPDALKNK 604
Query: 283 VEEAVAVLQA 292
V EA+ VL+A
Sbjct: 605 VAEAMDVLRA 614
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 33/60 (55%), Gaps = 1/60 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIG-SKPLYVALAQRKEDRKAHLASQYMQRIAN 63
G SK FGFV F S + A AV +NG K YV AQRK +R+A L +++ Q N
Sbjct: 255 GMSKCFGFVNFQSSDSAAAAVEHLNGATFNDDKVWYVGKAQRKSEREAELRAKFEQERKN 314
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 30/50 (60%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+ +G+SKG+GFV F E A A+ +NG +I K +YV L R ++R
Sbjct: 160 LDNNGQSKGYGFVQFEQEEAAQNAIKRLNGMLINDKQVYVGLFVRHQERN 209
>gi|356502327|ref|XP_003519971.1| PREDICTED: polyadenylate-binding protein 5-like [Glycine max]
Length = 616
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 47/56 (83%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+GRSKG+GFV FS+P A +A+ EMNG++IG +PLYVA+AQRKE+RKA L +Q+ Q
Sbjct: 324 NGRSKGYGFVAFSAPRNANRALHEMNGKMIGRRPLYVAVAQRKEERKALLEAQFSQ 379
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 40/60 (66%), Gaps = 2/60 (3%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIG-SKPLYVALAQRKEDRKAHLASQY-MQRI 61
DG+S+ FGFV F SP+ A AV +NG + K LYV AQRK +R+A L +++ ++RI
Sbjct: 220 DGKSRCFGFVNFESPDSAVAAVERLNGTTVNDDKVLYVGRAQRKAEREAELKARFELERI 279
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 20/45 (44%), Positives = 30/45 (66%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
G+SKG+GFV F + E A A+ E+NG +I K +YV L +++R
Sbjct: 130 GQSKGYGFVQFDNEESAQNAIKELNGMLINDKKVYVGLFVNRQER 174
>gi|449445890|ref|XP_004140705.1| PREDICTED: polyadenylate-binding protein 2-like [Cucumis sativus]
Length = 654
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 48/56 (85%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G S+G GFV FS+P+EA++A+ EMNG+++ SKPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 347 NGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQ 402
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
DG+S+ FGFV F + ++A +AV +NG+++ K YV AQ+K +R+ L ++ Q
Sbjct: 244 DGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQ 299
Score = 46.6 bits (109), Expect = 0.013, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+ G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK++R
Sbjct: 150 LDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERD 199
>gi|443895761|dbj|GAC73106.1| polyadenylate-binding protein [Pseudozyma antarctica T-34]
Length = 556
Score = 79.3 bits (194), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/54 (62%), Positives = 46/54 (85%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYM 58
G S+GFGFVC+S+PEEA KAV+EMNG+++ ++PLYVALAQRK+ R+ L +Q M
Sbjct: 366 GVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIM 419
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 49/64 (76%)
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P EQKQMLGE ++P + PELAGK+TGM+LE+ ELL++LE +E+L +KV EA+ VL
Sbjct: 475 PDEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVSEALEVL 534
Query: 291 QAHQ 294
+ +Q
Sbjct: 535 KEYQ 538
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV F + +EA AV E++ + L+VA AQ+K +R+ L Y
Sbjct: 260 DEDGKSKGFGFVNFENHDEAQTAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 315
>gi|378732913|gb|EHY59372.1| nucleolin [Exophiala dermatitidis NIH/UT8656]
Length = 779
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 45/92 (48%), Positives = 60/92 (65%), Gaps = 4/92 (4%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P+EA+KAV+EMN +++ KPLYVALAQRK+ R+ L + R
Sbjct: 440 GKSKGFGFVCFSNPDEASKAVSEMNQKMVNGKPLYVALAQRKDVRRNQLEASIQARNT-- 497
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQP-QRFYGP 95
++Q Q G GY PT+ P Q+F P
Sbjct: 498 -LRQQQQAAAAGMPQGYIQPTVFYPGQQFLPP 528
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E+G+S+GFGFV F+S E A KAV E+N + K LYV AQ+K +R+ L QY
Sbjct: 276 DENGKSRGFGFVNFASHESAAKAVEELNDKEFHGKKLYVGRAQKKHEREEELRRQY 331
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 45/82 (54%), Gaps = 8/82 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A +A+ +NG ++ K ++V K DR KA+
Sbjct: 183 DELGNSKGYGFVHYETAEAANQAIKSVNGMLLNDKKVFVGHHIAKRDRQSKLEEMKANFT 242
Query: 55 SQYMQRIA-NMRMQQMGQLFQP 75
+ Y++ I ++ ++ +LF+P
Sbjct: 243 NVYIKNIDESVSDEEFTKLFEP 264
>gi|449501704|ref|XP_004161443.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
2-like [Cucumis sativus]
Length = 576
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 48/56 (85%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G S+G GFV FS+P+EA++A+ EMNG+++ SKPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 269 NGISRGSGFVAFSTPDEASRALVEMNGKMVVSKPLYVALAQRKEDRRARLQAQFSQ 324
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 37/56 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
DG+S+ FGFV F + ++A +AV +NG+++ K YV AQ+K +R+ L ++ Q
Sbjct: 166 DGKSRCFGFVNFENADDAARAVDTLNGKLVDDKEWYVGKAQKKSEREVELKHRFEQ 221
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 20/50 (40%), Positives = 32/50 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+ G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK++R
Sbjct: 72 LDSSGQSKGYGFVQFDNEESALKAIEKLNGMLLNDKQVYVGPFLRKQERD 121
>gi|82595449|ref|XP_725855.1| hypothetical protein [Plasmodium yoelii yoelii 17XNL]
gi|23481012|gb|EAA17420.1| polyA binding protein-related [Plasmodium yoelii yoelii]
Length = 859
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 46/55 (83%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 288
QKQ+LGE LFPL+ +P LAGKITGM+LE+DN+ELL +LE+ + LK K++EA+A
Sbjct: 781 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEDQLKKKIDEALA 835
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M +D +SKGFGFVCF + EEA KAVTEM+ +II KPLYV LA+++E R + L ++
Sbjct: 442 MKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 499
Score = 44.7 bits (104), Expect = 0.051, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH---LASQYM 58
E G+SK +GFV + E A +A+ ++NG +GSK +YV +K +R + + Y+
Sbjct: 138 DEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYV 197
Query: 59 QRIANMRMQ-QMGQLFQP-GSTGGYFVPTLPQPQRF 92
+ + + + QLF P G V + + ++F
Sbjct: 198 KNFPDTVTEAHLKQLFSPYGEITSMIVKSDNKNRKF 233
>gi|440797930|gb|ELR19004.1| polyadenylate-binding protein family protein [Acanthamoeba
castellanii str. Neff]
Length = 462
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 33/54 (61%), Positives = 48/54 (88%), Gaps = 1/54 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
MS+D G S+GFGFVC+++PE+A+KAV+EMNG+++ +KP+YVALA+RK+ R A L
Sbjct: 322 MSDDKGNSRGFGFVCYTNPEDASKAVSEMNGKMVANKPIYVALAERKDVRSAKL 375
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 30/65 (46%), Positives = 48/65 (73%), Gaps = 2/65 (3%)
Query: 235 KQMLGERLFPLIQRMYPELAG-KITGMLLE-IDNAELLYMLEHNESLKSKVEEAVAVLQA 292
K ++GE L+PL++ + G KITGMLLE +D ELL++L+ ++L+ KV+EAV VL+A
Sbjct: 389 KNIIGETLYPLVEALTSATQGPKITGMLLESMDVTELLHLLQSPDALREKVDEAVGVLKA 448
Query: 293 HQAKQ 297
H+ ++
Sbjct: 449 HEGEE 453
Score = 44.7 bits (104), Expect = 0.046, Method: Compositional matrix adjust.
Identities = 20/44 (45%), Positives = 28/44 (63%)
Query: 10 FGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
F FV F E A +A E+NGR +G K +YV AQ+K +R++ L
Sbjct: 231 FAFVNFEDHEAAHRATEELNGRKLGDKEVYVGRAQKKSERESFL 274
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/69 (28%), Positives = 38/69 (55%), Gaps = 3/69 (4%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G SKG+GFV + + E A A+ ++NG+++ K +YV R RK ++ N+
Sbjct: 135 GNSKGYGFVHYETSEAADSAIAKVNGKMLNGKIVYVG---RFIARKERTPGSDPEKFTNI 191
Query: 65 RMQQMGQLF 73
++ +G+ +
Sbjct: 192 YIKNLGEAY 200
>gi|357437769|ref|XP_003589160.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355478208|gb|AES59411.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 647
Score = 79.0 bits (193), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 48/56 (85%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G S+G GFV FS+PEEA++A+ EMNG++I SKPLYVA+AQRKEDR+A L +Q+ Q
Sbjct: 351 NGVSRGSGFVAFSTPEEASRALGEMNGKMIVSKPLYVAVAQRKEDRRARLQAQFSQ 406
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DGRSK FGFV F + E+A KAV +NG+ + K YV AQ+K +R+ L ++ Q +
Sbjct: 247 DGRSKCFGFVNFENAEDAAKAVEALNGKKVDDKEWYVGKAQKKSEREQELKGRFEQTV 304
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 41/78 (52%), Gaps = 3/78 (3%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKG+GFV F + + A A+ ++NG +I K ++V RK+DR L+ + N+
Sbjct: 157 GQSKGYGFVQFEAEDSAQNAIDKLNGMLINDKQVFVGHFLRKQDRDNVLSK---TKFNNV 213
Query: 65 RMQQMGQLFQPGSTGGYF 82
++ + + F F
Sbjct: 214 YVKNLSESFTEDDLKNEF 231
>gi|70943813|ref|XP_741907.1| hypothetical protein [Plasmodium chabaudi chabaudi]
gi|56520585|emb|CAH81424.1| hypothetical protein PC000611.04.0 [Plasmodium chabaudi chabaudi]
Length = 87
Score = 79.0 bits (193), Expect = 3e-12, Method: Composition-based stats.
Identities = 37/58 (63%), Positives = 49/58 (84%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QKQ+LGE LFPL+ +P LAGKITGM+LE+DN+ELL +LE+ + LK K++EA+AVLQ
Sbjct: 27 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEDQLKKKIDEALAVLQ 84
>gi|303272375|ref|XP_003055549.1| predicted protein [Micromonas pusilla CCMP1545]
gi|226463523|gb|EEH60801.1| predicted protein [Micromonas pusilla CCMP1545]
Length = 606
Score = 79.0 bits (193), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 45/56 (80%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G S+G FV FSS +EAT+AVTEMNG++ G KPLYVALAQRKEDR+ L +Q+ QR
Sbjct: 350 GASRGSAFVAFSSADEATRAVTEMNGKMAGQKPLYVALAQRKEDRRLRLQAQFAQR 405
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/55 (43%), Positives = 36/55 (65%), Gaps = 1/55 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNG-RIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+SKGFGFVC+ E A K+V E++G I K V AQ+K +R+A L +++
Sbjct: 245 EGKSKGFGFVCYEDAEAAGKSVEELDGYDKIEDKAWVVCRAQKKSEREAELKAKF 299
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 18/45 (40%), Positives = 30/45 (66%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
G+SKG+GFV F + E A A+ ++NG ++ K +YV Q++ +R
Sbjct: 157 GQSKGYGFVQFDTEEGAQSAIEKVNGMLLNDKQVYVGPFQKRNER 201
>gi|342183555|emb|CCC93035.1| poly(A)-binding protein 1 [Trypanosoma congolense IL3000]
Length = 557
Score = 78.6 bits (192), Expect = 3e-12, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
STMLA+ P++QK +LGERL+ I R P +A K+TGMLLE+DN+E+L +L+ L +K
Sbjct: 484 STMLASLPPEQQKNVLGERLYNYIVRNNPSVAAKVTGMLLEMDNSEILNLLDSPSMLDTK 543
Query: 283 VEEAVAVLQAH 293
V+EA+ VL H
Sbjct: 544 VQEALDVLNNH 554
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 8/65 (12%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRI-IGSKPLYVALAQRKEDRKAHLASQYMQRIANM- 64
S+ FGFV F A++A+ E++G +G +PL+V A RK+ R+ Q ++ I N
Sbjct: 328 SRCFGFVSFKEQSAASQAIQELHGSTALGPRPLFVTYALRKDARR-----QTLEDIRNKQ 382
Query: 65 -RMQQ 68
RM+Q
Sbjct: 383 PRMRQ 387
>gi|317106693|dbj|BAJ53194.1| JHL03K20.3 [Jatropha curcas]
Length = 642
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 37/56 (66%), Positives = 48/56 (85%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G SKG GFV +S+ EEA+KA+TEMNG++I SKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 347 NGVSKGSGFVAYSTAEEASKALTEMNGKMIVSKPLYVALAQRKEERRARLQAQFSQ 402
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+S+ FGFV F +P++A ++V +NG+ K YV AQ+K +R+ L Q+ Q +
Sbjct: 244 DGKSRCFGFVNFENPDDAARSVEALNGKTFDEKEWYVGKAQKKSEREVELKGQFEQTL 301
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 31/47 (65%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+S G+GFV F + E A A+ ++NG ++ K +YV R+++R++
Sbjct: 154 GQSLGYGFVQFDNEESAKNAIDKLNGMLLNDKQVYVGPFLRRQERES 200
>gi|302808075|ref|XP_002985732.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
gi|300146641|gb|EFJ13310.1| hypothetical protein SELMODRAFT_122762 [Selaginella moellendorffii]
Length = 635
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 64/100 (64%)
Query: 192 PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYP 251
P ++ + GG+ P + + ++ LA+A P +Q+ MLGE+L+PL+ +
Sbjct: 531 PTSRNSSDAGGMLPVPLEASETGILPPINVLASALASASPTDQRVMLGEQLYPLVDNLEH 590
Query: 252 ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
E AGK+TGMLLE+D E+L+++E E+LK+KV EA+ VL+
Sbjct: 591 ECAGKVTGMLLEMDQTEVLHLIESPEALKAKVAEAMDVLR 630
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SK FGFV F + ++A AV E+NG+ + K YV AQ+K +R+A L ++Y Q
Sbjct: 252 EGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQ 307
>gi|302785327|ref|XP_002974435.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
gi|300158033|gb|EFJ24657.1| hypothetical protein SELMODRAFT_101161 [Selaginella moellendorffii]
Length = 642
Score = 78.6 bits (192), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 39/100 (39%), Positives = 64/100 (64%)
Query: 192 PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYP 251
P ++ + GG+ P + + ++ LA+A P +Q+ MLGE+L+PL+ +
Sbjct: 538 PTSRNSSDAGGMLPVPLEASETGILPPINVLASALASASPTDQRVMLGEQLYPLVDNLEH 597
Query: 252 ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
E AGK+TGMLLE+D E+L+++E E+LK+KV EA+ VL+
Sbjct: 598 ECAGKVTGMLLEMDQTEVLHLIESPEALKAKVAEAMDVLR 637
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 38/56 (67%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SK FGFV F + ++A AV E+NG+ + K YV AQ+K +R+A L ++Y Q
Sbjct: 252 EGKSKCFGFVNFENADDAALAVEELNGKKMDDKEWYVGRAQKKSEREAELRARYDQ 307
>gi|294940190|ref|XP_002782709.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239894589|gb|EER14504.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 716
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 49/59 (83%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
QKQMLGE+L+ IQR+ P+LAGKITGM+LE+DN+ELL +LE L++KV+EA+ VL +
Sbjct: 657 QKQMLGEQLYTQIQRIQPQLAGKITGMMLEMDNSELLILLESESQLRAKVDEALMVLHS 715
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA----LAQRKEDRKAHLASQ 56
++ DG+S+GFGFV F S E A A+ ++NG IG K +YVA A+R + + +
Sbjct: 169 LTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKNFTNV 228
Query: 57 YMQRI-ANMRMQQMGQLFQP-GSTGGYFVPTLPQPQRF 92
Y++ I A+ +++ + F G V T P+ +RF
Sbjct: 229 YIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRRF 266
>gi|294889687|ref|XP_002772922.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239877502|gb|EER04738.1| polyadenylate-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 715
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 36/59 (61%), Positives = 49/59 (83%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
QKQMLGE+L+ IQR+ P+LAGKITGM+LE+DN+ELL +LE L++KV+EA+ VL +
Sbjct: 656 QKQMLGEQLYTQIQRIQPQLAGKITGMMLEMDNSELLILLESESQLRAKVDEALMVLHS 714
Score = 52.4 bits (124), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 33/98 (33%), Positives = 54/98 (55%), Gaps = 6/98 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA----LAQRKEDRKAHLASQ 56
++ DG+S+GFGFV F S E A A+ ++NG IG K +YVA A+R + + +
Sbjct: 169 LTPDGKSRGFGFVHFESDESAEAAIAKLNGMQIGEKTVYVAPFKKTAERNDGTPKNFTNV 228
Query: 57 YMQRI-ANMRMQQMGQLFQP-GSTGGYFVPTLPQPQRF 92
Y++ I A+ +++ + F G V T P+ +RF
Sbjct: 229 YIKHIPASWNEEKIKEEFGAFGEITSLAVQTDPKGRRF 266
>gi|403271841|ref|XP_003927812.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Saimiri boliviensis boliviensis]
Length = 647
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 34/45 (75%), Positives = 41/45 (91%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+SKGFG +CFSSPE+A KA+TEMNGRI+GSKPL +ALAQR
Sbjct: 602 MQEEGQSKGFGLICFSSPEDALKAMTEMNGRILGSKPLSIALAQR 646
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 32/63 (50%), Positives = 44/63 (69%), Gaps = 1/63 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFV F S E A KAV EMNGR I + ++VA AQ+K +R+A L Q +++ N
Sbjct: 504 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVARAQKKVERQAEL-KQMFEQLKNE 562
Query: 65 RMQ 67
R++
Sbjct: 563 RIR 565
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 23/70 (32%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F + A +A+ EMNG+++ ++V + ++DR+A L S+ +
Sbjct: 407 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLQGCKVFVGRFKSRQDREAELRSKASE- 465
Query: 61 IANMRMQQMG 70
N+ ++ G
Sbjct: 466 FTNVYIKNFG 475
>gi|414588972|tpg|DAA39543.1| TPA: hypothetical protein ZEAMMB73_983793 [Zea mays]
Length = 246
Score = 78.2 bits (191), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 76/225 (33%), Positives = 107/225 (47%), Gaps = 31/225 (13%)
Query: 90 QRFYGPTQMTQIRPQPRWA----AAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGA 145
Q FYG I PQ +A P MRP G +P F P GQ R A
Sbjct: 27 QLFYGQPPPAFINPQAGFAFQQPLMPGMRPGG-------PMPNFM-MPMVQQGQQPQRPA 78
Query: 146 NMSA------RPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQ 199
A P+ GQ + PRGG + P + G + G P +
Sbjct: 79 GRRAGGMQQPMPMGGQQQVFPRGGRGYRYPTGRGMPDPGMHSVGAV--------MPPSYE 130
Query: 200 IGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITG 259
+GG+ A Q V + +T LA A P +Q+ MLGE L+PL++++ E A K+TG
Sbjct: 131 MGGMPMREAAPQPVPIGA----LATALANAPPDQQRLMLGENLYPLVEQLEREQAAKVTG 186
Query: 260 MLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ-AHQAKQAAVKKE 303
MLLE+D E+L++LE ++LK+KV EA+ VL+ A +Q+ V E
Sbjct: 187 MLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQQSNVSTE 231
>gi|255555393|ref|XP_002518733.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223542114|gb|EEF43658.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 644
Score = 78.2 bits (191), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 35/68 (51%), Positives = 55/68 (80%)
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P++Q+ MLGE L+PL++++ P+ A K+TGMLLE+D E+L++LE E+LK+KV EA+ VL
Sbjct: 559 PEQQRTMLGENLYPLVEQLEPDAAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 618
Query: 291 QAHQAKQA 298
++ Q +QA
Sbjct: 619 RSVQQQQA 626
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG++K FGFV F + ++A AV +NG+ K +V AQ+K +R+ L ++ Q +
Sbjct: 239 DGKTKCFGFVNFENADDAATAVEALNGKKFDDKEWFVGKAQKKNERENELKVRFEQSM 296
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKG+GFV F + E A KA+ ++NG ++ K +YV RK++R++ + R N+
Sbjct: 149 GQSKGYGFVQFDNEESAQKAIEKLNGMLLNDKQVYVGPFLRKQERESAIDK---TRFNNV 205
Query: 65 RMQQMGQ 71
++ + +
Sbjct: 206 YVKNLSE 212
>gi|33504432|emb|CAD43730.1| putative poly(A)-binding protein [Mangifera indica]
Length = 130
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 48/56 (85%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G S+G GFV F++PEEA++A+ EMNG+++ SKPL+VALAQRKEDR+A L +Q+ Q
Sbjct: 50 NGISRGSGFVAFTTPEEASRAILEMNGKMVVSKPLFVALAQRKEDRRARLQAQFSQ 105
>gi|297802580|ref|XP_002869174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297315010|gb|EFH45433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 625
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 45/107 (42%), Positives = 64/107 (59%), Gaps = 11/107 (10%)
Query: 193 GTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPE 252
G P +G P G A H LA A P++Q+ MLGE L+PL++++ E
Sbjct: 521 GEVPPYDMGNNMPLPIGALASH-----------LANASPEQQRTMLGESLYPLVEQLEAE 569
Query: 253 LAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAA 299
A K+TGMLLE+D E+L++LE E+LK+KV EA+ VL++ A AA
Sbjct: 570 SAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMDVLRSVAAGGAA 616
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SKGFGFV F + ++A +AV +NG K YV AQ+K +R+ L +Y Q +
Sbjct: 251 DGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNL 308
Score = 44.7 bits (104), Expect = 0.047, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLAS 55
+ G+SKG+GFV +++ E A KA+ ++NG ++ K +YV R+++R K +
Sbjct: 157 VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTN 216
Query: 56 QYMQRIA 62
Y++ +A
Sbjct: 217 VYVKNLA 223
>gi|359386152|gb|AEV43365.1| poly A-binding protein 2 [Citrus sinensis]
Length = 652
Score = 77.8 bits (190), Expect = 5e-12, Method: Compositional matrix adjust.
Identities = 36/56 (64%), Positives = 48/56 (85%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G S+G GFV FS+ EEA+KA+TEMNG+++ SKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 358 NGISRGSGFVAFSTAEEASKALTEMNGKMVVSKPLYVALAQRKEERRARLQAQFSQ 413
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F P++A ++V +NG+ K YV AQ+K +R+ L ++ Q +
Sbjct: 255 DGKSKCFGFVNFDDPDDAARSVEALNGKKFDDKEWYVGKAQKKYEREMELKGKFEQSL 312
Score = 42.4 bits (98), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/47 (36%), Positives = 32/47 (68%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+S+G+GFV F + E A A+ ++NG ++ K ++V RK++R++
Sbjct: 165 GQSRGYGFVQFDNEESAKSAIDKLNGMLLNDKQVFVGPFLRKQERES 211
>gi|449302325|gb|EMC98334.1| hypothetical protein BAUCODRAFT_86883 [Baudoinia compniacensis UAMH
10762]
Length = 802
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 38/73 (52%), Positives = 53/73 (72%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
L AA P +QKQ+LGE L+P I PELAGKITGMLLE+DN ELL + +++L++KV+E
Sbjct: 697 LNAAPPSQQKQILGEALYPKIHAQQPELAGKITGMLLEMDNHELLGLTTDDDALRAKVDE 756
Query: 286 AVAVLQAHQAKQA 298
A+ V + + Q+
Sbjct: 757 AMNVYEEYVKNQS 769
Score = 54.7 bits (130), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV + + E+A KAV E+N + LYV AQ+K +R+ L QY
Sbjct: 277 NETGKSRGFGFVNYINHEDAYKAVDELNDSDFHGQKLYVGRAQKKHEREEELRKQY 332
Score = 44.3 bits (103), Expect = 0.076, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHL 53
+ E G SKG+GFV + + E A++A+ +NG ++ K ++V K+DR KA+
Sbjct: 182 VDELGNSKGYGFVHYETAEAASQAIKSVNGMLLNEKKVFVGHHIPKKDRMSKFEEMKANF 241
Query: 54 ASQYMQRI 61
+ Y++ I
Sbjct: 242 TNIYVKNI 249
>gi|444721742|gb|ELW62457.1| Polyadenylate-binding protein 4-like protein [Tupaia chinensis]
Length = 370
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 33/45 (73%), Positives = 42/45 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+SKGFG +CFSSPEEATKA+TEMNG+I+GSKPL +AL+Q+
Sbjct: 325 MQEEGQSKGFGLICFSSPEEATKAMTEMNGQILGSKPLNIALSQK 369
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/55 (49%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F + E A KAV EMNG+ I + ++V AQ+K +R+A L + Q
Sbjct: 227 GKSKGFGFVSFDNHEAAQKAVEEMNGKDINGQLIFVGRAQKKVERQAELKQMFEQ 281
Score = 45.8 bits (107), Expect = 0.022, Method: Compositional matrix adjust.
Identities = 20/56 (35%), Positives = 36/56 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
MS+D SKG+ FV F + A +A+ EMNG+++ ++V + ++DR+A L ++
Sbjct: 130 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKDCKVFVGRFKNRKDREAELRNK 185
>gi|240256156|ref|NP_195137.5| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
gi|1171978|sp|P42731.1|PABP2_ARATH RecName: Full=Polyadenylate-binding protein 2; Short=PABP-2;
Short=Poly(A)-binding protein 2
gi|304109|gb|AAA61780.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|2911051|emb|CAA17561.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|7270360|emb|CAB80128.1| poly(A)-binding protein [Arabidopsis thaliana]
gi|26983870|gb|AAN86187.1| putative polyadenylate-binding protein 2 (PABP2) [Arabidopsis
thaliana]
gi|332660925|gb|AEE86325.1| Polyadenylate-binding protein 2 [Arabidopsis thaliana]
Length = 629
Score = 77.8 bits (190), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 16/122 (13%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G SKG GFV F++PEEAT+A+++++G++I SKPLYVA+AQRKEDR+ L +Q+ Q +
Sbjct: 354 NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQ-VRP 412
Query: 64 MRMQ-QMG---QLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQMRP 115
+ MQ +G ++ PG P + Q Q FYG I PQP + P MRP
Sbjct: 413 VAMQPSVGPRMPVYPPGG------PGIGQ-QMFYGQAPPAMIPPQPGYGYQQQLVPGMRP 465
Query: 116 SG 117
G
Sbjct: 466 GG 467
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+SKGFGFV F + ++A +AV +NG K YV AQ+K +R+ L +Y Q +
Sbjct: 251 EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNL 308
Score = 45.1 bits (105), Expect = 0.040, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLAS 55
+ G+SKG+GFV +++ E A KA+ ++NG ++ K +YV R+++R K +
Sbjct: 157 VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTN 216
Query: 56 QYMQRIA 62
Y++ +A
Sbjct: 217 VYVKNLA 223
>gi|19347816|gb|AAL86321.1| putative poly(A)-binding protein [Arabidopsis thaliana]
Length = 613
Score = 77.4 bits (189), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 16/122 (13%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G SKG GFV F++PEEAT+A+++++G++I SKPLYVA+AQRKEDR+ L +Q+ Q +
Sbjct: 338 NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQ-VRP 396
Query: 64 MRMQ-QMG---QLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQMRP 115
+ MQ +G ++ PG P + Q Q FYG I PQP + P MRP
Sbjct: 397 VAMQPSVGPRMPVYPPGG------PGIGQ-QMFYGQAPPAMIPPQPGYGYQQQLVPGMRP 449
Query: 116 SG 117
G
Sbjct: 450 GG 451
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+SKGFGFV F + ++A +AV +NG K YV AQ+K +R+ L +Y Q +
Sbjct: 235 EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNL 292
Score = 45.1 bits (105), Expect = 0.045, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLAS 55
+ G+SKG+GFV +++ E A KA+ ++NG ++ K +YV R+++R K +
Sbjct: 141 VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTN 200
Query: 56 QYMQRIA 62
Y++ +A
Sbjct: 201 VYVKNLA 207
>gi|5007080|gb|AAD37807.1| poly(A)-binding protein [Oryza sativa]
Length = 183
Score = 77.4 bits (189), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 46/56 (82%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G S+G GFV F S E+A++A+ EMN +++GSKPLYVALAQRKEDRKA L +Q+ Q
Sbjct: 85 NGVSRGSGFVAFKSAEDASRALAEMNSKMVGSKPLYVALAQRKEDRKARLQAQFSQ 140
>gi|293335667|ref|NP_001167831.1| uncharacterized protein LOC100381531 [Zea mays]
gi|223944311|gb|ACN26239.1| unknown [Zea mays]
Length = 249
Score = 77.4 bits (189), Expect = 8e-12, Method: Compositional matrix adjust.
Identities = 72/214 (33%), Positives = 101/214 (47%), Gaps = 19/214 (8%)
Query: 90 QRFYGPTQMTQIRPQPRWA----AAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGA 145
Q FYG I PQ +A P MRP G + Q P+ G+ G
Sbjct: 27 QLFYGQPPPAFINPQAGFAFQQPMMPGMRPGGPMPNFMMPMVQQGQQPQRPAGRRAGSGG 86
Query: 146 NMSARPITGQSTMGPRGG-GPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQ 204
P+ Q + PRGG G A G G P ++GG+
Sbjct: 87 MQQPMPMGSQQQIFPRGGRGYRYATGRGMPDPGMHNVGAVMPSPY---------EMGGMA 137
Query: 205 PAAAGV-QAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLE 263
AGV Q V + +T LA A P +Q+ MLGE L+PL++++ E A K+TGMLLE
Sbjct: 138 MRDAGVSQPVPIGA----LATALANASPDQQRLMLGENLYPLVEQLEREQAAKVTGMLLE 193
Query: 264 IDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQ 297
+D E+L++LE ++LK+KV EA+ VL++ Q Q
Sbjct: 194 MDQTEVLHLLESPDALKAKVAEAMEVLRSAQHLQ 227
>gi|14029147|gb|AAK51123.1| polyadenylated mRNA-binding protein 2 [Anemia phyllitidis]
Length = 472
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 36/69 (52%), Positives = 53/69 (76%)
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P++Q+ MLGE+L+PL+ R+ + AGK+TGMLLE+D E+L+++E E+LK+KV EA+ VL
Sbjct: 385 PEQQRVMLGEQLYPLVDRLEHDHAGKVTGMLLEMDQTEVLHLIESPEALKAKVAEAMDVL 444
Query: 291 QAHQAKQAA 299
Q QA A
Sbjct: 445 QMAQANAGA 453
Score = 55.8 bits (133), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 36/56 (64%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G SK FGFV F + ++A KAV +NG++ K YV AQ+K +R+A L ++ Q
Sbjct: 66 NGNSKCFGFVNFKNADDAAKAVENINGKVFNDKEWYVGRAQKKSEREAELKVKFEQ 121
>gi|106879567|emb|CAJ38367.1| polyA-binding protein [Plantago major]
Length = 314
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 47/55 (85%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+G GFV FS+PEE+ +A++EMNG+++ SKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 13 GISRGSGFVAFSTPEESARALSEMNGKMVISKPLYVALAQRKEERRARLQAQFSQ 67
>gi|340056333|emb|CCC50664.1| poly(A)-binding protein [Trypanosoma vivax Y486]
Length = 548
Score = 77.0 bits (188), Expect = 9e-12, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 52/71 (73%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
STMLA P++QK +LGERL+ I R+ P +A K+TGMLLE+DN+E+L +L+ L +K
Sbjct: 475 STMLANLTPEQQKNVLGERLYNHIVRVNPSVAAKVTGMLLEMDNSEILNLLDTPGLLDTK 534
Query: 283 VEEAVAVLQAH 293
V+EA+ VL H
Sbjct: 535 VQEALEVLNRH 545
Score = 42.0 bits (97), Expect = 0.33, Method: Compositional matrix adjust.
Identities = 37/125 (29%), Positives = 55/125 (44%), Gaps = 29/125 (23%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRI-IGSKPLYVALAQRKEDRKAHLASQYMQRIANMR 65
S+ FGFV F A++A+ E++G +G +PL+V A RK+ R+ L R R
Sbjct: 328 SRCFGFVSFKEQNSASRAIQELHGSTALGPRPLFVTYALRKDARRQTLEDM---RNKQPR 384
Query: 66 MQQ--------------MGQLFQPGSTGGY-----FVPTLPQ------PQRFYGPTQMTQ 100
M+Q +G + P G +P +P P R GPT M Q
Sbjct: 385 MRQTPMGGLMGGMMGPQLGFMNPPAMFNGVPFMNTRMPMMPNAMGMGGPMRPLGPTPMNQ 444
Query: 101 IRPQP 105
+R +P
Sbjct: 445 VRARP 449
>gi|224137600|ref|XP_002327166.1| predicted protein [Populus trichocarpa]
gi|222835481|gb|EEE73916.1| predicted protein [Populus trichocarpa]
Length = 632
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 47/55 (85%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+G GFV FS+PEEA++A+ EMNG+++ SKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 331 GISRGSGFVAFSTPEEASRALAEMNGKMLISKPLYVALAQRKEERRARLQAQFSQ 385
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F S ++A KAV +NG+ I + YV AQ+K +R+ L ++ Q +
Sbjct: 227 DGKSKCFGFVNFESADDAAKAVEALNGKKIDGEEWYVGKAQKKSERELELKGRFEQSM 284
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 23/51 (45%), Positives = 32/51 (62%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLAS 55
G+SKG+GFV F S E A A+ ++NG ++ K +YV RK+DR L S
Sbjct: 137 GQSKGYGFVQFDSEEAAQNAIDKLNGMLVNDKQVYVGHFLRKQDRDGALYS 187
>gi|356552218|ref|XP_003544466.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 652
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 45/55 (81%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G +G GFV FS+PEEA++A+ EMNG++I KPLYVALAQRKEDR+A L +Q+ Q
Sbjct: 352 GIGRGSGFVAFSTPEEASRALGEMNGKMIAGKPLYVALAQRKEDRRARLQAQFSQ 406
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 38/58 (65%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+S+ FGFV F +P++A KAV +NG+ + K YV AQ+K +R+ L ++ Q I
Sbjct: 248 DGKSRCFGFVNFENPDDAAKAVEGLNGKKVDDKEWYVGKAQKKSEREQELKGRFEQSI 305
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 33/57 (57%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
G SKG+GFV F S E A A+ ++NG +I K +YV RK+DR+ L+ +
Sbjct: 158 GLSKGYGFVQFDSEESAQNAIDKLNGMLINDKQVYVGHFLRKQDRENALSKTKFNNV 214
>gi|444727077|gb|ELW67584.1| Acyl-coenzyme A thioesterase 9, mitochondrial [Tupaia chinensis]
Length = 468
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 36/61 (59%), Positives = 49/61 (80%), Gaps = 4/61 (6%)
Query: 9 GFGFVCF----SSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+ +V F + +EAT+AVTEMN RI+ +KPLYVALAQRKE+ +AHL +QYMQR+A++
Sbjct: 8 GYTYVNFEQSADAEQEATEAVTEMNSRIVATKPLYVALAQRKEEYQAHLTNQYMQRMASV 67
Query: 65 R 65
R
Sbjct: 68 R 68
>gi|224105583|ref|XP_002313862.1| predicted protein [Populus trichocarpa]
gi|222850270|gb|EEE87817.1| predicted protein [Populus trichocarpa]
Length = 642
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 50/64 (78%)
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P +Q+ MLGE L+PL++++ PE A K+TGMLLE+D E+L++LE E+LKSKV EA+ VL
Sbjct: 558 PDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKSKVNEAMEVL 617
Query: 291 QAHQ 294
+ Q
Sbjct: 618 RTVQ 621
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 21/47 (44%), Positives = 31/47 (65%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKG+GFV F S E A KA+ ++NG ++ K +YV RK++R
Sbjct: 150 GQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDT 196
Score = 40.8 bits (94), Expect = 0.70, Method: Compositional matrix adjust.
Identities = 21/58 (36%), Positives = 35/58 (60%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+S+ FGFV F + ++A KA +NG+ K +V AQ+K +R+ L ++ Q +
Sbjct: 240 DGKSRCFGFVNFENADDAAKAAEALNGKKFDDKEWFVGKAQKKYEREVELKQRFEQSM 297
>gi|297827151|ref|XP_002881458.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
gi|297327297|gb|EFH57717.1| PAB7 binding protein 7 [Arabidopsis lyrata subsp. lyrata]
Length = 609
Score = 76.6 bits (187), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 41/56 (73%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+SKGFGFVCFS+PEEA AV +G++ KPLYVA AQ+KEDRK L Q+
Sbjct: 338 DEKGKSKGFGFVCFSTPEEAIDAVKTFHGKMFHGKPLYVATAQKKEDRKMQLQVQF 393
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 31/59 (52%), Positives = 47/59 (79%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
+KQ+LGE L+PL++++ P+LA KITGMLLE+D +ELL +L+ + L +VEEA VL++
Sbjct: 525 EKQLLGELLYPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPQELAVRVEEAFEVLKS 583
Score = 53.1 bits (126), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 35/59 (59%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
E+G KG+ FV F PE+A A MNG GSK LYV AQ+K +R+ L Q+ ++
Sbjct: 235 DENGLCKGYAFVNFDKPEDARWAAETMNGTRFGSKCLYVGRAQKKAEREQLLREQFKEK 293
Score = 43.1 bits (100), Expect = 0.16, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 28/47 (59%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
EDG+S+G+GFV F + A A+ ++N + K +YV +K DR
Sbjct: 147 EDGKSRGYGFVQFEQEDAAHAAIEKLNSTTVAGKEIYVGKFMKKTDR 193
>gi|222635819|gb|EEE65951.1| hypothetical protein OsJ_21832 [Oryza sativa Japonica Group]
Length = 710
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 45/57 (78%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ GRSKG GFV F++ E+A A+ +MNG+++G KPLYVA+AQRKE+RKA LA+ +
Sbjct: 400 LDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHF 456
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/68 (47%), Positives = 53/68 (77%)
Query: 224 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 283
T LA+A P++Q+++LG+ LFPL++++ E A K+TGMLLE+D E+L ++E ++L+ KV
Sbjct: 597 TSLASANPEQQREILGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVLNLVESPDTLRDKV 656
Query: 284 EEAVAVLQ 291
EA+ VL+
Sbjct: 657 AEAMKVLE 664
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G S+ FGFV F E A AV +NG+ IG LYVA AQ+K +R+A L +++
Sbjct: 300 NGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKF 353
Score = 42.4 bits (98), Expect = 0.29, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK-EDRKAHLASQYMQRIA-N 63
+S G+G+V F S E+AT+A+ +N ++ KP+ V + R RK+ LA+ +++ + N
Sbjct: 124 KSLGYGYVNFMSREDATRAMENLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPN 183
Query: 64 MRMQQMGQLFQPGST 78
+ + + ++F T
Sbjct: 184 IDNKSLYEMFSSFGT 198
Score = 40.8 bits (94), Expect = 0.71, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+G+SKG+GF+ F S A A+ +NG + + ++V L R+++R+
Sbjct: 209 NGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQERE 255
>gi|115468728|ref|NP_001057963.1| Os06g0589700 [Oryza sativa Japonica Group]
gi|113596003|dbj|BAF19877.1| Os06g0589700 [Oryza sativa Japonica Group]
Length = 399
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 45/57 (78%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ GRSKG GFV F++ E+A A+ +MNG+++G KPLYVA+AQRKE+RKA LA+ +
Sbjct: 105 LDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHF 161
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 14/157 (8%)
Query: 146 NMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGG--- 202
NM +P GQ + P GG P P + G+ P R G A +
Sbjct: 216 NMQRQP--GQRSGPPHGGMPRHLHNPHQMFHQN-ANQGFRHMPNRRNGVANPAMLHQHHR 272
Query: 203 ----IQPAAAGVQAV----HVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELA 254
+QP V+ V +Q T LA+A P++Q+++LG+ LFPL++++ E A
Sbjct: 273 FSSPMQPMQQAVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKA 332
Query: 255 GKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
K+TGMLLE+D E+L ++E ++L+ KV EA+ VL+
Sbjct: 333 YKVTGMLLELDKTEVLNLVESPDTLRDKVAEAMKVLE 369
Score = 53.5 bits (127), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G S+ FGFV F E A AV +NG+ IG LYVA AQ+K +R+A L +++
Sbjct: 5 NGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKF 58
>gi|50725435|dbj|BAD32907.1| putative polyadenylate-binding protein [Oryza sativa Japonica
Group]
Length = 670
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 45/57 (78%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ GRSKG GFV F++ E+A A+ +MNG+++G KPLYVA+AQRKE+RKA LA+ +
Sbjct: 376 LDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHF 432
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 14/157 (8%)
Query: 146 NMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQI----- 200
NM +P GQ + P GG P P + G + P R G A +
Sbjct: 487 NMQRQP--GQRSGPPHGGMPRHLHNPHQMFHQNANQG-FRHMPNRRNGVANPAMLHQHHR 543
Query: 201 --GGIQPAAAGVQAV----HVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELA 254
+QP V+ V +Q T LA+A P++Q+++LG+ LFPL++++ E A
Sbjct: 544 FSSPMQPMQQAVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKA 603
Query: 255 GKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
K+TGMLLE+D E+L ++E ++L+ KV EA+ VL+
Sbjct: 604 YKVTGMLLELDKTEVLNLVESPDTLRDKVAEAMKVLE 640
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G S+ FGFV F E A AV +NG+ IG LYVA AQ+K +R+A L +++
Sbjct: 276 NGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKF 329
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRIA-N 63
+S G+G+V F S E+AT+A+ +N ++ KP+ V + R RK+ LA+ +++ + N
Sbjct: 100 KSLGYGYVNFMSREDATRAMENLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPN 159
Query: 64 MRMQQMGQLFQPGST 78
+ + + ++F T
Sbjct: 160 IDNKSLYEMFSSFGT 174
Score = 40.8 bits (94), Expect = 0.76, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+G+SKG+GF+ F S A A+ +NG + + ++V L R+++R+
Sbjct: 185 NGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQERE 231
>gi|125555900|gb|EAZ01506.1| hypothetical protein OsI_23538 [Oryza sativa Indica Group]
Length = 669
Score = 76.3 bits (186), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 32/57 (56%), Positives = 45/57 (78%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ GRSKG GFV F++ E+A A+ +MNG+++G KPLYVA+AQRKE+RKA LA+ +
Sbjct: 377 LDSHGRSKGCGFVSFATVEDANNAILKMNGKMVGKKPLYVAVAQRKEERKAFLAAHF 433
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 52/157 (33%), Positives = 81/157 (51%), Gaps = 14/157 (8%)
Query: 146 NMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGG--- 202
NM +P GQ + P GG P P + G + P R G A +
Sbjct: 488 NMQRQP--GQRSGPPHGGMPRHLHNPHQMFHQNANQG-FRHMPNRRNGVANPAMLHQHHR 544
Query: 203 ----IQPAAAGVQAV----HVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELA 254
+QP V+ V +Q T LA+A P++Q+++LG+ LFPL++++ E A
Sbjct: 545 FSSPMQPMQQAVKHVVPVGELQAPSNNLQTSLASANPEQQREILGDMLFPLVEQLVNEKA 604
Query: 255 GKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
K+TGMLLE+D E+L ++E ++L+ KV EA+ VL+
Sbjct: 605 YKVTGMLLELDKTEVLNLVESPDTLRDKVAEAMKVLE 641
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 25/54 (46%), Positives = 35/54 (64%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G S+ FGFV F E A AV +NG+ IG LYVA AQ+K +R+A L +++
Sbjct: 277 NGLSRCFGFVNFEKSECARNAVKNLNGKSIGDMVLYVARAQKKSERQAELKAKF 330
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/75 (29%), Positives = 44/75 (58%), Gaps = 2/75 (2%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRIA-N 63
+S G+G+V F S E+AT+A+ +N ++ KP+ V + R RK+ LA+ +++ + N
Sbjct: 101 KSLGYGYVNFMSREDATRAMENLNFTVVNGKPIRVMFSNRDPTLRKSGLANVFIKNLEPN 160
Query: 64 MRMQQMGQLFQPGST 78
+ + + ++F T
Sbjct: 161 IDNKSLYEMFSSFGT 175
Score = 40.8 bits (94), Expect = 0.75, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 30/47 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+G+SKG+GF+ F S A A+ +NG + + ++V L R+++R+
Sbjct: 186 NGKSKGYGFIQFESESSAKDAINGLNGMLANGQKIFVGLFIRRQERE 232
>gi|168057049|ref|XP_001780529.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162668007|gb|EDQ54623.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 647
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 55/73 (75%)
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P +Q+ MLGE+L+PL+ ++ E AGK+TGMLLE+D E+L+++E E+LK+KV EA+ VL
Sbjct: 565 PDQQRAMLGEQLYPLVDQLEHEFAGKVTGMLLEMDQTEVLHLIESPEALKAKVNEAMEVL 624
Query: 291 QAHQAKQAAVKKE 303
+ QA +A +E
Sbjct: 625 RMAQAVPSAPTEE 637
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SK FGFV F ++A KAV +NG+ K YV AQ+K +R+A L +++ Q
Sbjct: 237 DNEGKSKCFGFVNFELADDAAKAVEALNGKKQDEKEWYVGRAQKKSEREAELRAKFEQ 294
Score = 40.8 bits (94), Expect = 0.78, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 39/67 (58%), Gaps = 3/67 (4%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKG+GFV F E A A+ ++NG ++ K ++V R+++R S + + N+
Sbjct: 149 GQSKGYGFVQFEKEESAQSAIEKVNGMLLNDKQVFVGPFVRRQERD---LSGGVSKFNNV 205
Query: 65 RMQQMGQ 71
++ +G+
Sbjct: 206 YVKNLGE 212
>gi|413954516|gb|AFW87165.1| hypothetical protein ZEAMMB73_979278 [Zea mays]
gi|414865260|tpg|DAA43817.1| TPA: hypothetical protein ZEAMMB73_808082 [Zea mays]
Length = 643
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 57/74 (77%)
Query: 222 TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
T+T +A+A P +Q Q+LG +L+ L++++ + AGK+TGMLLE+D AE+L +L E+L++
Sbjct: 518 TTTAVASAGPADQHQILGNKLYALVEQLERDHAGKVTGMLLEMDKAEILQLLRSPEALRA 577
Query: 282 KVEEAVAVLQAHQA 295
KV EA+AVLQ +A
Sbjct: 578 KVREAMAVLQRTKA 591
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 43/64 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
GRSKG GFV F++ E +A+ MNGRI+G KPLYV LAQ KE+RKA L + + QR M
Sbjct: 349 GRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKAMLMAHFAQRNLAM 408
Query: 65 RMQQ 68
Q
Sbjct: 409 AASQ 412
Score = 63.5 bits (153), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
DG SK FGFV F PE A +AV + NG+ IG K LYV AQ+KE+RKA L +++
Sbjct: 245 DGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRF 298
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
G+SKG+GFV + + E A A+ +NG + ++ ++V L R+ DR+ + Y++ +
Sbjct: 160 GQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNL 216
>gi|389595175|ref|XP_003722810.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
gi|323364038|emb|CBZ13044.1| poly(A)-binding protein 2 [Leishmania major strain Friedlin]
Length = 594
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 37/73 (50%), Positives = 50/73 (68%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+ +LA P++QK +LGERL+ I R +P +A KITGMLLE+DNAE+L ML+ L SK
Sbjct: 521 AAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNAEILNMLDSPTMLDSK 580
Query: 283 VEEAVAVLQAHQA 295
+ EA VL H +
Sbjct: 581 IAEAQDVLNRHMS 593
>gi|326511990|dbj|BAJ95976.1| predicted protein [Hordeum vulgare subsp. vulgare]
Length = 530
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 47/58 (81%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
++G SKG GFV FS+ EEA++A+TEMNG++I KPLYVA AQRKE+RKA L +Q+ Q
Sbjct: 438 DQNGVSKGSGFVSFSTREEASQALTEMNGKMISGKPLYVAFAQRKEERKAMLQAQFSQ 495
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 43/68 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
DG+S+ FGFV F SP++A +AV E+NG+ I K YV AQ+K +R+ L ++ Q + +
Sbjct: 337 DGKSRCFGFVNFESPDDAARAVEELNGKKINDKEWYVGRAQKKSEREMDLKRRFEQSMKD 396
Query: 64 MRMQQMGQ 71
+ GQ
Sbjct: 397 AADKYQGQ 404
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 24/67 (35%), Positives = 39/67 (58%), Gaps = 5/67 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLAS 55
M + G+SKGFGFV + E A A+ +NG +I KP+YV RK++R KA +
Sbjct: 243 MDDIGQSKGFGFVQYEKEESAQSAMKSLNGMLINDKPVYVGPFLRKQERDNSSDKAKFNN 302
Query: 56 QYMQRIA 62
+++ ++
Sbjct: 303 VFVKNLS 309
>gi|356537017|ref|XP_003537028.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 502
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 36/58 (62%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M +D G SKGFGFVCFS+PEEA KAV NG + KPLY+A+AQRK DRK L Y
Sbjct: 326 MRDDKGISKGFGFVCFSNPEEANKAVRSFNGCMFHRKPLYIAIAQRKMDRKTQLNLHY 383
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
++G SKGF FV + +P++A KA+ MNG GSK LYVA AQ+K +R+ L Q+ ++
Sbjct: 225 DDNGLSKGFAFVNYENPDDARKAMEAMNGLKFGSKNLYVARAQKKAEREQILHRQFEEK 283
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 32/49 (65%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
MS DG+SKG+GFV F S E A A+ ++NG +G K +YV RK DR
Sbjct: 133 MSGDGKSKGYGFVQFESEESANNAIEKLNGSTVGDKQIYVGKFVRKGDR 181
>gi|224060514|ref|XP_002300227.1| predicted protein [Populus trichocarpa]
gi|222847485|gb|EEE85032.1| predicted protein [Populus trichocarpa]
Length = 644
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 50/64 (78%)
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P +Q+ MLGE L+PL++++ PE A K+TGMLLE+D E+L++LE E+LK+KV EA+ VL
Sbjct: 560 PDQQRTMLGENLYPLVEQLEPEAAAKVTGMLLEMDQTEVLHLLESPEALKAKVNEAMEVL 619
Query: 291 QAHQ 294
+ Q
Sbjct: 620 RTVQ 623
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/58 (43%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F + E+A KAV +NG+ I K +V AQ+K +R+ L ++ Q +
Sbjct: 240 DGKSKCFGFVNFENAEDAAKAVEALNGKKIDDKEWFVGKAQKKYEREVELKQRFEQSM 297
Score = 46.6 bits (109), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 25/67 (37%), Positives = 41/67 (61%), Gaps = 3/67 (4%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKG+GFV F S E A KA+ ++NG ++ K +YV RK++R A+ M R N+
Sbjct: 150 GQSKGYGFVQFDSEEAAQKAIEKLNGMLLNDKQVYVGPFLRKQERDT--ATDKM-RFNNV 206
Query: 65 RMQQMGQ 71
++ + +
Sbjct: 207 FVKNLSE 213
>gi|386780450|dbj|BAM15222.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 657
Score = 75.9 bits (185), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 47/55 (85%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+G GFV FS+ EEA++A++EMNG++I SKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 357 GISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLQAQFSQ 411
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
DG+SK FGF+ F + E+A KAV +NG+ K YV AQ+K +R+ L S++ Q
Sbjct: 253 DGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQ 308
Score = 43.9 bits (102), Expect = 0.095, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 41/70 (58%), Gaps = 3/70 (4%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+SKG+GFV + + E A A+ ++NG ++ K +YV RK++R++ M +
Sbjct: 160 DSNGQSKGYGFVQYDNEESAQGAIDKLNGMLMNDKQVYVGHFLRKQERESTTG---MTKF 216
Query: 62 ANMRMQQMGQ 71
N+ ++ + +
Sbjct: 217 QNVYVKNLSE 226
>gi|7673359|gb|AAF66825.1| poly(A)-binding protein [Nicotiana tabacum]
Length = 479
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/55 (63%), Positives = 47/55 (85%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+G GFV FS+ EEA++A++EMNG++I SKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 179 GISRGSGFVAFSTSEEASRALSEMNGKMIVSKPLYVALAQRKEERRAKLRAQFSQ 233
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
DG+SK FGF+ F + E+A KAV +NG+ K YV AQ+K +R+ L S++ Q
Sbjct: 75 DGKSKCFGFINFETAEDAAKAVESLNGKKFDDKEWYVGKAQKKSEREQELKSKFEQ 130
>gi|34015145|gb|AAQ56342.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|125561054|gb|EAZ06502.1| hypothetical protein OsI_28747 [Oryza sativa Indica Group]
gi|125602953|gb|EAZ42278.1| hypothetical protein OsJ_26851 [Oryza sativa Japonica Group]
Length = 456
Score = 75.5 bits (184), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 46/56 (82%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G SKG GFV F S E+A++A+ MNG++IGSKPLYVALAQRKE+R+A L +Q+ Q
Sbjct: 358 NGVSKGSGFVAFKSAEDASRALVAMNGKMIGSKPLYVALAQRKEERRARLQAQFSQ 413
Score = 57.4 bits (137), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 23/58 (39%), Positives = 38/58 (65%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+S+ FGFV F +P++A +AV ++NG+ K YV AQ+K +R+ L ++ + I
Sbjct: 254 DGKSRCFGFVNFENPDDAARAVEDLNGKKFDDKEWYVCRAQKKSEREMELKEKFEKNI 311
Score = 42.4 bits (98), Expect = 0.30, Method: Compositional matrix adjust.
Identities = 19/46 (41%), Positives = 30/46 (65%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
G SKG+GFV F E A A++++NG ++ K +YV RK++R+
Sbjct: 164 GESKGYGFVQFELEEAAQNAISKLNGMLLNDKKVYVGPFVRKQERE 209
>gi|293331471|ref|NP_001168063.1| uncharacterized protein LOC100381794 [Zea mays]
gi|223945787|gb|ACN26977.1| unknown [Zea mays]
Length = 183
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 39/82 (47%), Positives = 59/82 (71%), Gaps = 1/82 (1%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+T LA A P +Q+ MLGE L+PL++++ E A K+TGMLLE+D E+L++LE ++LK+K
Sbjct: 87 ATALANAPPDQQRLMLGENLYPLVEQLEREQAAKVTGMLLEMDQTEVLHLLESPDALKAK 146
Query: 283 VEEAVAVLQ-AHQAKQAAVKKE 303
V EA+ VL+ A +Q+ V E
Sbjct: 147 VAEAMEVLRSAQHLQQSNVSTE 168
>gi|34015127|gb|AAQ56324.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
Length = 266
Score = 75.5 bits (184), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 28/154 (18%)
Query: 154 GQSTMGPRG--GGPMQAPGPASVSAAGRQTGGY-------NKYPVRNPGTQPQAQIGGIQ 204
G M PRG GG A G A R GG + P+ + G PQ IG +
Sbjct: 114 GHQQMLPRGSRGGYRYASGRGMPDNAFRGVGGLVPSPYEMGRMPLSDAGAPPQVPIGAL- 172
Query: 205 PAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEI 264
++ LA + P +Q+ MLGE L+PL+ ++ + A K+TGMLLE+
Sbjct: 173 ------------------ASALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEM 214
Query: 265 DNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQA 298
D E+L+++E ++LK+KV EA+ VL+ Q +QA
Sbjct: 215 DQTEVLHLIESPDALKAKVAEAMEVLRNAQQQQA 248
>gi|351706751|gb|EHB09670.1| Polyadenylate-binding protein 4-like protein [Heterocephalus
glaber]
Length = 370
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 39/45 (86%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G S+GFG +CFSSPEEA KA+TEMNGR++GSK L +ALAQR
Sbjct: 325 MKEEGYSRGFGLICFSSPEEAAKALTEMNGRVLGSKALSIALAQR 369
Score = 54.3 bits (129), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A +AV EMNG+ + + ++V AQ+K +R+A L + Q
Sbjct: 227 GKSKGFGFVSFESHEAAKRAVEEMNGKDMNGQLVFVGRAQKKVERQAELKHMFEQ 281
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 28/82 (34%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F S A A+ +MNG++I +P++VA + ++DR+A L S+ +
Sbjct: 130 MSDDQGSKGYAFVHFQSQSAANCAIEQMNGKVINDRPVFVAPFKPRKDREAELRSRASE- 188
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G G F
Sbjct: 189 FTNVYIKNFGDDMDDERLQGVF 210
>gi|156064711|ref|XP_001598277.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980]
gi|154691225|gb|EDN90963.1| hypothetical protein SS1G_00363 [Sclerotinia sclerotiorum 1980
UF-70]
Length = 784
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 34/59 (57%), Positives = 47/59 (79%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
KQ+LGE LFP IQ + PELAGKITGMLLE++N EL+ ++E + SL++KV+EA+ V +
Sbjct: 701 KQILGEALFPKIQVLQPELAGKITGMLLEMENQELINLIEDDASLRAKVDEALTVYDEY 759
Score = 55.5 bits (132), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV F + E A AV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 277 TESGKSRGFGFVNFINHEHAATAVDELNGKDFKGQDLYVGRAQKKHEREEELRRSY 332
Score = 44.3 bits (103), Expect = 0.077, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A +A+ +NG ++ K ++V K+DR KA+
Sbjct: 183 DESGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVFVGHHIPKKDRQSKFEEMKANFT 242
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 243 NIYVKNI 249
>gi|218200922|gb|EEC83349.1| hypothetical protein OsI_28748 [Oryza sativa Indica Group]
Length = 252
Score = 75.1 bits (183), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 28/154 (18%)
Query: 154 GQSTMGPRG--GGPMQAPGPASVSAAGRQTGGY-------NKYPVRNPGTQPQAQIGGIQ 204
G M PRG GG A G A R GG + P+ + G PQ IG +
Sbjct: 100 GHQQMLPRGSRGGYRYASGRGMPDNAFRGVGGLVPSPYEMGRMPLSDAGAPPQVPIGAL- 158
Query: 205 PAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEI 264
++ LA + P +Q+ MLGE L+PL+ ++ + A K+TGMLLE+
Sbjct: 159 ------------------ASALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEM 200
Query: 265 DNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQA 298
D E+L+++E ++LK+KV EA+ VL+ Q +QA
Sbjct: 201 DQTEVLHLIESPDALKAKVAEAMEVLRNAQQQQA 234
>gi|432097499|gb|ELK27684.1| Polyadenylate-binding protein 4-like protein [Myotis davidii]
Length = 370
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 40/45 (88%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+GRS+GFG +CFSSPEEA +A+ EMNGR++GSKP+ +ALAQR
Sbjct: 325 MQEEGRSRGFGLICFSSPEEAARAMAEMNGRLLGSKPVNIALAQR 369
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G+SKGFGFV F + E A +AV +NGR I + ++V AQ+K +R+A L + QR
Sbjct: 227 GKSKGFGFVSFDTHEAAKRAVDIVNGREIFGQQVFVGRAQKKAERQAELKQLFEQR 282
Score = 42.7 bits (99), Expect = 0.20, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 39/71 (54%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M +D S+G+GFV F + A +A+ EMNG ++ L+V + + DR+A L ++
Sbjct: 130 MCDDQGSRGYGFVHFQNQAAADRAIEEMNGVLLKDFRLFVGPFKNRRDREAELQNK-ASE 188
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 189 FTNIYIKNFGD 199
>gi|222640326|gb|EEE68458.1| hypothetical protein OsJ_26852 [Oryza sativa Japonica Group]
Length = 252
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 53/154 (34%), Positives = 79/154 (51%), Gaps = 28/154 (18%)
Query: 154 GQSTMGPRG--GGPMQAPGPASVSAAGRQTGGY-------NKYPVRNPGTQPQAQIGGIQ 204
G M PRG GG A G A R GG + P+ + G PQ IG +
Sbjct: 100 GHQQMLPRGSRGGYRYASGRGMPDNAFRGVGGLVPSPYEMGRMPLSDAGAPPQVPIGAL- 158
Query: 205 PAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEI 264
++ LA + P +Q+ MLGE L+PL+ ++ + A K+TGMLLE+
Sbjct: 159 ------------------ASALANSPPDQQRLMLGESLYPLVDQLEHDQAAKVTGMLLEM 200
Query: 265 DNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQA 298
D E+L+++E ++LK+KV EA+ VL+ Q +QA
Sbjct: 201 DQTEVLHLIESPDALKAKVAEAMEVLRNAQQQQA 234
>gi|413918857|gb|AFW58789.1| hypothetical protein ZEAMMB73_983608 [Zea mays]
Length = 412
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 35/52 (67%), Positives = 43/52 (82%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
++G SKG GFV FS+ EEA++A+TEMNG++I KPLYVA AQRKEDRKA L
Sbjct: 350 DQNGLSKGSGFVAFSTREEASQALTEMNGKMISGKPLYVAFAQRKEDRKAML 401
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 24/60 (40%), Positives = 39/60 (65%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
DG+S+ FGF+ F +P+ A+ AV E+NG+ I K YV AQ+K +R+ L ++ Q + +
Sbjct: 249 DGKSRCFGFINFENPDAASHAVQELNGKKINDKEWYVGRAQKKSEREMELKRRFEQSLKD 308
Score = 45.8 bits (107), Expect = 0.023, Method: Compositional matrix adjust.
Identities = 21/49 (42%), Positives = 31/49 (63%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+ E G+SKGFGFV + E A A+ +NG +I KP++V RK++R
Sbjct: 155 VDEAGQSKGFGFVQYDKEEAAQNAIKSLNGMLINDKPVFVGPFVRKQER 203
>gi|146101854|ref|XP_001469222.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|398023673|ref|XP_003864998.1| poly(a) binding protein, putative [Leishmania donovani]
gi|134073591|emb|CAM72325.1| poly(A)-binding protein 2 [Leishmania infantum JPCM5]
gi|322503234|emb|CBZ38319.1| poly(a) binding protein, putative [Leishmania donovani]
Length = 585
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+ +LA P++QK +LGERL+ I R +P +A KITGMLLE+DN+E+L ML+ L SK
Sbjct: 512 AAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILNMLDSPTMLDSK 571
Query: 283 VEEAVAVLQAHQA 295
+ EA VL H +
Sbjct: 572 IAEAQDVLNRHMS 584
>gi|401429856|ref|XP_003879410.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495660|emb|CBZ30966.1| putative poly(a) binding protein [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 594
Score = 75.1 bits (183), Expect = 4e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+ +LA P++QK +LGERL+ I R +P +A KITGMLLE+DN+E+L ML+ L SK
Sbjct: 521 AAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILNMLDSPTMLDSK 580
Query: 283 VEEAVAVLQAHQA 295
+ EA VL H +
Sbjct: 581 IAEAQDVLNRHMS 593
>gi|302811197|ref|XP_002987288.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
gi|302815025|ref|XP_002989195.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300143095|gb|EFJ09789.1| hypothetical protein SELMODRAFT_269487 [Selaginella moellendorffii]
gi|300144923|gb|EFJ11603.1| hypothetical protein SELMODRAFT_269256 [Selaginella moellendorffii]
Length = 567
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 34/56 (60%), Positives = 45/56 (80%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G SKG GFV FS+ + A +AV +MNG++IGSKPLYVA+AQ+KE+RKA L +Q+ R
Sbjct: 331 GHSKGSGFVAFSTSDAALRAVAQMNGKMIGSKPLYVAMAQKKEERKAKLEAQFASR 386
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 36/74 (48%), Positives = 54/74 (72%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
+ ++ LA+A P++Q+ MLGE+L+PL+ + AGKITGMLLE+D E+L++LE E+L
Sbjct: 475 VLASHLASATPEQQRIMLGEQLYPLVDCIEHNHAGKITGMLLEMDQTEVLHLLESPEALN 534
Query: 281 SKVEEAVAVLQAHQ 294
KV EA+ VL+ Q
Sbjct: 535 LKVSEAMEVLRDSQ 548
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/54 (48%), Positives = 39/54 (72%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
DG+SK FGFV F +PE+A KAV +++G K LYV+ AQ+K +R+A L +++
Sbjct: 228 DGKSKCFGFVNFENPEDAVKAVEDLHGTTFQDKELYVSRAQKKNEREAELKAKF 281
>gi|52221255|gb|AAU29548.1| poly(A)-binding protein [Crithidia fasciculata]
Length = 564
Score = 74.7 bits (182), Expect = 5e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+ +LA P++QK +LGERL+ I R +P +A KITGMLLE+DN+E+L ML+ L SK
Sbjct: 491 AAVLANLNPEQQKNVLGERLYSYIVRNHPSVAAKITGMLLEMDNSEILNMLDSPVVLDSK 550
Query: 283 VEEAVAVLQAHQA 295
+ EA VL H +
Sbjct: 551 IAEAQDVLNRHMS 563
>gi|348582138|ref|XP_003476833.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Cavia porcellus]
Length = 482
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 32/45 (71%), Positives = 40/45 (88%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+ KGFG VCFSSPEEA KA+T+MNGR++GSKPL +ALA+R
Sbjct: 437 MEEEGQRKGFGLVCFSSPEEAAKAMTQMNGRVLGSKPLNIALAKR 481
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/49 (57%), Positives = 36/49 (73%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
G+SKGFGFV F S E A KAV EMNG+ I + ++V AQ+KE+R+A L
Sbjct: 339 GKSKGFGFVSFDSHEAAKKAVEEMNGKDINGQLVFVGRAQKKEERQAEL 387
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 27/82 (32%), Positives = 44/82 (53%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F S A A+ EMNG++I + + VA + + DR+A L ++ +
Sbjct: 242 MSDDQGSKGYAFVHFQSQSAADCAIQEMNGKVIRDRQVLVAPFRSRRDREAELRTRTSE- 300
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ G F
Sbjct: 301 FTNVYVKNFGEDMDDERLQGVF 322
>gi|356548313|ref|XP_003542547.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 495
Score = 74.3 bits (181), Expect = 6e-11, Method: Compositional matrix adjust.
Identities = 35/58 (60%), Positives = 41/58 (70%), Gaps = 1/58 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M +D G SKGFGFVCFS+PEEA KAV NG KPLY+A+AQRK++RK L Y
Sbjct: 326 MRDDKGISKGFGFVCFSNPEEANKAVMSFNGCTFHRKPLYIAIAQRKKERKTQLNLHY 383
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
++G SKGF FV + +P++A KA+ MNG GSK LYVA AQ+K +R+ L Q+ ++
Sbjct: 225 DDNGLSKGFAFVNYENPDDAKKAMEAMNGLQFGSKYLYVARAQKKAEREQILHRQFEEK 283
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 25/49 (51%), Positives = 33/49 (67%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
MSEDG+SKG+GFV F E A A+ ++NG +G+K +YV RK DR
Sbjct: 133 MSEDGKSKGYGFVQFEWEESANNAIEKLNGSTVGNKQIYVGKFVRKGDR 181
>gi|154345147|ref|XP_001568515.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|134065852|emb|CAM43630.1| putative poly(A)-binding protein 2 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 579
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+ +LA P++QK +LGERL+ I R +P +A KITGMLLE+DN+E+L ML+ L SK
Sbjct: 506 AAVLANLNPEQQKNVLGERLYSYIVRSHPSVAAKITGMLLEMDNSEILSMLDSPVMLDSK 565
Query: 283 VEEAVAVLQAHQA 295
+ EA VL H +
Sbjct: 566 IAEAQDVLNRHMS 578
>gi|417399827|gb|JAA46899.1| Putative polyadenylate-binding protein rrm superfamily [Desmodus
rotundus]
Length = 370
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 31/45 (68%), Positives = 39/45 (86%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+GRSKGFG +CFS PEEATKA+ EMNG+++GSK + +ALAQR
Sbjct: 325 MEEEGRSKGFGLICFSCPEEATKAMAEMNGQVLGSKAINIALAQR 369
Score = 51.2 bits (121), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 25/55 (45%), Positives = 36/55 (65%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F + E A +AV MNG+ I + ++V AQ+K +R+A L + Q
Sbjct: 227 GKSKGFGFVSFDTHEAAQRAVEYMNGKDICGQMVFVGRAQKKAERQAELKQMFEQ 281
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D S+G+ FV F S A +A+ EMNG ++ + L+V + +++R+A L ++
Sbjct: 130 MSDDKGSRGYAFVHFQSQSAADRAIEEMNGALLKNCRLFVGPFKNRKEREAELQNK-ANE 188
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 189 FTNVYIKNFGD 199
>gi|226358689|gb|ACO51197.1| poly A binding protein, cytoplasmic 1 a [Hypophthalmichthys
nobilis]
Length = 290
Score = 74.3 bits (181), Expect = 7e-11, Method: Compositional matrix adjust.
Identities = 33/38 (86%), Positives = 35/38 (92%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPL 38
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPL
Sbjct: 253 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPL 290
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A +AV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 152 DESGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQ 209
Score = 42.4 bits (98), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 43/70 (61%), Gaps = 2/70 (2%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R A + ++ +
Sbjct: 60 DENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKERGAEMGAR-AKEF 117
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 118 TNVYIKNFGE 127
>gi|357465579|ref|XP_003603074.1| Poly(A)-binding protein [Medicago truncatula]
gi|355492122|gb|AES73325.1| Poly(A)-binding protein [Medicago truncatula]
Length = 622
Score = 73.9 bits (180), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+G GFV FS+PEEAT+A+ EMNG+++ KPLYVA AQ+KE+RKA L +Q+ Q
Sbjct: 343 GISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLQAQFSQ 397
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M G SKG+GFV F + E A A+ ++NG ++ KP+YV QRK+DR L++
Sbjct: 145 MDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNN 204
Query: 61 I 61
+
Sbjct: 205 V 205
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F + + A +AV +NG+ K YV A +K +R+ L ++ Q +
Sbjct: 239 DGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSM 296
>gi|302500992|ref|XP_003012489.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
gi|291176047|gb|EFE31849.1| hypothetical protein ARB_01449 [Arthroderma benhamiae CBS 112371]
Length = 801
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 36/67 (53%), Positives = 52/67 (77%), Gaps = 1/67 (1%)
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
AA +PQ QKQMLGE ++P I PELAGKITGMLLE+DN+EL+ +++ + +L++KV+EA
Sbjct: 710 AAPEPQ-QKQMLGEAIYPKILAQQPELAGKITGMLLEMDNSELIGLVDDDVALRAKVDEA 768
Query: 287 VAVLQAH 293
+ V +
Sbjct: 769 LTVYDEY 775
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV FS E A+ AV +N + + LYV AQ+K +R+ L QY
Sbjct: 274 NETGKSRGFGFVNFSDHEAASAAVEALNEYELKGQKLYVGRAQKKHEREEELRKQY 329
Score = 45.4 bits (106), Expect = 0.032, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E AT A+ +NG ++ K ++V K+DR KA+
Sbjct: 180 DEYGNSKGYGFVHYETAEAATNAIKHVNGMLLNEKKVFVGHHIAKKDRQSKFEEMKANFT 239
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 240 NIYVKNV 246
>gi|358386241|gb|EHK23837.1| hypothetical protein TRIVIDRAFT_169516 [Trichoderma virens Gv29-8]
Length = 747
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 35/63 (55%), Positives = 48/63 (76%)
Query: 237 MLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAK 296
+LGE +FP IQ + ELAGKITGMLLE+DN+EL+ ++E +LK+KV+EA+AV +
Sbjct: 674 ILGELIFPKIQAINAELAGKITGMLLEMDNSELVNLIEDEAALKAKVDEALAVYDEYVKS 733
Query: 297 QAA 299
QAA
Sbjct: 734 QAA 736
Score = 52.0 bits (123), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 23/56 (41%), Positives = 36/56 (64%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+ +GFGFV F++ E A KAV ++NG+ + LYV AQ+K +R+ L Y
Sbjct: 274 DQEGKPRGFGFVNFTTHEAAFKAVEDLNGKDFRGQELYVGRAQKKHEREEELRKSY 329
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 181 DENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFT 240
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I ++ + +LF+
Sbjct: 241 NVYVKNIGPDVTDDEFRELFE 261
>gi|302920668|ref|XP_003053121.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
gi|256734061|gb|EEU47408.1| hypothetical protein NECHADRAFT_59146 [Nectria haematococca mpVI
77-13-4]
Length = 742
Score = 73.9 bits (180), Expect = 9e-11, Method: Compositional matrix adjust.
Identities = 33/57 (57%), Positives = 46/57 (80%)
Query: 237 MLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+LGE +FP IQ + ELAGKITGMLLE+DN+EL+ ++E + SLK+KV+EA+AV +
Sbjct: 680 ILGELIFPKIQAINSELAGKITGMLLEMDNSELVNLIEDDSSLKAKVDEALAVYDEY 736
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV F++ E A KAV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 275 DQEGKSRGFGFVNFTTHESAAKAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSY 330
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/68 (33%), Positives = 39/68 (57%), Gaps = 7/68 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 182 DENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 241
Query: 55 SQYMQRIA 62
+ Y++ I+
Sbjct: 242 NVYVKNIS 249
>gi|33504434|emb|CAD44189.1| putative poly(A) binding protein [Mangifera indica]
Length = 130
Score = 73.6 bits (179), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 46/56 (82%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G S+G GFV F++PEEA++A+ EMNG+++ KPLYVALAQRKE R+A L +Q+ Q
Sbjct: 50 NGISRGSGFVAFTTPEEASRAILEMNGKMVVGKPLYVALAQRKEVRRARLQAQFSQ 105
>gi|294890308|ref|XP_002773127.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
gi|239878074|gb|EER04943.1| conserved hypothetical protein [Perkinsus marinus ATCC 50983]
Length = 57
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 35/56 (62%), Positives = 46/56 (82%)
Query: 237 MLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
MLGE+L+ IQR+ P+LAGKITGM+LE+DN+ELL +LE L+SKV+EA+ VLQ
Sbjct: 1 MLGEQLYTHIQRIQPQLAGKITGMMLEMDNSELLILLESESQLRSKVDEALMVLQT 56
>gi|217074874|gb|ACJ85797.1| unknown [Medicago truncatula]
Length = 494
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 34/55 (61%), Positives = 45/55 (81%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+G GFV FS+PEEAT+A+ EMNG+++ KPLYVA AQ+KE+RKA L +Q+ Q
Sbjct: 343 GISRGSGFVAFSTPEEATRALAEMNGKMVAGKPLYVAPAQKKEERKARLPAQFSQ 397
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/61 (39%), Positives = 36/61 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M G SKG+GFV F + E A A+ ++NG ++ KP+YV QRK+DR L++
Sbjct: 145 MDASGLSKGYGFVQFENEESAQSAIDKLNGMLLNDKPVYVGHFQRKQDRDNALSNAKFNN 204
Query: 61 I 61
+
Sbjct: 205 V 205
Score = 39.3 bits (90), Expect = 2.2, Method: Compositional matrix adjust.
Identities = 22/58 (37%), Positives = 34/58 (58%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F + + A +AV +NG+ K YV A +K +R+ L ++ Q +
Sbjct: 239 DGKSKCFGFVNFENADAAAEAVEALNGKKFDDKEWYVGKALKKYERELELKERHEQSM 296
>gi|389603137|ref|XP_001568596.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
gi|322505742|emb|CAM43715.2| putative polyadenylate-binding protein 1 [Leishmania braziliensis
MHOM/BR/75/M2904]
Length = 554
Score = 73.2 bits (178), Expect = 1e-10, Method: Compositional matrix adjust.
Identities = 37/71 (52%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MSE G S+GFGFV FS+ +EA A+ EMNGR++ KPL V +AQR++ R L Q+ QR
Sbjct: 340 MSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQR 399
Query: 61 IANMRMQQMGQ 71
+ M M+QM Q
Sbjct: 400 L-QMMMRQMHQ 409
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 47/113 (41%), Positives = 62/113 (54%), Gaps = 10/113 (8%)
Query: 192 PGTQPQAQIGGIQPAAAG-VQAV--HVQGQEP-------LTSTMLAAAQPQEQKQMLGER 241
P PQ G P+A G VQA H GQ P +T L + PQEQ+ LG+R
Sbjct: 440 PMPSPQQSQGFATPSAVGFVQATPKHSPGQVPETPPLPPITPQELESMSPQEQRAALGDR 499
Query: 242 LFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
LF + + PELA KITGM LE++ E +L + L+ +V EA+ VL+AHQ
Sbjct: 500 LFLKVYEIAPELAPKITGMFLEMNPKEAYELLNDQKRLEERVTEALCVLKAHQ 552
>gi|357510891|ref|XP_003625734.1| Polyadenylate binding protein [Medicago truncatula]
gi|355500749|gb|AES81952.1| Polyadenylate binding protein [Medicago truncatula]
Length = 613
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/50 (68%), Positives = 39/50 (78%), Gaps = 1/50 (2%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
M +D G SKGFGFVCFS+PEEA KAV +G + KPLYV+LAQRKEDR
Sbjct: 324 MRDDKGISKGFGFVCFSTPEEANKAVNSFHGFMFHGKPLYVSLAQRKEDR 373
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/57 (50%), Positives = 41/57 (71%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+G SKGFGFV F +PE+A +A+ MNG +GSK LYVA AQ+K +R+ L Q+ ++
Sbjct: 225 NGMSKGFGFVNFDNPEDAKRAMETMNGLQLGSKILYVARAQKKAEREQILHQQFEEK 281
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MSEDG+SKG+GFV F + E A A+ +NG ++G K +YV +K DR ++S R
Sbjct: 131 MSEDGKSKGYGFVQFETEESANAAIERLNGYLVGDKQIYVGKFVKKSDR---ISSGPDTR 187
Query: 61 IANMRMQQM 69
N+ M+ +
Sbjct: 188 YTNLYMKNL 196
>gi|359322009|ref|XP_850457.3| PREDICTED: uncharacterized protein LOC483825 [Canis lupus
familiaris]
Length = 1009
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 30/46 (65%), Positives = 39/46 (84%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
M E+GRSKGFG +CFSS +EA +A+ EMNGR++GSKPL +ALAQ +
Sbjct: 463 MREEGRSKGFGLICFSSADEAARALAEMNGRVLGSKPLSIALAQSR 508
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 54/175 (30%), Positives = 83/175 (47%), Gaps = 22/175 (12%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN- 63
GRS+GFGFV F S E A +AV +NGR + +PL+V AQRK +R+A L + QR +
Sbjct: 365 GRSRGFGFVSFESHEAARRAVEALNGRQVDGQPLFVGRAQRKAERQAELRRAFEQRQQDG 424
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGF 123
+R Q +L+ L + +G +I MR G++ +GF
Sbjct: 425 LRRAQGAKLYVKNLDDAVDEDRLRREFSGFGAVSRVKI-----------MREEGRS-KGF 472
Query: 124 PNIPQFRSAPRASTGQTVIRGANMSARPIT-----GQSTMGPRGGGPMQAPGPAS 173
I F SA A+ + G + ++P++ + + PRG + A GP S
Sbjct: 473 GLIC-FSSADEAARALAEMNGRVLGSKPLSIALAQSRRCLQPRG---LAAAGPCS 523
>gi|167519406|ref|XP_001744043.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163778005|gb|EDQ91621.1| predicted protein [Monosiga brevicollis MX1]
Length = 563
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 36/73 (49%), Positives = 50/73 (68%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA EQK +LGE+LFPLIQ+ Y E AGKITGMLL ++ AE+L +L+ + LK + E
Sbjct: 491 LAHMTDAEQKNLLGEKLFPLIQQEYHERAGKITGMLLGMETAEVLNLLQDQDQLKQRARE 550
Query: 286 AVAVLQAHQAKQA 298
A +L H++ +A
Sbjct: 551 AYDLLVKHESNKA 563
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/55 (56%), Positives = 39/55 (70%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
+G S+GFGFV F S +EA A+ EM+G +I KPLYVALA RK DR+ LAS+
Sbjct: 325 DNNGDSRGFGFVNFDSADEAAAAIQEMHGSMIDGKPLYVALALRKVDRQKQLASR 379
Score = 41.2 bits (95), Expect = 0.53, Method: Compositional matrix adjust.
Identities = 21/53 (39%), Positives = 32/53 (60%), Gaps = 1/53 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHL 53
E+ +S+GFGFV F + E A AV MN + I + + L+V A +K +R+ L
Sbjct: 221 DENDKSRGFGFVNFENSEAANAAVEAMNEKEIETDRKLFVGRAMKKHEREREL 273
>gi|168018575|ref|XP_001761821.1| predicted protein [Physcomitrella patens subsp. patens]
gi|162686876|gb|EDQ73262.1| predicted protein [Physcomitrella patens subsp. patens]
Length = 153
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 53/69 (76%)
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P +Q+ MLGE+L+PL+ ++ + AGK+TGMLLE+D E+L+++E ++LK+KV EA+ VL
Sbjct: 71 PDQQRAMLGEQLYPLVDQLEHDFAGKVTGMLLEMDQTEVLHLIESPDALKAKVAEAMEVL 130
Query: 291 QAHQAKQAA 299
+ QA +A
Sbjct: 131 RMAQAVPSA 139
>gi|356514396|ref|XP_003525892.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
Length = 630
Score = 72.8 bits (177), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 53/69 (76%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++ LA A P++Q+ MLGE L+PL+ ++ E A K+TGMLLE+D E+L+++E ++LK+K
Sbjct: 537 ASALANATPEQQRTMLGEALYPLVDKLEHETAAKVTGMLLEMDQPEVLHLIESPDALKAK 596
Query: 283 VEEAVAVLQ 291
V EA+ VL+
Sbjct: 597 VVEAMDVLR 605
Score = 55.8 bits (133), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 25/50 (50%), Positives = 34/50 (68%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
DG+SKGFGFV F++ E+A KAV +NG+ K YV AQ+K +R+ L
Sbjct: 239 DGKSKGFGFVNFANVEDAAKAVEALNGKNFDGKEWYVGKAQKKSERELEL 288
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 24/50 (48%), Positives = 34/50 (68%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLA 54
G+SKG GFV F S E A A+ ++NG +I K +YV QRK+DR++ L+
Sbjct: 149 GQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVYVGPFQRKQDRESALS 198
>gi|109290424|gb|ABG29418.1| putative poly A binding protein [Culex pipiens pipiens]
Length = 50
Score = 72.4 bits (176), Expect = 2e-10, Method: Composition-based stats.
Identities = 36/46 (78%), Positives = 43/46 (93%)
Query: 251 PELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAK 296
P +AGKITGMLLEIDN+EL++MLEH+ESLK+KV+EAVAVL AHQ K
Sbjct: 1 PSIAGKITGMLLEIDNSELVHMLEHSESLKAKVDEAVAVLHAHQQK 46
>gi|62321453|dbj|BAD94856.1| poly(A)-binding protein [Arabidopsis thaliana]
Length = 126
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 37/77 (48%), Positives = 58/77 (75%), Gaps = 4/77 (5%)
Query: 220 PLT----STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEH 275
PLT ++ L+ A P++Q+ MLGE L+PL++++ E A K+TGMLLE+D E+L++LE
Sbjct: 34 PLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLES 93
Query: 276 NESLKSKVEEAVAVLQA 292
E+LK+KV EA+ VL++
Sbjct: 94 PEALKAKVAEAMDVLRS 110
>gi|355709046|gb|AES03463.1| poly binding protein, cytoplasmic 1 [Mustela putorius furo]
Length = 102
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 32/37 (86%), Positives = 34/37 (91%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKP 37
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KP
Sbjct: 66 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKP 102
>gi|340517112|gb|EGR47358.1| polyadenylate-binding protein [Trichoderma reesei QM6a]
Length = 745
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 34/62 (54%), Positives = 47/62 (75%)
Query: 237 MLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAK 296
+LGE +FP IQ + ELAGKITGMLLE+DN+EL+ ++E +LK+KV+EA+AV +
Sbjct: 672 ILGELIFPKIQAINSELAGKITGMLLEMDNSELVNLIEDEAALKAKVDEALAVYDEYVKS 731
Query: 297 QA 298
QA
Sbjct: 732 QA 733
Score = 54.7 bits (130), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+++GFGFV F++ E A KAV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 274 DQEGKTRGFGFVNFTTHEAAFKAVEELNGKDFRGQDLYVGRAQKKHEREEELRKSY 329
Score = 51.6 bits (122), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 27/81 (33%), Positives = 46/81 (56%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 181 DENGNSKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFT 240
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ IA ++ + QLF+
Sbjct: 241 NVYVKNIAPDVTDEDFRQLFE 261
>gi|356510461|ref|XP_003523956.1| PREDICTED: polyadenylate-binding protein 2-like [Glycine max]
gi|83853808|gb|ABC47841.1| poly(A)-binding protein [Glycine max]
Length = 630
Score = 72.4 bits (176), Expect = 2e-10, Method: Compositional matrix adjust.
Identities = 33/69 (47%), Positives = 53/69 (76%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++ LA A P++Q+ MLGE L+PL+ ++ E A K+TGMLLE+D E+L+++E ++LK+K
Sbjct: 537 ASALANATPEQQRTMLGEALYPLVDKLEHEAAAKVTGMLLEMDQPEVLHLIESPDALKAK 596
Query: 283 VEEAVAVLQ 291
V EA+ VL+
Sbjct: 597 VVEAMDVLK 605
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
DG+SKGFGFV F++ ++A KAV +NG+ K YV AQ+K +R+ L Q+ Q
Sbjct: 239 DGKSKGFGFVNFANVDDAAKAVEALNGKNFDGKEWYVGKAQKKSERELELKGQHEQ 294
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 22/50 (44%), Positives = 33/50 (66%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLA 54
G+SKG GFV F S E A A+ ++NG +I K ++V RK+DR++ L+
Sbjct: 149 GQSKGHGFVQFESEESAQNAIDKLNGMLINDKQVFVGPFLRKQDRESALS 198
>gi|308806325|ref|XP_003080474.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
gi|116058934|emb|CAL54641.1| polyadenylate-binding protein, putative / PABP, putative (ISS)
[Ostreococcus tauri]
Length = 504
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 40/44 (90%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48
G S+G FV FSSP+EAT+AVTEMNG+++G+KPLYVALAQRKE+
Sbjct: 350 GASRGSAFVAFSSPDEATRAVTEMNGKMVGAKPLYVALAQRKEE 393
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G+SKGFGFVCF SPE A AV ++G K V AQ+K +R+A L +++ +
Sbjct: 244 DEEGKSKGFGFVCFESPEGAASAVENLDGYTEDEKTWVVCRAQKKAEREAELKAKF-EAE 302
Query: 62 ANMRMQQM 69
RM++M
Sbjct: 303 RRERMEKM 310
Score = 44.7 bits (104), Expect = 0.059, Method: Compositional matrix adjust.
Identities = 25/78 (32%), Positives = 43/78 (55%), Gaps = 5/78 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR----KAHLASQ 56
M G SKG+GFV F + E A A+ +NG + K +YV QR+ DR +A +
Sbjct: 153 MDSAGNSKGYGFVQFETAEAAQAAIDNVNGMELNDKQVYVGPFQRRADRSTQGEAKFNNV 212
Query: 57 YMQRIA-NMRMQQMGQLF 73
Y++ ++ N+ +++ + F
Sbjct: 213 YVKNLSENLSDEKLREKF 230
>gi|255538240|ref|XP_002510185.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223550886|gb|EEF52372.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 658
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 52/69 (75%)
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P+ Q+ +LGE L+PL+ ++ E A K+TGMLLE+D E+L++LE E+LK+KV EA+ VL
Sbjct: 572 PEHQRTLLGESLYPLVDQLEHESAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 631
Query: 291 QAHQAKQAA 299
++ A+Q A
Sbjct: 632 RSVAAQQHA 640
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 37/58 (63%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DG+SK FGFV F + + A KAV +NG+ I K YV AQ+K +R+ L SQ+ Q +
Sbjct: 251 DGKSKCFGFVNFENTDAAAKAVESLNGKKIDDKEWYVGKAQKKSERELELKSQFEQSM 308
Score = 43.9 bits (102), Expect = 0.087, Method: Compositional matrix adjust.
Identities = 18/47 (38%), Positives = 30/47 (63%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+S+G+GFV F + E A A+ ++NG ++ K +YV RK +R +
Sbjct: 162 GQSRGYGFVQFDNEEAAQNAIDKLNGMLLNDKQVYVGHFLRKHERDS 208
>gi|62321231|dbj|BAD94406.1| putative poly(A) binding protein [Arabidopsis thaliana]
Length = 154
Score = 72.0 bits (175), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 34/69 (49%), Positives = 51/69 (73%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+T LA A P +Q+ +LGE L+PL+ ++ E A K+TGMLLE+D E+L++LE E+L +K
Sbjct: 55 ATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAK 114
Query: 283 VEEAVAVLQ 291
V EA+ VL+
Sbjct: 115 VSEALDVLR 123
>gi|443688976|gb|ELT91498.1| hypothetical protein CAPTEDRAFT_222053 [Capitella teleta]
Length = 868
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 33/76 (43%), Positives = 51/76 (67%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
+ ST + + +K + G RL+ IQ +PE A KITGMLLE+D+++L Y+L ++LK
Sbjct: 666 VISTNFDSGSLESRKHVFGVRLYHRIQPSHPEFARKITGMLLELDDSQLAYLLSDPDTLK 725
Query: 281 SKVEEAVAVLQAHQAK 296
KV+EAV +L+ H+ K
Sbjct: 726 DKVDEAVEILKEHEYK 741
>gi|115477976|ref|NP_001062583.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|46389987|dbj|BAD16229.1| putative poly(A)-binding protein [Oryza sativa Japonica Group]
gi|113630816|dbj|BAF24497.1| Os09g0115400 [Oryza sativa Japonica Group]
gi|125562753|gb|EAZ08133.1| hypothetical protein OsI_30396 [Oryza sativa Indica Group]
gi|125604734|gb|EAZ43770.1| hypothetical protein OsJ_28392 [Oryza sativa Japonica Group]
gi|169244485|gb|ACA50516.1| poly(A)-binding protein [Oryza sativa Japonica Group]
gi|215695451|dbj|BAG90618.1| unnamed protein product [Oryza sativa Japonica Group]
Length = 662
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 34/67 (50%), Positives = 49/67 (73%)
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P +Q+ MLGE L+PL+ ++ E A K+TGMLLE+D E+L++LE E+LK+KV EA+ VL
Sbjct: 575 PDQQRMMLGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 634
Query: 291 QAHQAKQ 297
+ Q Q
Sbjct: 635 RTAQQIQ 641
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 38/58 (65%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
DGRSK FGFV F SP++A +AV E+NG+ K YV AQ+K +R+ L ++ + +
Sbjct: 255 DGRSKCFGFVNFESPDDAAQAVQELNGKKFDDKEWYVGRAQKKSEREMELKEKFEKNL 312
Score = 40.4 bits (93), Expect = 0.93, Method: Compositional matrix adjust.
Identities = 18/46 (39%), Positives = 28/46 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
G SKG+GFV + E A A+ ++NG ++ K +YV RK++R
Sbjct: 165 GESKGYGFVQYERDEAAQAAIDKLNGMLMNDKKVYVGPFIRKQERD 210
>gi|444724951|gb|ELW65536.1| Polyadenylate-binding protein 1-like protein [Tupaia chinensis]
Length = 174
Score = 71.6 bits (174), Expect = 4e-10, Method: Compositional matrix adjust.
Identities = 37/63 (58%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
AVHV GQEPLT++ML AA +QKQM+GERL+PL M +AGKIT ML+EI +EL
Sbjct: 45 AVHVTGQEPLTASMLPAAPLHQQKQMIGERLYPL-SVMSTPMAGKITAMLVEIHTSELWL 103
Query: 272 MLE 274
+L+
Sbjct: 104 VLD 106
>gi|71659778|ref|XP_821609.1| poly(A)-binding protein [Trypanosoma cruzi strain CL Brener]
gi|459650|gb|AAC46487.1| poly(A) binding protein [Trypanosoma cruzi]
gi|515321|gb|AAC46489.1| poly(A) binding protein [Trypanosoma cruzi]
gi|2854066|gb|AAC02537.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|2854068|gb|AAC02538.1| poly(A)-binding protein [Trypanosoma cruzi]
gi|70886993|gb|EAN99758.1| poly(A)-binding protein, putative [Trypanosoma cruzi]
gi|407408287|gb|EKF31789.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
gi|407847529|gb|EKG03215.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi]
Length = 550
Score = 71.6 bits (174), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 39/83 (46%), Positives = 55/83 (66%), Gaps = 2/83 (2%)
Query: 211 QAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELL 270
Q++ QGQ ST+LA P++QK +LGERL+ I + P A K+TGMLLE+DN E+L
Sbjct: 467 QSLASQGQN--LSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEIL 524
Query: 271 YMLEHNESLKSKVEEAVAVLQAH 293
+L+ L +KV+EA+ VL H
Sbjct: 525 NLLDTPGLLDAKVQEALEVLNRH 547
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 39/123 (31%), Positives = 57/123 (46%), Gaps = 20/123 (16%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRI-IGSKPLYVALAQRKEDRKAHLASQYMQRIANMR 65
S+ FGFV F A++A+ E++G +G +PL+V A RK+ R+ Q + +MR
Sbjct: 328 SRCFGFVSFKEQSAASRAIQELHGSTALGPRPLFVTYALRKDARR--------QTLEDMR 379
Query: 66 MQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRP--QPRWAAAP-------QMRPS 116
+Q ++ QP PQ F GP M P PR + P Q+RP
Sbjct: 380 NKQ-PRMRQPPMGSLMGGMMGPQ-LGFMGPQAMFNGVPFVNPRMSMMPTPMGMGGQLRPM 437
Query: 117 GQT 119
G T
Sbjct: 438 GPT 440
>gi|242096254|ref|XP_002438617.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
gi|241916840|gb|EER89984.1| hypothetical protein SORBIDRAFT_10g022900 [Sorghum bicolor]
Length = 631
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 33/77 (42%), Positives = 59/77 (76%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+T +A+A+P +Q+Q+LG +L+ L++++ + AGK+TGMLLE+D ++L +L+ E L++K
Sbjct: 526 TTAVASAEPADQQQILGNKLYALVEQLEHDHAGKVTGMLLEMDKVKILQLLQSPEVLRAK 585
Query: 283 VEEAVAVLQAHQAKQAA 299
V EA+ VLQ +A+ +A
Sbjct: 586 VREAMDVLQRTKAEGSA 602
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/65 (41%), Positives = 42/65 (64%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G SK FGFV F PE A +AV + NG++I K LYV AQ+K +R+A L +++ Q +
Sbjct: 247 NGVSKCFGFVNFEKPEFALEAVKKANGKVINDKTLYVGRAQKKAERQAELKTKFKQEDRD 306
Query: 64 MRMQQ 68
++ +
Sbjct: 307 KKVDK 311
Score = 46.2 bits (108), Expect = 0.019, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 34/57 (59%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
G+SKG+GFV + + E A A+ +NG + + ++V L R+ +R+ + Y++ +
Sbjct: 162 GQSKGYGFVQYETEESAQDAINRLNGMLANDREMFVGLHMRRRNREVKFTNVYIKNL 218
>gi|402870468|ref|XP_003899242.1| PREDICTED: LOW QUALITY PROTEIN: polyadenylate-binding protein
4-like [Papio anubis]
Length = 496
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 39/44 (88%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M ++G+SKGFGF+CFSS E+ATKA+ EMNGR +GSKP+ +ALAQ
Sbjct: 451 MQQEGQSKGFGFICFSSLEDATKAMIEMNGRFLGSKPISIALAQ 494
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++V AQ+K +R+A L + Q
Sbjct: 353 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 407
Score = 50.4 bits (119), Expect = 9e-04, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 1/70 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F + A +A+ EMNGR++ S ++V + ++DR+A L S+ +
Sbjct: 256 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGRLLKSCKVFVGRFKNRKDREAELRSKASE- 314
Query: 61 IANMRMQQMG 70
N+ ++ G
Sbjct: 315 FTNIYIKNFG 324
>gi|339899318|ref|XP_001469326.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|398023903|ref|XP_003865113.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
gi|321398770|emb|CAM72432.2| putative polyadenylate-binding protein 1 [Leishmania infantum
JPCM5]
gi|322503349|emb|CBZ38434.1| polyadenylate-binding protein 1, putative [Leishmania donovani]
Length = 560
Score = 71.2 bits (173), Expect = 5e-10, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+SE G S+GFGFV FS+ +EA A+ EMNGR++ KPL V +AQR++ R L Q+ QR
Sbjct: 340 VSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQR 399
Query: 61 IANMRMQQMGQ 71
+ M M+QM Q
Sbjct: 400 L-QMMMRQMHQ 409
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
P+T L + PQEQ+ LG+RLF + + PELA KITGM LE+ E +L + L
Sbjct: 484 PITPQELESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQKRL 543
Query: 280 KSKVEEAVAVLQAHQ 294
+ +V EA+ VL+AHQ
Sbjct: 544 EERVTEALCVLKAHQ 558
Score = 40.0 bits (92), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRII----GSKPLYVALAQRKEDRKAHLASQY 57
E+G+S+G+GFV F A A+ +MNG K LYVA R+ R A L + +
Sbjct: 147 DEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAALVANF 206
>gi|389595349|ref|XP_003722897.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
gi|323364125|emb|CBZ13132.1| polyadenylate-binding protein 1 [Leishmania major strain Friedlin]
Length = 560
Score = 71.2 bits (173), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 36/71 (50%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+SE G S+GFGFV FS+ +EA A+ EMNGR++ KPL V +AQR++ R L Q+ QR
Sbjct: 340 VSESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQR 399
Query: 61 IANMRMQQMGQ 71
+ M M+QM Q
Sbjct: 400 L-QMMMRQMHQ 409
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
P+T L + PQEQ+ LG+RLF + + PELA KITGM LE+ E +L + L
Sbjct: 484 PITPQELESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQKRL 543
Query: 280 KSKVEEAVAVLQAHQ 294
+ +V EA+ VL+AHQ
Sbjct: 544 EERVTEALCVLKAHQ 558
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRII----GSKPLYVALAQRKEDRKAHLASQY 57
E+G+S+G+GFV F A A+ +MNG K LYVA R+ R A L + +
Sbjct: 147 DEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAALVANF 206
>gi|401409876|ref|XP_003884386.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
gi|325118804|emb|CBZ54355.1| hypothetical protein NCLIV_047860 [Neospora caninum Liverpool]
Length = 763
Score = 70.9 bits (172), Expect = 6e-10, Method: Compositional matrix adjust.
Identities = 34/64 (53%), Positives = 46/64 (71%), Gaps = 2/64 (3%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G S+ FGFVCF SPEEATKAVTEM+ +++ KPLYV LA+R+E R L ++ R+
Sbjct: 423 DERGVSRCFGFVCFMSPEEATKAVTEMHLKLVKGKPLYVGLAERREQRLMRLQQRF--RL 480
Query: 62 ANMR 65
++R
Sbjct: 481 PSLR 484
Score = 48.5 bits (114), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ- 59
+ E+G SKG+GFV + + E A A+ ++NG +IG K +YV R+ +R ++Y
Sbjct: 205 VDENGHSKGYGFVHYENEESARSAIDKVNGMLIGGKTVYVGPFIRRAERDNLAETKYTNV 264
Query: 60 RIANM 64
I NM
Sbjct: 265 YIKNM 269
>gi|124806145|ref|XP_001350640.1| polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|23496765|gb|AAN36320.1|AE014847_47 polyadenylate-binding protein, putative [Plasmodium falciparum 3D7]
gi|119352249|gb|ABL63812.1| polyadenylate-binding protein [Plasmodium falciparum]
Length = 875
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 32/56 (57%), Positives = 42/56 (75%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E +SKGFGFVCF+S EEA KAVTEM+ +II KPLYV LA+++E R + L ++
Sbjct: 484 DEKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 539
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 48/58 (82%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QKQ+LGE LFPL+ +P LAGKITGM+LE+DN+ELL +LE+ E LK K++EA+ VLQ
Sbjct: 815 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 872
Score = 41.6 bits (96), Expect = 0.40, Method: Compositional matrix adjust.
Identities = 24/78 (30%), Positives = 42/78 (53%), Gaps = 4/78 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH---LASQYM 58
E G+SK +GFV + E A +A+ ++NG +GSK +YV +K +R + + Y+
Sbjct: 138 DEFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYV 197
Query: 59 QRI-ANMRMQQMGQLFQP 75
+ ++ + QLF P
Sbjct: 198 KNFPDSVTETHLRQLFNP 215
>gi|170032722|ref|XP_001844229.1| RNA-binding protein [Culex quinquefasciatus]
gi|167873059|gb|EDS36442.1| RNA-binding protein [Culex quinquefasciatus]
Length = 201
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 43/55 (78%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E+G S+G+GFVCF +P EA +A+ MNGRI+ KPL+V +AQ+KE+R+ L +Q+
Sbjct: 72 ENGVSRGYGFVCFRTPYEAQRAIFLMNGRILDGKPLFVGIAQKKEERRKVLEAQF 126
>gi|388492458|gb|AFK34295.1| unknown [Medicago truncatula]
Length = 107
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 35/69 (50%), Positives = 53/69 (76%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+T LA A P++Q+ MLGE L+PL++++ A K+TGMLLE+D E+L+++E E+LK+K
Sbjct: 14 ATALANAPPEQQRTMLGEVLYPLVEKIEHAGAAKVTGMLLEMDQPEVLHLIESPEALKTK 73
Query: 283 VEEAVAVLQ 291
V EAV VL+
Sbjct: 74 VAEAVDVLR 82
>gi|293337013|ref|NP_001169661.1| uncharacterized protein LOC100383542 [Zea mays]
gi|224030689|gb|ACN34420.1| unknown [Zea mays]
Length = 442
Score = 70.9 bits (172), Expect = 7e-10, Method: Compositional matrix adjust.
Identities = 33/56 (58%), Positives = 41/56 (73%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
GRSKG GFV F++ E +A+ MNGRI+G KPLYV LAQ KE+RKA L + + QR
Sbjct: 316 GRSKGSGFVSFATAEAGQRAINRMNGRIVGKKPLYVGLAQPKEERKAMLMAHFAQR 371
Score = 63.2 bits (152), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 30/54 (55%), Positives = 38/54 (70%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
DG SK FGFV F PE A +AV + NG+ IG K LYV AQ+KE+RKA L +++
Sbjct: 212 DGASKCFGFVNFKKPEFAIEAVEKANGKAIGDKTLYVGRAQKKEERKAELKTRF 265
Score = 47.0 bits (110), Expect = 0.012, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
G+SKG+GFV + + E A A+ +NG + ++ ++V L R+ DR+ + Y++ +
Sbjct: 127 GQSKGYGFVQYETEESAEAAINGLNGMLANNRKMFVGLHMRRRDREVKFTNVYIKNL 183
>gi|358394883|gb|EHK44276.1| hypothetical protein TRIATDRAFT_79372 [Trichoderma atroviride IMI
206040]
Length = 746
Score = 70.5 bits (171), Expect = 9e-10, Method: Compositional matrix adjust.
Identities = 33/61 (54%), Positives = 45/61 (73%)
Query: 237 MLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAK 296
+LGE +FP IQ + ELAGKITGMLLE+DN EL+ ++E +LK+KV+EA+AV +
Sbjct: 673 ILGELIFPKIQAINSELAGKITGMLLEMDNTELVNLIEDEAALKAKVDEALAVYDEYVKS 732
Query: 297 Q 297
Q
Sbjct: 733 Q 733
Score = 55.1 bits (131), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV F++ E A KAV E+NG + LYV AQ+K +R+ L Y
Sbjct: 274 DQEGKSRGFGFVNFTTHEAAYKAVDELNGNDFRGQELYVGRAQKKHEREEELRKSY 329
Score = 47.4 bits (111), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 25/81 (30%), Positives = 45/81 (55%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A +A+ +NG ++ K +YV K+DR KA+
Sbjct: 181 DETGASKGYGFVHYETDEAAAQAIKHVNGMLLNEKKVYVGYHIPKKDRQSKFEEMKANFT 240
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I+ ++ + +LF+
Sbjct: 241 NVYVKNISPDVTDNEFRELFE 261
>gi|297851860|ref|XP_002893811.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
gi|297339653|gb|EFH70070.1| PAB1 binding protein 1 [Arabidopsis lyrata subsp. lyrata]
Length = 403
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/51 (58%), Positives = 43/51 (84%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
SKG GFV FS+ EEA+KA+ +MNG+++G+KP+YV+LAQ KE+ K HL +Q+
Sbjct: 262 SKGVGFVEFSTSEEASKAMLKMNGKVVGNKPIYVSLAQCKEEHKLHLHTQF 312
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/48 (45%), Positives = 32/48 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
++G+S+ FGFV F E A A+ +MNG I+ K L+V AQRK++R
Sbjct: 153 DKEGKSRMFGFVNFEKAEAAVTAIDKMNGTIVDEKELHVGRAQRKKNR 200
>gi|294879376|ref|XP_002768666.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239871376|gb|EER01384.1| glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 342
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M++D G S+GFGFVCFS+ EEATKAVT+M+ ++IG KPLYV + +++E R L +Y
Sbjct: 177 MTDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 234
>gi|294928940|ref|XP_002779243.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
gi|239888268|gb|EER11038.1| Glycine-rich RNA-binding protein, putative [Perkinsus marinus ATCC
50983]
Length = 238
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 45/58 (77%), Gaps = 1/58 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M++D G S+GFGFVCFS+ EEATKAVT+M+ ++IG KPLYV + +++E R L +Y
Sbjct: 115 MTDDKGVSRGFGFVCFSTHEEATKAVTDMHLKLIGGKPLYVGMHEKREQRLERLQQRY 172
>gi|260787218|ref|XP_002588651.1| hypothetical protein BRAFLDRAFT_101562 [Branchiostoma floridae]
gi|229273818|gb|EEN44662.1| hypothetical protein BRAFLDRAFT_101562 [Branchiostoma floridae]
Length = 2721
Score = 70.5 bits (171), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 45/60 (75%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q + P LAGKITGMLLE+ A+LL +L +SL+ +VEEAV ++ +H
Sbjct: 2321 HRQALGERLYPKVQALQPSLAGKITGMLLEMSPAQLLLLLASEDSLRQRVEEAVDIILSH 2380
>gi|302142289|emb|CBI19492.3| unnamed protein product [Vitis vinifera]
Length = 153
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 48/66 (72%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA A P +Q+ ML E L+PL+ ++ E+A K+TGMLLE+ E L++LE E+LKSKV E
Sbjct: 63 LANATPDQQRTMLSESLYPLVDQLEHEMAAKLTGMLLEMGQTEFLHLLESPEALKSKVAE 122
Query: 286 AVAVLQ 291
A+ VL+
Sbjct: 123 AMDVLR 128
>gi|224063493|ref|XP_002301171.1| predicted protein [Populus trichocarpa]
gi|222842897|gb|EEE80444.1| predicted protein [Populus trichocarpa]
Length = 657
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/67 (49%), Positives = 51/67 (76%)
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P++Q+ MLGE L+PL+ ++ + A K+TGMLLE+D E+L++LE E+LK+KV EA+ VL
Sbjct: 565 PEQQRTMLGEGLYPLVDQLEHDSAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 624
Query: 291 QAHQAKQ 297
+ A+Q
Sbjct: 625 RTVAAQQ 631
Score = 56.2 bits (134), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/70 (37%), Positives = 41/70 (58%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
DG+SK FGFV F + ++A KAV +NG+ K YV AQ+K +R+ L ++ Q + +
Sbjct: 246 DGKSKCFGFVNFENVDDAAKAVEALNGKKFDDKEWYVGKAQKKSERELELKGRFEQSLES 305
Query: 64 MRMQQMGQLF 73
+ Q L+
Sbjct: 306 VEKYQAVNLY 315
Score = 49.3 bits (116), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 23/57 (40%), Positives = 35/57 (61%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
G+SKG+GFV F S E A A+ ++NG +I K +YV RK++R + L++ I
Sbjct: 156 GQSKGYGFVQFDSEEAAQNAIDKLNGMLINDKQVYVGNFLRKQERDSALSNIKFNNI 212
>gi|340056243|emb|CCC50573.1| putative polyadenylate-binding protein 1 [Trypanosoma vivax Y486]
Length = 482
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 38/88 (43%), Positives = 53/88 (60%), Gaps = 8/88 (9%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G S+GFGFV F + ++A A+ EMNGR++ KPL V +AQR++ R L Q+ Q
Sbjct: 245 NGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRVQFQQ---- 300
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQPQR 91
RMQ M + +P S GG PQP+R
Sbjct: 301 -RMQMMLRHMRPMSLGG---KNFPQPRR 324
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/74 (37%), Positives = 46/74 (62%)
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
P++S L+ +EQ+ LG+RL+ + + P+ A KITGM LE+D + +L + + L
Sbjct: 405 PISSEDLSNMTLEEQRAALGDRLYIKVYEIAPDYAPKITGMFLEMDMKDAFVLLSNQKLL 464
Query: 280 KSKVEEAVAVLQAH 293
+ KV EA+ VL+ H
Sbjct: 465 EDKVTEALCVLKVH 478
>gi|291407988|ref|XP_002720199.1| PREDICTED: poly(A) binding protein, cytoplasmic 5 [Oryctolagus
cuniculus]
Length = 382
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 35/44 (79%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 334 MMEVGHGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 41.2 bits (95), Expect = 0.65, Method: Compositional matrix adjust.
Identities = 25/101 (24%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+S+D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VSDDHGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ G F YGPT+ ++
Sbjct: 198 FTNVFVKNFGDDMDDEKLKELFSE--------YGPTESVKV 230
>gi|291401234|ref|XP_002716993.1| PREDICTED: poly(A) binding protein, cytoplasmic 4-like [Oryctolagus
cuniculus]
Length = 370
Score = 70.1 bits (170), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 38/44 (86%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E+G+SKGFG +CFSS E+A +A+T MNGRI+GSKPL +ALAQ
Sbjct: 325 MQEEGQSKGFGLICFSSSEDAARAMTVMNGRILGSKPLNIALAQ 368
Score = 60.8 bits (146), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 45/150 (30%), Positives = 74/150 (49%), Gaps = 14/150 (9%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RIAN 63
G+S+GFGFV F S E A KAV EMNG+ + +P++V AQ+K +R+A L + Q +
Sbjct: 227 GKSRGFGFVSFDSHEAARKAVEEMNGKEVNGQPIFVGRAQKKVERQAELKQMFEQLKKER 286
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGF 123
+R Q +L+ L + +G ++ M+ GQ+ +GF
Sbjct: 287 IRGCQGAKLYIKNLDENIDDEKLRKEFSSFGSISRVKV-----------MQEEGQS-KGF 334
Query: 124 PNIPQFRSAPRASTGQTVIRGANMSARPIT 153
I F S+ A+ TV+ G + ++P+
Sbjct: 335 GLIC-FSSSEDAARAMTVMNGRILGSKPLN 363
Score = 46.2 bits (108), Expect = 0.018, Method: Compositional matrix adjust.
Identities = 23/71 (32%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F S A +A+ EMNG+ + ++V + ++DR+A L ++
Sbjct: 130 MSDDRGSKGYAFVHFQSQSAADRAIEEMNGKFLKDCKVFVGRFKSRKDREAELRNK-ASE 188
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 189 FTNVYIKNFGD 199
>gi|6102944|emb|CAB59276.1| hypothetical protein [Homo sapiens]
Length = 367
Score = 69.7 bits (169), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 319 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 362
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 221 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 267
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 123 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 182
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 183 FTNVFVKNIGDDIDDEKLKELFCE--------YGPTESVKV 215
>gi|194386842|dbj|BAG59787.1| unnamed protein product [Homo sapiens]
Length = 350
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 302 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 345
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 204 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 250
Score = 41.6 bits (96), Expect = 0.47, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 106 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 165
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 166 FTNVFVKNIGDDIDDEKLKELFCE--------YGPTESVKV 198
>gi|22329932|ref|NP_174676.2| poly(A) binding protein 1 [Arabidopsis thaliana]
gi|332193555|gb|AEE31676.1| poly(A) binding protein 1 [Arabidopsis thaliana]
Length = 407
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G SKG GFV FS+ EEA+KA+ +MNG+++G+KP+YV+LAQ KE K HL +Q+
Sbjct: 259 NGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQF 312
Score = 49.7 bits (117), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 22/54 (40%), Positives = 34/54 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+S+ FGFV F E A A+ +MNG ++ K L+V AQRK +R L +++
Sbjct: 155 EGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKF 208
>gi|18201888|ref|NP_543022.1| polyadenylate-binding protein 5 [Homo sapiens]
gi|115392093|ref|NP_001065269.1| polyadenylate-binding protein 5 [Pan troglodytes]
gi|332239776|ref|XP_003269075.1| PREDICTED: polyadenylate-binding protein 5 [Nomascus leucogenys]
gi|426396593|ref|XP_004064521.1| PREDICTED: polyadenylate-binding protein 5-like [Gorilla gorilla
gorilla]
gi|28201851|sp|Q96DU9.1|PABP5_HUMAN RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502886|sp|P60047.1|PABP5_GORGO RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502887|sp|P60048.1|PABP5_HYLLA RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502888|sp|P60049.1|PABP5_PANTR RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|38502889|sp|P60050.1|PABP5_PONPY RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571705|emb|CAC42817.1| Poly(A)-binding protein cytoplasmic 5 [Gorilla gorilla]
gi|14571711|emb|CAC42818.1| Poly(A)-binding protein cytoplasmic 5 [Hylobates lar]
gi|14571756|emb|CAC42822.1| Poly(A)-binding protein cytoplasmic 5 [Pongo pygmaeus]
gi|14571764|emb|CAC42823.1| poly(A)-binding protein cytoplasmic 5 [Pan troglodytes]
gi|14572616|emb|CAC42826.1| Poly(A)-binding protein cytoplasmic 5 [Homo sapiens]
gi|38649270|gb|AAH63113.1| Poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|119623181|gb|EAX02776.1| poly(A) binding protein, cytoplasmic 5 [Homo sapiens]
gi|158261233|dbj|BAF82794.1| unnamed protein product [Homo sapiens]
gi|208968659|dbj|BAG74168.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|312151110|gb|ADQ32067.1| poly(A) binding protein, cytoplasmic 5 [synthetic construct]
gi|410208314|gb|JAA01376.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
gi|410305648|gb|JAA31424.1| poly(A) binding protein, cytoplasmic 5 [Pan troglodytes]
Length = 382
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCE--------YGPTESVKV 230
>gi|296235923|ref|XP_002763106.1| PREDICTED: polyadenylate-binding protein 5 [Callithrix jacchus]
gi|14571652|emb|CAC42812.1| Poly(A)-binding protein cytoplasmic 5 [Callithrix jacchus]
Length = 382
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 47.0 bits (110), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ + K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLA 282
Score = 42.4 bits (98), Expect = 0.27, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G+ F YGPT+ ++
Sbjct: 198 FTNVFVKNIGEDIDDEKLKELFCE--------YGPTESVKV 230
>gi|197097448|ref|NP_001126434.1| polyadenylate-binding protein 5 [Pongo abelii]
gi|55731438|emb|CAH92432.1| hypothetical protein [Pongo abelii]
Length = 382
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 42.0 bits (97), Expect = 0.39, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCE--------YGPTESVKV 230
>gi|380799249|gb|AFE71500.1| polyadenylate-binding protein 5, partial [Macaca mulatta]
Length = 256
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGR++GSKPL+V L Q
Sbjct: 208 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 251
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 110 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 156
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 12 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 71
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 72 FTNVFVKNIGDDIDDEKLKELFCE--------YGPTESVKV 104
>gi|403295651|ref|XP_003938748.1| PREDICTED: polyadenylate-binding protein 5 [Saimiri boliviensis
boliviensis]
Length = 382
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 334 MLEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 42.0 bits (97), Expect = 0.35, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCE--------YGPTESVKV 230
>gi|225442420|ref|XP_002277538.1| PREDICTED: polyadenylate-binding protein, cytoplasmic and
nuclear-like [Vitis vinifera]
Length = 630
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 38/47 (80%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+ G SKGFGFVCFS+ EEA KA+T +NG ++ + LY+A+AQRKEDR
Sbjct: 344 DSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDR 390
Score = 65.1 bits (157), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 28/61 (45%), Positives = 47/61 (77%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
K+++G L+PL+ + PELAGKITGMLLE++N++++ +L+ +SL +VE+AV L+ +
Sbjct: 550 KEIIGHHLYPLVHSLQPELAGKITGMLLEMNNSDIIKLLDSPDSLAVQVEQAVQALKEAK 609
Query: 295 A 295
A
Sbjct: 610 A 610
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G+S+GFGFV F SP+EA KAV +NG ++GSK L+V AQ+K +R+ L + N
Sbjct: 243 NGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCN 302
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGF 123
+ ++ L+ V + F Q+T +A MR ++GF
Sbjct: 303 IGKEKASNLYVKNLDAS--VDDDKLQEHFSSCGQIT---------SAKVMRHDSGLSKGF 351
Query: 124 PNIPQFRSAPRASTGQTVIRGANMSARPI 152
+ F ++ A T + G + R +
Sbjct: 352 GFVC-FSTSEEAQKALTTLNGTLLHGRSL 379
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+G+SK FGFV F S + AT A+ +N ++ K L+V+ +K +RK AS+ +
Sbjct: 151 ENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKE--ASEET-KFT 207
Query: 63 NMRMQQMGQ 71
N+ ++ +G+
Sbjct: 208 NVYVKNLGE 216
>gi|344238711|gb|EGV94814.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 63
Score = 69.7 bits (169), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 34/44 (77%), Positives = 37/44 (84%)
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAE 268
MLA+ PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEID +
Sbjct: 1 MLASDPPQEQKQMLGERLFPLIQAMHSTLAGKITGMLLEIDKTQ 44
>gi|70990636|ref|XP_750167.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|74669855|sp|Q4WK03.1|PABP_ASPFU RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|66847799|gb|EAL88129.1| polyadenylate-binding protein [Aspergillus fumigatus Af293]
gi|159130644|gb|EDP55757.1| polyadenylate-binding protein [Aspergillus fumigatus A1163]
Length = 753
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 56/73 (76%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT+ L+A P +QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE E+L+
Sbjct: 651 LTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNNELLGLLEDEEALR 710
Query: 281 SKVEEAVAVLQAH 293
+KV+EA++V +
Sbjct: 711 AKVDEALSVYDEY 723
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV FS+ + A AV EMN + I + LYV AQ+K +R+ L QY
Sbjct: 267 DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQY 322
Score = 45.4 bits (106), Expect = 0.033, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 174 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 233
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 234 NVYIKNI 240
>gi|147863122|emb|CAN82975.1| hypothetical protein VITISV_026120 [Vitis vinifera]
Length = 213
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 30/56 (53%), Positives = 44/56 (78%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G S+G GFV FS+ +EA++ + +MNG+++ SKPLYVALAQ KEDR+ L +Q+ Q
Sbjct: 109 NGISRGSGFVAFSTAKEASRVLADMNGKMVASKPLYVALAQWKEDRRTRLQAQFSQ 164
>gi|6019464|gb|AAC64372.2| polyadenylate-binding protein 1 [Leishmania major]
Length = 560
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 49/71 (69%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+SE G S+GFGFV FS+ +EA A+ EMNGR++ KPL V +AQR++ R + Q+ QR
Sbjct: 340 VSESGVSRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTIVRLQFQQR 399
Query: 61 IANMRMQQMGQ 71
+ M M+QM Q
Sbjct: 400 L-QMMMRQMHQ 409
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 47/75 (62%)
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
P+T L + PQEQ+ LG+RLF + + P++A KITGM LE+ E +L + L
Sbjct: 484 PITPQELESMSPQEQRAALGDRLFLKVYEIPPDVAPKITGMFLEMKPKEAYELLNDQKRL 543
Query: 280 KSKVEEAVAVLQAHQ 294
+ +V EA+ VL+AHQ
Sbjct: 544 EERVTEALCVLKAHQ 558
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRII----GSKPLYVALAQRKEDRKAHLASQY 57
E+G+S+G+GFV F A A+ +MNG K LYVA R+ R A L + +
Sbjct: 147 DEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAALVANF 206
>gi|70947056|ref|XP_743180.1| polyadenylate-binding protein [Plasmodium chabaudi chabaudi]
gi|56522555|emb|CAH74716.1| polyadenylate-binding protein, putative [Plasmodium chabaudi
chabaudi]
Length = 629
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M +D +SKGFGFVCF + EEA KAVTEM+ +II KPLYV LA+++E R + L ++
Sbjct: 432 MKDDKDQSKGFGFVCFGTHEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 489
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 26/96 (27%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH---LASQYM 58
E G+SK +GFV + E A +A+ ++NG +GSK +YV +K +R + + Y+
Sbjct: 138 DEFGKSKNYGFVHYEDEESAKEAIEKVNGMQLGSKNVYVGHFIKKSERATNDTKFTNLYV 197
Query: 59 QRIANMRMQ-QMGQLFQP-GSTGGYFVPTLPQPQRF 92
+ + + + +LF P G V + + ++F
Sbjct: 198 KNFPDTVTEAHLKELFSPYGEITSMIVKSDNKNRKF 233
>gi|401430030|ref|XP_003879497.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
gi|322495747|emb|CBZ31053.1| putative polyadenylate-binding protein 1 [Leishmania mexicana
MHOM/GT/2001/U1103]
Length = 564
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 35/71 (49%), Positives = 48/71 (67%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+SE G S+GFGFV FS+ +EA A+ EMNGR++ KPL V +AQR++ R L Q+ QR
Sbjct: 340 VSESGASRGFGFVSFSNADEANAALREMNGRMLNGKPLIVNIAQRRDQRYTMLRLQFQQR 399
Query: 61 IANMRMQQMGQ 71
+ M M+ M Q
Sbjct: 400 L-QMMMRTMHQ 409
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 34/75 (45%), Positives = 47/75 (62%)
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
P+T L + PQEQ+ LG+RLF + + PELA KITGM LE+ E +L + L
Sbjct: 488 PITPQELESMSPQEQRAALGDRLFLKVYEIAPELAPKITGMFLEMKPKEAYELLNDQKRL 547
Query: 280 KSKVEEAVAVLQAHQ 294
+ +V EA+ VL+AHQ
Sbjct: 548 EDRVTEALCVLKAHQ 562
Score = 40.0 bits (92), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 22/60 (36%), Positives = 31/60 (51%), Gaps = 4/60 (6%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRII----GSKPLYVALAQRKEDRKAHLASQY 57
E+G+S+G+GFV F A A+ +MNG K LYVA R+ R A L + +
Sbjct: 147 DEEGKSRGYGFVHFKDETSAKDAIVKMNGAADHASEDKKALYVANFIRRNARLAALVANF 206
>gi|428183055|gb|EKX51914.1| hypothetical protein GUITHDRAFT_84932 [Guillardia theta CCMP2712]
Length = 616
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/50 (64%), Positives = 41/50 (82%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
SKGFGFVCF+ PEEAT+AVT MNG+++G+KP+YVAL Q E R+ A+Q
Sbjct: 349 SKGFGFVCFAQPEEATRAVTAMNGQMVGTKPIYVALHQPIEIRRQMQAAQ 398
Score = 52.4 bits (124), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 27/74 (36%), Positives = 42/74 (56%), Gaps = 3/74 (4%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGR--IIGSKPLYVALAQRKEDRKAHLASQYMQ- 59
EDG SK FGFV F ++A K EMNG+ G + +Y A+++ +RK L +Y Q
Sbjct: 238 EDGTSKCFGFVNFKEADDAKKCCEEMNGQKPFGGERDIYAGRAEKESERKEKLKKKYDQI 297
Query: 60 RIANMRMQQMGQLF 73
R+ ++ Q+ L+
Sbjct: 298 RMERLKNNQLVNLY 311
Score = 44.3 bits (103), Expect = 0.063, Method: Compositional matrix adjust.
Identities = 18/40 (45%), Positives = 28/40 (70%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYV 40
M E S+GFGFV F + EEA +A++++NG ++ K L+V
Sbjct: 145 MDEHANSRGFGFVQFETAEEANEAISKVNGMLLEDKRLFV 184
>gi|380503877|ref|NP_001244114.1| polyadenylate-binding protein 5 [Equus caballus]
Length = 382
Score = 69.3 bits (168), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 334 MVEVGQGKGFGVVCFSSFEEATKAVDEMNGRIMGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 39.3 bits (90), Expect = 2.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 37/71 (52%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 198 FTNVFVKNFGD 208
>gi|444732647|gb|ELW72929.1| Polyadenylate-binding protein 5 [Tupaia chinensis]
Length = 382
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGR++GSKPL+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 46.2 bits (108), Expect = 0.016, Method: Compositional matrix adjust.
Identities = 23/47 (48%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ + K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSMDGKVLYVGRAQKKIERLA 282
Score = 41.6 bits (96), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
N+ ++ G F YGPT+ ++ +R +G +
Sbjct: 198 FTNVFVKNFGDDMDDEKLKELFSE--------YGPTESVKV-----------IRDAGGKS 238
Query: 121 QGF 123
+GF
Sbjct: 239 KGF 241
>gi|119496945|ref|XP_001265244.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
gi|158512647|sp|A1D4K4.1|PABP_NEOFI RecName: Full=Polyadenylate-binding protein, cytoplasmic and
nuclear; Short=PABP; Short=Poly(A)-binding protein;
AltName: Full=Polyadenylate tail-binding protein
gi|119413406|gb|EAW23347.1| polyadenylate-binding protein [Neosartorya fischeri NRRL 181]
Length = 751
Score = 68.9 bits (167), Expect = 2e-09, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 55/73 (75%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT+ L A P +QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE E+L+
Sbjct: 649 LTAQTLNAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDEEALR 708
Query: 281 SKVEEAVAVLQAH 293
+KV+EA++V +
Sbjct: 709 AKVDEALSVYDEY 721
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV FS+ + A AV EMN + I + LYV AQ+K +R+ L QY
Sbjct: 267 DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQY 322
Score = 45.4 bits (106), Expect = 0.031, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 174 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 233
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 234 NVYIKNI 240
>gi|113461967|ref|NP_001038193.1| polyadenylate-binding protein 5 [Macaca mulatta]
gi|402910717|ref|XP_003918003.1| PREDICTED: polyadenylate-binding protein 5 [Papio anubis]
gi|50400917|sp|Q7JGR2.1|PABP5_MACMU RecName: Full=Polyadenylate-binding protein 5; Short=PABP-5;
Short=Poly(A)-binding protein 5
gi|14571725|emb|CAC42819.1| Poly(A)-binding protein cytoplasmic 5 [Macaca mulatta]
gi|14571737|emb|CAC42821.1| Poly(A)-binding protein cytoplasmic 5 [Miopithecus talapoin]
gi|90082100|dbj|BAE90331.1| unnamed protein product [Macaca fascicularis]
gi|355704969|gb|EHH30894.1| Polyadenylate-binding protein 5 [Macaca mulatta]
gi|355757521|gb|EHH61046.1| Polyadenylate-binding protein 5 [Macaca fascicularis]
Length = 382
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGR++GSKPL+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRVVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCE--------YGPTESVKV 230
>gi|297743165|emb|CBI36032.3| unnamed protein product [Vitis vinifera]
Length = 476
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/47 (61%), Positives = 38/47 (80%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+ G SKGFGFVCFS+ EEA KA+T +NG ++ + LY+A+AQRKEDR
Sbjct: 344 DSGLSKGFGFVCFSTSEEAQKALTTLNGTLLHGRSLYIAMAQRKEDR 390
Score = 62.0 bits (149), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 43/149 (28%), Positives = 70/149 (46%), Gaps = 12/149 (8%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G+S+GFGFV F SP+EA KAV +NG ++GSK L+V AQ+K +R+ L + N
Sbjct: 243 NGKSRGFGFVNFESPDEAKKAVEALNGAMLGSKKLFVGRAQKKAERQELLKHEKEMVNCN 302
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGF 123
+ ++ L+ V + F Q+T +A MR ++GF
Sbjct: 303 IGKEKASNLYVKNLDAS--VDDDKLQEHFSSCGQIT---------SAKVMRHDSGLSKGF 351
Query: 124 PNIPQFRSAPRASTGQTVIRGANMSARPI 152
+ F ++ A T + G + R +
Sbjct: 352 GFVC-FSTSEEAQKALTTLNGTLLHGRSL 379
Score = 45.1 bits (105), Expect = 0.043, Method: Compositional matrix adjust.
Identities = 24/69 (34%), Positives = 42/69 (60%), Gaps = 3/69 (4%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+G+SK FGFV F S + AT A+ +N ++ K L+V+ +K +RK AS+ +
Sbjct: 151 ENGKSKCFGFVQFDSDDSATAALNALNDTMLDGKKLFVSKFVKKCERKE--ASEE-TKFT 207
Query: 63 NMRMQQMGQ 71
N+ ++ +G+
Sbjct: 208 NVYVKNLGE 216
>gi|317025248|ref|XP_001388739.2| polyadenylate-binding protein, cytoplasmic and nuclear [Aspergillus
niger CBS 513.88]
gi|350637942|gb|EHA26298.1| hypothetical protein ASPNIDRAFT_46760 [Aspergillus niger ATCC 1015]
Length = 764
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 55/73 (75%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
+ + L AA P +QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE E+L+
Sbjct: 661 VNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDEEALR 720
Query: 281 SKVEEAVAVLQAH 293
+KV+EA++V +
Sbjct: 721 AKVDEALSVYDEY 733
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV FS+ E A AV EMN + I S+ LYV AQ+K +R+ L QY
Sbjct: 269 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQY 324
Score = 44.3 bits (103), Expect = 0.070, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 176 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 235
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 236 NVYIKNL 242
>gi|159164292|pdb|2DYD|A Chain A, Solution Structure Of The Pabc Domain From Triticum
Aevestium Poly(A)-Binding Protein
Length = 85
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 33/72 (45%), Positives = 54/72 (75%)
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++ LA + P+ Q+ MLGE L+PL+ ++ + A K+TGMLLE+D E+L++LE ++LK+K
Sbjct: 11 ASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAK 70
Query: 283 VEEAVAVLQAHQ 294
V EA+ VL++ Q
Sbjct: 71 VAEAMEVLRSAQ 82
>gi|358372137|dbj|GAA88742.1| polyadenylate-binding protein [Aspergillus kawachii IFO 4308]
Length = 763
Score = 68.9 bits (167), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 55/73 (75%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
+ + L AA P +QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE E+L+
Sbjct: 660 VNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDEEALR 719
Query: 281 SKVEEAVAVLQAH 293
+KV+EA++V +
Sbjct: 720 AKVDEALSVYDEY 732
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV FS+ E A AV EMN + I S+ LYV AQ+K +R+ L QY
Sbjct: 267 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQY 322
Score = 44.3 bits (103), Expect = 0.074, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 174 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 233
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 234 NVYIKNL 240
>gi|355687608|gb|EHH26192.1| hypothetical protein EGK_16094 [Macaca mulatta]
gi|355749570|gb|EHH53969.1| hypothetical protein EGM_14691 [Macaca fascicularis]
Length = 370
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 29/44 (65%), Positives = 38/44 (86%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M ++G+SKGFGF+CFSS E+ATKA+ EMNG +GSKP+ +ALAQ
Sbjct: 325 MQQEGQSKGFGFICFSSLEDATKAMIEMNGCFLGSKPISIALAQ 368
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++V AQ+K +R+A L + Q
Sbjct: 227 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 281
Score = 48.9 bits (115), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 24/70 (34%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F + A +A+ EMNG+++ S ++V + ++DR+A L S+
Sbjct: 130 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKSCKVFVGRFKNRKDREAELRSK-ASE 188
Query: 61 IANMRMQQMG 70
N+ ++ G
Sbjct: 189 FTNIYIKNFG 198
>gi|47026849|gb|AAT08650.1| poly(A)-binding protein [Hyacinthus orientalis]
Length = 126
Score = 68.6 bits (166), Expect = 3e-09, Method: Compositional matrix adjust.
Identities = 32/60 (53%), Positives = 45/60 (75%)
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P+ Q+ MLGE L+PL+ ++ E A K+TGMLLE+D E+L++LE ESL+ KV EA+ VL
Sbjct: 41 PEHQRMMLGENLYPLVAQLETEHAAKVTGMLLEMDQTEVLHLLESPESLRGKVAEAMEVL 100
>gi|159162751|pdb|1NMR|A Chain A, Solution Structure Of C-Terminal Domain From Trypanosoma
Cruzi Poly(A)-Binding Protein
Length = 85
Score = 68.6 bits (166), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 38/78 (48%), Positives = 52/78 (66%), Gaps = 2/78 (2%)
Query: 216 QGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEH 275
QGQ ST+LA P++QK +LGERL+ I + P A K+TGMLLE+DN E+L +L+
Sbjct: 7 QGQN--LSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDT 64
Query: 276 NESLKSKVEEAVAVLQAH 293
L +KV+EA+ VL H
Sbjct: 65 PGLLDAKVQEALEVLNRH 82
>gi|384495100|gb|EIE85591.1| hypothetical protein RO3G_10301 [Rhizopus delemar RA 99-880]
Length = 359
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 30/40 (75%), Positives = 33/40 (82%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
G KGFGFVCFSS +EA +AV EMNGR I SKP+YVALAQ
Sbjct: 318 GAPKGFGFVCFSSSDEANRAVAEMNGRFISSKPIYVALAQ 357
>gi|397478151|ref|XP_003810419.1| PREDICTED: polyadenylate-binding protein 5-like [Pan paniscus]
Length = 382
Score = 68.2 bits (165), Expect = 4e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEA+KAV EMNGRI+GSKPL+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEASKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 42.0 bits (97), Expect = 0.38, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCE--------YGPTESVKV 230
>gi|356572504|ref|XP_003554408.1| PREDICTED: probable polyadenylate-binding protein At2g36660-like
[Glycine max]
Length = 636
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 41/76 (53%), Positives = 57/76 (75%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
+ ++LA A P++QK++LGE L+ L+ ++ P LA KITGMLLE+DN ELL +LE ESL
Sbjct: 542 MLHSLLAGAAPEQQKEILGEHLYMLVHKLKPTLAAKITGMLLEMDNGELLLLLESPESLS 601
Query: 281 SKVEEAVAVLQAHQAK 296
+KVEEAV VL+ + K
Sbjct: 602 AKVEEAVQVLKNSKTK 617
Score = 59.7 bits (143), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 28/59 (47%), Positives = 41/59 (69%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+G SKGFGFV + +P++A KA+ MNG +GSK LYVA AQ+K +R+ L Q+ ++
Sbjct: 225 DNNGMSKGFGFVNYDNPDDAKKAMEAMNGSQLGSKILYVARAQKKAEREQILHHQFEEK 283
Score = 53.1 bits (126), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 37/65 (56%), Gaps = 5/65 (7%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLASQ 56
SEDG+SKG+GFV F S E + A+ ++NG + K LYV +K DR A +
Sbjct: 134 SEDGKSKGYGFVQFESEESSKVAIEKLNGYTVADKELYVGKFVKKSDRILPGPDARYTNL 193
Query: 57 YMQRI 61
YM+ +
Sbjct: 194 YMKNL 198
>gi|221061487|ref|XP_002262313.1| polyadenylate-binding protein [Plasmodium knowlesi strain H]
gi|193811463|emb|CAQ42191.1| polyadenylate-binding protein, putative [Plasmodium knowlesi strain
H]
Length = 874
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/52 (57%), Positives = 40/52 (76%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+SKGFGFVCF+ EEA KAVTEM+ +II KPLYV LA+++E R + L ++
Sbjct: 478 QSKGFGFVCFAQQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 529
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 48/58 (82%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QKQ+LGE LFPL+ +P LAGKITGM+LE+DN+ELL +LE+ E LK K++EA+ VLQ
Sbjct: 814 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 871
Score = 43.9 bits (102), Expect = 0.083, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH---LASQYM 58
E G+SK +GFV + E A +A+ ++NG +GSK +YV ++ +R + + Y+
Sbjct: 138 DEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKRSERATNDTKFTNLYV 197
Query: 59 QRIANMRMQ-QMGQLFQP-GSTGGYFVPTLPQPQRF 92
+ + + + QLF P G V T + ++F
Sbjct: 198 KNFPDSVTEAHLKQLFSPYGEITSMIVKTDNKNRKF 233
>gi|348570452|ref|XP_003471011.1| PREDICTED: polyadenylate-binding protein 5-like [Cavia porcellus]
Length = 382
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG +CFSS EEATKAV EMNGR++GSKPL+V L Q
Sbjct: 334 MMEVGQGKGFGVICFSSFEEATKAVEEMNGRLVGSKPLHVTLGQ 377
Score = 46.6 bits (109), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 22/47 (46%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + + A KAV +++G+ + K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHDAAQKAVLDLHGKSVDGKVLYVGRAQKKIERLA 282
Score = 39.7 bits (91), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVQLNNRQVYVGRFKFPEERAAEVRTRDKAT 197
Query: 61 IANMRMQQMGQ 71
N+ ++ +G
Sbjct: 198 FTNVFVKNLGD 208
>gi|255549774|ref|XP_002515938.1| polyadenylate-binding protein, putative [Ricinus communis]
gi|223544843|gb|EEF46358.1| polyadenylate-binding protein, putative [Ricinus communis]
Length = 608
Score = 68.2 bits (165), Expect = 5e-09, Method: Compositional matrix adjust.
Identities = 30/55 (54%), Positives = 40/55 (72%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G S+GFGFVCFSSPEEA KA+ +NG + K LYVA+AQ K DR+ L + +
Sbjct: 337 DNGASRGFGFVCFSSPEEAKKALNALNGAVFQGKSLYVAMAQCKRDRQLALQTYF 391
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/68 (44%), Positives = 43/68 (63%), Gaps = 1/68 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+S+GFGFV F SPE+A KAV +NG + S+ L+V AQ K +RK L +Y + I
Sbjct: 233 DHNGKSRGFGFVDFESPEDAKKAVDALNGYQLESRTLFVGRAQAKAERKKILQHEY-KDI 291
Query: 62 ANMRMQQM 69
N M++
Sbjct: 292 FNTHMEKF 299
Score = 41.6 bits (96), Expect = 0.45, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 41/72 (56%), Gaps = 3/72 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ- 59
+ E G+SKG+GFV F S + A A T ++ ++ K LYV+ +K +R A+ Y +
Sbjct: 139 VEEHGKSKGYGFVQFDSEDSALAARTALHDTMLKEKKLYVSRFVKKSERTT--ATSYDEL 196
Query: 60 RIANMRMQQMGQ 71
+ N+ ++ + +
Sbjct: 197 KFTNLYVKNLSK 208
>gi|431922856|gb|ELK19640.1| Polyadenylate-binding protein 5 [Pteropus alecto]
Length = 373
Score = 67.8 bits (164), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VC+SS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 325 MVEVGQGKGFGVVCYSSFEEATKAVDEMNGRIMGSKPLHVTLGQ 368
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 227 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 273
>gi|301787589|ref|XP_002929210.1| PREDICTED: polyadenylate-binding protein 5-like [Ailuropoda
melanoleuca]
Length = 382
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGR +GSKPL+V L Q
Sbjct: 334 MVEVGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
Score = 40.0 bits (92), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ G L + YGPT+ ++
Sbjct: 198 FTNVFVKNFGDDMDD--------EKLKEIFSGYGPTESVKV 230
>gi|300796236|ref|NP_001179218.1| polyadenylate-binding protein 5 [Bos taurus]
gi|296471041|tpg|DAA13156.1| TPA: poly(A) binding protein, cytoplasmic 5 [Bos taurus]
gi|440903676|gb|ELR54310.1| Polyadenylate-binding protein 5 [Bos grunniens mutus]
Length = 382
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG +CFSS EEATKAV EMNGRI+GSKPL V L Q
Sbjct: 334 MVEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 41.2 bits (95), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 19/123 (15%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDKAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
N+ ++ G F YGPT+ ++ +R S +
Sbjct: 198 FTNVFVKNFGDDMDDDKLKELFSE--------YGPTESVKV-----------IRDSSGKS 238
Query: 121 QGF 123
+GF
Sbjct: 239 KGF 241
>gi|432118841|gb|ELK38215.1| Polyadenylate-binding protein 5 [Myotis davidii]
Length = 382
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGR++GSKPL+V L Q
Sbjct: 334 MVEVGQGKGFGVVCFSSFEEATKAVGEMNGRMVGSKPLHVTLGQ 377
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A L ++
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKALYVGRAQKKIERLAELRRRF 288
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ G F YGPT+ ++
Sbjct: 198 FTNVFVKNFGDEVDDEKLKEIFSE--------YGPTESVKV 230
>gi|281345691|gb|EFB21275.1| hypothetical protein PANDA_019324 [Ailuropoda melanoleuca]
Length = 381
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 35/44 (79%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGR +GSKPL+V L Q
Sbjct: 334 MVEVGQGKGFGVVCFSSFEEATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ G L + YGPT+ ++
Sbjct: 198 FTNVFVKNFGDDMDD--------EKLKEIFSGYGPTESVKV 230
>gi|389586343|dbj|GAB69072.1| polyadenylate-binding protein, partial [Plasmodium cynomolgi strain
B]
Length = 883
Score = 67.4 bits (163), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 32/58 (55%), Positives = 43/58 (74%), Gaps = 1/58 (1%)
Query: 1 MSEDG-RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M +D +SKGFGFVCF+ EEA KAVTEM+ +II KPLYV LA+++E R + L ++
Sbjct: 481 MRDDKEQSKGFGFVCFALQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 538
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 48/58 (82%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QKQ+LGE LFPL+ +P LAGKITGM+LE+DN+ELL +LE+ E LK K++EA+ VLQ
Sbjct: 824 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 881
Score = 43.9 bits (102), Expect = 0.097, Method: Compositional matrix adjust.
Identities = 27/96 (28%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH---LASQYM 58
E G+SK +GFV + E A +A+ ++NG +GSK +YV +K +R + + Y+
Sbjct: 138 DEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERATNDTKFTNLYV 197
Query: 59 QRIANMRMQ-QMGQLFQP-GSTGGYFVPTLPQPQRF 92
+ + + + +LF P G V T + ++F
Sbjct: 198 KNFPDSVTETHLKELFSPYGEITSMIVKTDNKNRKF 233
>gi|323453123|gb|EGB08995.1| hypothetical protein AURANDRAFT_17531, partial [Aureococcus
anophagefferens]
Length = 67
Score = 67.0 bits (162), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 34/61 (55%), Positives = 43/61 (70%)
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
E K LG RL+PLI+ PELAGK+TGM LE+ A+L+ +LE L +KV EAVA L+A
Sbjct: 7 EDKNALGARLYPLIELSQPELAGKLTGMFLEMSEADLVRLLESPALLDAKVAEAVATLEA 66
Query: 293 H 293
H
Sbjct: 67 H 67
>gi|410988961|ref|XP_004000741.1| PREDICTED: polyadenylate-binding protein 5 [Felis catus]
Length = 382
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS E+ATKAV EMNGR +GSKPL+V L Q
Sbjct: 334 MVEVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 48.1 bits (113), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
Score = 40.4 bits (93), Expect = 0.96, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTKDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ G L + YGPT+ ++
Sbjct: 198 FTNVFVKNFGDDMDD--------EKLKEIFSGYGPTESVKV 230
>gi|74008013|ref|XP_549122.2| PREDICTED: polyadenylate-binding protein 5 [Canis lupus familiaris]
Length = 382
Score = 66.6 bits (161), Expect = 1e-08, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS E+ATKAV EMNGR +GSKPL+V L Q
Sbjct: 334 MVEVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLA 282
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ G L + YGPT+ ++
Sbjct: 198 FTNVFVKNFGNDMDD--------EKLKEIFSGYGPTESVKV 230
>gi|156103277|ref|XP_001617331.1| polyadenylate-binding protein [Plasmodium vivax Sal-1]
gi|148806205|gb|EDL47604.1| polyadenylate-binding protein, putative [Plasmodium vivax]
Length = 883
Score = 66.2 bits (160), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 29/52 (55%), Positives = 40/52 (76%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+SKGFGFVCF+ EEA +AVTEM+ +II KPLYV LA+++E R + L ++
Sbjct: 487 QSKGFGFVCFALQEEANRAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF 538
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 37/58 (63%), Positives = 48/58 (82%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
QKQ+LGE LFPL+ +P LAGKITGM+LE+DN+ELL +LE+ E LK K++EA+ VLQ
Sbjct: 823 QKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLKKKIDEALVVLQ 880
Score = 45.1 bits (105), Expect = 0.038, Method: Compositional matrix adjust.
Identities = 28/96 (29%), Positives = 49/96 (51%), Gaps = 5/96 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH---LASQYM 58
E G+SK +GFV + E A +A+ ++NG +GSK +YV +K +R + + Y+
Sbjct: 138 DEFGKSKSYGFVHYEDEESAKEAIEKVNGIQLGSKNVYVGHFIKKSERATNDTKFTNLYV 197
Query: 59 QRIANMRMQ-QMGQLFQP-GSTGGYFVPTLPQPQRF 92
+ + + + QLF P G V T + ++F
Sbjct: 198 KNFPDSVTEAHLKQLFSPFGEITSMIVKTDNKNRKF 233
>gi|29336045|ref|NP_444344.1| polyadenylate-binding protein 5 [Mus musculus]
gi|26341316|dbj|BAC34320.1| unnamed protein product [Mus musculus]
gi|76827669|gb|AAI07363.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|76828194|gb|AAI07364.1| Poly(A) binding protein, cytoplasmic 5 [Mus musculus]
gi|148701502|gb|EDL33449.1| poly A binding protein, cytoplasmic 5 [Mus musculus]
Length = 381
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 34/44 (77%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEA KAV EMNGRIIGSK L+V L Q
Sbjct: 333 MMEVGQGKGFGVVCFSSFEEACKAVDEMNGRIIGSKTLHVTLGQ 376
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G+SKGFGFV + + E A KAV E++G+ I K L V AQ+K +R A L ++
Sbjct: 235 GKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRF 287
Score = 41.2 bits (95), Expect = 0.54, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 137 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRERAT 196
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ G F YGPT+ ++
Sbjct: 197 FTNVFVKNFGDDIDDEKLNKLFSE--------YGPTESVKV 229
>gi|351705901|gb|EHB08820.1| Polyadenylate-binding protein 5 [Heterocephalus glaber]
Length = 382
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 35/44 (79%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGR++GSK L+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRLVGSKALHVTLGQ 377
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV E++G+ + K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVKYETHEAAQKAVLELHGKSMDGKVLYVGRAQKKIERLA 282
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 38/71 (53%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQ 71
N+ ++ +G
Sbjct: 198 FTNVFVKNLGD 208
>gi|224059164|ref|XP_002299747.1| predicted protein [Populus trichocarpa]
gi|222847005|gb|EEE84552.1| predicted protein [Populus trichocarpa]
Length = 367
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 39/57 (68%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M +G+SK FGFV F SP++A KAV MNG +IGSK L+V AQRK +R L +Y
Sbjct: 228 MDHEGKSKHFGFVNFKSPDDAKKAVDVMNGSVIGSKTLFVGKAQRKSERTMILKQEY 284
Score = 47.4 bits (111), Expect = 0.009, Method: Compositional matrix adjust.
Identities = 21/40 (52%), Positives = 27/40 (67%), Gaps = 5/40 (12%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVAL 42
DG SK FGFVCF+SPEEA KA+ +NG PL+ ++
Sbjct: 333 NDGTSKQFGFVCFASPEEANKALVALNGH-----PLFFSV 367
Score = 43.5 bits (101), Expect = 0.13, Method: Compositional matrix adjust.
Identities = 22/49 (44%), Positives = 31/49 (63%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
E+GRSKGFGFV F S + A A T ++ ++G K L+V +K +R A
Sbjct: 139 ENGRSKGFGFVQFESQDSALVAQTALHDTMLGGKKLHVCKFVKKTERTA 187
>gi|15228191|ref|NP_188259.1| poly(A) binding protein 6 [Arabidopsis thaliana]
gi|2062166|gb|AAB63640.1| poly(A)-binding protein isolog [Arabidopsis thaliana]
gi|9279720|dbj|BAB01277.1| poly(A) binding protein-like [Arabidopsis thaliana]
gi|332642284|gb|AEE75805.1| poly(A) binding protein 6 [Arabidopsis thaliana]
Length = 537
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/57 (54%), Positives = 41/57 (71%), Gaps = 1/57 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+GRSKGFGFVCFS+ EE+ +A +NG ++ KP+ V +A+RKEDR L QY Q
Sbjct: 339 ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRL-QQYFQ 394
Score = 53.9 bits (128), Expect = 8e-05, Method: Compositional matrix adjust.
Identities = 27/68 (39%), Positives = 40/68 (58%), Gaps = 3/68 (4%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA-- 62
GRS+GFGFV F +PE A KA+ + G +GSK L+V A +K++R+ L ++
Sbjct: 239 GRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAK 298
Query: 63 -NMRMQQM 69
NMR +
Sbjct: 299 PNMRWSNL 306
Score = 42.4 bits (98), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
+ E+G+SKGFGFV F + + A A + ++G ++ K L+VA K++R A +Q
Sbjct: 144 VEENGQSKGFGFVQFDTEQSAVSARSALHGSMVYGKKLFVAKFINKDERAAMAGNQ 199
>gi|167527097|ref|XP_001747881.1| hypothetical protein [Monosiga brevicollis MX1]
gi|163773630|gb|EDQ87268.1| predicted protein [Monosiga brevicollis MX1]
Length = 553
Score = 65.9 bits (159), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 34/66 (51%), Positives = 44/66 (66%), Gaps = 1/66 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQYMQRIA 62
DG+S+ FGFV FSS EEAT+A+ EMNGR+ KPLYV+ + KE+R + Q M
Sbjct: 350 DGQSRQFGFVLFSSEEEATRAIQEMNGRMTADGKPLYVSRFRNKEERAQEVQRQRMMTAQ 409
Query: 63 NMRMQQ 68
NM+ QQ
Sbjct: 410 NMQYQQ 415
Score = 40.0 bits (92), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 35/54 (64%)
Query: 237 MLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
+LG LF L+Q P+ A KITGMLL+ + +L LE+ +LK+ +++A VL
Sbjct: 490 VLGNPLFSLVQAQQPKHAPKITGMLLDQPDEAVLEYLENPAALKAALDQAYKVL 543
Score = 39.7 bits (91), Expect = 1.7, Method: Compositional matrix adjust.
Identities = 19/42 (45%), Positives = 28/42 (66%), Gaps = 2/42 (4%)
Query: 10 FGFVCFSSPEEATKAVTEMNGRIIGSK--PLYVALAQRKEDR 49
+GFV + +A KAV+E+N + +G+ LYVA AQRK +R
Sbjct: 251 YGFVAYKDTADAQKAVSELNDKPLGADGTKLYVARAQRKSER 292
>gi|395856984|ref|XP_003800896.1| PREDICTED: polyadenylate-binding protein 5 [Otolemur garnettii]
Length = 382
Score = 65.5 bits (158), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 31/44 (70%), Positives = 34/44 (77%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEA KAV EMNGR +GSKPL+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEAAKAVDEMNGRTVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKILYVGRAQKKIERLA 282
Score = 41.2 bits (95), Expect = 0.60, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 198 FTNVFVKNLGDDMDDEKLKELFSE--------YGPTESVKV 230
>gi|160333518|ref|NP_001103836.1| poly A binding protein, cytoplasmic 5 [Rattus norvegicus]
gi|149055477|gb|EDM07061.1| rCG38154 [Rattus norvegicus]
Length = 382
Score = 65.1 bits (157), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 35/44 (79%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEA+KAV EMNGR++GSK L+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQ 377
Score = 47.8 bits (112), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G+SKGFGFV + + E A KAV E++G+ I K L V AQ+K +R A L ++
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRF 288
Score = 40.8 bits (94), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ G F YGPT+ ++
Sbjct: 198 FTNVFVKNFGDDIDDEKLKKLFSE--------YGPTESVKV 230
>gi|426257905|ref|XP_004022562.1| PREDICTED: polyadenylate-binding protein 5-like [Ovis aries]
Length = 382
Score = 64.7 bits (156), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 32/44 (72%), Positives = 34/44 (77%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E + KGFG VCFSS EEATKAV EMNGRI+GSKPL V L Q
Sbjct: 334 MVEVEQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLQVTLGQ 377
Score = 47.8 bits (112), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 41.2 bits (95), Expect = 0.62, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 45/101 (44%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ G F YGPT+ ++
Sbjct: 198 FTNVFVKNFGDDMDDDKLKELFSE--------YGPTESVKV 230
>gi|405968487|gb|EKC33554.1| E3 ubiquitin-protein ligase UBR5 [Crassostrea gigas]
Length = 1240
Score = 64.3 bits (155), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 29/59 (49%), Positives = 44/59 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
++ LGERL+P ++ + P LA KITGMLLE+ A+LL ML E+L+ +V+EAV ++ +H
Sbjct: 842 RRQLGERLYPKVRALQPSLAPKITGMLLELSPAQLLLMLTSEETLRQRVDEAVDIIMSH 900
>gi|443926085|gb|ELU44826.1| PABP domain-containing protein [Rhizoctonia solani AG-1 IA]
Length = 69
Score = 63.9 bits (154), Expect = 9e-08, Method: Compositional matrix adjust.
Identities = 33/59 (55%), Positives = 46/59 (77%)
Query: 233 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
EQKQMLGE ++ I + PELAGKITGMLLE+DNAELL+++ +++ K++EA VL+
Sbjct: 2 EQKQMLGEMIYLQIYQSEPELAGKITGMLLEMDNAELLHLIGTPNAMQEKLDEAKTVLK 60
>gi|340721355|ref|XP_003399087.1| PREDICTED: e3 ubiquitin-protein ligase hyd-like [Bombus terrestris]
Length = 2826
Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LG+RL+P + + P LA KITGMLLE+ A+LL +L ++L+ KVEEA ++++H
Sbjct: 2431 HQQQLGDRLYPKVYALQPALAAKITGMLLELSPAQLLMLLASEDALRQKVEEAFELIRSH 2490
Query: 294 QAKQA 298
+ A
Sbjct: 2491 SQESA 2495
>gi|350406689|ref|XP_003487850.1| PREDICTED: E3 ubiquitin-protein ligase hyd-like [Bombus impatiens]
Length = 2826
Score = 63.5 bits (153), Expect = 1e-07, Method: Composition-based stats.
Identities = 29/65 (44%), Positives = 45/65 (69%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LG+RL+P + + P LA KITGMLLE+ A+LL +L ++L+ KVEEA ++++H
Sbjct: 2431 HQQQLGDRLYPKVYALQPALAAKITGMLLELSPAQLLMLLASEDALRQKVEEAFELIRSH 2490
Query: 294 QAKQA 298
+ A
Sbjct: 2491 SQESA 2495
>gi|71659594|ref|XP_821518.1| polyadenylate-binding protein 1 [Trypanosoma cruzi strain CL
Brener]
gi|70886900|gb|EAN99667.1| polyadenylate-binding protein 1, putative [Trypanosoma cruzi]
Length = 570
Score = 62.8 bits (151), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G S+GFGFV F + ++A A+ EMNGR++ KPL V +AQR++ R L Q+ QR+
Sbjct: 348 NGNSRGFGFVSFENADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQRLQA 407
Query: 64 M--RMQQM 69
M RM M
Sbjct: 408 MMRRMHSM 415
Score = 58.9 bits (141), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 47/76 (61%)
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
P+T+ L + EQ+ LG+RL+ + + P+ A KITGM LE+D E +L + L
Sbjct: 493 PITAEDLRSMSVDEQRAALGDRLYIKVFEIAPDHAPKITGMFLEMDLKEAFTLLTNQRLL 552
Query: 280 KSKVEEAVAVLQAHQA 295
+ KV EA+ VL+AH++
Sbjct: 553 QEKVIEALCVLKAHES 568
>gi|345498132|ref|XP_001605335.2| PREDICTED: E3 ubiquitin-protein ligase hyd-like isoform 1 [Nasonia
vitripennis]
Length = 2922
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LG+RL+P + + P A KITGMLLE++ A+LL +L ESL+ KVEEA ++Q+H
Sbjct: 2526 HQQQLGDRLYPKVYALRPTHAEKITGMLLEMNPAQLLMLLASEESLRQKVEEAFELIQSH 2585
Query: 294 QAKQAA 299
A+
Sbjct: 2586 NQDLAS 2591
>gi|345498130|ref|XP_003428158.1| PREDICTED: E3 ubiquitin-protein ligase hyd-like isoform 2 [Nasonia
vitripennis]
Length = 2928
Score = 62.8 bits (151), Expect = 2e-07, Method: Composition-based stats.
Identities = 31/66 (46%), Positives = 45/66 (68%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LG+RL+P + + P A KITGMLLE++ A+LL +L ESL+ KVEEA ++Q+H
Sbjct: 2532 HQQQLGDRLYPKVYALRPTHAEKITGMLLEMNPAQLLMLLASEESLRQKVEEAFELIQSH 2591
Query: 294 QAKQAA 299
A+
Sbjct: 2592 NQDLAS 2597
>gi|407408437|gb|EKF31876.1| poly(A)-binding protein, putative,polyadenylate-binding protein,
putative [Trypanosoma cruzi marinkellei]
Length = 569
Score = 62.4 bits (150), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/68 (45%), Positives = 44/68 (64%), Gaps = 2/68 (2%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G S+GFGFV F + ++A A+ EMNGR++ KPL V +AQR++ R L Q+ QR+
Sbjct: 341 NGNSRGFGFVSFGNADQANAALREMNGRMLNGKPLIVNIAQRRDQRFMMLRLQFQQRLQA 400
Query: 64 M--RMQQM 69
M RM M
Sbjct: 401 MMRRMHSM 408
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 30/74 (40%), Positives = 44/74 (59%)
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESL 279
P+T+ L EQ+ LG+RL+ + + P+ A KITGM LE+D E +L + L
Sbjct: 492 PITAEDLRTMSVDEQRAALGDRLYIKVFEIAPDHAPKITGMFLEMDLKEAFTLLNNQRLL 551
Query: 280 KSKVEEAVAVLQAH 293
+ KV EA+ VL+AH
Sbjct: 552 QEKVIEALCVLKAH 565
>gi|307188163|gb|EFN72995.1| E3 ubiquitin-protein ligase hyd [Camponotus floridanus]
Length = 2716
Score = 62.0 bits (149), Expect = 3e-07, Method: Composition-based stats.
Identities = 29/60 (48%), Positives = 42/60 (70%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LG+RL+P I + P LA KITGMLLE+ A+LL +L ++L+ KVEEA ++ +H
Sbjct: 2321 HQQQLGDRLYPKIHALRPALAEKITGMLLELSPAQLLMLLASEDALRQKVEEAFELIHSH 2380
>gi|297834512|ref|XP_002885138.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297330978|gb|EFH61397.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 542
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 29/68 (42%), Positives = 42/68 (61%), Gaps = 3/68 (4%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI--- 61
GRS+GFGFV F PE A KAV ++GR +GSK L+V A ++++R+ L +Y
Sbjct: 237 GRSRGFGFVNFCHPENAKKAVDSLHGRQVGSKTLFVGKALKRDERREMLKHKYRDNFIAK 296
Query: 62 ANMRMQQM 69
+NMR +
Sbjct: 297 SNMRWSNL 304
Score = 60.1 bits (144), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 30/57 (52%), Positives = 38/57 (66%), Gaps = 1/57 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+GRSKGFGFVCFS+ EE+ +A +NG + K L V +A+RKEDR L QY
Sbjct: 337 ENGRSKGFGFVCFSNREESKQAKRYLNGFSVDGKLLVVRVAERKEDRLKRL-QQYFH 392
Score = 41.6 bits (96), Expect = 0.41, Method: Compositional matrix adjust.
Identities = 20/51 (39%), Positives = 32/51 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
+ E+G+SKGFGFV F + + A A + ++G ++ K L+VA K +R A
Sbjct: 142 VEENGQSKGFGFVQFETEQSAVTARSALHGSMVDGKKLFVAKFINKNERVA 192
>gi|29841435|gb|AAP06467.1| similar to GenBank Accession Number AJ298278 poly(A) binding
protein in Rattus norvegicus [Schistosoma japonicum]
Length = 307
Score = 61.6 bits (148), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 32/75 (42%), Positives = 46/75 (61%), Gaps = 4/75 (5%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G+SKGFGFVC+ P+ A AV M+G+ I + LY A AQRKE+R+ L Q+I
Sbjct: 228 EGKSKGFGFVCYLDPDHAENAVRTMHGKEIEGRVLYCARAQRKEERQEELK----QKIEK 283
Query: 64 MRMQQMGQLFQPGST 78
R ++ +L+ ST
Sbjct: 284 QRAERQSRLYVQMST 298
Score = 43.1 bits (100), Expect = 0.14, Method: Compositional matrix adjust.
Identities = 21/51 (41%), Positives = 32/51 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
M E+G+SKG+GFV F E A +A+ ++N II + +YV K +RK+
Sbjct: 134 MDENGQSKGYGFVHFEKEECAERAIEKINNMIIRDRVVYVGKFIPKTERKS 184
>gi|357616934|gb|EHJ70493.1| hypothetical protein KGM_10406 [Danaus plexippus]
Length = 2852
Score = 61.6 bits (148), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 40/56 (71%)
Query: 238 LGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
LGERL+P + ++P AGKITGMLLE+ A+LL +L ++L+ KV EA+ ++ H
Sbjct: 2463 LGERLYPKVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVLH 2518
>gi|147863287|emb|CAN82615.1| hypothetical protein VITISV_036127 [Vitis vinifera]
Length = 88
Score = 61.2 bits (147), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 47/64 (73%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
++MLGE L+PL+ ++ E+A K+TGMLLE+ E L++LE E+LKSKV +A+ VL+
Sbjct: 7 RKMLGESLYPLVDQLEHEMAAKVTGMLLEMGQTEFLHLLESPEALKSKVAKAMDVLRNVA 66
Query: 295 AKQA 298
+QA
Sbjct: 67 QQQA 70
>gi|307203970|gb|EFN82877.1| E3 ubiquitin-protein ligase UBR5 [Harpegnathos saltator]
Length = 2836
Score = 61.2 bits (147), Expect = 5e-07, Method: Composition-based stats.
Identities = 28/60 (46%), Positives = 42/60 (70%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P + + P +A KITGMLLE+ A+LL +L ++L+ KVEEA ++ +H
Sbjct: 2441 HQQQLGERLYPKVHALRPAVAEKITGMLLELSPAQLLMLLASEDALRQKVEEAFELIHSH 2500
>gi|189237186|ref|XP_967079.2| PREDICTED: similar to ubiquitin-protein ligase [Tribolium castaneum]
Length = 2858
Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 49/74 (66%)
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q +Q LG+RL+P + ++P AG+ITGMLLE+ A+LL +L +SL++KVEEAV +
Sbjct: 2444 QLSAHQQQLGDRLYPKVYNLHPNFAGRITGMLLELSPAQLLLLLASEDSLRAKVEEAVEM 2503
Query: 290 LQAHQAKQAAVKKE 303
+ AH Q + E
Sbjct: 2504 ILAHLHSQQELTSE 2517
>gi|270007492|gb|EFA03940.1| hypothetical protein TcasGA2_TC014081 [Tribolium castaneum]
Length = 2916
Score = 61.2 bits (147), Expect = 6e-07, Method: Composition-based stats.
Identities = 33/74 (44%), Positives = 49/74 (66%)
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q +Q LG+RL+P + ++P AG+ITGMLLE+ A+LL +L +SL++KVEEAV +
Sbjct: 2502 QLSAHQQQLGDRLYPKVYNLHPNFAGRITGMLLELSPAQLLLLLASEDSLRAKVEEAVEM 2561
Query: 290 LQAHQAKQAAVKKE 303
+ AH Q + E
Sbjct: 2562 ILAHLHSQQELTSE 2575
>gi|111608842|gb|ABH10979.1| polyA-binding protein [Polytomella parva]
Length = 362
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 29/60 (48%), Positives = 42/60 (70%), Gaps = 3/60 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR---KAHLASQYM 58
+ DG S+GFGFVCF+S +A+ A+++MN I KPL+V L+QRKE R +A L +Y+
Sbjct: 63 TTDGISRGFGFVCFASASDASTAISKMNRTKIEGKPLHVCLSQRKEVRINQQARLGQRYI 122
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 32/82 (39%), Positives = 49/82 (59%), Gaps = 10/82 (12%)
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRM--------YP--ELAGKITGMLLEIDNAE 268
E T+ L P+EQK+++G +L+ IQ + YP E+ GKITGMLLE+ E
Sbjct: 259 ETFTAASLVDRSPEEQKRIIGNKLYLQIQNIFNTTVTTQYPLEEVCGKITGMLLEMSVDE 318
Query: 269 LLYMLEHNESLKSKVEEAVAVL 290
LL +++ NE+L +V+ A +L
Sbjct: 319 LLMVMDSNETLTEQVQAAHELL 340
>gi|273068254|gb|ACZ97550.1| apoptosis-promoting RNA-binding protein [Ornithodoros moubata]
Length = 204
Score = 60.8 bits (146), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 26/46 (56%), Positives = 35/46 (76%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
+ E+G+++GFGFV F PE A KAV E+NG+ +G KPLYV AQ+K
Sbjct: 158 VDENGKNRGFGFVSFEDPECAEKAVEELNGKDVGGKPLYVGRAQKK 203
Score = 42.7 bits (99), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 22/71 (30%), Positives = 38/71 (53%), Gaps = 3/71 (4%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA-LAQRKEDRKAHLASQYMQR 60
E+ SKG+GFV F + E A A++++NG ++ K ++V RKE + L +R
Sbjct: 66 DEEANSKGYGFVHFETEEAANNAISKVNGMLLNGKKVFVGRFIPRKE--RERLLGDKARR 123
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 124 FTNVYIKNFGD 134
>gi|354499752|ref|XP_003511970.1| PREDICTED: polyadenylate-binding protein 5-like [Cricetulus
griseus]
gi|344240775|gb|EGV96878.1| Polyadenylate-binding protein 5 [Cricetulus griseus]
Length = 382
Score = 60.5 bits (145), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 30/44 (68%), Positives = 33/44 (75%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGF VCFSS EEATKAV EMNG ++GSKPL V L Q
Sbjct: 334 MMEMGQGKGFAVVCFSSFEEATKAVDEMNGPVLGSKPLSVTLGQ 377
Score = 50.4 bits (119), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/53 (45%), Positives = 36/53 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G+SKGFGFV + + E A K+V +++G+ I K LYV AQ+K +R A L ++
Sbjct: 236 GKSKGFGFVRYETHEAAQKSVLDLHGKTIDGKVLYVGRAQKKIERLAELRRRF 288
Score = 42.0 bits (97), Expect = 0.37, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVWLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 198 FTNVFVKNLGDNMDDEKLKELFSE--------YGPTESVKV 230
>gi|328712997|ref|XP_001947833.2| PREDICTED: e3 ubiquitin-protein ligase hyd [Acyrthosiphon pisum]
Length = 2955
Score = 60.5 bits (145), Expect = 9e-07, Method: Composition-based stats.
Identities = 29/57 (50%), Positives = 42/57 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
+Q LGERL+P + ++ P LA KITGMLLE+ A+LL +L E+L+ +V EA+A+L
Sbjct: 2539 HQQQLGERLYPKVVQIRPSLASKITGMLLELSPAQLLTLLASEEALRMRVNEAIALL 2595
>gi|320581035|gb|EFW95257.1| polyadenylate-binding protein [Ogataea parapolymorpha DL-1]
Length = 541
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 38/98 (38%), Positives = 52/98 (53%), Gaps = 10/98 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNG-RIIGSKPLYVALAQRKED-----RKAHLAS 55
S +GRS+GFGFVCF+ P +A+KA+ MNG R+ S L V+ AQRKE+ R H
Sbjct: 382 SREGRSRGFGFVCFNKPLDASKALVSMNGYRVDDSHVLEVSFAQRKENKFEKGRLHHYNQ 441
Query: 56 QYMQRIANMRMQQMGQ--LFQPGS--TGGYFVPTLPQP 89
++ N Q + P S +GG+ T P P
Sbjct: 442 NHLGNFYNYLNQNFTKRSFSLPASMHSGGFVPMTAPSP 479
>gi|321470831|gb|EFX81806.1| hyperplastic disks-like protein [Daphnia pulex]
Length = 2828
Score = 60.5 bits (145), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 29/53 (54%), Positives = 39/53 (73%)
Query: 238 LGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
LGERL+P + + P LA KITGMLLE+ A+LL +L +SL+ +V EAVAV+
Sbjct: 2437 LGERLYPRVAALRPTLAAKITGMLLELSPAQLLMLLASEDSLEQRVNEAVAVI 2489
>gi|393905825|gb|EJD74081.1| E3 ubiquitin-protein ligase UBR5 [Loa loa]
Length = 2900
Score = 60.1 bits (144), Expect = 1e-06, Method: Composition-based stats.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 173 SVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
S+S AGR+ N+Y V +P + Q +P+ A TS AA +
Sbjct: 2430 SLSMAGRRRSLRNRYALSVSSPSYYSRHQPHLNEPSGDSESAAPSNIDNLTTSQASAAWE 2489
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P+ ++ LGERL ++ + P+L KITGMLL++ +L+ +L E L+++VEEA ++
Sbjct: 2490 PE--RETLGERLLARVRAIRPQLCNKITGMLLDLQPHQLITILASEELLRAQVEEASEMI 2547
Query: 291 QA 292
QA
Sbjct: 2548 QA 2549
>gi|194767643|ref|XP_001965924.1| GF11551 [Drosophila ananassae]
gi|190619767|gb|EDV35291.1| GF11551 [Drosophila ananassae]
Length = 2881
Score = 59.3 bits (142), Expect = 2e-06, Method: Composition-based stats.
Identities = 31/63 (49%), Positives = 40/63 (63%)
Query: 236 QMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295
Q LGERL+P I + P A KITGMLLEI +LL +L +E+L+ KV EAV ++ Q
Sbjct: 2498 QQLGERLYPKIHSLNPTHAPKITGMLLEIPTPQLLSVLSSDETLRQKVNEAVEIITFKQK 2557
Query: 296 KQA 298
A
Sbjct: 2558 TDA 2560
>gi|312089118|ref|XP_003146124.1| hypothetical protein LOAG_10552 [Loa loa]
Length = 1178
Score = 59.3 bits (142), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 41/122 (33%), Positives = 66/122 (54%), Gaps = 4/122 (3%)
Query: 173 SVSAAGRQTGGYNKY--PVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQ 230
S+S AGR+ N+Y V +P + Q +P+ A TS AA +
Sbjct: 1013 SLSMAGRRRSLRNRYALSVSSPSYYSRHQPHLNEPSGDSESAAPSNIDNLTTSQASAAWE 1072
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
P+ ++ LGERL ++ + P+L KITGMLL++ +L+ +L E L+++VEEA ++
Sbjct: 1073 PE--RETLGERLLARVRAIRPQLCNKITGMLLDLQPHQLITILASEELLRAQVEEASEMI 1130
Query: 291 QA 292
QA
Sbjct: 1131 QA 1132
>gi|195062465|ref|XP_001996197.1| GH22338 [Drosophila grimshawi]
gi|193899692|gb|EDV98558.1| GH22338 [Drosophila grimshawi]
Length = 2909
Score = 58.9 bits (141), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 42/68 (61%)
Query: 236 QMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295
Q LGERL+P I + A KITGMLLEI +LL +L +E+L+ KV EAV ++ Q
Sbjct: 2527 QQLGERLYPKIHSINSSHASKITGMLLEIPTPQLLSVLSSDETLRQKVNEAVEIINFKQK 2586
Query: 296 KQAAVKKE 303
+ V+ +
Sbjct: 2587 SEINVQNQ 2594
>gi|347966559|ref|XP_321295.5| AGAP001780-PA [Anopheles gambiae str. PEST]
gi|333470005|gb|EAA01513.5| AGAP001780-PA [Anopheles gambiae str. PEST]
Length = 3537
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/61 (44%), Positives = 44/61 (72%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
Q+Q LGERL+P +Q+ +P A KITGMLLE+ ++L++L +E+L+ ++ EAV ++
Sbjct: 3058 QQQQLGERLYPKVQQQHPNNAAKITGMLLELPPTQVLHLLASDENLRQRIGEAVEIIVQR 3117
Query: 294 Q 294
Q
Sbjct: 3118 Q 3118
>gi|15230352|ref|NP_188566.1| poly-A binding protein-like protein [Arabidopsis thaliana]
gi|11994457|dbj|BAB02459.1| poly(A)-binding protein-like [Arabidopsis thaliana]
gi|88900360|gb|ABD57492.1| At3g19350 [Arabidopsis thaliana]
gi|332642707|gb|AEE76228.1| poly-A binding protein-like protein [Arabidopsis thaliana]
Length = 103
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 30/72 (41%), Positives = 50/72 (69%), Gaps = 1/72 (1%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+ P+EQ+ ++GE LF +++ + P+ A KITGM+LE+D ++L++L ++ K V+E
Sbjct: 23 LASLPPKEQRDLIGETLFFMVEELEPQFAPKITGMILELDQDKVLHLLVTPKAFKEMVKE 82
Query: 286 AVAVLQAHQAKQ 297
A+ VL AH Q
Sbjct: 83 AMEVL-AHSFLQ 93
>gi|157114958|ref|XP_001652505.1| RNA-binding protein precursor, putative [Aedes aegypti]
gi|108877135|gb|EAT41360.1| AAEL007013-PA [Aedes aegypti]
Length = 122
Score = 58.5 bits (140), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 38/54 (70%), Gaps = 1/54 (1%)
Query: 5 GRSKGFGFVCF-SSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G SK GFVC+ + E A KA+ MNGR+I KP+YV +AQ++E+R LA+Q+
Sbjct: 50 GESKKHGFVCYGADSEAALKAIFYMNGRLIAGKPIYVNVAQKREERSKLLAAQF 103
>gi|340546029|gb|AEK51813.1| cytoplasmic poly(A) binding protein 1 [Alligator mississippiensis]
gi|402697275|gb|AFQ90825.1| polyA-binding protein cytoplasmic 1, partial [Anniella pulchra]
gi|402697277|gb|AFQ90826.1| polyA-binding protein cytoplasmic 1, partial [Chelydra serpentina]
gi|402697281|gb|AFQ90828.1| polyA-binding protein cytoplasmic 1, partial [Cyrtodactylus sp.
JJF-2012]
gi|402697287|gb|AFQ90831.1| polyA-binding protein cytoplasmic 1, partial [Draco beccarii]
gi|402697289|gb|AFQ90832.1| polyA-binding protein cytoplasmic 1, partial [Draco sumatranus]
Length = 177
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++
Sbjct: 122 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKF 177
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 30 DENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKEF 87
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 88 TNVYIKNFGE 97
>gi|344246646|gb|EGW02750.1| Polyadenylate-binding protein 1 [Cricetulus griseus]
Length = 127
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +++ L ++ Q
Sbjct: 61 DESGKSKGFGFVSFEKHEDAQKAVDEMNGKELNGKQIYVGRAQKKMEQQTELKRKFEQ 118
>gi|195400289|ref|XP_002058750.1| GJ11179 [Drosophila virilis]
gi|194147472|gb|EDW63179.1| GJ11179 [Drosophila virilis]
Length = 2881
Score = 58.5 bits (140), Expect = 4e-06, Method: Composition-based stats.
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 236 QMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295
Q LGERL+P I + A KITGMLLEI +LL +L +E+L+ KV EAV ++ Q
Sbjct: 2499 QQLGERLYPKIHSINSSHAAKITGMLLEIPTPQLLSVLSSDETLRQKVNEAVDIINFKQK 2558
Query: 296 KQAAVKKE 303
+ ++ +
Sbjct: 2559 SEINIQSQ 2566
>gi|340546033|gb|AEK51815.1| cytoplasmic poly(A) binding protein 1 [Ichthyophis bannanicus]
Length = 177
Score = 58.5 bits (140), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 26/53 (49%), Positives = 37/53 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G+SKGFGFV F E+A KAV EMNG+ + K ++V AQ+K +R+A L ++
Sbjct: 125 GKSKGFGFVSFEKHEDANKAVEEMNGKDVNGKMVFVGRAQKKVERQAELKRKF 177
Score = 39.7 bits (91), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 39/65 (60%), Gaps = 1/65 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
SKG+ FV F + + A +A+ +MNG ++ + ++V + +++R+A L ++ + N+ +
Sbjct: 34 SKGYAFVHFETQDAADRAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYI 92
Query: 67 QQMGQ 71
+ G
Sbjct: 93 KNFGD 97
>gi|443690323|gb|ELT92482.1| hypothetical protein CAPTEDRAFT_219094 [Capitella teleta]
Length = 2617
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 27/60 (45%), Positives = 42/60 (70%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
Q++ LGERL+P +Q + P LA KITGMLLE+ ++LL +L + L+ +V EA ++ +H
Sbjct: 2213 QRRQLGERLYPKVQSLQPALASKITGMLLELAPSQLLTLLTCEDQLRQRVYEAEEIIMSH 2272
>gi|357167535|ref|XP_003581210.1| PREDICTED: 40S ribosomal protein S19, mitochondrial-like
[Brachypodium distachyon]
Length = 137
Score = 58.2 bits (139), Expect = 4e-06, Method: Compositional matrix adjust.
Identities = 25/44 (56%), Positives = 34/44 (77%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
RSKGFGFV F+S EEA KA EMNG+++ + +YV +A+ K+DR
Sbjct: 75 RSKGFGFVKFASEEEANKARDEMNGKVLNGRVIYVDIAKAKQDR 118
>gi|297830584|ref|XP_002883174.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
gi|297329014|gb|EFH59433.1| predicted protein [Arabidopsis lyrata subsp. lyrata]
Length = 113
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 26/65 (40%), Positives = 46/65 (70%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+ P+ Q++M+GE L+ +++ + P A KITGM+LE+D + +++E E+LK V+E
Sbjct: 21 LASLPPETQRKMIGETLYQMVEELEPRFAPKITGMILELDQDRVFHLMESPEALKETVKE 80
Query: 286 AVAVL 290
A+ +L
Sbjct: 81 AMKIL 85
>gi|170051592|ref|XP_001861834.1| ubiquitin-protein ligase [Culex quinquefasciatus]
gi|167872771|gb|EDS36154.1| ubiquitin-protein ligase [Culex quinquefasciatus]
Length = 775
Score = 58.2 bits (139), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 40/117 (34%), Positives = 57/117 (48%), Gaps = 15/117 (12%)
Query: 178 GRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQM 237
R+T Y+ P R PA+ Q V G L P Q+Q
Sbjct: 322 SRKTLNYDARPFR--------------PASEQAQGAAVGGNSSPPFLHLNDGLPAHQQQ- 366
Query: 238 LGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294
LGERL+P +Q +YP A KITGMLL++ ++L +L ESL+ K EA+ ++ + Q
Sbjct: 367 LGERLYPKVQALYPNNAPKITGMLLDLPATQILMLLASEESLRQKANEALEIILSRQ 423
>gi|149066497|gb|EDM16370.1| progestin induced protein [Rattus norvegicus]
Length = 2550
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++VEEA+ ++ AH
Sbjct: 2145 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELIVAH 2204
>gi|19114339|ref|NP_593427.1| RNA-binding protein Mug28 [Schizosaccharomyces pombe 972h-]
gi|74698440|sp|Q9UT83.1|MUG28_SCHPO RecName: Full=Meiotically up-regulated gene 28 protein
gi|5706508|emb|CAB52270.1| RNA-binding protein Mug28 [Schizosaccharomyces pombe]
Length = 609
Score = 57.8 bits (138), Expect = 5e-06, Method: Compositional matrix adjust.
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
SKG+GFV FS P EA +A+ +NG + G K L+V A+++EDRK L++ + Q
Sbjct: 461 SKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQ 513
>gi|293348669|ref|XP_001061308.2| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Rattus norvegicus]
Length = 2782
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++VEEA+ ++ AH
Sbjct: 2377 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELIVAH 2436
>gi|392349474|ref|XP_003750387.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Rattus norvegicus]
Length = 2744
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++VEEA+ ++ AH
Sbjct: 2339 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELIVAH 2398
>gi|378405229|sp|Q62671.3|UBR5_RAT RecName: Full=E3 ubiquitin-protein ligase UBR5; AltName: Full=100 kDa
protein; AltName: Full=E3 ubiquitin-protein ligase, HECT
domain-containing 1; AltName: Full=Hyperplastic discs
protein homolog
Length = 2788
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++VEEA+ ++ AH
Sbjct: 2383 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELIVAH 2442
>gi|281204064|gb|EFA78260.1| RNA-binding region RNP-1 domain-containing protein [Polysphondylium
pallidum PN500]
Length = 617
Score = 57.8 bits (138), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 33/88 (37%), Positives = 49/88 (55%), Gaps = 22/88 (25%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+G+++GFGF+ +S+ EEA A+ +MNG I+GSKPL V+ + RK +
Sbjct: 493 ENGKNRGFGFLSYSTQEEANIAIEKMNGFILGSKPLSVSFSNRKYKK------------- 539
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQ 90
RMQQ+ + G P+ PQPQ
Sbjct: 540 --RMQQL-------QSNGSNDPSQPQPQ 558
Score = 38.1 bits (87), Expect = 5.1, Method: Compositional matrix adjust.
Identities = 17/54 (31%), Positives = 33/54 (61%), Gaps = 4/54 (7%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPL----YVALAQRKEDRKAH 52
E G SKG+G+V F + E + +A+ +NG ++ KP+ +V+ +R +++ H
Sbjct: 262 EKGVSKGYGYVHFETQESSDRAIQGVNGTMLCGKPITVEQFVSKVERFKEKNEH 315
>gi|318087106|gb|ADV40145.1| putative apoptosis-promoting RNA-binding protein TIA-1/TIAR
[Latrodectus hesperus]
Length = 332
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/58 (46%), Positives = 36/58 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+ KGFGFV F PE A KAV ++N + + K LYV AQ+K +R A L ++ Q
Sbjct: 208 DETGKPKGFGFVSFEDPENAEKAVNDLNNKELNGKVLYVGRAQKKSERAAELKRRFEQ 265
Score = 45.1 bits (105), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 18/20 (90%), Positives = 20/20 (100%)
Query: 4 DGRSKGFGFVCFSSPEEATK 23
+GRSKGFGFVCFS+PEEATK
Sbjct: 313 NGRSKGFGFVCFSAPEEATK 332
Score = 40.0 bits (92), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 38/70 (54%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+ SKG+GFV F + E A A+ ++NG ++ + ++V + +R+ L Q +R
Sbjct: 115 DEESNSKGYGFVHFETEEAANNAIQKVNGMLLNGRKVFVGKFVPRSEREKQLG-QKARRF 173
Query: 62 ANMRMQQMGQ 71
N+ ++ G
Sbjct: 174 MNVYIKNFGD 183
>gi|357440279|ref|XP_003590417.1| Polyadenylate-binding protein [Medicago truncatula]
gi|355479465|gb|AES60668.1| Polyadenylate-binding protein [Medicago truncatula]
Length = 591
Score = 57.8 bits (138), Expect = 7e-06, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 42/59 (71%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
E+G+SKGFGFV + SP++A +A+ M+G GSK LYVA AQ+K +R+ L ++++
Sbjct: 228 DENGQSKGFGFVNYDSPDDARRAMEAMDGSQFGSKILYVARAQKKVEREQILHHLFVEK 286
Score = 50.8 bits (120), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 23/48 (47%), Positives = 31/48 (64%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
SEDG+SKGFG++ F S E A A+ +MNG + K +YV RK +R
Sbjct: 137 SEDGKSKGFGYIQFDSEESANVAIQKMNGSTVRDKQIYVGKFIRKSER 184
>gi|432907705|ref|XP_004077674.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like isoform 2 [Oryzias
latipes]
Length = 2796
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P + M P A KITGMLLE+ A+LL +L +SL+++VEEA+ +L AH
Sbjct: 2389 HRQALGERLYPRVHTMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELLIAH 2448
>gi|402697291|gb|AFQ90833.1| polyA-binding protein cytoplasmic 1, partial [Malaclemys terrapin]
Length = 175
Score = 57.4 bits (137), Expect = 8e-06, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L
Sbjct: 122 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTEL 173
Score = 43.9 bits (102), Expect = 0.084, Method: Compositional matrix adjust.
Identities = 19/65 (29%), Positives = 41/65 (63%), Gaps = 1/65 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ + N+ +
Sbjct: 34 SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFTNVYI 92
Query: 67 QQMGQ 71
+ G+
Sbjct: 93 KNFGE 97
>gi|432907703|ref|XP_004077673.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like isoform 1 [Oryzias
latipes]
Length = 2792
Score = 57.4 bits (137), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P + M P A KITGMLLE+ A+LL +L +SL+++VEEA+ +L AH
Sbjct: 2385 HRQALGERLYPRVHTMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELLIAH 2444
>gi|47217880|emb|CAG05002.1| unnamed protein product [Tetraodon nigroviridis]
Length = 2317
Score = 57.0 bits (136), Expect = 9e-06, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P + M P A KITGMLLE+ A+LL +L +SL+++VEEA+ +L AH
Sbjct: 1903 HRQALGERLYPRVHAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMDLLIAH 1962
>gi|398016302|ref|XP_003861339.1| poly(A)-binding protein, putative [Leishmania donovani]
gi|322499565|emb|CBZ34638.1| poly(A)-binding protein, putative [Leishmania donovani]
Length = 544
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%)
Query: 216 QGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEH 275
Q Q+ + L+ P++QK LGE L+ I + A KITGMLLE+ E+ +L
Sbjct: 464 QRQDGVDMNYLSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILAD 523
Query: 276 NESLKSKVEEAVAVLQAH 293
+ +L SK++EA AVLQ H
Sbjct: 524 HFALLSKIQEANAVLQQH 541
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G KGF FVCF + A+ A+ +NG+ + KPLYV+ A++K+ R L QR
Sbjct: 325 NGTFKGFAFVCFEDRQHASAALRSLNGQPLEHSKKPLYVSHAEQKDMRIRLL----QQRR 380
Query: 62 ANMRMQ 67
A MR Q
Sbjct: 381 AAMRHQ 386
Score = 38.5 bits (88), Expect = 3.6, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G SKG+GFV F + E A KA +MNG +G + VA R+ DR+ A +
Sbjct: 136 GNSKGYGFVQFETAEGA-KAALDMNGSKLGDSEVVVAPFVRRVDREVMAAKSF 187
>gi|402697297|gb|AFQ90836.1| polyA-binding protein cytoplasmic 1, partial [Testudo hermanni]
Length = 176
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 27/52 (51%), Positives = 35/52 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L
Sbjct: 122 DESGKSKGFGFVSFERHEDAQKAVXEMNGKELNGKQIYVGRAQKKVERQTEL 173
Score = 43.9 bits (102), Expect = 0.081, Method: Compositional matrix adjust.
Identities = 21/70 (30%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 30 DENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKEF 87
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 88 TNVYIKNFGE 97
>gi|348543929|ref|XP_003459434.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform 2 [Oreochromis
niloticus]
Length = 2792
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P + M P A KITGMLLE+ A+LL +L +SL+++VEEA+ +L AH
Sbjct: 2386 HRQALGERLYPRVHAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELLIAH 2445
>gi|339717490|pdb|3NTW|A Chain A, Structure Of The Mlle Domain Of Edd In Complex With A Pam2
Peptide From Paip1
gi|339717492|pdb|3NTW|C Chain C, Structure Of The Mlle Domain Of Edd In Complex With A Pam2
Peptide From Paip1
Length = 65
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++VEEA+ ++ AH
Sbjct: 6 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELIVAH 65
>gi|146088402|ref|XP_001466041.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
gi|134070143|emb|CAM68476.1| putative poly(A)-binding protein 3 [Leishmania infantum JPCM5]
Length = 544
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 32/78 (41%), Positives = 46/78 (58%)
Query: 216 QGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEH 275
Q Q+ + L+ P++QK LGE L+ I + A KITGMLLE+ E+ +L
Sbjct: 464 QRQDGVDMNYLSTLSPEQQKNYLGELLYSRILPLESSNAAKITGMLLEMSREEIFEILAD 523
Query: 276 NESLKSKVEEAVAVLQAH 293
+ +L SK++EA AVLQ H
Sbjct: 524 HFALLSKIQEANAVLQQH 541
Score = 43.5 bits (101), Expect = 0.11, Method: Compositional matrix adjust.
Identities = 27/66 (40%), Positives = 38/66 (57%), Gaps = 6/66 (9%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G KGF FVCF + A+ A+ +NG+ + KPLYV+ A++K+ R L QR
Sbjct: 325 NGTFKGFAFVCFEDRQHASAALRSLNGQPLEHSKKPLYVSHAEQKDMRIRLL----QQRR 380
Query: 62 ANMRMQ 67
A MR Q
Sbjct: 381 AAMRHQ 386
Score = 38.5 bits (88), Expect = 3.5, Method: Compositional matrix adjust.
Identities = 22/53 (41%), Positives = 30/53 (56%), Gaps = 1/53 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G SKG+GFV F + E A KA +MNG +G + VA R+ DR+ A +
Sbjct: 136 GNSKGYGFVQFETAEGA-KAALDMNGSKLGDSEVVVAPFVRRVDREVMAAKSF 187
>gi|410904807|ref|XP_003965883.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like isoform 1 [Takifugu
rubripes]
Length = 2791
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P + M P A KITGMLLE+ A+LL +L +SL+++VEEA+ +L AH
Sbjct: 2385 HRQALGERLYPRVHAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELLIAH 2444
>gi|410904811|ref|XP_003965885.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like isoform 3 [Takifugu
rubripes]
Length = 2801
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P + M P A KITGMLLE+ A+LL +L +SL+++VEEA+ +L AH
Sbjct: 2395 HRQALGERLYPRVHAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELLIAH 2454
>gi|410904809|ref|XP_003965884.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like isoform 2 [Takifugu
rubripes]
Length = 2784
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P + M P A KITGMLLE+ A+LL +L +SL+++VEEA+ +L AH
Sbjct: 2379 HRQALGERLYPRVHAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELLIAH 2438
>gi|348543927|ref|XP_003459433.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform 1 [Oreochromis
niloticus]
Length = 2795
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 43/60 (71%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P + M P A KITGMLLE+ A+LL +L +SL+++VEEA+ +L AH
Sbjct: 2389 HRQALGERLYPRVHAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELLIAH 2448
>gi|307095208|gb|ADN29910.1| poly A binding protein cytoplasmic 1 isoform 1-like protein
[Triatoma matogrossensis]
Length = 341
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 29/72 (40%), Positives = 48/72 (66%), Gaps = 5/72 (6%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGR-IIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+++D +S+GFGFV F PE A +AV ++NG+ II K LYV AQ+K +R+ L ++ Q
Sbjct: 227 VNKDQKSRGFGFVAFEDPEAAERAVEDLNGKEIIEGKQLYVGRAQKKAERQQELKRKFEQ 286
Query: 60 RIANMRMQQMGQ 71
++M++M +
Sbjct: 287 ----LKMERMNR 294
Score = 45.4 bits (106), Expect = 0.034, Method: Compositional matrix adjust.
Identities = 22/72 (30%), Positives = 42/72 (58%), Gaps = 1/72 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E ATK++ ++NG ++ K ++V +++R+ L + +
Sbjct: 135 DESGSSKGYGFVHFETEEAATKSIDKVNGMLLNGKKVFVGKFIPRKEREKELGEK-AKLF 193
Query: 62 ANMRMQQMGQLF 73
N+ ++ G+ F
Sbjct: 194 TNVYVKNFGEDF 205
>gi|38541222|gb|AAH62832.1| Pabpc1a protein, partial [Danio rerio]
Length = 327
Score = 57.0 bits (136), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/60 (46%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M++D G+SKGFGFV F E+A +AV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 223 MTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQ 282
Score = 43.5 bits (101), Expect = 0.12, Method: Compositional matrix adjust.
Identities = 20/70 (28%), Positives = 44/70 (62%), Gaps = 2/70 (2%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A + ++ +
Sbjct: 133 DENG-SKGYGFVHFETHEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEMGAR-AKEF 190
Query: 62 ANMRMQQMGQ 71
N+ ++ G+
Sbjct: 191 TNVYIKNFGE 200
>gi|426236177|ref|XP_004012049.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Ovis aries]
Length = 3098
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2693 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2752
>gi|148676853|gb|EDL08800.1| mCG3530 [Mus musculus]
Length = 2820
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2415 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2474
>gi|55535|emb|CAA45756.1| 100 kDa protein [Rattus norvegicus]
Length = 889
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 31/60 (51%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++VEEA+ ++ AH
Sbjct: 484 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELIVAH 543
>gi|163310753|ref|NP_001106192.1| E3 ubiquitin-protein ligase UBR5 isoform 2 [Mus musculus]
Length = 2792
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2387 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2446
>gi|76363510|sp|Q80TP3.2|UBR5_MOUSE RecName: Full=E3 ubiquitin-protein ligase UBR5; AltName: Full=E3
ubiquitin-protein ligase, HECT domain-containing 1;
AltName: Full=Hyperplastic discs protein homolog
Length = 2792
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2387 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2446
>gi|301603847|ref|XP_002931579.1| PREDICTED: e3 ubiquitin-protein ligase UBR5-like isoform 2 [Xenopus
(Silurana) tropicalis]
Length = 2792
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2386 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2445
>gi|281340155|gb|EFB15739.1| hypothetical protein PANDA_011631 [Ailuropoda melanoleuca]
Length = 2785
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2380 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2439
>gi|47498599|gb|AAT28194.1| hyperplastic discs protein [Mus musculus]
Length = 2792
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2387 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2446
>gi|301603845|ref|XP_002931578.1| PREDICTED: e3 ubiquitin-protein ligase UBR5-like isoform 1 [Xenopus
(Silurana) tropicalis]
Length = 2792
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2386 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2445
>gi|449284076|gb|EMC90657.1| E3 ubiquitin-protein ligase UBR5, partial [Columba livia]
Length = 2775
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2370 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2429
>gi|9545980|gb|AAF88143.1|U95000_1 hyd protein [Homo sapiens]
Length = 2798
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2392 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2451
>gi|332830972|ref|XP_003311934.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Pan troglodytes]
Length = 2295
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 1889 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 1948
>gi|431901751|gb|ELK08628.1| E3 ubiquitin-protein ligase UBR5, partial [Pteropus alecto]
Length = 2768
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2363 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2422
>gi|395512227|ref|XP_003760344.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform 2 [Sarcophilus
harrisii]
Length = 2792
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2387 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2446
>gi|351712113|gb|EHB15032.1| E3 ubiquitin-protein ligase UBR5, partial [Heterocephalus glaber]
Length = 2774
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2369 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2428
>gi|402878881|ref|XP_003903092.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5
[Papio anubis]
Length = 2782
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2377 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2436
>gi|119612252|gb|EAW91846.1| E3 ubiquitin protein ligase, HECT domain containing, 1, isoform CRA_d
[Homo sapiens]
Length = 2799
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>gi|410360392|gb|JAA44705.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
Length = 2793
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2387 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2446
>gi|397502236|ref|XP_003821771.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5 [Pan
paniscus]
Length = 2792
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2387 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2446
>gi|383418961|gb|AFH32694.1| E3 ubiquitin-protein ligase UBR5 [Macaca mulatta]
Length = 2793
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2387 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2446
>gi|334326089|ref|XP_003340712.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase UBR5-like
[Monodelphis domestica]
Length = 2785
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2380 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2439
>gi|326917966|ref|XP_003205264.1| PREDICTED: LOW QUALITY PROTEIN: e3 ubiquitin-protein ligase UBR5-like
[Meleagris gallopavo]
Length = 2827
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2422 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2481
>gi|119612249|gb|EAW91843.1| E3 ubiquitin protein ligase, HECT domain containing, 1, isoform CRA_a
[Homo sapiens]
Length = 2798
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>gi|395818122|ref|XP_003782486.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform 2 [Otolemur
garnettii]
Length = 2792
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2387 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2446
>gi|345326581|ref|XP_001508746.2| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Ornithorhynchus
anatinus]
Length = 2577
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2172 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2231
>gi|441647848|ref|XP_003255970.2| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Nomascus leucogenys]
Length = 2553
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2147 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2206
>gi|410987612|ref|XP_004000092.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5
[Felis catus]
Length = 2798
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>gi|410224636|gb|JAA09537.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
gi|410262454|gb|JAA19193.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
Length = 2801
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2395 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2454
>gi|410224634|gb|JAA09536.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
gi|410262452|gb|JAA19192.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
gi|410307104|gb|JAA32152.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
gi|410360394|gb|JAA44706.1| ubiquitin protein ligase E3 component n-recognin 5 [Pan troglodytes]
Length = 2799
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>gi|380799029|gb|AFE71390.1| E3 ubiquitin-protein ligase UBR5, partial [Macaca mulatta]
Length = 2497
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2091 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2150
>gi|163310751|ref|NP_001074828.2| E3 ubiquitin-protein ligase UBR5 isoform 1 [Mus musculus]
Length = 2798
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>gi|449495044|ref|XP_002199000.2| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Taeniopygia guttata]
Length = 2775
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2370 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2429
>gi|444727942|gb|ELW68415.1| E3 ubiquitin-protein ligase UBR5 [Tupaia chinensis]
Length = 2032
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 1627 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 1686
>gi|350583014|ref|XP_003481418.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like [Sus scrofa]
Length = 1742
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 1336 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 1395
>gi|426360423|ref|XP_004047442.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Gorilla gorilla gorilla]
Length = 2553
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2147 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2206
>gi|380799027|gb|AFE71389.1| E3 ubiquitin-protein ligase UBR5, partial [Macaca mulatta]
Length = 2513
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2107 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2166
>gi|355698141|gb|EHH28689.1| E3 ubiquitin-protein ligase UBR5, partial [Macaca mulatta]
gi|355779871|gb|EHH64347.1| E3 ubiquitin-protein ligase UBR5, partial [Macaca fascicularis]
Length = 2779
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2373 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2432
>gi|327269442|ref|XP_003219503.1| PREDICTED: e3 ubiquitin-protein ligase UBR5-like [Anolis
carolinensis]
Length = 2795
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2389 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2448
>gi|417515766|gb|JAA53693.1| E3 ubiquitin-protein ligase UBR5 [Sus scrofa]
Length = 2792
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2387 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2446
>gi|395739960|ref|XP_002819391.2| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5
[Pongo abelii]
Length = 2736
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2331 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2390
>gi|390476106|ref|XP_002759366.2| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Callithrix jacchus]
Length = 2788
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2383 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2442
>gi|363731030|ref|XP_003640895.1| PREDICTED: E3 ubiquitin-protein ligase UBR5-like [Gallus gallus]
Length = 2787
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2382 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2441
>gi|109087122|ref|XP_001100326.1| PREDICTED: e3 ubiquitin-protein ligase UBR5 [Macaca mulatta]
Length = 2799
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>gi|15147337|ref|NP_056986.2| E3 ubiquitin-protein ligase UBR5 [Homo sapiens]
gi|20137621|sp|O95071.2|UBR5_HUMAN RecName: Full=E3 ubiquitin-protein ligase UBR5; AltName: Full=E3
ubiquitin-protein ligase, HECT domain-containing 1;
AltName: Full=Hyperplastic discs protein homolog;
Short=hHYD; AltName: Full=Progestin-induced protein
gi|15029597|gb|AAD01259.2| progestin induced protein [Homo sapiens]
gi|187951631|gb|AAI37235.1| Ubiquitin protein ligase E3 component n-recognin 5 [Homo sapiens]
Length = 2799
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>gi|71891755|dbj|BAA74919.3| KIAA0896 protein [Homo sapiens]
Length = 2820
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2415 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2474
>gi|395512225|ref|XP_003760343.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform 1 [Sarcophilus
harrisii]
Length = 2798
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>gi|383411539|gb|AFH28983.1| E3 ubiquitin-protein ligase UBR5 [Macaca mulatta]
Length = 2799
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>gi|168273114|dbj|BAG10396.1| E3 ubiquitin-protein ligase EDD1 [synthetic construct]
Length = 2798
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>gi|300793668|ref|NP_001179346.1| E3 ubiquitin-protein ligase UBR5 [Bos taurus]
gi|296480529|tpg|DAA22644.1| TPA: ubiquitin protein ligase E3 component n-recognin 5 [Bos taurus]
Length = 2798
Score = 56.6 bits (135), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>gi|344272993|ref|XP_003408312.1| PREDICTED: LOW QUALITY PROTEIN: E3 ubiquitin-protein ligase UBR5-like
[Loxodonta africana]
Length = 2789
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2384 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2443
>gi|301774460|ref|XP_002922646.1| PREDICTED: e3 ubiquitin-protein ligase UBR5-like [Ailuropoda
melanoleuca]
Length = 2814
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2409 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2468
>gi|403299932|ref|XP_003940725.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 [Saimiri boliviensis
boliviensis]
Length = 2799
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>gi|395818120|ref|XP_003782485.1| PREDICTED: E3 ubiquitin-protein ligase UBR5 isoform 1 [Otolemur
garnettii]
Length = 2798
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
>gi|353235325|emb|CCA67340.1| related to protein mediates microtubule-dependent mRNA transport
[Piriformospora indica DSM 11827]
Length = 853
Score = 56.6 bits (135), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 40/56 (71%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV F +PE+A +A+ MNG ++GSK + V L + K+ RK LA ++
Sbjct: 333 NEHGQSRGFGFVSFQTPEQAARALQAMNGALLGSKQIVVRLHEPKQLRKEKLAQRF 388
Database: nr
Posted date: Mar 3, 2013 10:45 PM
Number of letters in database: 999,999,864
Number of sequences in database: 2,912,245
Database: /local_scratch/syshi//blastdatabase/nr.01
Posted date: Mar 3, 2013 10:52 PM
Number of letters in database: 999,999,666
Number of sequences in database: 2,912,720
Database: /local_scratch/syshi//blastdatabase/nr.02
Posted date: Mar 3, 2013 10:58 PM
Number of letters in database: 999,999,938
Number of sequences in database: 3,014,250
Database: /local_scratch/syshi//blastdatabase/nr.03
Posted date: Mar 3, 2013 11:03 PM
Number of letters in database: 999,999,780
Number of sequences in database: 2,805,020
Database: /local_scratch/syshi//blastdatabase/nr.04
Posted date: Mar 3, 2013 11:08 PM
Number of letters in database: 999,999,551
Number of sequences in database: 2,816,253
Database: /local_scratch/syshi//blastdatabase/nr.05
Posted date: Mar 3, 2013 11:13 PM
Number of letters in database: 999,999,897
Number of sequences in database: 2,981,387
Database: /local_scratch/syshi//blastdatabase/nr.06
Posted date: Mar 3, 2013 11:18 PM
Number of letters in database: 999,999,649
Number of sequences in database: 2,911,476
Database: /local_scratch/syshi//blastdatabase/nr.07
Posted date: Mar 3, 2013 11:24 PM
Number of letters in database: 999,999,452
Number of sequences in database: 2,920,260
Database: /local_scratch/syshi//blastdatabase/nr.08
Posted date: Mar 3, 2013 11:25 PM
Number of letters in database: 64,230,274
Number of sequences in database: 189,558
Lambda K H
0.315 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,879,160,265
Number of Sequences: 23463169
Number of extensions: 218494832
Number of successful extensions: 797625
Number of sequences better than 100.0: 1000
Number of HSP's better than 100.0 without gapping: 4656
Number of HSP's successfully gapped in prelim test: 2590
Number of HSP's that attempted gapping in prelim test: 780836
Number of HSP's gapped (non-prelim): 17066
length of query: 303
length of database: 8,064,228,071
effective HSP length: 141
effective length of query: 162
effective length of database: 9,050,888,538
effective search space: 1466243943156
effective search space used: 1466243943156
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 76 (33.9 bits)