BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14476
(303 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 290 bits (742), Expect = 8e-78, Method: Compositional matrix adjust.
Identities = 180/328 (54%), Positives = 206/328 (62%), Gaps = 44/328 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQ------ 438
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASV 174
G QGF +P SA R S + +R + + M G G Q S
Sbjct: 439 -QGGRPQGFQGMP---SAIRQSGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSC 494
Query: 175 SAAGRQTGGYN------------------KY--PVRNPGTQPQAQIGGIQPAAAGVQAVH 214
+ G T N KY VR+P P IQP A AVH
Sbjct: 495 QSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSP--HP-----AIQPLQAPQPAVH 547
Query: 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLE 274
VQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE
Sbjct: 548 VQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLE 607
Query: 275 HNESLKSKVEEAVAVLQAHQAKQAAVKK 302
ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 608 SPESLRSKVDEAVAVLQAHHAKKEAAQK 635
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS G+ +V F P +A +A+ MN +I KP+ + +QR RK+ + + +++ +
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNL 106
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 282 bits (722), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.5 bits (145), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS G+ +V F P +A +A+ MN +I KP+ + +QR RK+ + + +++ +
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNL 106
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 282 bits (721), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS G+ +V F P +A +A+ MN +I KP+ + +QR RK+ + + +++ +
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNL 106
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 282 bits (721), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS G+ +V F P +A +A+ MN +I KP+ + +QR RK+ + + +++ +
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNL 106
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 282 bits (721), Expect = 2e-75, Method: Compositional matrix adjust.
Identities = 173/316 (54%), Positives = 211/316 (66%), Gaps = 31/316 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A PA + + + P ++ QPQ + QPA VHVQGQEPLT++M
Sbjct: 498 AAAATPAVRTVPQYKYAAGVRNPQQHLNAQPQVTMQ--QPA------VHVQGQEPLTASM 549
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 LASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 610 AVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS G+ +V F P +A +A+ MN +I KP+ + +QR RK+ + + +++ +
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNL 106
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 278 bits (712), Expect = 3e-74, Method: Compositional matrix adjust.
Identities = 177/324 (54%), Positives = 210/324 (64%), Gaps = 47/324 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA------ 439
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN------MSARPITGQST--MGPRGGGP 165
G F N+P R +APR + +R A+ MS + + ST MGPR
Sbjct: 440 QGARPHPFQNMPGAIRPAAPRPPF--STMRPASSQVPRVMSTQRVANTSTQTMGPRPAAA 497
Query: 166 MQAPG------PASVSAAGRQTGGYNKYPVRNP--GTQPQAQIGGIQPAAAGVQAVHVQG 217
A P AAG VRNP Q Q+ QPA VHVQG
Sbjct: 498 ATAATPAVRTVPQYKYAAG----------VRNPQQHLNAQPQVTMQQPA------VHVQG 541
Query: 218 QEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
QEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE E
Sbjct: 542 QEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPE 601
Query: 278 SLKSKVEEAVAVLQAHQAKQAAVK 301
SL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 602 SLRSKVDEAVAVLQAHQAKEAAQK 625
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 38/58 (65%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
Score = 36.6 bits (83), Expect = 0.25, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS G+ +V F P +A +A+ MN +I KP+ + +QR RK+ + + +++ +
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNL 106
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 274 bits (700), Expect = 7e-73, Method: Compositional matrix adjust.
Identities = 158/328 (48%), Positives = 201/328 (61%), Gaps = 45/328 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+GRSKGFGFVCF++ EAT AVTE+NGR++GSKPLYVALAQRKE+RKAHLASQYM+ +
Sbjct: 321 DEEGRSKGFGFVCFNAASEATCAVTELNGRVVGSKPLYVALAQRKEERKAHLASQYMRHM 380
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ 121
MRMQQ+GQ++QP + G+FVPTLP QRF+G TQ+R PRW PQ+RP
Sbjct: 381 TGMRMQQLGQIYQPNAASGFFVPTLPSNQRFFGSQVATQMRNTPRW--VPQVRPPAAIQG 438
Query: 122 GFPNI----------------------------PQFRSAPRASTGQTVIRGANMSARPIT 153
PQ + A+ +R N AR IT
Sbjct: 439 VQAGAAAAGGFQGTAGAVPTQFRSAAAGARGAQPQVQGTHAAAAAANNMR--NTGARAIT 496
Query: 154 GQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTQPQAQIGGIQPAAAGVQ 211
GQ T P MQ PG A ++T Y KY +RNP P Q+ QP +Q
Sbjct: 497 GQQTAAPN----MQIPGAQIAGGAQQRTSNY-KYTSNMRNP---PVPQLHQTQPIPQQLQ 548
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
+ E L +++LA A+PQEQKQ+LGERL+P+I+ M+ LAGKITGMLLEI+N+ELL+
Sbjct: 549 G---KNSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLH 605
Query: 272 MLEHNESLKSKVEEAVAVLQAHQAKQAA 299
M+E E+LK+KVEEAVAVLQ H+ + A
Sbjct: 606 MIEDQEALKAKVEEAVAVLQVHRVTEPA 633
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%), Gaps = 1/56 (1%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV F + E A AV +NG+ +G K LYVA AQ+K +R+ L ++
Sbjct: 218 EDGKSKGFGFVAFETTEAAEAAVQALNGKDMGEGKSLYVARAQKKAERQQELKRKF 273
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 22/83 (26%), Positives = 42/83 (50%), Gaps = 1/83 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G SKG+GFV F + E A ++ ++NG ++ K +YV +++R+ L + +
Sbjct: 124 DEKGNSKGYGFVHFETEEAANTSIDKVNGMLLNGKKVYVGKFIPRKEREKELGEK-AKLF 182
Query: 62 ANMRMQQMGQLFQPGSTGGYFVP 84
N+ ++ + F +F P
Sbjct: 183 TNVYVKNFTEDFDDEKLKEFFEP 205
Score = 35.8 bits (81), Expect = 0.43, Method: Compositional matrix adjust.
Identities = 14/40 (35%), Positives = 25/40 (62%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
RS G+ +V F P +A +A+ MN ++ +KP+ + +QR
Sbjct: 41 RSLGYAYVNFQQPADAERALDTMNFDLVRNKPIRIMWSQR 80
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 273 bits (697), Expect = 2e-72, Method: Compositional matrix adjust.
Identities = 170/316 (53%), Positives = 204/316 (64%), Gaps = 33/316 (10%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQ-MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA------- 109
+A++R+ + +QP + YF+ +P Q +Y P Q+ Q+RP PRW A
Sbjct: 386 MASVRVPNPVINPYQPPPSS-YFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARPHP 444
Query: 110 ----APQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGP 165
A +RPS F + PR + Q V AN T TMGPR
Sbjct: 445 FQNMAGAIRPSAPRPPTFSTMRPTSQVPRVMSAQRV---AN------TSTQTMGPRPTTA 495
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
A A + + + ++ TQPQ + QPA VHVQGQEPLT++M
Sbjct: 496 AAAATSAVRTVPQYKYAAGVRNTQQHLNTQPQVAMQ--QPA------VHVQGQEPLTASM 547
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 548 LAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 607
Query: 286 AVAVLQAHQAKQAAVK 301
AVAVLQAHQAK+AA K
Sbjct: 608 AVAVLQAHQAKEAAQK 623
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 26/60 (43%), Positives = 41/60 (68%), Gaps = 1/60 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M++D G+S+GFGFV F E+A KAV +MNG+ + K ++V AQ+K +R+ L ++ Q
Sbjct: 223 MTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQ 282
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 20/82 (24%), Positives = 46/82 (56%), Gaps = 1/82 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQLFQPGSTGGYF 82
N+ ++ G+ +F
Sbjct: 190 FTNVYIKNFGEDMDDERLKEWF 211
Score = 36.6 bits (83), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 17/57 (29%), Positives = 33/57 (57%), Gaps = 1/57 (1%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS G+ +V F P +A +A+ MN +I KP+ + +QR RK+ + + +++ +
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNL 106
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 270 bits (689), Expect = 1e-71, Method: Compositional matrix adjust.
Identities = 179/323 (55%), Positives = 211/323 (65%), Gaps = 47/323 (14%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQ-MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPS 116
+A++R+ + +QP + YF+ +P Q +Y P Q+ Q+RP PRW A
Sbjct: 386 MASVRVPNPVINPYQPPPSS-YFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTA------Q 438
Query: 117 GQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN-----MSARPITGQST--MGPRGGGPMQ 167
G F N+P R +APR T T+ +N MSA+ + ST MGPR
Sbjct: 439 GARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRVMSAQRVANTSTQTMGPRPTTAAA 498
Query: 168 APG------PASVSAAGRQTGGYNKYPVRNP---GTQPQAQIGGIQPAAAGVQAVHVQGQ 218
A P AAG VRN TQPQ + QPA VHVQGQ
Sbjct: 499 AAASAVRAVPQYKYAAG----------VRNQQHLNTQPQVAMQ--QPA------VHVQGQ 540
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ES
Sbjct: 541 EPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES 600
Query: 279 LKSKVEEAVAVLQAHQAKQAAVK 301
L+SKV+EAVAVLQAHQAK+AA K
Sbjct: 601 LRSKVDEAVAVLQAHQAKEAAQK 623
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 39/58 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
++G+SKGFGFV F E+A KAV EMNG+ + K ++V AQ+K +R+ L ++ Q
Sbjct: 225 DDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 43/71 (60%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETQEAAERAIDKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G
Sbjct: 190 FTNVYIKNFGD 200
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 264 bits (675), Expect = 5e-70, Method: Compositional matrix adjust.
Identities = 168/319 (52%), Positives = 203/319 (63%), Gaps = 42/319 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAP------ 111
+A++R Q GYF+ +PQ Q +Y P+Q+ ++RP PRW A
Sbjct: 386 MASVRAVPN----QRAPPSGYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPF 441
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVI---RGANMSARPITGQSTMGPRGGGPMQA 168
Q +PS G P +P P +S V+ R AN S + T+GPR A
Sbjct: 442 QNKPSA-IRPGAPRVPFSTMRPASSQVPRVMSTQRVANTSTQ------TVGPRPAAAAAA 494
Query: 169 PGPASVSAAGRQTGGYNKYP--VRNP----GTQPQAQIGGIQPAAAGVQAVHVQGQEPLT 222
+V R KY VRNP QPQ + + AVHVQGQE LT
Sbjct: 495 AATPAVRTVPRY-----KYAAGVRNPQQHRNAQPQVTMQQL--------AVHVQGQETLT 541
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++ LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLYMLE ESL+SK
Sbjct: 542 ASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSK 601
Query: 283 VEEAVAVLQAHQAKQAAVK 301
V+EAVAVLQAHQAK+A K
Sbjct: 602 VDEAVAVLQAHQAKEATQK 620
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 28/58 (48%), Positives = 37/58 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 225 DESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 19/71 (26%), Positives = 44/71 (61%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 131 VCDENGSKGYGFVHFETHEAAERAIKKMNGMLLNGRKVFVGQFKSRKEREAELGAR-AKE 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FPNVYIKNFGE 200
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 261 bits (666), Expect = 6e-69, Method: Compositional matrix adjust.
Identities = 165/320 (51%), Positives = 205/320 (64%), Gaps = 42/320 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQPQR--FYGPTQMTQIRPQPRWAAAPQMRP 115
+A MR +G QP + YF+PT+PQP FY P + +RP P+WA+ Q RP
Sbjct: 386 LATMRAMPGPLLGSFQQPAN---YFLPTMPQPSNRAFYSPNPVAPVRPAPQWASH-QSRP 441
Query: 116 SGQTAQGFPNIPQFRSAP--RASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
Q P P R+ P R + + ++ A ST PR P+Q+ A+
Sbjct: 442 ----PQYQPPAPLMRAVPPRRMHSNISTMKQA----------STQVPRV--PLQSQRVAN 485
Query: 174 VSAAGRQTGG----YNKYPVRN-PGTQPQAQIGGIQPAAAGVQ-------AVHVQGQEPL 221
+ G QT G N +R P + + +QP + AV +QGQEPL
Sbjct: 486 I---GTQTAGARAQVNASIMRAMPHYKYSCGVRNVQPIGSSAHLQQVLEPAVLMQGQEPL 542
Query: 222 TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
T+++LAAA QEQKQ+LGER++PLI M+P LAGKITGMLLEIDN+ELL+MLE ESL S
Sbjct: 543 TASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHS 602
Query: 282 KVEEAVAVLQAHQAKQAAVK 301
KVEEAVAVLQAHQAK++A K
Sbjct: 603 KVEEAVAVLQAHQAKESAPK 622
Score = 59.3 bits (142), Expect = 3e-08, Method: Compositional matrix adjust.
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M GRS+GFGFV + + EEA KAVTEMNG+ + + +YV AQ++ +R+ L ++ Q
Sbjct: 224 MDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQ 282
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 17/65 (26%), Positives = 38/65 (58%), Gaps = 1/65 (1%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
S+G+GFV F + E A +A+ MNG ++ + ++V + + +R+ ++ M+ N+ +
Sbjct: 137 SRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME-FTNVYI 195
Query: 67 QQMGQ 71
+ G+
Sbjct: 196 KNFGE 200
Score = 35.4 bits (80), Expect = 0.55, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
RS G+ ++ F P +A +A+ MN +I +P+ + +QR
Sbjct: 50 RSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRD 90
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 259 bits (662), Expect = 2e-68, Method: Compositional matrix adjust.
Identities = 164/320 (51%), Positives = 199/320 (62%), Gaps = 42/320 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQP--QRFYGPTQMTQIRPQPRWAAAPQMRP 115
+A MR +G QP + YF+P +PQP + FY P + +R P+W + Q RP
Sbjct: 386 LATMRAMPGPLLGSFQQPAN---YFLPAMPQPPNRTFYSPNPVAPVRQAPQWTSH-QSRP 441
Query: 116 SGQTAQGFPNIPQFRSAP--RASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
Q P P R+ P R S+ + ++ A ST PR AP
Sbjct: 442 ----PQYQPPAPLMRAVPPRRMSSNISTMKQA----------STQVPR-----VAPHSQR 482
Query: 174 VSAAGRQTGG----YNKYPVRN-PGTQPQAQIGGIQPAAAGVQ-------AVHVQGQEPL 221
V+ G QT G N +R P + + +QP AV +QGQEPL
Sbjct: 483 VANIGTQTAGARAQVNPSIMRTMPHYKYSCAVRNVQPIGTNTHLQQVMEPAVLMQGQEPL 542
Query: 222 TSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
T++ LA+A PQEQKQMLGERL+PLI M+P LAGKITGMLLEIDN+ELL+MLE ESL S
Sbjct: 543 TASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHS 602
Query: 282 KVEEAVAVLQAHQAKQAAVK 301
KVEEAVAVLQAHQAK+ + K
Sbjct: 603 KVEEAVAVLQAHQAKENSQK 622
Score = 59.3 bits (142), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M + GRS+GFGFV + + EEA KAV+EMNG+ + + +YV AQ++ +R+ L ++ Q
Sbjct: 224 MDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQ 282
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+G+GFV F + E A +A+ MNG ++ + ++V + + +R+ ++ M+
Sbjct: 131 VCDEHGSRGYGFVHFETQEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME- 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
Score = 35.4 bits (80), Expect = 0.52, Method: Compositional matrix adjust.
Identities = 13/41 (31%), Positives = 24/41 (58%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
RS G+ ++ F P +A +A+ MN +I +P+ + +QR
Sbjct: 50 RSLGYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRD 90
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 258 bits (658), Expect = 5e-68, Method: Compositional matrix adjust.
Identities = 159/308 (51%), Positives = 197/308 (63%), Gaps = 18/308 (5%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQ---QMGQLFQPGSTGGYFVPTLPQP--QRFYGPTQMTQIRPQPRWAAAPQMRP 115
+A MR +G QP + YF+ +PQP + FY P + +RP P+WA+ Q RP
Sbjct: 386 LATMRAMPGPLLGSFQQPAN---YFLSAMPQPPNRTFYSPNPVAPVRPAPQWASH-QSRP 441
Query: 116 SGQTAQGFPNIPQFRSAP--RASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
Q P P R+ R S+ + ++ A+ P Q + G A A
Sbjct: 442 ----PQYQPPTPLMRAVQPRRMSSNISTMKQASTQV-PRVAQHSQRVANIGTQTAGARAQ 496
Query: 174 VSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQE 233
V+ + +T + KY QP +Q AV +QGQEPLT+++LA A PQE
Sbjct: 497 VNPSMMRTMPHYKYSCGVRNVQPIVSSTHLQQVME--PAVLMQGQEPLTASLLAGAPPQE 554
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
QKQMLGER++P+I M+P LAGKITGMLLEIDN+ELL+MLE ESL SKVEEAVAVLQAH
Sbjct: 555 QKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEEAVAVLQAH 614
Query: 294 QAKQAAVK 301
QAK+ A K
Sbjct: 615 QAKENAQK 622
Score = 60.1 bits (144), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M + GRS+GFGFV + + EEA KAV+EMNG+ + + +YV AQ++ +R++ L ++ Q
Sbjct: 224 MDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQ 282
Score = 42.4 bits (98), Expect = 0.005, Method: Compositional matrix adjust.
Identities = 17/71 (23%), Positives = 41/71 (57%), Gaps = 1/71 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++ S+G+GFV F + E A +A+ MNG ++ + ++V + + +R+ ++ M+
Sbjct: 131 VCDEHGSRGYGFVHFETHEAANRAIQTMNGMLLNDRKVFVGHFKSRRERELEYGAKVME- 189
Query: 61 IANMRMQQMGQ 71
N+ ++ G+
Sbjct: 190 FTNVYIKNFGE 200
Score = 33.1 bits (74), Expect = 2.4, Method: Compositional matrix adjust.
Identities = 12/41 (29%), Positives = 23/41 (56%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
RS + ++ F P +A +A+ MN +I +P+ + +QR
Sbjct: 50 RSLSYAYINFQQPADAERALDTMNFEVIKGRPIRIMWSQRD 90
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 248 bits (632), Expect = 5e-65, Method: Compositional matrix adjust.
Identities = 158/311 (50%), Positives = 192/311 (61%), Gaps = 43/311 (13%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP---QRFYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG +T +P PRW + P R
Sbjct: 386 LSTMRTLSNPLLGSFQQPSS---YFLPAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-R 441
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQT---VIRGANMSARPIT-GQSTMGPRGGGPMQAPG 170
PS + P +P+ A +S Q V R + R G T GP G G PG
Sbjct: 442 PSCASMVRPPVVPRRPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCC-TPG 500
Query: 171 ----PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTML 226
P S+A T Y V+ P AVH+ GQEPLT++ML
Sbjct: 501 RPLLPCKCSSAAHST-----YRVQEP-------------------AVHIPGQEPLTASML 536
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEA 286
AAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL +K++EA
Sbjct: 537 AAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEA 596
Query: 287 VAVLQAHQAKQ 297
VAVLQAHQA +
Sbjct: 597 VAVLQAHQAME 607
Score = 48.9 bits (115), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 228 GHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
Score = 42.7 bits (99), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/53 (32%), Positives = 34/53 (64%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
S+GFGFV F + E A +A+ MNG ++ + ++V + + +R+A L ++ ++
Sbjct: 137 SRGFGFVHFETHEAAQQAINTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 135/301 (44%), Positives = 165/301 (54%), Gaps = 35/301 (11%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G S+GFGFVC+SSP+EATKAV+EMNG++IG+KPLYVALAQRK+ R+ L SQ QR
Sbjct: 364 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQR- 422
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAA-APQMRPSGQTA 120
A RMQ G F PG G + QP Y P P + P M P
Sbjct: 423 AQQRMQ-YGAGF-PGMQG-----YMGQPMYGY--------PPMPGYGQPMPGMPPVRGPM 467
Query: 121 QGFPNIPQ--FRSAPRAS-TGQTVIRGANMSARPITGQSTMGPRGGGPMQ--APG----P 171
G+P PQ +S PR + GQ + G P G P G P PG P
Sbjct: 468 MGYPGAPQNMMQSRPRFNPNGQPLPGGV-----PAYGMPPQVPYPGAPGYPVRPGGARIP 522
Query: 172 ASVSAAGRQTGGYNKYPVRNPGTQPQAQI--GGIQPAAAGVQAVHVQGQEPLTSTMLAAA 229
A+ +A G + GG + PV P P I GG PA QA L + LA A
Sbjct: 523 AAPNANGPRNGGPS--PVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARA 580
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
P EQKQMLGE L+PLI PELAGKITGMLLE+DNAELL+++E +L+ KV+EA+ V
Sbjct: 581 APAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRV 640
Query: 290 L 290
L
Sbjct: 641 L 641
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
E G SKGFGFV + + E A KAV E+N + + K LY AQ K +R+A L + ++
Sbjct: 261 DEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEK 319
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G+S+GF FV +S+ E A A+ +NG ++ K +YV K++R +A
Sbjct: 168 DENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFT 227
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 228 NVYIKNV 234
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 163 bits (412), Expect = 2e-39, Method: Compositional matrix adjust.
Identities = 135/301 (44%), Positives = 165/301 (54%), Gaps = 35/301 (11%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+ G S+GFGFVC+SSP+EATKAV+EMNG++IG+KPLYVALAQRK+ R+ L SQ QR
Sbjct: 364 DDSGVSRGFGFVCYSSPDEATKAVSEMNGKMIGTKPLYVALAQRKDVRRQALESQIAQR- 422
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAA-APQMRPSGQTA 120
A RMQ G F PG G + QP Y P P + P M P
Sbjct: 423 AQQRMQ-YGAGF-PGMQG-----YMGQPMYGY--------PPMPGYGQPMPGMPPVRGPM 467
Query: 121 QGFPNIPQ--FRSAPRAS-TGQTVIRGANMSARPITGQSTMGPRGGGPMQ--APG----P 171
G+P PQ +S PR + GQ + G P G P G P PG P
Sbjct: 468 MGYPGAPQNMMQSRPRFNPNGQPLPGGV-----PAYGMPPQVPYPGAPGYPVRPGGARIP 522
Query: 172 ASVSAAGRQTGGYNKYPVRNPGTQPQAQI--GGIQPAAAGVQAVHVQGQEPLTSTMLAAA 229
A+ +A G + GG + PV P P I GG PA QA L + LA A
Sbjct: 523 AAPNANGPRNGGPS--PVGAPQGLPAGSIPRGGQMPARPHEQAAPAPQAGRLDAQSLARA 580
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
P EQKQMLGE L+PLI PELAGKITGMLLE+DNAELL+++E +L+ KV+EA+ V
Sbjct: 581 APAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQEKVDEALRV 640
Query: 290 L 290
L
Sbjct: 641 L 641
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 25/59 (42%), Positives = 35/59 (59%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
E G SKGFGFV + + E A KAV E+N + + K LY AQ K +R+A L + ++
Sbjct: 261 DEKGVSKGFGFVNYENHESARKAVDELNEKEVNGKKLYAGRAQTKSEREAELKKSHEEK 319
Score = 42.4 bits (98), Expect = 0.004, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 37/67 (55%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G+S+GF FV +S+ E A A+ +NG ++ K +YV K++R +A
Sbjct: 168 DENGKSRGFAFVHYSTGEAADAAIKAVNGMLLNDKKVYVGHHVGKKERLSKVEELRAQFT 227
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 228 NVYIKNV 234
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 144 bits (362), Expect = 1e-33, Method: Compositional matrix adjust.
Identities = 129/331 (38%), Positives = 155/331 (46%), Gaps = 70/331 (21%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR--IA 62
G+SKGFGFVCFSSP+EA+KAVTEMN R+I KPLYVALAQRK+ R++ L + R I
Sbjct: 420 GKSKGFGFVCFSSPDEASKAVTEMNQRMINGKPLYVALAQRKDVRRSQLEASIQARNTIR 479
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI----------RPQP-RWAAAP 111
+ + QP QP FYGP Q I PQP P
Sbjct: 480 QQQAAAAAGMPQP----------YMQPAVFYGPGQQGFIPGGQRGGLPFAPQPGMMMGVP 529
Query: 112 QMRPSGQTAQGFPNI-------------PQF-RSAPRASTGQTVIRGANMSARPITGQST 157
RP GQ FP P F + P + G I N P GQ
Sbjct: 530 GGRP-GQYPGPFPGQQGGRGMGPNQQIPPNFAQGIPMGAMGPGGI--PNGMGYPQMGQVQ 586
Query: 158 MGPRGGGPMQAPG---------------PASVSAAGRQTGGYNKYPVRNPGTQPQAQIGG 202
G GG Q PG V G+ G R QP A G
Sbjct: 587 FGRGAGGRGQVPGMPMGQGMRGPGYGQGRGGVPVQGQMRPGQGG---RGQNAQPAAGRGE 643
Query: 203 IQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLL 262
PAA LT+ LAAA +QKQMLGE L+P IQ PELAGKITGMLL
Sbjct: 644 EAPAAG------------LTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLL 691
Query: 263 EIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
E+DN ELL +LE +E+L++KV+EA++V +
Sbjct: 692 EMDNTELLSLLEDDEALRAKVDEALSVYDEY 722
Score = 54.7 bits (130), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV +S+ + A AV EMN + + + LYV AQ+K +R+ L QY
Sbjct: 263 DQEGKSRGFGFVNYSTHDSAQAAVDEMNDKEVKGQKLYVGRAQKKHEREEELRKQY 318
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 26/83 (31%), Positives = 42/83 (50%), Gaps = 11/83 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 170 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 229
Query: 55 SQYM----QRIANMRMQQMGQLF 73
+ Y+ Q I+ +QM + F
Sbjct: 230 NVYIKNLDQEISEEEFRQMFEKF 252
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 118/312 (37%), Positives = 152/312 (48%), Gaps = 62/312 (19%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVCFSSPEEATKA+TEMN R+I KPLYVALAQRK+ R++ L Q R
Sbjct: 368 VDETGKSKGFGFVCFSSPEEATKAITEMNQRMIYGKPLYVALAQRKDVRRSQLEQQIQAR 427
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
MRMQ +TGG +P P FYG QP + P+G+
Sbjct: 428 -NQMRMQ------NAAATGG--IPGQFIPPMFYG--------QQPGF-----FPPNGRGN 465
Query: 121 QGFPN-IPQFRSAPRAST----GQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVS 175
FP PQ PR GQ G N P+ G M P GG + +
Sbjct: 466 GPFPGPNPQMM-MPRGQIPPPQGQWPRPGPNGQPVPVYG---MPPVYGGDFN-----NGA 516
Query: 176 AAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQK 235
GRQ GY YP RN Q Q G Q A + +A A +QK
Sbjct: 517 NGGRQQRGY--YPNRN-----QNQKGRQQKDLAAI---------------IANAPADQQK 554
Query: 236 QMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
++LGE L+P I + PE AGKITGM+L++DN E+L +LE +E + E+A+ +
Sbjct: 555 RILGEELYPKIVSTGKAQEPEAAGKITGMMLDLDNEEILALLEDDELFNTHFEDALTAFE 614
Query: 292 AHQAKQAAVKKE 303
++ A E
Sbjct: 615 EYKKSSEAATAE 626
Score = 58.5 bits (140), Expect = 6e-08, Method: Compositional matrix adjust.
Identities = 28/70 (40%), Positives = 42/70 (60%), Gaps = 4/70 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+SKGFGFV F + E A KAV E+N + I + +YV AQ+K +R L QY
Sbjct: 266 DHEGKSKGFGFVNFENHESAVKAVDELNDKEINGQKIYVGRAQKKRERLEELKKQY---- 321
Query: 62 ANMRMQQMGQ 71
N R++++ +
Sbjct: 322 ENTRLEKLSK 331
Score = 33.9 bits (76), Expect = 1.6, Method: Compositional matrix adjust.
Identities = 23/78 (29%), Positives = 40/78 (51%), Gaps = 8/78 (10%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLASQY 57
G SK FGFV + + E A A+ +NG ++ + +YV K+DR KA+ + Y
Sbjct: 176 GISKCFGFVHYETAEAAEAAIENVNGMLLNDREVYVGKHISKKDRESKFEEMKANFTNVY 235
Query: 58 MQRIA-NMRMQQMGQLFQ 74
+ I + ++ +LF+
Sbjct: 236 AKNIDLDFSEEEFKKLFE 253
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 134 bits (338), Expect = 7e-31, Method: Compositional matrix adjust.
Identities = 108/289 (37%), Positives = 144/289 (49%), Gaps = 55/289 (19%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
SKGFGFVC+++P+EAT+AVTEMNGR+IG+KPLYVALAQRK+ R+A L Q+ Q+
Sbjct: 324 SKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKTGIR 383
Query: 67 QQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPR-WAAAPQMRPSGQTAQGFPN 125
QQM + GS +F P PQ Y Q+ P+PR W P P GQ A N
Sbjct: 384 QQMPPTY--GSGPVFFTPAPVNPQVVY-----QQMMPRPRNWNGQPVGVPQGQYA----N 432
Query: 126 IPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPR--GGGPMQ-APGPASVSAAGRQTG 182
+ R PR + GPR GG P Q P P
Sbjct: 433 MNYARGQPRQN----------------------GPRQNGGQPRQNGPRP--------DVS 462
Query: 183 GYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGERL 242
G PV+ T AQ Q A++ A+++Q +++ +Q LGE L
Sbjct: 463 GAQPIPVQQQTTLDVAQTQ--QAASSAESALNLQ-------SIINLPSRDQQNVALGEHL 513
Query: 243 FPLIQRMYPELAGKITGMLLE-IDNAELLYMLEHNESLKSKVEEAVAVL 290
+PLI P+LAGKITGMLL+ + EL + + + L K+ EA+ VL
Sbjct: 514 YPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADKIREALEVL 562
Score = 53.1 bits (126), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 26/58 (44%), Positives = 35/58 (60%), Gaps = 1/58 (1%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
M++D G+SKGFGF F S E A V NG+I KP+Y AQ+K +R+A L +
Sbjct: 220 MADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAELKHTF 277
Score = 39.7 bits (91), Expect = 0.027, Method: Compositional matrix adjust.
Identities = 18/50 (36%), Positives = 33/50 (66%), Gaps = 1/50 (2%)
Query: 1 MSEDGRS-KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+++DG S KGFGFV + + E A KA+ ++NG +I + ++V + ++R
Sbjct: 130 VTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKER 179
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 110/304 (36%), Positives = 147/304 (48%), Gaps = 73/304 (24%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+SKGFGFVC+++PEEA KAVTEMN R++ KPLYVALAQRKE R++ L +Q R
Sbjct: 398 DEQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQAR- 456
Query: 62 ANMRMQQMGQ------LFQPGST-------GGYFVPTLPQPQRFYGPTQMTQIRPQPRWA 108
R+QQ Q G+T GGY +P + P P P +
Sbjct: 457 NQFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVNGRGM--PMVPGHNGPMPMYP 514
Query: 109 AAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSAR-PITGQSTMGPRGGGPMQ 167
P P+G A G+P M+AR P+ Q G PM
Sbjct: 515 GMPTQFPAGGPAPGYP---------------------GMNARGPVPAQ-------GRPMM 546
Query: 168 APGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
PG SV +AG A+ + PA G+ E T+ LA
Sbjct: 547 MPG--SVPSAG------------------PAEAEAV-PAVPGM-------PERFTAADLA 578
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
A + +KQ+LGE L+P + +L+GKITGMLLE+ N+ELL +LE + +L +V EA+
Sbjct: 579 AVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAI 638
Query: 288 AVLQ 291
VLQ
Sbjct: 639 GVLQ 642
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 25/70 (35%), Positives = 43/70 (61%), Gaps = 4/70 (5%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++ + +GFGFV +++ E A KAV E+N + K LYV AQ+K +R+ L +Y Q
Sbjct: 295 DQNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQ-- 352
Query: 62 ANMRMQQMGQ 71
M++++M +
Sbjct: 353 --MKLEKMNK 360
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 41/81 (50%), Gaps = 8/81 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHL 53
+ E G +KG+GFV F S E A A+ +NG ++ K +YV + +R KA+
Sbjct: 201 VDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANF 260
Query: 54 ASQYMQRI-ANMRMQQMGQLF 73
+ Y++ + + Q+ LF
Sbjct: 261 TNVYIKNLDTEITEQEFSDLF 281
Score = 34.3 bits (77), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 24/41 (58%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
RS G+ +V F + E+ KA+ E+N +I +P + +QR
Sbjct: 119 RSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRD 159
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 128 bits (322), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 110/313 (35%), Positives = 147/313 (46%), Gaps = 86/313 (27%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVCFSSPEEATKA+TEMN R+ KPLYVALAQRK+ R++ L Q R
Sbjct: 369 VDETGKSKGFGFVCFSSPEEATKAITEMNQRMFFGKPLYVALAQRKDVRRSQLEQQIQAR 428
Query: 61 IANMRMQQM-------GQLFQPGSTG--GYFVPTLPQPQRFYGPT-QMTQIRPQP----- 105
MRMQ GQ P G G+F P F GP QM R QP
Sbjct: 429 -NQMRMQNAAATGGIPGQFIPPMFYGQQGFFPPNGRGNAPFPGPNPQMIMRRGQPFGGPE 487
Query: 106 RWAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGP 165
+W P+ P+GQ +P + P+A + G N+
Sbjct: 488 QW---PRPGPNGQP------VPVYGIPPQAYSD---FNGQNI------------------ 517
Query: 166 MQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTM 225
RQ GY YP RN Q Q L + +
Sbjct: 518 -------------RQQRGY--YPNRNQNKGRQ--------------------QRDL-AAI 541
Query: 226 LAAAQPQEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
+A+A P +QK++LGE L+P I + PE AGKITGM+L++DN E+L +LE +E +
Sbjct: 542 IASAPPDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALLEDDELFTN 601
Query: 282 KVEEAVAVLQAHQ 294
E+A+ + ++
Sbjct: 602 HFEDALTAFEEYK 614
Score = 34.3 bits (77), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 23/79 (29%), Positives = 41/79 (51%), Gaps = 8/79 (10%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLASQY 57
G+SK FGFV + + E A A+ +NG ++ + ++V K+DR KA+ + Y
Sbjct: 177 GQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEIKANFTNIY 236
Query: 58 MQRIA-NMRMQQMGQLFQP 75
++ I + + +LF P
Sbjct: 237 VKNIDLEYSEEDLKKLFTP 255
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 122 bits (305), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 127/322 (39%), Positives = 158/322 (49%), Gaps = 50/322 (15%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR--IA 62
G+SKGFGFVCFSSP+EA+KAVTEMN R++ KPLYVALAQRK+ R++ L + R I
Sbjct: 430 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIR 489
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIR---------PQP--RWAAAP 111
+ + QP Y QP FYGP Q I PQP A P
Sbjct: 490 QQQAAAAAGMPQP-----YM-----QPAVFYGPGQQGFIPGQRGGIAFPPQPGMVMAGIP 539
Query: 112 QMRPSGQTAQGFPNI-------------PQFRSAPRASTGQTVIRGANMSARPITGQSTM 158
RP GQ FP P F+ P + V G M Q
Sbjct: 540 GGRP-GQYPGPFPGQQGGRGMGPNQQLPPNFQGIPMGAMQGPVPNG--MGYPQGMAQVQF 596
Query: 159 GPRGGGPMQAPGPASVSAAGRQTGGYNK---YPVR----NPGTQPQAQIGGIQPAAAGVQ 211
G GG Q PG ++ R G PV+ PG + Q PA +
Sbjct: 597 GRGAGGRGQVPGMPNMGQGMRGPGYGQGRGGVPVQQGQMRPGQGGRGQNAAQAPAGRPEE 656
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
AV LT+ L+AA P +QKQMLGE L+P IQ PELAGKITGMLLE++N ELL
Sbjct: 657 AV----AGGLTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLS 712
Query: 272 MLEHNESLKSKVEEAVAVLQAH 293
+LE E+L++KV+EA+ V +
Sbjct: 713 LLEDEEALRAKVDEALNVYDEY 734
Score = 57.8 bits (138), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 38/56 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV FS+ E A AV EMN + I ++ LYV AQ+K +R+ L QY
Sbjct: 264 DQEGKSRGFGFVNFSTHESAQAAVDEMNEKEIRTQKLYVGRAQKKHEREEELRKQY 319
Score = 46.6 bits (109), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 171 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 230
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I ++ ++ +LF+
Sbjct: 231 NVYIKNIDQDVTEEEFRELFE 251
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 121 bits (304), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 113/312 (36%), Positives = 151/312 (48%), Gaps = 68/312 (21%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G+SKGFGFVCFSSPEEATKA+TEMN R+I KPLYVALAQRK+ R++ L Q
Sbjct: 374 MVDDAGKSKGFGFVCFSSPEEATKAITEMNQRMIQGKPLYVALAQRKDVRRSQLEQQIQA 433
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQT 119
R MRMQ G G + P FYG QP + P+G+
Sbjct: 434 R-NQMRMQNAAA--AAGMPGQFMSPM------FYGQ--------QPGF-----FPPNGRG 471
Query: 120 -AQG-FPNIPQFRSAPRAST-----GQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPA 172
AQG FP PQ PR GQ G N P+ G M P GG P
Sbjct: 472 GAQGPFPPNPQM-MMPRGGQMPPPQGQWPRAGPNGQPVPVYG---MPPVYGGEFNGP--- 524
Query: 173 SVSAAGRQTGGYNKYPVRN-PGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQP 231
+ +Q G Y P RN G +PQ + I ++
Sbjct: 525 --NGQRQQRGAYP--PNRNQKGGRPQRDLAAI----------------------ISTVPV 558
Query: 232 QEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
+QK++LGE L+P I + PE AGKITGM+L+++N E+L +LE +E ++ E+A+
Sbjct: 559 DQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILALLEDDELFENHFEDAL 618
Query: 288 AVLQAHQAKQAA 299
+ ++ + A
Sbjct: 619 TAFEEYKKGEQA 630
Score = 52.8 bits (125), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 29/73 (39%), Positives = 40/73 (54%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
++G+S+GFGFV F + E A AV EMN + I + LYV AQ+K +R L Y R
Sbjct: 273 DQEGKSRGFGFVNFENHESALNAVKEMNDKEIDGQKLYVGRAQKKRERLDELKRLYESTR 332
Query: 61 IANMRMQQMGQLF 73
+ + Q LF
Sbjct: 333 LEKLSKYQGVNLF 345
Score = 34.3 bits (77), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 24/85 (28%), Positives = 44/85 (51%), Gaps = 11/85 (12%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G+SK FGFV + + E A A+ +NG ++ + ++V K DR KA+
Sbjct: 180 DELGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHVSKRDRESKFEEMKANFT 239
Query: 55 SQYMQRIA----NMRMQQMGQLFQP 75
+ Y++ +A N + +++ + F P
Sbjct: 240 NVYVKNLAPEVDNAKFEEIFKPFGP 264
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 118 bits (295), Expect = 6e-26, Method: Compositional matrix adjust.
Identities = 109/315 (34%), Positives = 146/315 (46%), Gaps = 65/315 (20%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G+SKGFGFVCFS+PEEATKA+TEMN R++ KPLYVALAQRK+ R++ L Q
Sbjct: 383 MVDDAGKSKGFGFVCFSTPEEATKAITEMNQRMVNGKPLYVALAQRKDVRRSQLEQQIQA 442
Query: 60 RIANMRMQQM-------GQLFQPGSTG--GYFVPTLPQPQRFYGPT--QMTQIRPQPRWA 108
R MRMQ GQ P G G+F P F GP M + R QP
Sbjct: 443 R-NQMRMQNAAAAGGLPGQFMPPMFYGQQGFFPPNGRGNAPFPGPNPQMMMRGRGQPFPE 501
Query: 109 AAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA 168
P+ P+GQ + PQF+ G NM RP Q
Sbjct: 502 QWPRPGPNGQPVPVYGMPPQFQD----------FNGQNM--RPQQQQQQQ---------- 539
Query: 169 PGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAA 228
+Q GY YP R PA V A + + ++A
Sbjct: 540 ---QQQQQQQQQQRGY--YPNR--------------PAGGNVPAKDL-------AALIAN 573
Query: 229 AQPQEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
A + QK++LGE L+ I + PE AGKITGM+L ++N E+L +L+ E + E
Sbjct: 574 APLEAQKRILGEELYQRIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDEELFNNHFE 633
Query: 285 EAVAVLQAHQAKQAA 299
EA+ + ++ + A
Sbjct: 634 EALNAFEEYKNSEGA 648
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 30/71 (42%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RIA 62
+G+SKGFGFV F E A KAV E+N + I + +YV AQ+K +R L QY R+
Sbjct: 284 EGKSKGFGFVNFEEHEAAAKAVEELNDKEINGQKIYVGRAQKKRERTEELKKQYEAVRLE 343
Query: 63 NMRMQQMGQLF 73
+ Q LF
Sbjct: 344 KLSKYQGVNLF 354
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 18/49 (36%), Positives = 30/49 (61%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
G+SK FGFV + + E A A+ +NG ++ + +YV K+DR++ L
Sbjct: 192 GQSKCFGFVHYETEEAAQAAIESVNGMLLNDREVYVGKHVSKKDRESKL 240
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 115 bits (289), Expect = 3e-25, Method: Compositional matrix adjust.
Identities = 111/318 (34%), Positives = 149/318 (46%), Gaps = 83/318 (26%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVCF++PEEATKA+TEMN R+I KPLYVALAQRK+ R++ L Q R
Sbjct: 369 VDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQAR 428
Query: 61 IANMRMQQM------GQLFQPGSTG--GYFVPT------LPQPQRFYGPTQMTQIRPQPR 106
MRMQ GQ P G G+F P P P P M + R QP
Sbjct: 429 -NQMRMQNAAAGGLPGQFIPPMFYGQQGFFPPNGRGNAPYPGP----NPQMMMRGRGQPF 483
Query: 107 WAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPM 166
P+ P+GQ + PQF Q G NM RP Q PRGG
Sbjct: 484 PEQWPRPGPNGQPVPVYGIPPQF---------QQDFNGQNM--RPQQ-QQQQQPRGG--- 528
Query: 167 QAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTML 226
YP RN ++ + AA + +V
Sbjct: 529 -------------------YYPNRNQTSK--------RDLAAIISSV------------- 548
Query: 227 AAAQPQE-QKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS 281
PQ+ QK++LGE L+P I + PE AGKITGM+L ++N E+L +L+ +E +
Sbjct: 549 ----PQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDDELFNN 604
Query: 282 KVEEAVAVLQAHQAKQAA 299
E+A+ + ++ +AA
Sbjct: 605 HFEDALTAFEEYKKSEAA 622
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 27/56 (48%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+DG+SKGFGFV F E A KAV E+N + I + +YV AQ+K +R L QY
Sbjct: 267 DQDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQY 322
Score = 36.6 bits (83), Expect = 0.26, Method: Compositional matrix adjust.
Identities = 25/82 (30%), Positives = 42/82 (51%), Gaps = 8/82 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G+SK FGFV + + E A A+ +NG ++ + ++V K+DR KA+
Sbjct: 174 DEFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFT 233
Query: 55 SQYMQRIA-NMRMQQMGQLFQP 75
+ Y++ I N + +LF P
Sbjct: 234 NIYVKNIDLNYSEESFEKLFSP 255
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 111 bits (278), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 125/307 (40%), Positives = 165/307 (53%), Gaps = 59/307 (19%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G S+GFGFVC+S+PEEA KAV+EMNG+++ ++PLYVALAQRK+ R+ L +Q MQR
Sbjct: 367 GVSRGFGFVCYSAPEEANKAVSEMNGKMLDNRPLYVALAQRKDVRRQQLEAQIMQRNQLR 426
Query: 65 RM-----QQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAA---PQ---M 113
Q MG PG G Y+ PQP F P Q + P+PR+A A PQ M
Sbjct: 427 LQQQAAAQGMGY---PGP-GMYY----PQPGAF--PGQPGGMVPRPRYAPAGMMPQGMPM 476
Query: 114 RPSGQTAQGFPN--IPQ-FRSA--PRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA 168
P GQ Q FP +PQ +R A PR + ARP TG + A
Sbjct: 477 APYGQPGQ-FPAGMMPQGYRPARPPRGAPNAAGGPAPPAGARPPTGVNG----------A 525
Query: 169 PGPASVSAAGRQTGGYNKYPV-RNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLA 227
P PA G+ P+ R P +P + QP A T+ LA
Sbjct: 526 PRPAGQPVPGQ--------PMPRGPAARPAGRPEADQPGAL-------------TAAALA 564
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
A P+EQKQMLGE ++P + PELAGK+TGM+LE+ ELL++LE +E+L +KV EA+
Sbjct: 565 KASPEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEAL 624
Query: 288 AVLQAHQ 294
VL+ +Q
Sbjct: 625 EVLKEYQ 631
Score = 54.7 bits (130), Expect = 9e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 34/56 (60%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
EDG+SKGFGFV F EA KAV E++ + L+VA AQ+K +R+ L Y
Sbjct: 261 DEDGKSKGFGFVNFEDHNEAQKAVDELHDSDFKGQKLFVARAQKKSEREEELRRSY 316
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 103 bits (258), Expect = 1e-21, Method: Compositional matrix adjust.
Identities = 104/307 (33%), Positives = 142/307 (46%), Gaps = 53/307 (17%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVC+SSPEEATKAVTEMN R++ KPLYV LAQRK+ R++ L Q +Q
Sbjct: 363 VDEAGKSKGFGFVCYSSPEEATKAVTEMNHRLVAGKPLYVVLAQRKDVRRSQLQQQ-IQA 421
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA 120
MR+QQ + GG + P FY P Q P P G+
Sbjct: 422 KNQMRLQQQ------AAAGGLPGQYMGNPGVFY-PGQ-------------PGFMPPGRGG 461
Query: 121 QGF-PNIPQFRSAPRASTGQTVIRGA----NMSARPITGQSTMGPRGGGPMQAPGPASVS 175
F N P Q RG NM P G +GG P Q P
Sbjct: 462 MPFGANPQMMMRPPMPPQNQFPPRGVPGGPNMYGAPPQGYQ----QGGFPPQGP------ 511
Query: 176 AAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQK 235
GG P R+ PQ Q G G V + +++ + A + Q K
Sbjct: 512 ----MRGG---QPPRSGQPGPQGQFRGAPRRKDGESRV----ADSISNALENAPEEQ-HK 559
Query: 236 QMLGERLFP--LIQRMYP---ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290
Q++GE L+P L ++ E AGKITGMLLE+ E+L +++ E L++++ +A+
Sbjct: 560 QLVGEALYPKVLAEKAIDGNAEFAGKITGMLLEMPIKEILEVIDDEEGLQAQINDAITAY 619
Query: 291 QAHQAKQ 297
+ Q
Sbjct: 620 NEYLNSQ 626
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 22/69 (31%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G S+GFGFV + S E A A+ +NG ++ K ++V K DR Q
Sbjct: 168 DEFGNSRGFGFVHYESAESAESAIQHVNGMLLNDKKVFVGPHVPKSDRMQSFEEQ-KNSF 226
Query: 62 ANMRMQQMG 70
N+ ++ +G
Sbjct: 227 TNVFIKNLG 235
Score = 34.7 bits (78), Expect = 0.86, Method: Compositional matrix adjust.
Identities = 16/56 (28%), Positives = 29/56 (51%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+++G+ GFGFV + + A KA+ ++ L+ A++K +R L QY
Sbjct: 261 NDEGKPTGFGFVDYKEHDVAVKAIDGLSETEFKGNKLFAGRAKKKYERADELRKQY 316
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 92.8 bits (229), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/78 (57%), Positives = 61/78 (78%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT+ L+AA PQ+QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE +E+L+
Sbjct: 633 LTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALR 692
Query: 281 SKVEEAVAVLQAHQAKQA 298
+KV+EA++V + ++
Sbjct: 693 AKVDEALSVYDEYMKNKS 710
Score = 57.4 bits (137), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+S+GFGFV FS+ E A AV EMN + + S+ LYV AQ+K +R+ L QY
Sbjct: 259 EGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQY 312
Score = 44.7 bits (104), Expect = 8e-04, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 164 DEFGVSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 223
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I + ++ +LF+
Sbjct: 224 NIYIKNIDPEVEDEEFRKLFE 244
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 92.4 bits (228), Expect = 4e-18, Method: Compositional matrix adjust.
Identities = 63/138 (45%), Positives = 80/138 (57%), Gaps = 19/138 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 356 TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 414
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG---PTQMTQIRPQPRWAAAPQMRP- 115
MR QQ + G G F+P + FYG P + P P+ QM P
Sbjct: 415 NQMRYQQATAAAAAAAAGMPGQFMPPM-----FYGVMPPRGVPFNGPNPQ-----QMNPM 464
Query: 116 SGQTAQGFPNIPQFRSAP 133
G G P PQFR+ P
Sbjct: 465 GGMPKNGMP--PQFRNGP 480
Score = 52.0 bits (123), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 29/71 (40%), Positives = 38/71 (53%), Gaps = 1/71 (1%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
DG+ KGFGFV + E+A KAV +N + + LYV AQ+K +R L QY R+
Sbjct: 255 DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLE 314
Query: 63 NMRMQQMGQLF 73
M Q LF
Sbjct: 315 KMAKYQGVNLF 325
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 27/80 (33%), Positives = 46/80 (57%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRKEDR-----KAHLA 54
E+G+SKGFGFV F A +A+ +NG ++ + +YVA L++++ D KAH
Sbjct: 160 DENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYT 219
Query: 55 SQYMQRI-ANMRMQQMGQLF 73
+ Y++ I + +Q +LF
Sbjct: 220 NLYVKNINSETTDEQFQELF 239
Score = 41.6 bits (96), Expect = 0.008, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE+L+ + + E AGKITGM+L++ E+ +LE +E + +EA A
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 290 LQAHQAKQ 297
++ + +Q
Sbjct: 563 YESFKKEQ 570
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 89.0 bits (219), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 57/73 (78%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT+ L AA P +QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE +++L+
Sbjct: 652 LTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALR 711
Query: 281 SKVEEAVAVLQAH 293
+KV+EA++V +
Sbjct: 712 AKVDEALSVYDEY 724
Score = 53.9 bits (128), Expect = 2e-06, Method: Compositional matrix adjust.
Identities = 24/54 (44%), Positives = 37/54 (68%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+S+GFGFV +S+ E A AV EM+ + + ++ LYV AQ+K +R+ L QY
Sbjct: 268 EGKSRGFGFVNYSTHESAQAAVDEMHDKEVKTQKLYVGRAQKKHEREEELRKQY 321
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 173 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFDEMKANFT 232
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I ++ ++ ++F+
Sbjct: 233 NIYIKNIDPDVTEEEFRKIFE 253
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 88.2 bits (217), Expect = 8e-17, Method: Compositional matrix adjust.
Identities = 42/67 (62%), Positives = 53/67 (79%), Gaps = 1/67 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 353 TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 411
Query: 62 ANMRMQQ 68
MR QQ
Sbjct: 412 NQMRFQQ 418
Score = 54.7 bits (130), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 28/68 (41%), Positives = 40/68 (58%), Gaps = 4/68 (5%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G +KGFGFV F + E+A K V E+N +PLYV AQ+K +R+ L QY
Sbjct: 252 EGENKGFGFVNFVNHEDAVKCVEELNNTEFKGQPLYVNRAQKKYERQQELKKQY----EA 307
Query: 64 MRMQQMGQ 71
RM++M +
Sbjct: 308 TRMEKMAK 315
Score = 45.8 bits (107), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 41/67 (61%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRK-----EDRKAHLA 54
E G+SKGFG+V F E A++A+ +NG ++ + +YV L++++ E+ KA+
Sbjct: 157 DETGKSKGFGYVHFEEDESASEAIDALNGMLLNGQEIYVGPHLSKKERESKFEEMKANFT 216
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 217 NVYIKNI 223
Score = 41.2 bits (95), Expect = 0.011, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 289
Q+Q+Q LGE L+ I + E AGKITGM+L++ E++ +LE++E + +EA A
Sbjct: 501 QKQRQALGEELYKRIFSRTNDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEASAA 560
Query: 290 LQAHQ 294
++ +
Sbjct: 561 YESFK 565
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 87.0 bits (214), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/73 (57%), Positives = 56/73 (76%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT +L AA P +QKQMLGE ++P IQ PELAGKITGMLLE+DNAELL +++ + +LK
Sbjct: 665 LTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLALVDDDAALK 724
Query: 281 SKVEEAVAVLQAH 293
+KV+EA+ V +
Sbjct: 725 AKVDEALTVYDEY 737
Score = 53.1 bits (126), Expect = 3e-06, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 35/56 (62%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+E G+S+GFGFV F+S + A AV +N + + LYV AQ+K +R+ L QY
Sbjct: 271 AESGKSRGFGFVNFTSHDNAAAAVEALNDKDFKGQKLYVGRAQKKHEREEELRKQY 326
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/81 (29%), Positives = 42/81 (51%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 177 DEFGNSKGYGFVHYETAEAAQNAIKHVNGMLLNDKKVFVGHHIAKKDRQSKFEEMKANFT 236
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I + ++ LF+
Sbjct: 237 NVYVKNIDQDTTEEEFRDLFE 257
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 41/64 (64%), Positives = 51/64 (79%), Gaps = 1/64 (1%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFS+P++ATKAVTEMN R++ KPLYVALAQRK+ RK+ L + R +
Sbjct: 422 GKSKGFGFVCFSNPDDATKAVTEMNQRMVDGKPLYVALAQRKDVRKSQLEASIQAR-NQL 480
Query: 65 RMQQ 68
RMQQ
Sbjct: 481 RMQQ 484
Score = 55.1 bits (131), Expect = 6e-07, Method: Compositional matrix adjust.
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV F++ E A +AV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 275 DQEGKSRGFGFVNFTTHEAAAQAVDELNGKDFRGQDLYVGRAQKKHEREEELRKSY 330
Score = 48.9 bits (115), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 45/80 (56%), Gaps = 8/80 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A++A+ +NG ++ K +YV K+DR KA+
Sbjct: 182 DEHGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFEEMKANFT 241
Query: 55 SQYMQRIAN-MRMQQMGQLF 73
+ Y++ I N + ++ +LF
Sbjct: 242 NVYVKNINNEVTDEEFRELF 261
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 86.3 bits (212), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
L S + A PQ+QKQ+LGE LFP IQ + P+LAGKITGMLLE+DNAEL+ +LE +L
Sbjct: 679 LQSQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALV 738
Query: 281 SKVEEAVAVLQAHQAKQ 297
+KV EA+AV + Q
Sbjct: 739 AKVNEAMAVYDEYVKSQ 755
Score = 55.1 bits (131), Expect = 7e-07, Method: Compositional matrix adjust.
Identities = 25/56 (44%), Positives = 36/56 (64%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+S+GFGFV F++ E A KAV E+NG+ + LYV AQ+K +R+ L Y
Sbjct: 280 DSEGKSRGFGFVNFTTHECAAKAVEELNGKEFRGQDLYVGRAQKKHEREEELRKSY 335
Score = 45.8 bits (107), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 22/68 (32%), Positives = 38/68 (55%), Gaps = 7/68 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A +A+ +N ++ K +YV K+DR KA+
Sbjct: 187 DENGNSKGYGFVHYETDEAAAQAIKHVNNMLLNEKKVYVGYHIPKKDRQSKFEEMKANFT 246
Query: 55 SQYMQRIA 62
+ Y++ I+
Sbjct: 247 NIYVKNIS 254
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 84.7 bits (208), Expect = 8e-16, Method: Compositional matrix adjust.
Identities = 36/55 (65%), Positives = 48/55 (87%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+GFGFV +S+PEEA +A++EMNG++IG KPLY+ALAQRKEDR+AHL + + Q
Sbjct: 369 GMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQ 423
Score = 50.8 bits (120), Expect = 1e-05, Method: Compositional matrix adjust.
Identities = 28/73 (38%), Positives = 38/73 (52%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+ G S+ FGFV F E A AV +MNG +G LYV AQ+K +R+ L ++ Q R
Sbjct: 263 DQSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQER 322
Query: 61 IANMRMQQMGQLF 73
I Q L+
Sbjct: 323 INRFEKSQGANLY 335
Score = 43.1 bits (100), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
M GRSKG+GFV F E A A+ ++NG ++ K ++V R+++R
Sbjct: 169 MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 84.3 bits (207), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 53/115 (46%), Positives = 66/115 (57%), Gaps = 9/115 (7%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G S+GFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRKE R+ LA Q R
Sbjct: 356 DETGNSRGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKEVRRNQLAQQIQAR- 414
Query: 62 ANMRMQQMGQLFQPGSTG--GYFVPTLPQPQRFYG--PTQMTQIRPQPRWAAAPQ 112
MR Q G G F+P P +YG P ++ P P+ A P+
Sbjct: 415 NQMRFQHANAAAAAAVAGLPGQFMP----PPMYYGGIPPRVPFQGPNPQMAGMPK 465
Score = 48.1 bits (113), Expect = 7e-05, Method: Compositional matrix adjust.
Identities = 22/70 (31%), Positives = 42/70 (60%), Gaps = 1/70 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+G S+GFGFV F + +A A+ ++G ++ + +YVAL K+DR++ L + +
Sbjct: 160 DENGVSRGFGFVHFENESDARDAIEAVDGMLMNDQEVYVALHVSKKDRQSKL-EEVKAKF 218
Query: 62 ANMRMQQMGQ 71
N+ ++ + Q
Sbjct: 219 TNVYVKNIDQ 228
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 23/54 (42%), Positives = 30/54 (55%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+ +GFGFV F A KAV E+N + LYV AQ+K +R L QY
Sbjct: 255 EGKLRGFGFVNFEDHAAAAKAVDELNELEFKGQKLYVGRAQKKYERLQELKKQY 308
Score = 36.6 bits (83), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 22/59 (37%), Positives = 38/59 (64%), Gaps = 8/59 (13%)
Query: 238 LGERLFPLIQRMY-----PELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291
LGE+L+ Q+++ E AGKITGM+L++ +++ +LE++E L+ +EA A Q
Sbjct: 508 LGEQLY---QKVFAKTQDDEAAGKITGMILDLPPQQVIQLLENDELLEQHFQEAHAAYQ 563
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 83.6 bits (205), Expect = 2e-15, Method: Compositional matrix adjust.
Identities = 39/70 (55%), Positives = 56/70 (80%)
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 287
A P +QKQ+LGE +FP IQ ++PELAGKITGMLLE+DN EL+ ++E++ +L+SKV+EA+
Sbjct: 674 ADNPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEAL 733
Query: 288 AVLQAHQAKQ 297
AV + +Q
Sbjct: 734 AVYDDYVRQQ 743
Score = 56.2 bits (134), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+S+GFGFV F+S E+A+KAV E+N + + LYV AQ+K +R+ L Y
Sbjct: 278 ETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSY 332
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 23/67 (34%), Positives = 39/67 (58%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E+G SKG+GFV + + E A++A+ +NG ++ K +YV K+DR KA+
Sbjct: 183 DENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQSKFDEMKANFT 242
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 243 NIYVKNI 249
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 54/122 (44%), Positives = 65/122 (53%), Gaps = 25/122 (20%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR--IA 62
G+SKGFGFVCFSSP+EA+KAVTEMN R++ KPLYVALAQRK+ R++ L + R I
Sbjct: 432 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQARNTIR 491
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQG 122
+ + QP Y QP FYGP Q I P GQ
Sbjct: 492 QQQAAAAAGMPQP-----YM-----QPAVFYGPGQQGFI-------------PGGQRGMA 528
Query: 123 FP 124
FP
Sbjct: 529 FP 530
Score = 58.9 bits (141), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 28/56 (50%), Positives = 38/56 (67%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV FS+ E A AV EMN + I S+ LYV AQ+K +R+ L QY
Sbjct: 269 DQEGKSRGFGFVNFSTHESAQAAVEEMNDKEIRSQKLYVGRAQKKHEREEELRKQY 324
Score = 44.3 bits (103), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 176 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 235
Query: 55 SQYMQRI 61
+ Y++ +
Sbjct: 236 NVYIKNL 242
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 82.8 bits (203), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 49/93 (52%), Positives = 61/93 (65%), Gaps = 3/93 (3%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
++G SKGFGFVCFSSPEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 368 DQEGNSKGFGFVCFSSPEEATKAMTEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 426
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYG 94
+R QQ Q + G +P PQ FYG
Sbjct: 427 NQIRFQQQQQQQAAAAAAG--MPGQYMPQMFYG 457
Score = 54.3 bits (129), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 28/69 (40%), Positives = 40/69 (57%), Gaps = 4/69 (5%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G+ KGFGFV F A KAV E+NG+ S+ LYV AQ+K +R L QY Q
Sbjct: 267 EGKPKGFGFVNFVDHNAAAKAVEELNGKEFKSQALYVGRAQKKYERAEELKKQYEQ---- 322
Query: 64 MRMQQMGQL 72
R++++ +
Sbjct: 323 YRLEKLAKF 331
Score = 47.4 bits (111), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHL 53
+ E+G S+GFGFV F +A A+ +NG ++ +YVA+ K+DR KA+
Sbjct: 171 LDENGNSRGFGFVHFKEESDAKDAIEAVNGMLMNGLEVYVAMHVPKKDRISKLEEAKANF 230
Query: 54 ASQYMQRI-ANMRMQQMGQLF 73
+ Y++ I ++ QLF
Sbjct: 231 TNIYVKNIDVETTDEEFEQLF 251
Score = 38.9 bits (89), Expect = 0.053, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 235 KQMLGERLFPLIQRMYPE--LAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292
+Q LGE+L+ + + AGKITGM+L++ +++ +L+++E + + +EA+A +
Sbjct: 524 RQALGEQLYKKVSAKIDDENAAGKITGMILDLPPQQVIQLLDNDEQFEQQFQEALAAYEN 583
Query: 293 HQAKQAA 299
+ +Q A
Sbjct: 584 FKKEQEA 590
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 82.4 bits (202), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 38/59 (64%), Positives = 48/59 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M+ G S+GFGFV +S+PEEA A+ EMNG++IG KPLYVALAQRKE+R+AHL S + Q
Sbjct: 375 MNSQGLSRGFGFVAYSNPEEALLAMKEMNGKMIGRKPLYVALAQRKEERQAHLQSLFTQ 433
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 31/73 (42%), Positives = 41/73 (56%), Gaps = 1/73 (1%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-R 60
+ G S+ FGFV F SPE A AV +MNG +G LYV AQ+K DR+ L ++ Q R
Sbjct: 273 DQSGNSRSFGFVNFVSPEAAAVAVEKMNGISLGEDVLYVGRAQKKSDREEELRRKFEQER 332
Query: 61 IANMRMQQMGQLF 73
I+ Q L+
Sbjct: 333 ISRFEKLQGSNLY 345
Score = 45.1 bits (105), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 20/49 (40%), Positives = 30/49 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
M GRSKG+GFV F E A A+ ++NG ++ K ++V R++DR
Sbjct: 179 MDVVGRSKGYGFVQFEKEETAQAAIDKLNGMLLNDKQVFVGHFVRRQDR 227
Score = 36.2 bits (82), Expect = 0.28, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 27/41 (65%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
RS G+ +V F++PE+A++A+ +N I +P+ + L+ R
Sbjct: 97 RSLGYAYVNFANPEDASRAMESLNYAPIRDRPIRIMLSNRD 137
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 82.0 bits (201), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/56 (67%), Positives = 45/56 (80%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
G+SKGFGFVCFS+P+EATKAVTEMN ++I KPLYVALAQRK+ RK L + R
Sbjct: 422 GKSKGFGFVCFSNPDEATKAVTEMNQKMIEGKPLYVALAQRKDVRKNQLEATIQAR 477
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 22/56 (39%), Positives = 31/56 (55%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+ G+S+GFGFV + E A AV +N + LYV AQ+K +R+ L QY
Sbjct: 263 DDQGKSRGFGFVNYIRHEAAAVAVDHLNDIEFKGQKLYVGRAQKKHEREEELRKQY 318
Score = 41.6 bits (96), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 43/81 (53%), Gaps = 8/81 (9%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K++R KA+
Sbjct: 170 DELGNSKGYGFVHYETAEAANNAIKHVNGMLLNEKKVFVGHHIPKKERMSKFEEMKANFT 229
Query: 55 SQYMQRIA-NMRMQQMGQLFQ 74
+ Y++ I ++ + +LF+
Sbjct: 230 NIYVKNIDLDVTDEDFRELFE 250
Score = 37.0 bits (84), Expect = 0.18, Method: Compositional matrix adjust.
Identities = 15/40 (37%), Positives = 25/40 (62%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
RS G+ +V ++S E+ KA+ E+N +I KP + +QR
Sbjct: 87 RSLGYAYVNYNSSEDGEKALEELNYTVIKGKPCRIMWSQR 126
>sp|P0CB38|PAB4L_HUMAN Polyadenylate-binding protein 4-like OS=Homo sapiens GN=PABPC4L
PE=2 SV=1
Length = 370
Score = 81.3 bits (199), Expect = 8e-15, Method: Compositional matrix adjust.
Identities = 35/45 (77%), Positives = 42/45 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+SKGFG +CFSSPE+ATKA+TEMNGRI+GSKPL +ALAQR
Sbjct: 325 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369
Score = 58.9 bits (141), Expect = 4e-08, Method: Compositional matrix adjust.
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++V AQ+K +R+A L + Q
Sbjct: 227 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 281
Score = 46.2 bits (108), Expect = 3e-04, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
MS+D SKG+ FV F + A +A+ EMNG+++ ++V + ++DR+A L S+
Sbjct: 130 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSK 185
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 79.7 bits (195), Expect = 2e-14, Method: Compositional matrix adjust.
Identities = 46/125 (36%), Positives = 61/125 (48%), Gaps = 17/125 (13%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E G+SKGFGFVCFS+PEEA AV +G++ KPLYVA+AQ+KEDRK L Q+ R+
Sbjct: 338 DEKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRV 397
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQM-RPSGQTA 120
R PG+ Y P T P + + P M + +
Sbjct: 398 -EARKSSSSASVNPGT---------------YAPLYYTNTHPGMVYQSYPLMWKSANMIG 441
Query: 121 QGFPN 125
+PN
Sbjct: 442 SSYPN 446
Score = 58.2 bits (139), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 46/64 (71%)
Query: 236 QMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295
Q+LGE L PL++++ P+LA KITGMLLE+D +ELL +L+ E L +V+EA VL++ +
Sbjct: 527 QLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSSKT 586
Query: 296 KQAA 299
A
Sbjct: 587 NLTA 590
Score = 49.7 bits (117), Expect = 2e-05, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
E+ +G+ FV F +PE+A +A +NG GSK LYV AQ+K +R+ L Q+ ++
Sbjct: 235 DENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKH 294
Query: 62 ANMRM 66
+M
Sbjct: 295 EEQKM 299
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
EDG+S+G+GFV F + A A+ +N I+ K +YV +K DR
Sbjct: 147 EDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR 193
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 77.8 bits (190), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 53/122 (43%), Positives = 75/122 (61%), Gaps = 16/122 (13%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G SKG GFV F++PEEAT+A+++++G++I SKPLYVA+AQRKEDR+ L +Q+ Q +
Sbjct: 354 NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQ-VRP 412
Query: 64 MRMQ-QMG---QLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQMRP 115
+ MQ +G ++ PG P + Q Q FYG I PQP + P MRP
Sbjct: 413 VAMQPSVGPRMPVYPPGG------PGIGQ-QMFYGQAPPAMIPPQPGYGYQQQLVPGMRP 465
Query: 116 SG 117
G
Sbjct: 466 GG 467
Score = 55.5 bits (132), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+SKGFGFV F + ++A +AV +NG K YV AQ+K +R+ L +Y Q +
Sbjct: 251 EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNL 308
Score = 45.1 bits (105), Expect = 7e-04, Method: Compositional matrix adjust.
Identities = 21/67 (31%), Positives = 40/67 (59%), Gaps = 5/67 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLAS 55
+ G+SKG+GFV +++ E A KA+ ++NG ++ K +YV R+++R K +
Sbjct: 157 VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTN 216
Query: 56 QYMQRIA 62
Y++ +A
Sbjct: 217 VYVKNLA 223
Score = 36.6 bits (83), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 15/41 (36%), Positives = 27/41 (65%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
RS G+G+V F++P++A +A+ E+N + KP+ V + R
Sbjct: 75 RSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHRD 115
>sp|P60050|PABP5_PONPY Polyadenylate-binding protein 5 OS=Pongo pygmaeus GN=PABPC5 PE=3
SV=1
Length = 382
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCE--------YGPTESVKV 230
>sp|P60049|PABP5_PANTR Polyadenylate-binding protein 5 OS=Pan troglodytes GN=PABPC5 PE=3
SV=1
Length = 382
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCE--------YGPTESVKV 230
>sp|P60048|PABP5_HYLLA Polyadenylate-binding protein 5 OS=Hylobates lar GN=PABPC5 PE=3
SV=1
Length = 382
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCE--------YGPTESVKV 230
>sp|Q96DU9|PABP5_HUMAN Polyadenylate-binding protein 5 OS=Homo sapiens GN=PABPC5 PE=2 SV=1
Length = 382
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCE--------YGPTESVKV 230
>sp|P60047|PABP5_GORGO Polyadenylate-binding protein 5 OS=Gorilla gorilla gorilla
GN=PABPC5 PE=3 SV=1
Length = 382
Score = 69.7 bits (169), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 33/44 (75%), Positives = 36/44 (81%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQ 377
Score = 47.8 bits (112), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 24/47 (51%), Positives = 33/47 (70%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLA 282
Score = 42.0 bits (97), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 24/101 (23%), Positives = 46/101 (45%), Gaps = 8/101 (7%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ +D SKG+ +V F S A +A+ MNG + ++ +YV + E+R A + ++
Sbjct: 138 VCDDNGSKGYAYVHFDSLAAANRAIWHMNGVRLNNRQVYVGRFKFPEERAAEVRTRDRAT 197
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQI 101
N+ ++ +G F YGPT+ ++
Sbjct: 198 FTNVFVKNIGDDIDDEKLKELFCE--------YGPTESVKV 230
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 69.3 bits (168), Expect = 3e-11, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 56/73 (76%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT+ L+A P +QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE E+L+
Sbjct: 651 LTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNNELLGLLEDEEALR 710
Query: 281 SKVEEAVAVLQAH 293
+KV+EA++V +
Sbjct: 711 AKVDEALSVYDEY 723
Score = 56.6 bits (135), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
++G+S+GFGFV FS+ + A AV EMN + I + LYV AQ+K +R+ L QY
Sbjct: 267 DQEGKSRGFGFVNFSTHDSAQAAVDEMNDKEIKGQKLYVGRAQKKHEREEELRKQY 322
Score = 45.4 bits (106), Expect = 5e-04, Method: Compositional matrix adjust.
Identities = 22/67 (32%), Positives = 36/67 (53%), Gaps = 7/67 (10%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLA 54
E G SKG+GFV + + E A A+ +NG ++ K ++V K+DR KA+
Sbjct: 174 DEFGNSKGYGFVHYETAEAANNAIKHVNGMLLNDKKVFVGHHISKKDRQSKFEEMKANFT 233
Query: 55 SQYMQRI 61
+ Y++ I
Sbjct: 234 NVYIKNI 240
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.374
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114,918,653
Number of Sequences: 539616
Number of extensions: 5093450
Number of successful extensions: 19193
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 349
Number of HSP's successfully gapped in prelim test: 342
Number of HSP's that attempted gapping in prelim test: 17740
Number of HSP's gapped (non-prelim): 1558
length of query: 303
length of database: 191,569,459
effective HSP length: 117
effective length of query: 186
effective length of database: 128,434,387
effective search space: 23888795982
effective search space used: 23888795982
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 61 (28.1 bits)