Query psy14476
Match_columns 303
No_of_seqs 350 out of 1462
Neff 6.0
Searched_HMMs 46136
Date Fri Aug 16 20:48:37 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14476.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14476hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 TIGR01628 PABP-1234 polyadenyl 100.0 2.1E-39 4.5E-44 328.0 22.9 243 1-291 319-562 (562)
2 smart00517 PolyA C-terminal do 100.0 5.5E-30 1.2E-34 189.5 5.5 64 230-293 1-64 (64)
3 PF00658 PABP: Poly-adenylate 99.9 1.7E-28 3.6E-33 186.5 3.3 72 219-290 1-72 (72)
4 PLN03134 glycine-rich RNA-bind 98.7 2E-08 4.3E-13 85.9 5.2 44 3-46 71-114 (144)
5 KOG0148|consensus 98.7 8.1E-09 1.7E-13 95.9 2.9 76 3-88 99-174 (321)
6 smart00361 RRM_1 RNA recogniti 98.6 5.1E-08 1.1E-12 72.9 5.3 37 5-41 34-70 (70)
7 TIGR01628 PABP-1234 polyadenyl 98.4 4.3E-07 9.3E-12 92.5 7.3 82 2-91 213-298 (562)
8 KOG0111|consensus 98.4 1.4E-07 3E-12 85.7 2.4 44 3-46 47-90 (298)
9 KOG0125|consensus 98.4 2.2E-07 4.9E-12 88.3 3.7 42 5-46 133-174 (376)
10 TIGR01661 ELAV_HUD_SF ELAV/HuD 98.4 4E-07 8.7E-12 86.7 4.8 45 3-47 40-84 (352)
11 PF13893 RRM_5: RNA recognitio 98.3 7.6E-07 1.7E-11 63.3 5.0 36 8-43 21-56 (56)
12 TIGR01659 sex-lethal sex-letha 98.3 8.4E-07 1.8E-11 86.1 4.6 43 3-45 144-186 (346)
13 PF00076 RRM_1: RNA recognitio 98.3 1.4E-06 3.1E-11 63.0 4.7 37 3-39 34-70 (70)
14 KOG0108|consensus 98.2 1E-06 2.2E-11 87.8 4.9 50 3-52 55-104 (435)
15 TIGR01648 hnRNP-R-Q heterogene 98.2 1.7E-06 3.6E-11 89.1 5.6 82 6-91 267-354 (578)
16 KOG0123|consensus 98.2 1.6E-06 3.6E-11 84.8 4.3 73 223-295 279-351 (369)
17 KOG0145|consensus 98.1 1.8E-06 4E-11 80.2 3.9 45 4-48 79-123 (360)
18 KOG4207|consensus 98.1 1.6E-06 3.4E-11 78.3 3.2 41 4-44 51-91 (256)
19 KOG0144|consensus 98.1 3.2E-06 6.9E-11 83.1 5.5 54 1-54 158-214 (510)
20 smart00360 RRM RNA recognition 98.1 5.1E-06 1.1E-10 58.6 4.8 38 4-41 34-71 (71)
21 TIGR01645 half-pint poly-U bin 98.1 3.5E-06 7.7E-11 87.1 5.3 45 3-47 241-285 (612)
22 KOG0123|consensus 98.1 1.4E-06 3.1E-11 85.2 2.3 59 2-60 305-363 (369)
23 KOG0117|consensus 98.1 3.7E-06 8.1E-11 82.8 4.6 44 1-44 117-162 (506)
24 KOG0126|consensus 98.0 8.7E-07 1.9E-11 78.5 -0.3 43 3-45 72-114 (219)
25 KOG0226|consensus 98.0 4.6E-06 9.9E-11 77.2 4.2 54 3-56 227-280 (290)
26 KOG4208|consensus 98.0 4.3E-06 9.2E-11 75.2 3.7 44 3-46 87-130 (214)
27 TIGR01645 half-pint poly-U bin 98.0 5.8E-06 1.3E-10 85.6 4.8 43 3-45 144-186 (612)
28 TIGR01659 sex-lethal sex-letha 98.0 6.6E-06 1.4E-10 79.9 4.3 44 3-46 230-275 (346)
29 PF14259 RRM_6: RNA recognitio 97.9 1.4E-05 3E-10 58.7 4.8 36 4-39 35-70 (70)
30 TIGR01622 SF-CC1 splicing fact 97.9 1.3E-05 2.7E-10 79.4 5.2 44 3-46 223-266 (457)
31 TIGR01648 hnRNP-R-Q heterogene 97.9 1.5E-05 3.3E-10 82.1 5.7 44 1-44 92-136 (578)
32 smart00362 RRM_2 RNA recogniti 97.9 2.1E-05 4.5E-10 55.7 4.8 37 5-41 36-72 (72)
33 KOG0149|consensus 97.9 8.2E-06 1.8E-10 74.7 3.0 41 3-44 49-89 (247)
34 COG0724 RNA-binding proteins ( 97.9 1.8E-05 3.9E-10 69.4 5.0 43 3-45 152-194 (306)
35 TIGR01642 U2AF_lg U2 snRNP aux 97.9 1.6E-05 3.6E-10 79.6 5.3 43 3-45 332-374 (509)
36 KOG0107|consensus 97.8 1.1E-05 2.3E-10 71.2 2.8 41 6-46 45-85 (195)
37 KOG0113|consensus 97.8 2.2E-05 4.9E-10 74.1 4.7 43 3-45 138-180 (335)
38 KOG0147|consensus 97.8 2.2E-05 4.9E-10 79.0 4.1 44 3-46 315-358 (549)
39 cd00590 RRM RRM (RNA recogniti 97.7 6.6E-05 1.4E-09 53.4 5.3 39 4-42 36-74 (74)
40 KOG0130|consensus 97.7 2E-05 4.3E-10 67.1 2.8 44 3-46 109-152 (170)
41 KOG0127|consensus 97.7 3.5E-05 7.5E-10 77.8 4.6 46 3-48 153-198 (678)
42 KOG0131|consensus 97.7 2.4E-05 5.1E-10 69.4 2.6 41 4-44 47-87 (203)
43 KOG4212|consensus 97.7 3.6E-05 7.7E-10 76.0 4.0 44 1-44 79-122 (608)
44 KOG0131|consensus 97.7 3.8E-05 8.2E-10 68.1 3.6 48 3-50 134-181 (203)
45 KOG0124|consensus 97.6 3.4E-05 7.4E-10 74.7 3.3 42 4-45 151-192 (544)
46 PLN03213 repressor of silencin 97.6 8.9E-05 1.9E-09 74.2 5.9 43 3-47 45-89 (759)
47 TIGR01622 SF-CC1 splicing fact 97.6 9.2E-05 2E-09 73.3 5.1 43 3-46 126-168 (457)
48 KOG0146|consensus 97.5 0.00017 3.6E-09 67.6 6.4 57 2-58 54-113 (371)
49 TIGR01661 ELAV_HUD_SF ELAV/HuD 97.5 0.00012 2.7E-09 69.6 5.1 44 4-47 127-172 (352)
50 PLN03120 nucleic acid binding 97.4 0.00017 3.7E-09 67.4 5.0 39 6-45 41-79 (260)
51 KOG0943|consensus 97.4 8E-05 1.7E-09 80.6 2.4 63 234-296 2607-2671(3015)
52 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.4 0.00019 4.2E-09 72.3 5.0 40 7-46 312-351 (481)
53 TIGR01649 hnRNP-L_PTB hnRNP-L/ 97.2 0.00036 7.7E-09 70.4 4.9 42 6-47 36-79 (481)
54 KOG0148|consensus 97.2 0.00034 7.3E-09 65.6 3.9 42 6-47 198-239 (321)
55 KOG0110|consensus 97.2 0.00038 8.2E-09 72.2 4.3 45 1-45 2-46 (725)
56 KOG0117|consensus 97.1 0.00047 1E-08 68.3 4.6 47 6-52 291-337 (506)
57 KOG0121|consensus 97.1 0.00045 9.8E-09 58.4 3.8 42 5-46 75-116 (153)
58 TIGR01642 U2AF_lg U2 snRNP aux 97.1 0.00046 9.9E-09 69.2 4.0 39 5-44 220-258 (509)
59 KOG0110|consensus 97.1 0.00053 1.2E-08 71.1 4.5 40 7-46 559-598 (725)
60 KOG0144|consensus 96.9 0.00084 1.8E-08 66.4 3.8 55 4-58 72-129 (510)
61 KOG0127|consensus 96.9 0.00059 1.3E-08 69.2 2.8 45 4-48 43-87 (678)
62 KOG4206|consensus 96.8 0.00092 2E-08 61.0 3.4 50 3-52 47-96 (221)
63 KOG0145|consensus 96.8 0.0014 2.9E-08 61.4 3.9 43 4-46 165-209 (360)
64 KOG0114|consensus 96.7 0.0052 1.1E-07 50.4 6.2 44 5-48 54-97 (124)
65 PLN03121 nucleic acid binding 96.6 0.0025 5.5E-08 59.0 4.8 40 4-44 40-79 (243)
66 KOG0105|consensus 96.0 0.0035 7.6E-08 56.1 2.1 39 8-46 45-83 (241)
67 KOG0415|consensus 96.0 0.0053 1.1E-07 59.7 3.3 45 3-47 276-320 (479)
68 PF04059 RRM_2: RNA recognitio 95.7 0.018 3.9E-07 46.3 4.6 41 4-44 41-85 (97)
69 KOG0109|consensus 95.5 0.0083 1.8E-07 57.0 2.4 41 6-46 110-150 (346)
70 KOG4205|consensus 95.2 0.008 1.7E-07 57.8 1.3 46 3-49 134-179 (311)
71 KOG4209|consensus 95.2 0.019 4E-07 53.1 3.6 40 4-44 139-178 (231)
72 PF11608 Limkain-b1: Limkain b 95.1 0.031 6.7E-07 44.1 4.1 40 7-46 38-77 (90)
73 KOG2314|consensus 94.9 0.03 6.4E-07 57.4 4.4 41 2-42 99-140 (698)
74 KOG4661|consensus 94.8 0.021 4.5E-07 58.6 3.1 39 7-45 446-484 (940)
75 KOG0106|consensus 94.8 0.012 2.6E-07 53.8 1.2 39 8-46 35-73 (216)
76 KOG4205|consensus 94.7 0.0084 1.8E-07 57.7 0.0 45 4-49 44-88 (311)
77 KOG0132|consensus 94.7 0.027 5.9E-07 59.4 3.6 45 6-50 455-499 (894)
78 KOG0533|consensus 94.5 0.045 9.8E-07 51.0 4.2 45 1-45 117-161 (243)
79 KOG0124|consensus 94.0 0.035 7.6E-07 54.3 2.6 43 4-46 248-290 (544)
80 KOG0109|consensus 94.0 0.032 6.9E-07 53.1 2.2 41 6-46 34-74 (346)
81 KOG1457|consensus 94.0 0.062 1.3E-06 49.6 4.0 40 8-47 77-119 (284)
82 KOG0106|consensus 92.4 0.06 1.3E-06 49.3 1.3 38 7-44 132-169 (216)
83 KOG1548|consensus 91.4 0.18 4E-06 49.0 3.4 44 1-44 176-219 (382)
84 KOG1995|consensus 91.4 0.13 2.7E-06 50.1 2.3 46 3-48 111-156 (351)
85 KOG0120|consensus 91.3 0.093 2E-06 53.5 1.4 44 3-46 326-369 (500)
86 KOG4454|consensus 89.4 0.23 4.9E-06 45.8 2.0 43 2-45 44-86 (267)
87 KOG0153|consensus 89.3 0.35 7.6E-06 47.1 3.4 38 8-45 264-302 (377)
88 KOG4211|consensus 88.8 0.4 8.7E-06 48.5 3.5 50 1-51 138-187 (510)
89 KOG0147|consensus 88.6 0.46 9.9E-06 48.7 3.8 39 6-44 488-526 (549)
90 COG5175 MOT2 Transcriptional r 86.9 0.62 1.3E-05 45.4 3.4 35 12-46 169-203 (480)
91 KOG1548|consensus 86.5 1.1 2.3E-05 43.8 4.8 38 6-43 312-349 (382)
92 KOG0116|consensus 86.4 0.51 1.1E-05 47.3 2.7 37 5-42 327-363 (419)
93 KOG2202|consensus 86.4 0.44 9.5E-06 44.6 2.0 40 7-46 109-148 (260)
94 KOG4210|consensus 83.6 0.37 8E-06 45.9 0.2 46 2-48 221-266 (285)
95 KOG4849|consensus 82.8 41 0.00088 33.4 13.6 41 3-43 119-159 (498)
96 KOG4211|consensus 81.5 1.3 2.8E-05 45.0 3.1 41 3-44 44-84 (510)
97 PF03880 DbpA: DbpA RNA bindin 80.8 1.3 2.9E-05 33.3 2.3 34 9-43 41-74 (74)
98 KOG0151|consensus 79.0 1.6 3.4E-05 46.3 2.9 40 5-44 216-255 (877)
99 KOG4660|consensus 75.6 1.7 3.6E-05 44.7 1.9 37 3-39 107-143 (549)
100 PF08952 DUF1866: Domain of un 73.7 4 8.8E-05 35.3 3.6 37 9-46 71-107 (146)
101 KOG1456|consensus 72.9 3.5 7.7E-05 40.8 3.3 37 10-46 161-199 (494)
102 KOG4212|consensus 71.0 5.2 0.00011 40.5 4.0 41 2-42 250-290 (608)
103 PF11767 SET_assoc: Histone ly 68.1 8.1 0.00018 28.9 3.7 29 12-40 37-65 (66)
104 KOG2193|consensus 65.8 5.1 0.00011 40.3 2.8 45 8-52 37-82 (584)
105 KOG4660|consensus 63.6 12 0.00026 38.6 5.1 39 6-44 429-471 (549)
106 PF04847 Calcipressin: Calcipr 62.5 8.5 0.00018 34.4 3.4 39 7-45 30-70 (184)
107 KOG1190|consensus 60.9 11 0.00023 37.9 4.0 38 8-45 335-372 (492)
108 KOG2416|consensus 58.1 11 0.00024 39.5 3.7 42 6-47 479-523 (718)
109 PF05172 Nup35_RRM: Nup53/35/4 56.8 15 0.00033 29.6 3.7 36 8-44 54-90 (100)
110 KOG2068|consensus 53.3 4.6 0.0001 39.2 0.1 38 11-48 128-165 (327)
111 PF08777 RRM_3: RNA binding mo 49.8 16 0.00034 29.5 2.7 39 10-48 39-82 (105)
112 KOG1456|consensus 46.4 25 0.00055 35.0 4.0 37 8-44 325-361 (494)
113 KOG0128|consensus 43.3 9.9 0.00021 41.2 0.7 38 4-41 705-742 (881)
114 KOG1365|consensus 42.1 37 0.00081 34.0 4.4 42 3-44 319-360 (508)
115 KOG4307|consensus 36.3 42 0.0009 36.1 3.9 40 8-48 40-79 (944)
116 PF02714 DUF221: Domain of unk 34.7 35 0.00076 32.2 3.0 36 11-48 1-36 (325)
117 KOG1365|consensus 34.5 22 0.00048 35.6 1.5 38 3-41 201-238 (508)
118 KOG4019|consensus 34.4 42 0.00091 30.3 3.1 40 6-45 49-89 (193)
119 PF14605 Nup35_RRM_2: Nup53/35 31.5 39 0.00085 23.8 2.1 19 7-25 35-53 (53)
120 KOG4285|consensus 27.0 78 0.0017 30.8 3.8 38 10-48 234-272 (350)
121 PF07647 SAM_2: SAM domain (St 26.1 1.6E+02 0.0035 20.7 4.6 38 254-291 27-66 (66)
122 PF11897 DUF3417: Protein of u 25.2 1.1E+02 0.0025 25.2 4.1 42 254-296 48-89 (118)
123 KOG3152|consensus 23.8 19 0.00042 34.0 -0.9 27 11-37 131-157 (278)
124 KOG1229|consensus 23.7 65 0.0014 33.1 2.7 40 255-294 330-374 (775)
125 PF07235 DUF1427: Protein of u 23.6 37 0.00081 27.0 0.8 29 235-263 37-76 (90)
126 KOG0077|consensus 22.0 42 0.00092 30.1 0.9 31 235-277 11-44 (193)
127 KOG2318|consensus 21.2 1E+02 0.0022 32.5 3.6 32 10-41 270-301 (650)
128 PF08206 OB_RNB: Ribonuclease 20.7 65 0.0014 22.9 1.6 12 6-17 6-17 (58)
129 KOG4307|consensus 20.5 75 0.0016 34.3 2.5 43 3-45 471-513 (944)
130 KOG1924|consensus 20.4 6E+02 0.013 28.2 9.1 82 84-205 525-608 (1102)
131 PTZ00096 40S ribosomal protein 20.4 1.1E+02 0.0023 26.5 3.1 33 255-287 19-64 (143)
132 KOG4715|consensus 20.1 82 0.0018 30.8 2.5 52 240-291 77-133 (410)
133 PF03532 OMS28_porin: OMS28 po 20.0 1.2E+02 0.0026 27.2 3.4 57 230-292 140-209 (253)
No 1
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=100.00 E-value=2.1e-39 Score=327.96 Aligned_cols=243 Identities=45% Similarity=0.683 Sum_probs=144.1
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCC
Q psy14476 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRMQQMGQLFQPGSTGG 80 (303)
Q Consensus 1 ~d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~~~~~~~q~~~~~r~~~~~~~~~~~~~~~ 80 (303)
+|.+|+|||||||+|++.++|.+|+++|||+.|+||+|+|.+|.++++|...+..+|.++....+ ...... +. .+
T Consensus 319 ~d~~g~~~g~gfV~f~~~~~A~~A~~~~~g~~~~gk~l~V~~a~~k~~~~~~~~~~~~q~~~~~~--~~~~~~-p~--~~ 393 (562)
T TIGR01628 319 LDEKGVSRGFGFVCFSNPEEANRAVTEMHGRMLGGKPLYVALAQRKEQRRAHLQDQFMQLQPRMR--QLPMGS-PM--GG 393 (562)
T ss_pred ECCCCCcCCeEEEEeCCHHHHHHHHHHhcCCeeCCceeEEEeccCcHHHHHHHHHHHHHhhhhcc--CCCCCC-CC--CC
Confidence 36789999999999999999999999999999999999999999999999999999877432211 111000 00 01
Q ss_pred CCCCCCCCCCcccCCCCCCCCCCCC-cCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCCCCC
Q psy14476 81 YFVPTLPQPQRFYGPTQMTQIRPQP-RWAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMG 159 (303)
Q Consensus 81 ~f~~~lp~~~~~~~~~~~~~~rp~~-~~~~~~~~~p~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ 159 (303)
.|. .+.|++++..+..++.| .|...+.+ +.+..++ ++..+. +.. .++ ++
T Consensus 394 ~~~-----~p~~~~~~~~~~~~~~p~~~~~~~~~--------~~~~~~~---~~~~p~---~~~-------~~~-~~--- 443 (562)
T TIGR01628 394 AMG-----QPPYYGQGPQQQFNGQPLGWPRMSMM--------PTPMGPG---GPLRPN---GLA-------PMN-AV--- 443 (562)
T ss_pred ccc-----CCCccCCCCcccCCCCCCCCCCCCCC--------CCCCCCC---CCCCCC---CCC-------CCC-cC---
Confidence 110 11233322222222111 22210100 0000000 000000 000 000 00
Q ss_pred CCCCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCccccCCCCCccccccccccCCCCccchhHhhhcChHHHHHhhh
Q psy14476 160 PRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLG 239 (303)
Q Consensus 160 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~~~~~ltas~l~~~~~~~qk~~lG 239 (303)
+.+++........++.+.+ .|+...++.+.++. + +. ++...+..+++++++++|++++|++||++||
T Consensus 444 ------~~~~~~~~~~~~~~~~~~~-~~~p~~~~~~~~~~---~-~~--~~~~~~~~~~~~~~~~~la~~~p~~q~~~lg 510 (562)
T TIGR01628 444 ------RAPSRNAQNAAQKPPMQPV-MYPPNYQSLPLSQD---L-PQ--PQSTASQGGQNKKLAQVLASATPQMQKQVLG 510 (562)
T ss_pred ------CCCCcccccccccccCCCc-CCCccccCCCCCcc---c-cc--ccCCccccccchhHHHHHhhCCHHHHHHHHH
Confidence 0000000000000000111 22100000000000 0 10 1112333567789999999999999999999
Q ss_pred ccchhhhhhhCCCCCCCchhhcccCChHHHHHhhCChHHHHHHHHHHHHHHH
Q psy14476 240 ERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291 (303)
Q Consensus 240 e~ly~~v~~~~p~~A~KITGMlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~ 291 (303)
|+|||+|++++|++|+||||||||||++||||||||+|+|++||+||++||+
T Consensus 511 ~~~~~~~~~~~~~~~~~~tgm~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 562 (562)
T TIGR01628 511 ERLFPLVEAIEPALAAKITGMLLEMDNSELLHLLESPELLKSKVDEALEVLK 562 (562)
T ss_pred HHhHHHHHhhChhhcCcceEEEecCCHHHHHHHhcCHHHHHHHHHHHHHHhC
Confidence 9999999999999999999999999999999999999999999999999994
No 2
>smart00517 PolyA C-terminal domain of Poly(A)-binding protein. Present also in Drosophila hyperplastics discs protein. Involved in homodimerisation (either directly or indirectly)
Probab=99.96 E-value=5.5e-30 Score=189.48 Aligned_cols=64 Identities=67% Similarity=0.994 Sum_probs=62.2
Q ss_pred ChHHHHHhhhccchhhhhhhCCCCCCCchhhcccCChHHHHHhhCChHHHHHHHHHHHHHHHHH
Q psy14476 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293 (303)
Q Consensus 230 ~~~~qk~~lGe~ly~~v~~~~p~~A~KITGMlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~ 293 (303)
+|++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|
T Consensus 1 ~p~~qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~ell~lle~~~~L~~kv~EA~~vl~~~ 64 (64)
T smart00517 1 PPQEQKQALGERLYPKVQALEPELAGKITGMLLEMDNSELLHLLESPELLRSKVDEALEVLKSH 64 (64)
T ss_pred CHHHHHHHHhHHHhHHHHhhCcccCCcCeeeeeCCCHHHHHHHhcCHHHHHHHHHHHHHHHHhC
Confidence 5889999999999999999999999999999999999999999999999999999999999864
No 3
>PF00658 PABP: Poly-adenylate binding protein, unique domain; InterPro: IPR002004 The polyadenylate-binding protein (PABP) has a conserved C-terminal domain (PABC), which is also found in the hyperplastic discs protein (HYD) family of ubiquitin ligases that contain HECT domains (IPR000569 from INTERPRO) []. PABP recognises the 3' mRNA poly(A) tail and plays an essential role in eukaryotic translation initiation and mRNA stabilisation/degradation. PABC domains of PABP are peptide-binding domains that mediate PABP homo-oligomerisation and protein-protein interactions. In mammals, the PABC domain of PABP functions to recruit several different translation factors to the mRNA poly(A) tail [].; GO: 0003723 RNA binding; PDB: 3KUR_E 1JH4_A 2RQH_B 3KUI_A 3KUS_A 3KUJ_A 3KTR_A 2X04_A 3PTH_A 1JGN_A ....
Probab=99.94 E-value=1.7e-28 Score=186.51 Aligned_cols=72 Identities=67% Similarity=1.054 Sum_probs=70.1
Q ss_pred CccchhHhhhcChHHHHHhhhccchhhhhhhCCCCCCCchhhcccCChHHHHHhhCChHHHHHHHHHHHHHH
Q psy14476 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 290 (303)
Q Consensus 219 ~~ltas~l~~~~~~~qk~~lGe~ly~~v~~~~p~~A~KITGMlLe~~~~ell~ll~~~~~L~~kv~eA~~vl 290 (303)
+++|++.|+++++++||++|||+||++|..++|++|+||||||||||++||++||+|++.|++||+||++||
T Consensus 1 ~~~~~~~la~~~~~~qk~~LGe~Ly~~V~~~~p~~A~KITGMLLe~~~~ell~ll~~~~~L~~kv~eA~~vL 72 (72)
T PF00658_consen 1 EPLTASALASASPEQQKQILGERLYPLVQAIYPELAGKITGMLLEMDNSELLHLLEDPELLREKVQEAIEVL 72 (72)
T ss_dssp SSTSHHHHHTSCHHHHHHHHHHHHHHHHHHHTHHHHHHHHHHHTTSCHHHHHHHHHTHHHHHHHHHHHHHHH
T ss_pred CcchHHHHhcCCHHHHHHHHhccccHHHHHhCcchhHHHHHHHhcCCHHHHHHHhCCHHHHHHHHHHHHHhC
Confidence 467899999999999999999999999999999999999999999999999999999999999999999997
No 4
>PLN03134 glycine-rich RNA-binding protein 4; Provisional
Probab=98.70 E-value=2e-08 Score=85.94 Aligned_cols=44 Identities=41% Similarity=0.730 Sum_probs=41.5
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.||++||||||+|++.++|++||+.||+..|+|+.|+|+++..+
T Consensus 71 ~tg~~kGfaFV~F~~~e~A~~Al~~lng~~i~Gr~l~V~~a~~~ 114 (144)
T PLN03134 71 ETGRSRGFGFVNFNDEGAATAAISEMDGKELNGRHIRVNPANDR 114 (144)
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEeCCcC
Confidence 47999999999999999999999999999999999999998754
No 5
>KOG0148|consensus
Probab=98.69 E-value=8.1e-09 Score=95.91 Aligned_cols=76 Identities=26% Similarity=0.484 Sum_probs=58.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCC
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRMQQMGQLFQPGSTGGYF 82 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~~~~~~~q~~~~~r~~~~~~~~~~~~~~~~f 82 (303)
.|+||||||||.|...++|++||..|||..|++|.|+-+||.+|..+.......|.+- .+..++- ..+.|
T Consensus 99 ~T~KsKGYgFVSf~~k~dAEnAI~~MnGqWlG~R~IRTNWATRKp~e~n~~~ltfdeV---------~NQssp~-NtsVY 168 (321)
T KOG0148|consen 99 NTGKSKGYGFVSFPNKEDAENAIQQMNGQWLGRRTIRTNWATRKPSEMNGKPLTFDEV---------YNQSSPD-NTSVY 168 (321)
T ss_pred cCCcccceeEEeccchHHHHHHHHHhCCeeeccceeeccccccCccccCCCCccHHHH---------hccCCCC-CceEE
Confidence 3899999999999999999999999999999999999999999984443333333322 2222222 33678
Q ss_pred CCCCCC
Q psy14476 83 VPTLPQ 88 (303)
Q Consensus 83 ~~~lp~ 88 (303)
+++++.
T Consensus 169 ~G~I~~ 174 (321)
T KOG0148|consen 169 VGNIAS 174 (321)
T ss_pred eCCcCc
Confidence 888775
No 6
>smart00361 RRM_1 RNA recognition motif.
Probab=98.63 E-value=5.1e-08 Score=72.91 Aligned_cols=37 Identities=22% Similarity=0.547 Sum_probs=35.4
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeee
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA 41 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~ 41 (303)
|++||||||.|.+.++|.+|++.|||+.++||.|.+.
T Consensus 34 ~~~rG~~fV~f~~~~dA~~A~~~l~g~~~~gr~l~~~ 70 (70)
T smart00361 34 NHKRGNVYITFERSEDAARAIVDLNGRYFDGRTVKAE 70 (70)
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEeC
Confidence 8999999999999999999999999999999999873
No 7
>TIGR01628 PABP-1234 polyadenylate binding protein, human types 1, 2, 3, 4 family. There are four paralogs in Homo sapiens which are expressed in testis, platelets, broadly expressed, or of unknown tissue range.
Probab=98.42 E-value=4.3e-07 Score=92.55 Aligned_cols=82 Identities=39% Similarity=0.590 Sum_probs=65.9
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceec----ccceeeecccchHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCC
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIG----SKPLYVALAQRKEDRKAHLASQYMQRIANMRMQQMGQLFQPGS 77 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~----GR~L~V~~A~~k~~r~~~~~~~~~q~~~~~r~~~~~~~~~~~~ 77 (303)
|.+|++||||||+|.+.++|.+|++.|||+.|. |+.|+|.++..+.++...++..+.+.... +. ....
T Consensus 213 ~~~g~~~G~afV~F~~~e~A~~Av~~l~g~~i~~~~~g~~l~v~~a~~k~er~~~~~~~~~~~~~~-~~----~~~~--- 284 (562)
T TIGR01628 213 DGSGRSRGFAFVNFEKHEDAAKAVEEMNGKKIGLAKEGKKLYVGRAQKRAEREAELRRKFEELQQE-RK----MKAQ--- 284 (562)
T ss_pred CCCCCcccEEEEEECCHHHHHHHHHHhCCcEecccccceeeEeecccChhhhHHHHHhhHHhhhhh-hh----cccC---
Confidence 678999999999999999999999999999999 99999999999999988888777654431 11 1111
Q ss_pred CCCCCCCCCCCCCc
Q psy14476 78 TGGYFVPTLPQPQR 91 (303)
Q Consensus 78 ~~~~f~~~lp~~~~ 91 (303)
...+||.||+....
T Consensus 285 ~~~l~V~nl~~~~~ 298 (562)
T TIGR01628 285 GVNLYVKNLDDTVT 298 (562)
T ss_pred CCEEEEeCCCCccC
Confidence 22689999987554
No 8
>KOG0111|consensus
Probab=98.39 E-value=1.4e-07 Score=85.68 Aligned_cols=44 Identities=34% Similarity=0.579 Sum_probs=42.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
+++|+||||||+|+..|+|..||..||+.+|.||.|+|++|.+.
T Consensus 47 esqkHRgFgFVefe~aEDAaaAiDNMnesEL~GrtirVN~AkP~ 90 (298)
T KOG0111|consen 47 ESQKHRGFGFVEFEEAEDAAAAIDNMNESELFGRTIRVNLAKPE 90 (298)
T ss_pred hcccccceeEEEeeccchhHHHhhcCchhhhcceeEEEeecCCc
Confidence 58999999999999999999999999999999999999999864
No 9
>KOG0125|consensus
Probab=98.38 E-value=2.2e-07 Score=88.32 Aligned_cols=42 Identities=33% Similarity=0.629 Sum_probs=39.4
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.-|||||||+|++++||++|-++|||..|.||+|.|+.|..+
T Consensus 133 RGSKGFGFVTmen~~dadRARa~LHgt~VEGRkIEVn~ATar 174 (376)
T KOG0125|consen 133 RGSKGFGFVTMENPADADRARAELHGTVVEGRKIEVNNATAR 174 (376)
T ss_pred CCCCccceEEecChhhHHHHHHHhhcceeeceEEEEeccchh
Confidence 358999999999999999999999999999999999999865
No 10
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=98.35 E-value=4e-07 Score=86.69 Aligned_cols=45 Identities=38% Similarity=0.638 Sum_probs=42.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|+|||||||+|.+.++|++||+.|||..|.|++|+|.++.++.
T Consensus 40 ~~g~s~g~afV~f~~~~~A~~Ai~~l~g~~l~g~~i~v~~a~~~~ 84 (352)
T TIGR01661 40 VTGQSLGYGFVNYVRPEDAEKAVNSLNGLRLQNKTIKVSYARPSS 84 (352)
T ss_pred CCCccceEEEEEECcHHHHHHHHhhcccEEECCeeEEEEeecccc
Confidence 479999999999999999999999999999999999999987653
No 11
>PF13893 RRM_5: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); PDB: 2PE8_A 2PEH_A 2D9O_A 1A9N_D 2DIT_A 3S6E_A 2LQ5_A 1SJQ_A 2AD9_A 1X4D_A ....
Probab=98.35 E-value=7.6e-07 Score=63.25 Aligned_cols=36 Identities=47% Similarity=0.820 Sum_probs=34.8
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeecc
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A 43 (303)
+|++||+|.+.++|++|++.|||..++|++|+|.||
T Consensus 21 ~~~a~V~f~~~~~A~~a~~~l~~~~~~g~~l~V~~a 56 (56)
T PF13893_consen 21 RGFAFVEFASVEDAQKAIEQLNGRQFNGRPLKVSYA 56 (56)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTSEETTEEEEEEEE
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEC
Confidence 599999999999999999999999999999999986
No 12
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=98.25 E-value=8.4e-07 Score=86.14 Aligned_cols=43 Identities=33% Similarity=0.553 Sum_probs=40.9
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
.+|+|||||||+|.++++|++||++||+..|.+++|+|.++.+
T Consensus 144 ~tg~srGyaFVeF~~~e~A~~Ai~~LnG~~l~gr~i~V~~a~p 186 (346)
T TIGR01659 144 KTGYSFGYAFVDFGSEADSQRAIKNLNGITVRNKRLKVSYARP 186 (346)
T ss_pred CCCccCcEEEEEEccHHHHHHHHHHcCCCccCCceeeeecccc
Confidence 4799999999999999999999999999999999999999865
No 13
>PF00076 RRM_1: RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain); InterPro: IPR000504 Many eukaryotic proteins containing one or more copies of a putative RNA-binding domain of about 90 amino acids are known to bind single-stranded RNAs [, , ]. The largest group of single strand RNA-binding proteins is the eukaryotic RNA recognition motif (RRM) family that contains an eight amino acid RNP-1 consensus sequence [, ]. RRM proteins have a variety of RNA binding preferences and functions, and include heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing (SR, U2AF, Sxl), protein components of small nuclear ribonucleoproteins (U1 and U2 snRNPs), and proteins that regulate RNA stability and translation (PABP, La, Hu) [, , ]. The RRM in heterodimeric splicing factor U2 snRNP auxiliary factor (U2AF) appears to have two RRM-like domains with specialised features for protein recognition []. The motif also appears in a few single stranded DNA binding proteins. The typical RRM consists of four anti-parallel beta-strands and two alpha-helices arranged in a beta-alpha-beta-beta-alpha-beta fold with side chains that stack with RNA bases. Specificity of RNA binding is determined by multiple contacts with surrounding amino acids. A third helix is present during RNA binding in some cases []. The RRM is reviewed in a number of publications [, , ].; GO: 0003676 nucleic acid binding; PDB: 2RNE_A 2DGO_A 2DO4_A 1YTY_B 2VOO_B 2VOP_A 2VON_B 1ZH5_B 2VOD_A 1S79_A ....
Probab=98.25 E-value=1.4e-06 Score=63.01 Aligned_cols=37 Identities=43% Similarity=0.767 Sum_probs=34.8
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceeccccee
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLY 39 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~ 39 (303)
.+++++|||||+|++.++|++|++.|||..+.|+.|+
T Consensus 34 ~~~~~~~~a~V~F~~~~~a~~a~~~l~g~~~~~~~ir 70 (70)
T PF00076_consen 34 SSGKSKGYAFVEFESEEDAEKALEELNGKKINGRKIR 70 (70)
T ss_dssp TTSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccccccceEEEEEcCHHHHHHHHHHcCCCEECccCcC
Confidence 5688999999999999999999999999999999875
No 14
>KOG0108|consensus
Probab=98.24 E-value=1e-06 Score=87.77 Aligned_cols=50 Identities=32% Similarity=0.612 Sum_probs=45.7
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH 52 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~ 52 (303)
+||++|||||++|.+.++|..|++.|||.++.||+|+|+|+.....+...
T Consensus 55 ~tG~~~G~~f~~~~~~~~~~~a~~~lNg~~~~gr~l~v~~~~~~~~~~~~ 104 (435)
T KOG0108|consen 55 ETGKPKGFGFCEFTDEETAERAIRNLNGAEFNGRKLRVNYASNRKNAERS 104 (435)
T ss_pred cCCCcCceeeEecCchhhHHHHHHhcCCcccCCceEEeecccccchhHHH
Confidence 58999999999999999999999999999999999999999876655443
No 15
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=98.20 E-value=1.7e-06 Score=89.08 Aligned_cols=82 Identities=22% Similarity=0.390 Sum_probs=57.8
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHHHHHHHHHH------HHHHhhhhcCCCCCCCCCC
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR------IANMRMQQMGQLFQPGSTG 79 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~~~~~~~q~------~~~~r~~~~~~~~~~~~~~ 79 (303)
+.|+||||+|++.++|++|+++|||.+|+|+.|+|+||++++..... .|..- ....+...+.+.+++. +.
T Consensus 267 ~~rgfAFVeF~s~e~A~kAi~~lnG~~i~Gr~I~V~~Akp~~~~~~~---~~~rg~gg~~~~~~~~~~~~g~~~sp~-s~ 342 (578)
T TIGR01648 267 KIRDYAFVHFEDREDAVKAMDELNGKELEGSEIEVTLAKPVDKKSYV---RYTRGTGGRGKERQAARQSLGQVYDPA-SR 342 (578)
T ss_pred eecCeEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEccCCCccccc---ccccccCCCcccccccccccCcccCcc-cc
Confidence 46899999999999999999999999999999999999876432110 00000 0001123455666664 56
Q ss_pred CCCCCCCCCCCc
Q psy14476 80 GYFVPTLPQPQR 91 (303)
Q Consensus 80 ~~f~~~lp~~~~ 91 (303)
++|+++++++..
T Consensus 343 ~~~~g~~~~~~~ 354 (578)
T TIGR01648 343 SLAYEDYYYHPP 354 (578)
T ss_pred cccccccccccc
Confidence 789999988654
No 16
>KOG0123|consensus
Probab=98.16 E-value=1.6e-06 Score=84.83 Aligned_cols=73 Identities=15% Similarity=-0.018 Sum_probs=64.7
Q ss_pred hhHhhhcChHHHHHhhhccchhhhhhhCCCCCCCchhhcccCChHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q psy14476 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295 (303)
Q Consensus 223 as~l~~~~~~~qk~~lGe~ly~~v~~~~p~~A~KITGMlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~~~ 295 (303)
..++......+..+.+||....+|...+...+..++.+.++.+.++...|++-...+..+....+++.+.++.
T Consensus 279 d~~~~~e~L~~~f~~~GeI~s~kv~~~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~ 351 (369)
T KOG0123|consen 279 DETLSDEKLRKIFSSFGEITSAKVMVDENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKED 351 (369)
T ss_pred ccccchhHHHHHHhcccceeeEEEEeccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhcc
Confidence 3566777888899999999999999999999999999999999999999999999888888888888886554
No 17
>KOG0145|consensus
Probab=98.14 E-value=1.8e-06 Score=80.17 Aligned_cols=45 Identities=36% Similarity=0.665 Sum_probs=43.2
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
+|.|-|||||.|.+++||++||..|||..|..|.|+|+||++..+
T Consensus 79 tGqSLGYGFVNYv~p~DAe~AintlNGLrLQ~KTIKVSyARPSs~ 123 (360)
T KOG0145|consen 79 TGQSLGYGFVNYVRPKDAEKAINTLNGLRLQNKTIKVSYARPSSD 123 (360)
T ss_pred cccccccceeeecChHHHHHHHhhhcceeeccceEEEEeccCChh
Confidence 799999999999999999999999999999999999999998765
No 18
>KOG4207|consensus
Probab=98.13 E-value=1.6e-06 Score=78.28 Aligned_cols=41 Identities=32% Similarity=0.632 Sum_probs=39.4
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
|+.++||+||-|.+..+|++|++.|||.+|+||.|.|.+|.
T Consensus 51 Tr~sRgFaFVrf~~k~daedA~damDG~~ldgRelrVq~ar 91 (256)
T KOG4207|consen 51 TRQSRGFAFVRFHDKRDAEDALDAMDGAVLDGRELRVQMAR 91 (256)
T ss_pred cccccceeEEEeeecchHHHHHHhhcceeeccceeeehhhh
Confidence 78899999999999999999999999999999999999875
No 19
>KOG0144|consensus
Probab=98.13 E-value=3.2e-06 Score=83.06 Aligned_cols=54 Identities=35% Similarity=0.542 Sum_probs=46.4
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCce-e--cccceeeecccchHHHHHHHH
Q psy14476 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRI-I--GSKPLYVALAQRKEDRKAHLA 54 (303)
Q Consensus 1 ~d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~-l--~GR~L~V~~A~~k~~r~~~~~ 54 (303)
||++|.||||+||+|++.|-|..||+.|||.. + +..+|.|+||..+++|..+..
T Consensus 158 rd~~~~sRGcaFV~fstke~A~~Aika~ng~~tmeGcs~PLVVkFADtqkdk~~~~l 214 (510)
T KOG0144|consen 158 RDPDGLSRGCAFVKFSTKEMAVAAIKALNGTQTMEGCSQPLVVKFADTQKDKDGKRL 214 (510)
T ss_pred ecccccccceeEEEEehHHHHHHHHHhhccceeeccCCCceEEEecccCCCchHHHH
Confidence 68899999999999999999999999999964 4 457999999998777665544
No 20
>smart00360 RRM RNA recognition motif.
Probab=98.10 E-value=5.1e-06 Score=58.60 Aligned_cols=38 Identities=47% Similarity=0.813 Sum_probs=35.5
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeee
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA 41 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~ 41 (303)
+++++|||||+|.+.++|.+|++.+++..+.|+.|.|.
T Consensus 34 ~~~~~~~a~v~f~~~~~a~~a~~~~~~~~~~~~~~~v~ 71 (71)
T smart00360 34 TGKSKGFAFVEFESEEDAEKALEALNGKELDGRPLKVK 71 (71)
T ss_pred CCCCCceEEEEeCCHHHHHHHHHHcCCCeeCCcEEEeC
Confidence 57899999999999999999999999999999998874
No 21
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.09 E-value=3.5e-06 Score=87.10 Aligned_cols=45 Identities=22% Similarity=0.359 Sum_probs=41.9
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|++.++|.+||+.||+..|+|+.|+|+++..+.
T Consensus 241 ~tgksKGfGFVeFe~~e~A~kAI~amNg~elgGr~LrV~kAi~pP 285 (612)
T TIGR01645 241 TGRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTPP 285 (612)
T ss_pred CCCCcCCeEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEecCCCc
Confidence 368999999999999999999999999999999999999998653
No 22
>KOG0123|consensus
Probab=98.09 E-value=1.4e-06 Score=85.23 Aligned_cols=59 Identities=71% Similarity=1.102 Sum_probs=54.4
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHHHHHHHHHH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~~~~~~~q~ 60 (303)
|+.|+|+|||||+|++.++|.+|+..+|+..+.+++|+|.+++++.+++.+++..+..+
T Consensus 305 ~~~g~skG~gfV~fs~~eeA~~A~~~~n~~~i~~k~l~vav~qr~~~r~~~~~~~~~~~ 363 (369)
T KOG0123|consen 305 DENGKSKGFGFVEFSSPEEAKKAMTEMNGRLIGGKPLYVAVAQRKEDRRARLQAVFGAR 363 (369)
T ss_pred ccCCCccceEEEEcCCHHHHHHHHHhhChhhhcCCchhhhHHhhhccchhhhhhhccee
Confidence 67899999999999999999999999999999999999999999999988887776543
No 23
>KOG0117|consensus
Probab=98.06 E-value=3.7e-06 Score=82.84 Aligned_cols=44 Identities=36% Similarity=0.557 Sum_probs=39.7
Q ss_pred CC-CCCCcccEEEEEeCCHHHHHHHHHHhCCceec-ccceeeeccc
Q psy14476 1 MS-EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIG-SKPLYVALAQ 44 (303)
Q Consensus 1 ~d-~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~-GR~L~V~~A~ 44 (303)
|| .+|.+||||||+|.+.++|++||+.||+++|. ||.|.|+.+.
T Consensus 117 mD~~sG~nRGYAFVtf~~Ke~Aq~Aik~lnn~Eir~GK~igvc~Sv 162 (506)
T KOG0117|consen 117 MDPFSGDNRGYAFVTFCTKEEAQEAIKELNNYEIRPGKLLGVCVSV 162 (506)
T ss_pred ecccCCCCcceEEEEeecHHHHHHHHHHhhCccccCCCEeEEEEee
Confidence 46 68999999999999999999999999999986 8999888654
No 24
>KOG0126|consensus
Probab=98.04 E-value=8.7e-07 Score=78.48 Aligned_cols=43 Identities=30% Similarity=0.585 Sum_probs=40.2
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
.||+||||||+||++..+.--||..|||..|.||.|+|+....
T Consensus 72 ~TGKSKGFaFLcYEDQRSTILAVDN~NGiki~gRtirVDHv~~ 114 (219)
T KOG0126|consen 72 KTGKSKGFAFLCYEDQRSTILAVDNLNGIKILGRTIRVDHVSN 114 (219)
T ss_pred CCCcccceEEEEecCccceEEEEeccCCceecceeEEeeeccc
Confidence 4999999999999999999999999999999999999997653
No 25
>KOG0226|consensus
Probab=98.03 E-value=4.6e-06 Score=77.22 Aligned_cols=54 Identities=35% Similarity=0.708 Sum_probs=44.7
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHHHHHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~~~~~ 56 (303)
.||+|||||||.|.++.++..|+.+|||+.++.|+|+......++......+++
T Consensus 227 RTgKSkgygfVSf~~pad~~rAmrem~gkyVgsrpiklRkS~wkeRn~dvv~kk 280 (290)
T KOG0226|consen 227 RTGKSKGYGFVSFRDPADYVRAMREMNGKYVGSRPIKLRKSEWKERNLDVVKKK 280 (290)
T ss_pred cccccccceeeeecCHHHHHHHHHhhcccccccchhHhhhhhHHhhhhHHHhHH
Confidence 489999999999999999999999999999999999987666655333333333
No 26
>KOG4208|consensus
Probab=98.02 E-value=4.3e-06 Score=75.22 Aligned_cols=44 Identities=32% Similarity=0.415 Sum_probs=41.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.||.|||||||+|++.|.|.-|.+.||++.|.++-|.|.+--+.
T Consensus 87 rTGNSKgYAFVEFEs~eVA~IaAETMNNYLl~e~lL~c~vmppe 130 (214)
T KOG4208|consen 87 RTGNSKGYAFVEFESEEVAKIAAETMNNYLLMEHLLECHVMPPE 130 (214)
T ss_pred ccCCcCceEEEEeccHHHHHHHHHHhhhhhhhhheeeeEEeCch
Confidence 48999999999999999999999999999999999999877654
No 27
>TIGR01645 half-pint poly-U binding splicing factor, half-pint family. In the case of PUF60 (GP|6176532), in complex with p54, and in the presence of U2AF, facilitates association of U2 snRNP with pre-mRNA.
Probab=98.00 E-value=5.8e-06 Score=85.55 Aligned_cols=43 Identities=35% Similarity=0.689 Sum_probs=39.9
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
.+|+|||||||+|++.++|++||+.|||..|+||.|+|.+...
T Consensus 144 ~TgkskGfAFVeF~s~e~A~~Ai~~lnG~~i~GR~IkV~rp~~ 186 (612)
T TIGR01645 144 ATGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 186 (612)
T ss_pred CCCCcCCeEEEEeCcHHHHHHHHHhcCCeEEecceeeeccccc
Confidence 4899999999999999999999999999999999999986543
No 28
>TIGR01659 sex-lethal sex-lethal family splicing factor. This model describes the sex-lethal family of splicing factors found in Dipteran insects. The sex-lethal phenotype, however, may be limited to the Melanogasters and closely related species. In Drosophila the protein acts as an inhibitor of splicing. This subfamily is most closely related to the ELAV/HUD subfamily of splicing factors (TIGR01661).
Probab=97.96 E-value=6.6e-06 Score=79.94 Aligned_cols=44 Identities=36% Similarity=0.577 Sum_probs=40.3
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecc--cceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS--KPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~G--R~L~V~~A~~k 46 (303)
.+|++||||||+|++.++|++||+.||+..|++ ++|.|.+|..+
T Consensus 230 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~~~g~~~~l~V~~a~~~ 275 (346)
T TIGR01659 230 LTGTPRGVAFVRFNKREEAQEAISALNNVIPEGGSQPLTVRLAEEH 275 (346)
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCcc
Confidence 389999999999999999999999999999876 68999998865
No 29
>PF14259 RRM_6: RNA recognition motif (a.k.a. RRM, RBD, or RNP domain); PDB: 2DNN_A 1WI6_A 2EVZ_A 2ADC_A 1QM9_A 2KG1_A 2HGN_A 1U2F_A 2G4B_A 2HZC_A ....
Probab=97.95 E-value=1.4e-05 Score=58.68 Aligned_cols=36 Identities=47% Similarity=0.786 Sum_probs=33.7
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceeccccee
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLY 39 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~ 39 (303)
+|+++|+|||+|.+.++|.+|++.+++..|+||.|+
T Consensus 35 ~~~~~~~a~v~f~~~~~a~~al~~~~~~~~~g~~l~ 70 (70)
T PF14259_consen 35 DGQSRGFAFVEFSSEEDAKRALELLNGKEIDGRKLR 70 (70)
T ss_dssp TSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEE
T ss_pred ccccCCEEEEEeCCHHHHHHHHHHCCCcEECCEEcC
Confidence 478999999999999999999999999999999875
No 30
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.91 E-value=1.3e-05 Score=79.42 Aligned_cols=44 Identities=48% Similarity=0.767 Sum_probs=41.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.+|++||||||+|.+.++|.+|++.|||..|.|++|.|.|+...
T Consensus 223 ~~g~~~g~afV~f~~~e~A~~A~~~l~g~~i~g~~i~v~~a~~~ 266 (457)
T TIGR01622 223 ETGRSKGFGFIQFHDAEEAKEALEVMNGFELAGRPIKVGYAQDS 266 (457)
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCcEECCEEEEEEEccCC
Confidence 36799999999999999999999999999999999999998843
No 31
>TIGR01648 hnRNP-R-Q heterogeneous nuclear ribonucleoprotein R, Q family. Sequences in this subfamily include the human heterogeneous nuclear ribonucleoproteins (hnRNP) R, Q and APOBEC-1 complementation factor (aka APOBEC-1 stimulating protein). These proteins contain three RNA recognition domains (rrm: pfam00076) and a somewhat variable C-terminal domain.
Probab=97.89 E-value=1.5e-05 Score=82.14 Aligned_cols=44 Identities=34% Similarity=0.521 Sum_probs=38.8
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCceec-ccceeeeccc
Q psy14476 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIG-SKPLYVALAQ 44 (303)
Q Consensus 1 ~d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~-GR~L~V~~A~ 44 (303)
+|.+|+|||||||+|.+.++|++||+.||+.+|. ||.|.|+++.
T Consensus 92 ~D~sG~sRGfaFV~F~~~e~A~~Ai~~lng~~i~~Gr~l~V~~S~ 136 (578)
T TIGR01648 92 MDFSGQNRGYAFVTFCGKEEAKEAVKLLNNYEIRPGRLLGVCISV 136 (578)
T ss_pred ECCCCCccceEEEEeCCHHHHHHHHHHcCCCeecCCccccccccc
Confidence 4789999999999999999999999999999885 7777776553
No 32
>smart00362 RRM_2 RNA recognition motif.
Probab=97.89 E-value=2.1e-05 Score=55.72 Aligned_cols=37 Identities=51% Similarity=0.890 Sum_probs=34.6
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeee
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA 41 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~ 41 (303)
++++|+|||+|.+.++|++|++.+++..+.|+.|.|.
T Consensus 36 ~~~~~~~~v~f~~~~~a~~a~~~~~~~~~~~~~i~v~ 72 (72)
T smart00362 36 GKSKGFAFVEFESEEDAEKAIEALNGTKLGGRPLRVE 72 (72)
T ss_pred CCCCceEEEEeCCHHHHHHHHHHhCCcEECCEEEeeC
Confidence 6788999999999999999999999999999998874
No 33
>KOG0149|consensus
Probab=97.88 E-value=8.2e-06 Score=74.71 Aligned_cols=41 Identities=41% Similarity=0.673 Sum_probs=36.4
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
.||||||||||+|.|.|.|.+|++. -.-.|+||+-.|++|.
T Consensus 49 ~t~rskGyGfVTf~d~~aa~rAc~d-p~piIdGR~aNcnlA~ 89 (247)
T KOG0149|consen 49 NTGRSKGYGFVTFRDAEAATRACKD-PNPIIDGRKANCNLAS 89 (247)
T ss_pred CCccccceeeEEeecHHHHHHHhcC-CCCcccccccccchhh
Confidence 4899999999999999999999986 3467999999999774
No 34
>COG0724 RNA-binding proteins (RRM domain) [General function prediction only]
Probab=97.87 E-value=1.8e-05 Score=69.37 Aligned_cols=43 Identities=49% Similarity=0.774 Sum_probs=40.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
.+|++||||||+|.+.++|..|++.++|..|.||+|.|.++..
T Consensus 152 ~~~~~~g~~~v~f~~~~~~~~a~~~~~~~~~~~~~~~v~~~~~ 194 (306)
T COG0724 152 ETGKSRGFAFVEFESEESAEKAIEELNGKELEGRPLRVQKAQP 194 (306)
T ss_pred ccCccCceEEEEecCHHHHHHHHHHcCCCeECCceeEeecccc
Confidence 4899999999999999999999999999999999999999654
No 35
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.87 E-value=1.6e-05 Score=79.56 Aligned_cols=43 Identities=30% Similarity=0.483 Sum_probs=40.7
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
.+|+++|||||+|.+.++|+.||+.|||..|.|+.|.|.+|..
T Consensus 332 ~~g~~~g~afv~f~~~~~a~~A~~~l~g~~~~~~~l~v~~a~~ 374 (509)
T TIGR01642 332 ATGLSKGYAFCEYKDPSVTDVAIAALNGKDTGDNKLHVQRACV 374 (509)
T ss_pred CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECcc
Confidence 4799999999999999999999999999999999999999864
No 36
>KOG0107|consensus
Probab=97.83 E-value=1.1e-05 Score=71.22 Aligned_cols=41 Identities=32% Similarity=0.562 Sum_probs=37.8
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
...|||||+|+++.||+.|+..|||+.|+|..|.|.+...+
T Consensus 45 nPPGfAFVEFed~RDA~DAvr~LDG~~~cG~r~rVE~S~G~ 85 (195)
T KOG0107|consen 45 NPPGFAFVEFEDPRDAEDAVRYLDGKDICGSRIRVELSTGR 85 (195)
T ss_pred cCCCceEEeccCcccHHHHHhhcCCccccCceEEEEeecCC
Confidence 35699999999999999999999999999999999988754
No 37
>KOG0113|consensus
Probab=97.80 E-value=2.2e-05 Score=74.09 Aligned_cols=43 Identities=21% Similarity=0.474 Sum_probs=40.5
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
.||+|||||||+|+++.+...|.+..+|.+|+||.|.|++-..
T Consensus 138 vTgkskGYAFIeye~erdm~~AYK~adG~~Idgrri~VDvERg 180 (335)
T KOG0113|consen 138 VTGKSKGYAFIEYEHERDMKAAYKDADGIKIDGRRILVDVERG 180 (335)
T ss_pred ccCCccceEEEEeccHHHHHHHHHhccCceecCcEEEEEeccc
Confidence 5899999999999999999999999999999999999998654
No 38
>KOG0147|consensus
Probab=97.75 E-value=2.2e-05 Score=78.99 Aligned_cols=44 Identities=39% Similarity=0.724 Sum_probs=41.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
+||++||||||+|.+.++|.+|++.|||.+|.||.|+|+.-..+
T Consensus 315 ~tG~skgfGfi~f~~~~~ar~a~e~lngfelAGr~ikV~~v~~r 358 (549)
T KOG0147|consen 315 ETGRSKGFGFITFVNKEDARKALEQLNGFELAGRLIKVSVVTER 358 (549)
T ss_pred ccccccCcceEEEecHHHHHHHHHHhccceecCceEEEEEeeee
Confidence 49999999999999999999999999999999999999977654
No 39
>cd00590 RRM RRM (RNA recognition motif), also known as RBD (RNA binding domain) or RNP (ribonucleoprotein domain), is a highly abundant domain in eukaryotes found in proteins involved in post-transcriptional gene expression processes including mRNA and rRNA processing, RNA export, and RNA stability. This domain is 90 amino acids in length and consists of a four-stranded beta-sheet packed against two alpha-helices. RRM usually interacts with ssRNA, but is also known to interact with ssDNA as well as proteins. RRM binds a variable number of nucleotides, ranging from two to eight. The active site includes three aromatic side-chains located within the conserved RNP1 and RNP2 motifs of the domain. The RRM domain is found in a variety heterogeneous nuclear ribonucleoproteins (hnRNPs), proteins implicated in regulation of alternative splicing, and protein components of small nuclear ribonucleoproteins (snRNPs).
Probab=97.74 E-value=6.6e-05 Score=53.35 Aligned_cols=39 Identities=46% Similarity=0.830 Sum_probs=35.5
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeec
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVAL 42 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~ 42 (303)
.++++|++||+|.+.++|+.|++.+++..+.|+.+.|.+
T Consensus 36 ~~~~~~~~~v~f~s~~~a~~a~~~~~~~~~~~~~~~v~~ 74 (74)
T cd00590 36 DTKSKGFAFVEFEDEEDAEKALEALNGKELGGRPLRVEF 74 (74)
T ss_pred CCCcceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEeC
Confidence 346789999999999999999999999999999999864
No 40
>KOG0130|consensus
Probab=97.73 E-value=2e-05 Score=67.06 Aligned_cols=44 Identities=25% Similarity=0.376 Sum_probs=41.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.||..|||++|+|++.++|++||..+||..|.|.+|.|+||.-+
T Consensus 109 RtGy~KGYaLvEYet~keAq~A~~~~Ng~~ll~q~v~VDw~Fv~ 152 (170)
T KOG0130|consen 109 RTGYVKGYALVEYETLKEAQAAIDALNGAELLGQNVSVDWCFVK 152 (170)
T ss_pred ccccccceeeeehHhHHHHHHHHHhccchhhhCCceeEEEEEec
Confidence 48999999999999999999999999999999999999999754
No 41
>KOG0127|consensus
Probab=97.71 E-value=3.5e-05 Score=77.80 Aligned_cols=46 Identities=37% Similarity=0.596 Sum_probs=42.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|+-+|||||.|....+|.+|++.+||.+|+||+|.|+||..|+.
T Consensus 153 ~dgklcGFaFV~fk~~~dA~~Al~~~N~~~i~gR~VAVDWAV~Kd~ 198 (678)
T KOG0127|consen 153 KDGKLCGFAFVQFKEKKDAEKALEFFNGNKIDGRPVAVDWAVDKDT 198 (678)
T ss_pred CCCCccceEEEEEeeHHHHHHHHHhccCceecCceeEEeeeccccc
Confidence 3578889999999999999999999999999999999999987754
No 42
>KOG0131|consensus
Probab=97.68 E-value=2.4e-05 Score=69.44 Aligned_cols=41 Identities=27% Similarity=0.455 Sum_probs=38.8
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
+.+.+|||||+|.+.|+|+-||+-||..+|.||+|+|+.+.
T Consensus 47 ~~~~qGygF~Ef~~eedadYAikiln~VkLYgrpIrv~kas 87 (203)
T KOG0131|consen 47 TQKHQGYGFAEFRTEEDADYAIKILNMVKLYGRPIRVNKAS 87 (203)
T ss_pred cccccceeEEEEechhhhHHHHHHHHHHHhcCceeEEEecc
Confidence 56789999999999999999999999999999999999876
No 43
>KOG4212|consensus
Probab=97.67 E-value=3.6e-05 Score=75.99 Aligned_cols=44 Identities=27% Similarity=0.497 Sum_probs=41.3
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 1 ~d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
+|++||+|||+.|+|+++|.++||++.||-+.+.||+|+|+-..
T Consensus 79 ~D~~GK~rGcavVEFk~~E~~qKa~E~lnk~~~~GR~l~vKEd~ 122 (608)
T KOG4212|consen 79 FDESGKARGCAVVEFKDPENVQKALEKLNKYEVNGRELVVKEDH 122 (608)
T ss_pred cccCCCcCCceEEEeeCHHHHHHHHHHhhhccccCceEEEeccC
Confidence 58999999999999999999999999999999999999998544
No 44
>KOG0131|consensus
Probab=97.66 E-value=3.8e-05 Score=68.15 Aligned_cols=48 Identities=33% Similarity=0.682 Sum_probs=44.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~ 50 (303)
.||+++|||||.|++.|.+++||+.|||..++.|+|.|.++.++....
T Consensus 134 ~tg~~~~~g~i~~~sfeasd~ai~s~ngq~l~nr~itv~ya~k~~~kg 181 (203)
T KOG0131|consen 134 DTGNPKGFGFINYASFEASDAAIGSMNGQYLCNRPITVSYAFKKDTKG 181 (203)
T ss_pred cCCCCCCCeEEechhHHHHHHHHHHhccchhcCCceEEEEEEecCCCc
Confidence 479999999999999999999999999999999999999998765443
No 45
>KOG0124|consensus
Probab=97.64 E-value=3.4e-05 Score=74.71 Aligned_cols=42 Identities=36% Similarity=0.706 Sum_probs=39.8
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
||++|||+||+|+-+|.|.-|++.|||..++||.|+|.+-.+
T Consensus 151 T~kHKgFAFVEYEvPEaAqLAlEqMNg~mlGGRNiKVgrPsN 192 (544)
T KOG0124|consen 151 TGKHKGFAFVEYEVPEAAQLALEQMNGQMLGGRNIKVGRPSN 192 (544)
T ss_pred cccccceEEEEEeCcHHHHHHHHHhccccccCccccccCCCC
Confidence 899999999999999999999999999999999999996554
No 46
>PLN03213 repressor of silencing 3; Provisional
Probab=97.62 E-value=8.9e-05 Score=74.23 Aligned_cols=43 Identities=23% Similarity=0.383 Sum_probs=39.1
Q ss_pred CCCCcccEEEEEeCCH--HHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSP--EEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~--e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
+|| ||||||+|.+. .++++||..|||.++.||.|+|..|++.-
T Consensus 45 ETG--RGFAFVEMssdddaEeeKAISaLNGAEWKGR~LKVNKAKP~Y 89 (759)
T PLN03213 45 TKG--RSFAYIDFSPSSTNSLTKLFSTYNGCVWKGGRLRLEKAKEHY 89 (759)
T ss_pred ccC--CceEEEEecCCcHHHHHHHHHHhcCCeecCceeEEeeccHHH
Confidence 467 99999999987 78999999999999999999999998653
No 47
>TIGR01622 SF-CC1 splicing factor, CC1-like family. A homologous gene from Plasmodium falciparum was identified in the course of the analysis of that genome at TIGR and was included in the model.
Probab=97.55 E-value=9.2e-05 Score=73.28 Aligned_cols=43 Identities=30% Similarity=0.535 Sum_probs=39.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.+|++||||||+|.+.++|.+||. |+|..|.|++|.|.++...
T Consensus 126 ~~~~skg~afVeF~~~e~A~~Al~-l~g~~~~g~~i~v~~~~~~ 168 (457)
T TIGR01622 126 NSRRSKGVAYVEFYDVESVIKALA-LTGQMLLGRPIIVQSSQAE 168 (457)
T ss_pred CCCCcceEEEEEECCHHHHHHHHH-hCCCEECCeeeEEeecchh
Confidence 378999999999999999999996 8999999999999987543
No 48
>KOG0146|consensus
Probab=97.55 E-value=0.00017 Score=67.56 Aligned_cols=57 Identities=35% Similarity=0.489 Sum_probs=46.8
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCce-ec--ccceeeecccchHHHHHHHHHHHH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRI-IG--SKPLYVALAQRKEDRKAHLASQYM 58 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~-l~--GR~L~V~~A~~k~~r~~~~~~~~~ 58 (303)
..+|.||||+||.|.+..||..||..|+|.. +- ...|.|+||...+||..+..++..
T Consensus 54 g~dg~sKGCAFVKf~s~~eAqaAI~aLHgSqTmpGASSSLVVK~ADTdkER~lRRMQQma 113 (371)
T KOG0146|consen 54 GPDGNSKGCAFVKFSSHAEAQAAINALHGSQTMPGASSSLVVKFADTDKERTLRRMQQMA 113 (371)
T ss_pred CCCCCCCCceEEEeccchHHHHHHHHhcccccCCCCccceEEEeccchHHHHHHHHHHHH
Confidence 3579999999999999999999999999865 33 467999999988887766555443
No 49
>TIGR01661 ELAV_HUD_SF ELAV/HuD family splicing factor. These proteins contain 3 RNA-recognition motifs (rrm: pfam00076).
Probab=97.50 E-value=0.00012 Score=69.61 Aligned_cols=44 Identities=34% Similarity=0.628 Sum_probs=39.5
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecc--cceeeecccchH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS--KPLYVALAQRKE 47 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~G--R~L~V~~A~~k~ 47 (303)
+|.+||||||+|++.++|++||+.|||..+.| ++|.|.++..+.
T Consensus 127 ~~~~~g~~fv~f~~~~~A~~ai~~l~g~~~~g~~~~i~v~~a~~~~ 172 (352)
T TIGR01661 127 TGLSKGVGFIRFDKRDEADRAIKTLNGTTPSGCTEPITVKFANNPS 172 (352)
T ss_pred CCCcCcEEEEEECCHHHHHHHHHHhCCCccCCCceeEEEEECCCCC
Confidence 68899999999999999999999999999887 678899887654
No 50
>PLN03120 nucleic acid binding protein; Provisional
Probab=97.43 E-value=0.00017 Score=67.42 Aligned_cols=39 Identities=21% Similarity=0.407 Sum_probs=35.7
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
.++|||||+|.++++|+.||. |||..|.||.|.|.++..
T Consensus 41 ~~~GfAFVtF~d~eaAe~All-LnG~~l~gr~V~Vt~a~~ 79 (260)
T PLN03120 41 ERSQIAYVTFKDPQGAETALL-LSGATIVDQSVTITPAED 79 (260)
T ss_pred CCCCEEEEEeCcHHHHHHHHH-hcCCeeCCceEEEEeccC
Confidence 468999999999999999995 999999999999998753
No 51
>KOG0943|consensus
Probab=97.39 E-value=8e-05 Score=80.58 Aligned_cols=63 Identities=32% Similarity=0.489 Sum_probs=59.9
Q ss_pred HHHhhhccchhhhhhhCCCCCCCchhhcccCChHHHHHhhCChHHHHHHHHHHH--HHHHHHHHH
Q psy14476 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV--AVLQAHQAK 296 (303)
Q Consensus 234 qk~~lGe~ly~~v~~~~p~~A~KITGMlLe~~~~ell~ll~~~~~L~~kv~eA~--~vl~~~~~~ 296 (303)
.+|.|||+||+.++.+.|.+|.||||||||.....+|..|-+++.|+..|++|+ +++..|.++
T Consensus 2607 e~Q~la~l~wgqhe~~l~a~~s~~sGfL~dek~~g~llgi~ce~p~eafVdaa~ndd~i~~H~qe 2671 (3015)
T KOG0943|consen 2607 ERQALAELLWGQHEAMLPAFASKISGFLLDEKPAGLLLGIACEDPLEAFVDAAMNDDLIIAHGQE 2671 (3015)
T ss_pred hhccchhhcchhhhhHHHHHHHhhhhhhhccchHHHHHHHhhcCcHHHHHHHhcchHHHHHHHHH
Confidence 589999999999999999999999999999999999999999999999999999 888888765
No 52
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.38 E-value=0.00019 Score=72.31 Aligned_cols=40 Identities=28% Similarity=0.396 Sum_probs=37.3
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
+||||||+|.+.++|.+||+.|||..|.|++|+|.+++.+
T Consensus 312 ~~g~afV~f~~~~~A~~Ai~~lng~~l~g~~l~v~~s~~~ 351 (481)
T TIGR01649 312 KKETALIEMADPYQAQLALTHLNGVKLFGKPLRVCPSKQQ 351 (481)
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEcccc
Confidence 4799999999999999999999999999999999998654
No 53
>TIGR01649 hnRNP-L_PTB hnRNP-L/PTB/hephaestus splicing factor family. Included in this family of heterogeneous ribonucleoproteins are PTB (polypyrimidine tract binding protein ) and hnRNP-L. These proteins contain four RNA recognition motifs (rrm: pfam00067).
Probab=97.23 E-value=0.00036 Score=70.41 Aligned_cols=42 Identities=21% Similarity=0.241 Sum_probs=37.5
Q ss_pred CcccEEEEEeCCHHHHHHHHHHh--CCceecccceeeecccchH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEM--NGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~l--nG~~l~GR~L~V~~A~~k~ 47 (303)
++||||||+|++.++|++||+.+ ++..|.|++|+|.|+..++
T Consensus 36 ~~k~~afVef~~~e~A~~Ai~~~~~~~~~l~g~~l~v~~s~~~~ 79 (481)
T TIGR01649 36 PGKRQALVEFEDEESAKACVNFATSVPIYIRGQPAFFNYSTSQE 79 (481)
T ss_pred CCCCEEEEEeCchHHHHHHHHHhhcCCceEcCeEEEEEecCCcc
Confidence 46899999999999999999974 7899999999999997653
No 54
>KOG0148|consensus
Probab=97.19 E-value=0.00034 Score=65.58 Aligned_cols=42 Identities=26% Similarity=0.539 Sum_probs=38.8
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
|-+||+||.|++.|.|.+||..||+.+|.|..++|.|.+...
T Consensus 198 k~qGYaFVrF~tkEaAahAIv~mNntei~G~~VkCsWGKe~~ 239 (321)
T KOG0148|consen 198 KDQGYAFVRFETKEAAAHAIVQMNNTEIGGQLVRCSWGKEGD 239 (321)
T ss_pred cccceEEEEecchhhHHHHHHHhcCceeCceEEEEeccccCC
Confidence 458999999999999999999999999999999999987654
No 55
>KOG0110|consensus
Probab=97.16 E-value=0.00038 Score=72.16 Aligned_cols=45 Identities=33% Similarity=0.581 Sum_probs=42.0
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 1 ~d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
++.+|+||+||||.|.+.++|++||+.+|+..|+-..|.|.+|..
T Consensus 2 ~t~dGk~R~F~FiGf~~eeeA~~Ai~~fn~s~i~ts~i~Ve~~~~ 46 (725)
T KOG0110|consen 2 RTKDGKFRRFGFIGFKSEEEAQKAIKYFNKSFINTSRITVEFCKS 46 (725)
T ss_pred cCCCCceeeeeEeeeccHHHHHHHHHHhhccccccceEEEEehhh
Confidence 457899999999999999999999999999999999999998874
No 56
>KOG0117|consensus
Probab=97.15 E-value=0.00047 Score=68.35 Aligned_cols=47 Identities=32% Similarity=0.617 Sum_probs=42.6
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH 52 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~ 52 (303)
+.|-||||.|.+.++|-+|++++||++|+|..|.|.+|++..+++..
T Consensus 291 k~rDYaFVHf~eR~davkAm~~~ngkeldG~~iEvtLAKP~~k~k~~ 337 (506)
T KOG0117|consen 291 KPRDYAFVHFAEREDAVKAMKETNGKELDGSPIEVTLAKPVDKKKKE 337 (506)
T ss_pred cccceeEEeecchHHHHHHHHHhcCceecCceEEEEecCChhhhccc
Confidence 56789999999999999999999999999999999999987765543
No 57
>KOG0121|consensus
Probab=97.13 E-value=0.00045 Score=58.39 Aligned_cols=42 Identities=21% Similarity=0.388 Sum_probs=38.0
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
-...||+||+|-+.++|..|++-++|..|+.|+|.|+|...=
T Consensus 75 ktpCGFCFVeyy~~~dA~~AlryisgtrLddr~ir~D~D~GF 116 (153)
T KOG0121|consen 75 KTPCGFCFVEYYSRDDAEDALRYISGTRLDDRPIRIDWDAGF 116 (153)
T ss_pred cCccceEEEEEecchhHHHHHHHhccCcccccceeeeccccc
Confidence 346799999999999999999999999999999999987543
No 58
>TIGR01642 U2AF_lg U2 snRNP auxilliary factor, large subunit, splicing factor. Members of this subfamily are found in plants, metazoa and fungi.
Probab=97.09 E-value=0.00046 Score=69.19 Aligned_cols=39 Identities=28% Similarity=0.388 Sum_probs=35.2
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
+++||||||+|.+.++|+.|| +|||..|.|+.|+|....
T Consensus 220 ~~~kg~afVeF~~~e~A~~Al-~l~g~~~~g~~l~v~r~~ 258 (509)
T TIGR01642 220 NKEKNFAFLEFRTVEEATFAM-ALDSIIYSNVFLKIRRPH 258 (509)
T ss_pred CCCCCEEEEEeCCHHHHhhhh-cCCCeEeeCceeEecCcc
Confidence 477999999999999999999 599999999999997543
No 59
>KOG0110|consensus
Probab=97.08 E-value=0.00053 Score=71.08 Aligned_cols=40 Identities=35% Similarity=0.687 Sum_probs=37.7
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
|.|||||+|.+.++|++|++.|+|..|+|+.|.|.++..+
T Consensus 559 SmGfgFVEF~~~e~A~~a~k~lqgtvldGH~l~lk~S~~k 598 (725)
T KOG0110|consen 559 SMGFGFVEFAKPESAQAALKALQGTVLDGHKLELKISENK 598 (725)
T ss_pred ccceeEEEecCHHHHHHHHHHhcCceecCceEEEEeccCc
Confidence 6799999999999999999999999999999999999833
No 60
>KOG0144|consensus
Probab=96.90 E-value=0.00084 Score=66.39 Aligned_cols=55 Identities=24% Similarity=0.433 Sum_probs=43.6
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCce-ecc--cceeeecccchHHHHHHHHHHHH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRI-IGS--KPLYVALAQRKEDRKAHLASQYM 58 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~-l~G--R~L~V~~A~~k~~r~~~~~~~~~ 58 (303)
||.|||||||.|.+.+||++||..|+..+ |-| .+|.|++|....+|..+..+.|.
T Consensus 72 t~~s~gcCFv~~~trk~a~~a~~Alhn~ktlpG~~~pvqvk~Ad~E~er~~~e~KLFv 129 (510)
T KOG0144|consen 72 TGQSKGCCFVKYYTRKEADEAINALHNQKTLPGMHHPVQVKYADGERERIVEERKLFV 129 (510)
T ss_pred cCcccceEEEEeccHHHHHHHHHHhhcccccCCCCcceeecccchhhhccccchhhhh
Confidence 78999999999999999999999998765 444 68999999876666433344443
No 61
>KOG0127|consensus
Probab=96.89 E-value=0.00059 Score=69.16 Aligned_cols=45 Identities=27% Similarity=0.505 Sum_probs=41.6
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
++.+||||||+|.-.||++.|+.+.++..|.||.|+|+.|.++..
T Consensus 43 s~~~RGfgfVtFam~ED~qrA~~e~~~~kf~Gr~l~v~~A~~R~r 87 (678)
T KOG0127|consen 43 SSEKRGFGFVTFAMEEDVQRALAETEQSKFEGRILNVDPAKKRAR 87 (678)
T ss_pred cccccCccceeeehHhHHHHHHHHhhcCcccceeccccccccccc
Confidence 567899999999999999999999999999999999999987654
No 62
>KOG4206|consensus
Probab=96.84 E-value=0.00092 Score=60.98 Aligned_cols=50 Identities=26% Similarity=0.412 Sum_probs=45.4
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH 52 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~ 52 (303)
.|.+.||=|||.|++.+.|..|+..|+|..+-||+++|.||+.+.+-..+
T Consensus 47 kt~KmRGQA~VvFk~~~~As~A~r~l~gfpFygK~mriqyA~s~sdii~~ 96 (221)
T KOG4206|consen 47 KTPKMRGQAFVVFKETEAASAALRALQGFPFYGKPMRIQYAKSDSDIIAQ 96 (221)
T ss_pred CCCCccCceEEEecChhHHHHHHHHhcCCcccCchhheecccCccchhhc
Confidence 47899999999999999999999999999999999999999988765443
No 63
>KOG0145|consensus
Probab=96.76 E-value=0.0014 Score=61.42 Aligned_cols=43 Identities=33% Similarity=0.588 Sum_probs=39.3
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceec--ccceeeecccch
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIG--SKPLYVALAQRK 46 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~--GR~L~V~~A~~k 46 (303)
||.|||.|||.|+..+||+.||+.|||.+-. ..+|.|+||...
T Consensus 165 tg~srGVgFiRFDKr~EAe~AIk~lNG~~P~g~tepItVKFannP 209 (360)
T KOG0145|consen 165 TGLSRGVGFIRFDKRIEAEEAIKGLNGQKPSGCTEPITVKFANNP 209 (360)
T ss_pred cceecceeEEEecchhHHHHHHHhccCCCCCCCCCCeEEEecCCc
Confidence 7999999999999999999999999999854 578999999865
No 64
>KOG0114|consensus
Probab=96.67 E-value=0.0052 Score=50.37 Aligned_cols=44 Identities=23% Similarity=0.357 Sum_probs=39.9
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
-..||-|||.|++..+|++|++.|+|..++++.|.|-+.++-+.
T Consensus 54 k~TrGTAFVVYedi~dAk~A~dhlsg~n~~~ryl~vlyyq~~~~ 97 (124)
T KOG0114|consen 54 KETRGTAFVVYEDIFDAKKACDHLSGYNVDNRYLVVLYYQPEDA 97 (124)
T ss_pred cCcCceEEEEehHhhhHHHHHHHhcccccCCceEEEEecCHHHH
Confidence 34689999999999999999999999999999999999886544
No 65
>PLN03121 nucleic acid binding protein; Provisional
Probab=96.65 E-value=0.0025 Score=59.03 Aligned_cols=40 Identities=18% Similarity=0.215 Sum_probs=35.8
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
+++++|||||+|.++++++.|+ .|||..|.+++|.|..+.
T Consensus 40 D~et~gfAfVtF~d~~aaetAl-lLnGa~l~d~~I~It~~~ 79 (243)
T PLN03121 40 SGEYACTAYVTFKDAYALETAV-LLSGATIVDQRVCITRWG 79 (243)
T ss_pred CCCcceEEEEEECCHHHHHHHH-hcCCCeeCCceEEEEeCc
Confidence 4677899999999999999999 589999999999998654
No 66
>KOG0105|consensus
Probab=96.05 E-value=0.0035 Score=56.14 Aligned_cols=39 Identities=26% Similarity=0.357 Sum_probs=36.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
-.|+||+|+++.+|+.||..-||..++|..|+|.++..-
T Consensus 45 ppfafVeFEd~RDAeDAiygRdGYdydg~rLRVEfprgg 83 (241)
T KOG0105|consen 45 PPFAFVEFEDPRDAEDAIYGRDGYDYDGCRLRVEFPRGG 83 (241)
T ss_pred CCeeEEEecCccchhhhhhcccccccCcceEEEEeccCC
Confidence 479999999999999999999999999999999998753
No 67
>KOG0415|consensus
Probab=96.03 E-value=0.0053 Score=59.66 Aligned_cols=45 Identities=22% Similarity=0.406 Sum_probs=41.9
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.||.|--|+||+|++.+++++|..+|+...|+.|.|.|+|++.-.
T Consensus 276 ktgdsLqyaFiEFen~escE~AyFKMdNvLIDDrRIHVDFSQSVs 320 (479)
T KOG0415|consen 276 KTGDSLQYAFIEFENKESCEQAYFKMDNVLIDDRRIHVDFSQSVS 320 (479)
T ss_pred cccchhheeeeeecchhhHHHHHhhhcceeeccceEEeehhhhhh
Confidence 489999999999999999999999999999999999999987643
No 68
>PF04059 RRM_2: RNA recognition motif 2; InterPro: IPR007201 This RNA recognition motif 2 is found in Meiosis protein mei2. It is found C-terminal to the RNA-binding region RNP-1 (IPR000504 from INTERPRO).
Probab=95.66 E-value=0.018 Score=46.35 Aligned_cols=41 Identities=27% Similarity=0.442 Sum_probs=36.0
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceec----ccceeeeccc
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIG----SKPLYVALAQ 44 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~----GR~L~V~~A~ 44 (303)
++.+.|||||.|.+++.+.+-.+.++|+.+. .|.+.|.||+
T Consensus 41 ~~~N~GYAFVNf~~~~~~~~F~~~f~g~~w~~~~s~Kvc~i~yAr 85 (97)
T PF04059_consen 41 NKCNLGYAFVNFTSPQAAIRFYKAFNGKKWPNFNSKKVCEISYAR 85 (97)
T ss_pred CCCceEEEEEEcCCHHHHHHHHHHHcCCccccCCCCcEEEEehhH
Confidence 5678999999999999999999999999886 5667788886
No 69
>KOG0109|consensus
Probab=95.52 E-value=0.0083 Score=56.97 Aligned_cols=41 Identities=24% Similarity=0.434 Sum_probs=38.0
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.-|+|+||.|+-.++|..||+.||+.+|.|+++.|.....+
T Consensus 110 ivkdy~fvh~d~~eda~~air~l~~~~~~gk~m~vq~stsr 150 (346)
T KOG0109|consen 110 IVKDYAFVHFDRAEDAVEAIRGLDNTEFQGKRMHVQLSTSR 150 (346)
T ss_pred eecceeEEEEeeccchHHHHhcccccccccceeeeeeeccc
Confidence 35899999999999999999999999999999999988765
No 70
>KOG4205|consensus
Probab=95.21 E-value=0.008 Score=57.84 Aligned_cols=46 Identities=30% Similarity=0.363 Sum_probs=41.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r 49 (303)
++.++||||||.|++.+.+++++. ...+.|+++.+.|..|.+|+..
T Consensus 134 ~~~~~rgFgfv~~~~e~sVdkv~~-~~f~~~~gk~vevkrA~pk~~~ 179 (311)
T KOG4205|consen 134 TTSRPRGFGFVTFDSEDSVDKVTL-QKFHDFNGKKVEVKRAIPKEVM 179 (311)
T ss_pred cccccccceeeEeccccccceecc-cceeeecCceeeEeeccchhhc
Confidence 478899999999999999999876 4889999999999999998754
No 71
>KOG4209|consensus
Probab=95.18 E-value=0.019 Score=53.11 Aligned_cols=40 Identities=35% Similarity=0.519 Sum_probs=37.0
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
+|.+|||+||+|.+.+...+|+. |||..|.|+.+.|.+.+
T Consensus 139 ~~~~k~~~yvef~~~~~~~~ay~-l~gs~i~~~~i~vt~~r 178 (231)
T KOG4209|consen 139 RGHPKGFAYVEFSSYELVEEAYK-LDGSEIPGPAIEVTLKR 178 (231)
T ss_pred CCCcceeEEEecccHhhhHHHhh-cCCcccccccceeeeee
Confidence 46799999999999999999999 99999999999999754
No 72
>PF11608 Limkain-b1: Limkain b1; InterPro: IPR024582 This entry represents a conserved domain found in limkain b1, which is a novel human autoantigen, localised to a subset of ABCD3 and PXF marked peroxisomes. Limkain b1 may be a relatively common target of human autoantibodies reactive to cytoplasmic vesicle-like structures [].; PDB: 2DIU_A.
Probab=95.11 E-value=0.031 Score=44.11 Aligned_cols=40 Identities=23% Similarity=0.331 Sum_probs=30.4
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
+.|-|+|.|.+.+.|++|.+.|+|..+.|++|.|.|....
T Consensus 38 ~~~tAilrF~~~~~A~RA~KRmegEdVfG~kI~v~~~~~~ 77 (90)
T PF11608_consen 38 SGGTAILRFPNQEFAERAQKRMEGEDVFGNKISVSFSPKN 77 (90)
T ss_dssp -TT-EEEEESSHHHHHHHHHHHTT--SSSS--EEESS--S
T ss_pred eCCEEEEEeCCHHHHHHHHHhhcccccccceEEEEEcCCc
Confidence 5688999999999999999999999999999999998543
No 73
>KOG2314|consensus
Probab=94.93 E-value=0.03 Score=57.36 Aligned_cols=41 Identities=37% Similarity=0.681 Sum_probs=35.9
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecc-cceeeec
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVAL 42 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~G-R~L~V~~ 42 (303)
|+.|.++||.|++|.+..+|+.||+.|||+.|+- +++.|..
T Consensus 99 ~e~ggtkG~lf~E~~~~~~A~~aVK~l~G~~ldknHtf~v~~ 140 (698)
T KOG2314|consen 99 DEEGGTKGYLFVEYASMRDAKKAVKSLNGKRLDKNHTFFVRL 140 (698)
T ss_pred CccCCeeeEEEEEecChhhHHHHHHhcccceecccceEEeeh
Confidence 6788899999999999999999999999999984 4555554
No 74
>KOG4661|consensus
Probab=94.83 E-value=0.021 Score=58.56 Aligned_cols=39 Identities=26% Similarity=0.457 Sum_probs=36.3
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
-|+||||++++.++|.++|+.|+..+|.||.|.|..++.
T Consensus 446 aRCYGfVTMSts~eAtkCI~hLHrTELHGrmISVEkaKN 484 (940)
T KOG4661|consen 446 ARCYGFVTMSTSAEATKCIEHLHRTELHGRMISVEKAKN 484 (940)
T ss_pred cceeEEEEecchHHHHHHHHHhhhhhhcceeeeeeeccc
Confidence 378999999999999999999999999999999998764
No 75
>KOG0106|consensus
Probab=94.79 E-value=0.012 Score=53.80 Aligned_cols=39 Identities=38% Similarity=0.697 Sum_probs=36.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.||+||+|++..+|+.||..+|+++|+|..+.|.++...
T Consensus 35 ~gf~fv~fed~rda~Dav~~l~~~~l~~e~~vve~~r~~ 73 (216)
T KOG0106|consen 35 NGFGFVEFEDPRDADDAVHDLDGKELCGERLVVEHARGK 73 (216)
T ss_pred cccceeccCchhhhhcccchhcCceecceeeeeeccccc
Confidence 589999999999999999999999999998999998853
No 76
>KOG4205|consensus
Probab=94.74 E-value=0.0084 Score=57.69 Aligned_cols=45 Identities=31% Similarity=0.596 Sum_probs=39.3
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r 49 (303)
+|+||||+||+|++.+..++++.. .-++|+||.|.+..|.++++.
T Consensus 44 t~rsrgFgfv~f~~~~~v~~vl~~-~~h~~dgr~ve~k~av~r~~~ 88 (311)
T KOG4205|consen 44 TGRSRGFGFVTFATPEGVDAVLNA-RTHKLDGRSVEPKRAVSREDQ 88 (311)
T ss_pred CCCcccccceecCCCcchheeecc-cccccCCccccceeccCcccc
Confidence 799999999999999999988864 667899999999999887754
No 77
>KOG0132|consensus
Probab=94.70 E-value=0.027 Score=59.42 Aligned_cols=45 Identities=20% Similarity=0.356 Sum_probs=41.3
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~ 50 (303)
.+||||||+.....+|.+|+.+|+...+.++.|+|.||..+.-+.
T Consensus 455 ~~R~cAfI~M~~RqdA~kalqkl~n~kv~~k~Iki~Wa~g~G~ks 499 (894)
T KOG0132|consen 455 PPRGCAFIKMVRRQDAEKALQKLSNVKVADKTIKIAWAVGKGPKS 499 (894)
T ss_pred cCCceeEEEEeehhHHHHHHHHHhcccccceeeEEeeeccCCcch
Confidence 468999999999999999999999999999999999999776555
No 78
>KOG0533|consensus
Probab=94.49 E-value=0.045 Score=50.97 Aligned_cols=45 Identities=27% Similarity=0.496 Sum_probs=41.4
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 1 ~d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
+|++|+|.|.|-|.|...++|..||+.++|..++|++|++....+
T Consensus 117 y~~~G~s~Gta~v~~~r~~DA~~avk~~~gv~ldG~~mk~~~i~~ 161 (243)
T KOG0533|consen 117 YDRAGRSLGTADVSFNRRDDAERAVKKYNGVALDGRPMKIEIISS 161 (243)
T ss_pred cCCCCCCCccceeeecchHhHHHHHHHhcCcccCCceeeeEEecC
Confidence 478999999999999999999999999999999999999886653
No 79
>KOG0124|consensus
Probab=94.04 E-value=0.035 Score=54.30 Aligned_cols=43 Identities=23% Similarity=0.380 Sum_probs=38.7
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.+.+|||||++|.+..+-+.||..||-..|+|.-|+|..+...
T Consensus 248 ~~~HkGyGfiEy~n~qs~~eAiasMNlFDLGGQyLRVGk~vTP 290 (544)
T KOG0124|consen 248 GRGHKGYGFIEYNNLQSQSEAIASMNLFDLGGQYLRVGKCVTP 290 (544)
T ss_pred CCCccceeeEEeccccchHHHhhhcchhhcccceEecccccCC
Confidence 4569999999999999999999999999999999999977543
No 80
>KOG0109|consensus
Probab=94.04 E-value=0.032 Score=53.12 Aligned_cols=41 Identities=22% Similarity=0.388 Sum_probs=38.2
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.-|-||||..++...+..||..|+|.+|+|..|+|.-++.|
T Consensus 34 IvKNYgFVHiEdktaaedairNLhgYtLhg~nInVeaSksK 74 (346)
T KOG0109|consen 34 IVKNYGFVHIEDKTAAEDAIRNLHGYTLHGVNINVEASKSK 74 (346)
T ss_pred eecccceEEeecccccHHHHhhcccceecceEEEEEecccc
Confidence 35789999999999999999999999999999999988877
No 81
>KOG1457|consensus
Probab=94.03 E-value=0.062 Score=49.55 Aligned_cols=40 Identities=28% Similarity=0.378 Sum_probs=35.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceec---ccceeeecccchH
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIG---SKPLYVALAQRKE 47 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~---GR~L~V~~A~~k~ 47 (303)
+-+|||+|.+..+|.+|+..|||..|+ +..|.+++|+...
T Consensus 77 ~pvaFatF~s~q~A~aamnaLNGvrFDpE~~stLhiElAKSNt 119 (284)
T KOG1457|consen 77 KPVAFATFTSHQFALAAMNALNGVRFDPETGSTLHIELAKSNT 119 (284)
T ss_pred cceEEEEecchHHHHHHHHHhcCeeeccccCceeEeeehhcCc
Confidence 469999999999999999999999987 6789999987653
No 82
>KOG0106|consensus
Probab=92.37 E-value=0.06 Score=49.30 Aligned_cols=38 Identities=26% Similarity=0.558 Sum_probs=34.4
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
.++|+||+|++.+++++|++.|++..+.++.|.|...-
T Consensus 132 ~~~~~~v~Fs~~~da~ra~~~l~~~~~~~~~l~~~~~~ 169 (216)
T KOG0106|consen 132 RRNFAFVEFSEQEDAKRALEKLDGKKLNGRRISVEKNS 169 (216)
T ss_pred hccccceeehhhhhhhhcchhccchhhcCceeeecccC
Confidence 37999999999999999999999999999999994443
No 83
>KOG1548|consensus
Probab=91.39 E-value=0.18 Score=48.99 Aligned_cols=44 Identities=23% Similarity=0.361 Sum_probs=41.8
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 1 ~d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
+|+.|+.||=|.++|...|+.+-|+.-|++..|.|+.|+|..|+
T Consensus 176 rd~~G~lKGDaLc~y~K~ESVeLA~~ilDe~~~rg~~~rVerAk 219 (382)
T KOG1548|consen 176 RDNQGKLKGDALCCYIKRESVELAIKILDEDELRGKKLRVERAK 219 (382)
T ss_pred ecCCCCccCceEEEeecccHHHHHHHHhCcccccCcEEEEehhh
Confidence 46789999999999999999999999999999999999999886
No 84
>KOG1995|consensus
Probab=91.38 E-value=0.13 Score=50.11 Aligned_cols=46 Identities=28% Similarity=0.448 Sum_probs=42.8
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
+|+++||=|.|+|+++..|+.||.-++++.+++-+|+|.+|..+..
T Consensus 111 eT~~~KGeatvS~~D~~~akaai~~~agkdf~gn~ikvs~a~~r~~ 156 (351)
T KOG1995|consen 111 ETGAPKGEATVSYEDPPAAKAAIEWFAGKDFCGNTIKVSLAERRTG 156 (351)
T ss_pred cccCcCCceeeeecChhhhhhhhhhhccccccCCCchhhhhhhccC
Confidence 6899999999999999999999999999999999999999987653
No 85
>KOG0120|consensus
Probab=91.27 E-value=0.093 Score=53.48 Aligned_cols=44 Identities=34% Similarity=0.552 Sum_probs=40.5
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.+|.||||+|.+|.++...+.|+..|||..+.++.|.|..|...
T Consensus 326 ~~g~skg~af~ey~dpsvtd~A~agLnGm~lgd~~lvvq~A~~g 369 (500)
T KOG0120|consen 326 ATGNSKGFAFCEYCDPSVTDQAIAGLNGMQLGDKKLVVQRAIVG 369 (500)
T ss_pred ccccccceeeeeeeCCcchhhhhcccchhhhcCceeEeehhhcc
Confidence 36899999999999999999999999999999999999987643
No 86
>KOG4454|consensus
Probab=89.36 E-value=0.23 Score=45.81 Aligned_cols=43 Identities=21% Similarity=0.224 Sum_probs=37.6
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
|.+++-| |+||.|.++....-|++.|||..+.++.|.|.+-..
T Consensus 44 ~~d~~~k-Fa~v~f~~E~sv~~a~~L~ng~~l~~~e~q~~~r~G 86 (267)
T KOG4454|consen 44 GQDQEQK-FAYVFFPNENSVQLAGQLENGDDLEEDEEQRTLRCG 86 (267)
T ss_pred CccCCCc-eeeeecccccchhhhhhhcccchhccchhhcccccC
Confidence 3456777 999999999999999999999999999998887553
No 87
>KOG0153|consensus
Probab=89.30 E-value=0.35 Score=47.10 Aligned_cols=38 Identities=32% Similarity=0.431 Sum_probs=33.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHh-CCceecccceeeecccc
Q psy14476 8 KGFGFVCFSSPEEATKAVTEM-NGRIIGSKPLYVALAQR 45 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~l-nG~~l~GR~L~V~~A~~ 45 (303)
+|+|||.|.+.+.|+.|.++. |-..|+|++|+|.|..+
T Consensus 264 ~~CAFv~ftTR~aAE~Aae~~~n~lvI~G~Rl~i~Wg~~ 302 (377)
T KOG0153|consen 264 KGCAFVTFTTREAAEKAAEKSFNKLVINGFRLKIKWGRP 302 (377)
T ss_pred cccceeeehhhHHHHHHHHhhcceeeecceEEEEEeCCC
Confidence 679999999999999988754 44568999999999987
No 88
>KOG4211|consensus
Probab=88.83 E-value=0.4 Score=48.54 Aligned_cols=50 Identities=34% Similarity=0.446 Sum_probs=41.2
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHH
Q psy14476 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51 (303)
Q Consensus 1 ~d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~ 51 (303)
+|..|++-|=+||+|++.|.|++|+.. |...|..|-|.|..+...+.++.
T Consensus 138 ~d~rgR~tGEAfVqF~sqe~ae~Al~r-hre~iGhRYIEvF~Ss~~e~~~~ 187 (510)
T KOG4211|consen 138 MDQRGRPTGEAFVQFESQESAEIALGR-HRENIGHRYIEVFRSSRAEVKRA 187 (510)
T ss_pred ccCCCCcccceEEEecCHHHHHHHHHH-HHHhhccceEEeehhHHHHHHhh
Confidence 466789999999999999999999986 77788888888887776555443
No 89
>KOG0147|consensus
Probab=88.63 E-value=0.46 Score=48.65 Aligned_cols=39 Identities=26% Similarity=0.333 Sum_probs=35.7
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
.|-||-||.|.+.+.|..|+++|||..|.||.|...|-.
T Consensus 488 ns~g~VYvrc~s~~~A~~a~~alhgrWF~gr~Ita~~~~ 526 (549)
T KOG0147|consen 488 NSAGCVYVRCPSAEAAGTAVKALHGRWFAGRMITAKYLP 526 (549)
T ss_pred CCCceEEEecCcHHHHHHHHHHHhhhhhccceeEEEEee
Confidence 455999999999999999999999999999999988753
No 90
>COG5175 MOT2 Transcriptional repressor [Transcription]
Probab=86.90 E-value=0.62 Score=45.44 Aligned_cols=35 Identities=20% Similarity=0.563 Sum_probs=33.2
Q ss_pred EEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 12 FVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 12 FV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
||+|.+.|||.++|.+.+|..++||.|+..|...|
T Consensus 169 YITy~~kedAarcIa~vDgs~~DGr~lkatYGTTK 203 (480)
T COG5175 169 YITYSTKEDAARCIAEVDGSLLDGRVLKATYGTTK 203 (480)
T ss_pred EEEecchHHHHHHHHHhccccccCceEeeecCchH
Confidence 99999999999999999999999999999988765
No 91
>KOG1548|consensus
Probab=86.50 E-value=1.1 Score=43.83 Aligned_cols=38 Identities=26% Similarity=0.441 Sum_probs=33.6
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecc
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A 43 (303)
...|.+-|.|.+.++|+.+|+.|+|+.|+||.|.-...
T Consensus 312 hPdGvvtV~f~n~eeA~~ciq~m~GR~fdgRql~A~i~ 349 (382)
T KOG1548|consen 312 HPDGVVTVSFRNNEEADQCIQTMDGRWFDGRQLTASIW 349 (382)
T ss_pred CCCceeEEEeCChHHHHHHHHHhcCeeecceEEEEEEe
Confidence 45688999999999999999999999999999875543
No 92
>KOG0116|consensus
Probab=86.44 E-value=0.51 Score=47.31 Aligned_cols=37 Identities=30% Similarity=0.487 Sum_probs=32.9
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeec
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVAL 42 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~ 42 (303)
+++.+||||+|.+.+++..||.+ +-..|++++|+|.-
T Consensus 327 ~~~~~fgFV~f~~~~~~~~~i~A-sp~~ig~~kl~Vee 363 (419)
T KOG0116|consen 327 GKNPCFGFVEFENAAAVQNAIEA-SPLEIGGRKLNVEE 363 (419)
T ss_pred CCcCceEEEEEeecchhhhhhhc-CccccCCeeEEEEe
Confidence 56669999999999999999987 67889999999984
No 93
>KOG2202|consensus
Probab=86.44 E-value=0.44 Score=44.63 Aligned_cols=40 Identities=28% Similarity=0.415 Sum_probs=35.6
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
-+|=.||.|...|+|.+|++.||+..+.|++|...+.---
T Consensus 109 l~GNVYV~f~~Ee~ae~a~~~lnnRw~~G~pi~ae~~pvT 148 (260)
T KOG2202|consen 109 LVGNVYVKFRSEEDAEAALEDLNNRWYNGRPIHAELSPVT 148 (260)
T ss_pred hhhhhhhhcccHHHHHHHHHHHcCccccCCcceeeecCcC
Confidence 3678899999999999999999999999999998876543
No 94
>KOG4210|consensus
Probab=83.55 E-value=0.37 Score=45.91 Aligned_cols=46 Identities=33% Similarity=0.569 Sum_probs=40.6
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
+++|.++||+||+|.+..++..++.. ....+.++++.+.+..++.+
T Consensus 221 ~~s~~~kg~a~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~ 266 (285)
T KOG4210|consen 221 EESGDSKGFAYVDFSAGNSKKLALND-QTRSIGGRPLRLEEDEPRPK 266 (285)
T ss_pred CCccchhhhhhhhhhhchhHHHHhhc-ccCcccCcccccccCCCCcc
Confidence 46899999999999999999999887 78899999999998876643
No 95
>KOG4849|consensus
Probab=82.80 E-value=41 Score=33.36 Aligned_cols=41 Identities=17% Similarity=0.315 Sum_probs=35.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A 43 (303)
.+|.||||++|...+....++-++-|--++|.|..-.|--+
T Consensus 119 ~NGQSKG~AL~~~~SdAa~Kq~MeiLP~k~iHGQ~P~V~~~ 159 (498)
T KOG4849|consen 119 TNGQSKGYALLVLNSDAAVKQTMEILPTKTIHGQSPTVLSY 159 (498)
T ss_pred cCCcccceEEEEecchHHHHHHHHhcccceecCCCCeeecc
Confidence 37999999999999999999999999999999987555543
No 96
>KOG4211|consensus
Probab=81.55 E-value=1.3 Score=45.03 Aligned_cols=41 Identities=29% Similarity=0.472 Sum_probs=33.7
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
++||..|=|||+|.+.|++++|+++ |...+..|-|.|-.+.
T Consensus 44 ~~Gr~sGeA~Ve~~seedv~~Alkk-dR~~mg~RYIEVf~~~ 84 (510)
T KOG4211|consen 44 RNGRPSGEAYVEFTSEEDVEKALKK-DRESMGHRYIEVFTAG 84 (510)
T ss_pred cCCCcCcceEEEeechHHHHHHHHh-hHHHhCCceEEEEccC
Confidence 4699999999999999999999985 6666777777766553
No 97
>PF03880 DbpA: DbpA RNA binding domain ; InterPro: IPR005580 This RNA binding domain is found at the C terminus of a number of DEAD helicase proteins [].; PDB: 2G0C_A 3MOJ_B.
Probab=80.80 E-value=1.3 Score=33.31 Aligned_cols=34 Identities=35% Similarity=0.473 Sum_probs=20.9
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecccceeeecc
Q psy14476 9 GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43 (303)
Q Consensus 9 GfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A 43 (303)
-|.||+-.. +.++.+++.|++..+.||+++|..|
T Consensus 41 ~~S~vev~~-~~a~~v~~~l~~~~~~gk~v~ve~A 74 (74)
T PF03880_consen 41 NFSFVEVPE-EVAEKVLEALNGKKIKGKKVRVERA 74 (74)
T ss_dssp S-EEEEE-T-T-HHHHHHHHTT--SSS----EEE-
T ss_pred eEEEEEECH-HHHHHHHHHhcCCCCCCeeEEEEEC
Confidence 588998754 5888999999999999999999865
No 98
>KOG0151|consensus
Probab=79.03 E-value=1.6 Score=46.31 Aligned_cols=40 Identities=25% Similarity=0.485 Sum_probs=36.6
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
.+-+-||||.|-+..+|++|+++|+|..+.+..+++.|++
T Consensus 216 ~r~r~cgfvafmnR~D~era~k~lqg~iv~~~e~K~gWgk 255 (877)
T KOG0151|consen 216 RRERNCGFVAFMNRADAERALKELQGIIVMEYEMKLGWGK 255 (877)
T ss_pred ccccccceeeehhhhhHHHHHHHhcceeeeeeeeeecccc
Confidence 3456799999999999999999999999999999999975
No 99
>KOG4660|consensus
Probab=75.59 E-value=1.7 Score=44.75 Aligned_cols=37 Identities=30% Similarity=0.438 Sum_probs=34.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceeccccee
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLY 39 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~ 39 (303)
+|-.++|..||+|-|..+|+.|+++|++.++.|+.|+
T Consensus 107 ~t~~~~~~~~v~FyDvR~A~~Alk~l~~~~~~~~~~k 143 (549)
T KOG4660|consen 107 ETPNKRGIVFVEFYDVRDAERALKALNRREIAGKRIK 143 (549)
T ss_pred cccccCceEEEEEeehHhHHHHHHHHHHHHhhhhhhc
Confidence 3456789999999999999999999999999999998
No 100
>PF08952 DUF1866: Domain of unknown function (DUF1866) ; InterPro: IPR015047 This domain, found in synaptojanin, has no known function. ; PDB: 1UFW_A 2DNR_A.
Probab=73.75 E-value=4 Score=35.29 Aligned_cols=37 Identities=19% Similarity=0.330 Sum_probs=29.5
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 9 GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 9 GfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
+--+|+|.+-+.|-+|+. |+|.+++|+.|.|..-.+.
T Consensus 71 ~~mwVTF~dg~sALaals-~dg~~v~g~~l~i~LKtpd 107 (146)
T PF08952_consen 71 DTMWVTFRDGQSALAALS-LDGIQVNGRTLKIRLKTPD 107 (146)
T ss_dssp TCEEEEESSCHHHHHHHH-GCCSEETTEEEEEEE----
T ss_pred CeEEEEECccHHHHHHHc-cCCcEECCEEEEEEeCCcc
Confidence 345899999999999986 6999999999999876543
No 101
>KOG1456|consensus
Probab=72.90 E-value=3.5 Score=40.85 Aligned_cols=37 Identities=32% Similarity=0.293 Sum_probs=32.1
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecc--cceeeecccch
Q psy14476 10 FGFVCFSSPEEATKAVTEMNGRIIGS--KPLYVALAQRK 46 (303)
Q Consensus 10 fgFV~F~s~e~A~~Ai~~lnG~~l~G--R~L~V~~A~~k 46 (303)
-+.|+|++.+.|++|-+.|||-.|.. -+|+|+||++.
T Consensus 161 QAmVEFdsv~~AqrAk~alNGADIYsGCCTLKIeyAkP~ 199 (494)
T KOG1456|consen 161 QAMVEFDSVEVAQRAKAALNGADIYSGCCTLKIEYAKPT 199 (494)
T ss_pred eeEEeechhHHHHHHHhhcccccccccceeEEEEecCcc
Confidence 47999999999999999999988763 47899999864
No 102
>KOG4212|consensus
Probab=70.97 E-value=5.2 Score=40.47 Aligned_cols=41 Identities=24% Similarity=0.511 Sum_probs=36.1
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeec
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVAL 42 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~ 42 (303)
|..|+|+||+.+.|+.+-+|-.||..+++.-+..++..|..
T Consensus 250 dKeG~s~G~~vi~y~hpveavqaIsml~~~g~~~~~~~~Rl 290 (608)
T KOG4212|consen 250 DKEGNSRGFAVIEYDHPVEAVQAISMLDRQGLFDRRMTVRL 290 (608)
T ss_pred ccccccCCeeEEEecchHHHHHHHHhhccCCCccccceeec
Confidence 66799999999999999999999999998777777766665
No 103
>PF11767 SET_assoc: Histone lysine methyltransferase SET associated; InterPro: IPR024636 The SET domain is a protein-protein interaction domain found in protein lysine methyltransferase enzymes. This entry represents a domain of unknown function which is associated with the SET domain and found in histone lysine methyltransferases [].
Probab=68.06 E-value=8.1 Score=28.94 Aligned_cols=29 Identities=14% Similarity=0.387 Sum_probs=25.8
Q ss_pred EEEeCCHHHHHHHHHHhCCceecccceee
Q psy14476 12 FVCFSSPEEATKAVTEMNGRIIGSKPLYV 40 (303)
Q Consensus 12 FV~F~s~e~A~~Ai~~lnG~~l~GR~L~V 40 (303)
||.|.+.+||+++....||..+.+-.|.+
T Consensus 37 YIvF~~~~Ea~rC~~~~~~~~~f~y~m~M 65 (66)
T PF11767_consen 37 YIVFNDSKEAERCFRAEDGTLFFTYRMQM 65 (66)
T ss_pred EEEECChHHHHHHHHhcCCCEEEEEEEEe
Confidence 89999999999999999999988766654
No 104
>KOG2193|consensus
Probab=65.83 E-value=5.1 Score=40.34 Aligned_cols=45 Identities=24% Similarity=0.364 Sum_probs=39.6
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCc-eecccceeeecccchHHHHHH
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGR-IIGSKPLYVALAQRKEDRKAH 52 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~-~l~GR~L~V~~A~~k~~r~~~ 52 (303)
-||+||.+.+..-|.+|++.++|+ ++.|+++.|.+..++..|...
T Consensus 37 ~gyafvd~pdq~wa~kaie~~sgk~elqGkr~e~~~sv~kkqrsrk 82 (584)
T KOG2193|consen 37 SGYAFVDCPDQQWANKAIETLSGKVELQGKRQEVEHSVPKKQRSRK 82 (584)
T ss_pred cceeeccCCchhhhhhhHHhhchhhhhcCceeeccchhhHHHHhhh
Confidence 489999999999999999999997 488999999999888766544
No 105
>KOG4660|consensus
Probab=63.59 E-value=12 Score=38.64 Aligned_cols=39 Identities=26% Similarity=0.422 Sum_probs=31.1
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceec---c-cceeeeccc
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIG---S-KPLYVALAQ 44 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~---G-R~L~V~~A~ 44 (303)
...|||||.|.+++++....+++||+.++ + |...+.||+
T Consensus 429 cNvGYAFINm~sp~ai~~F~kAFnGk~W~~FnS~Kia~itYAr 471 (549)
T KOG4660|consen 429 CNVGYAFINMTSPEAIIRFYKAFNGKKWEKFNSEKIASITYAR 471 (549)
T ss_pred cccceeEEeecCHHHHHHHHHHHcCCchhhhcceeeeeeehhh
Confidence 45799999999999999999999998754 3 344566664
No 106
>PF04847 Calcipressin: Calcipressin; InterPro: IPR006931 Calcipressin 1 negatively regulates calcineurin (IPR015757 from INTERPRO) by direct binding and is essential for the survival of T helper type 1 cells. Calcipressin 1 is a phosphoprotein that increases its capacity to inhibit calcineurin when phosphorylated at the FLISPP motif, and this phosphorylation also controls the half-life of calcipressin 1 by accelerating its degradation []. Calcineurin is a calcium-responsive enzyme that dephosphorylates the nuclear factor of activated T cells (NFAT). In so doing it promotes its nuclear translocation and uniquely links calcium signalling to transcriptional regulation []. Calcipressins are a family of proteins derived from three genes. Calcipressin 1 is also known as modulatory calcineurin-interacting protein 1 (MCIP1), Adapt78 and Down syndrome critical region 1 (DSCR1). Calcipressin 2 is variously known as MCIP2, ZAKI-4 and DSCR1-like 1. Calcipressin 3 is also called MCIP3 and DSCR1-like 2 []. DSCR1 (Adapt78) is associated with successful adaptation to oxidative stress and calcium stress as well as with diseases like Alzheimer's and Down syndrome. The DSCR1 (Adapt78) isoform 1 protein, calcipressin 1, inhibits calcineurin and protects against acute calcium-mediated stress damage, including transient oxidative stress []. Calcipressin 1 is encoded by DSCR1, a gene on human chromosome 21. Calcipressin 1 isoform 1 has an N-terminal coding region, which generates a new polypeptide of 252 amino acids. Endogenous calcipressin 1 exists as a complex together with the calcineurin A and B heterodimer []. ; GO: 0019722 calcium-mediated signaling; PDB: 1WEY_A.
Probab=62.48 E-value=8.5 Score=34.41 Aligned_cols=39 Identities=33% Similarity=0.295 Sum_probs=29.6
Q ss_pred cccEEEEEeCCHHHHHHHHHHhC--Cceecccceeeecccc
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMN--GRIIGSKPLYVALAQR 45 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~ln--G~~l~GR~L~V~~A~~ 45 (303)
|-+-..|.|.+.++|.+|...|+ +..+.|+.|+|.|++.
T Consensus 30 sFrRi~v~f~~~~~A~~~r~~l~~~~~~~~g~~l~~yf~~~ 70 (184)
T PF04847_consen 30 SFRRIRVVFESPESAQRARQLLHWDGTSFNGKRLRVYFGQP 70 (184)
T ss_dssp TTTEEEEE-SSTTHHHHHHHTST--TSEETTEE-EEE----
T ss_pred CCCEEEEEeCCHHHHHHHHHHhcccccccCCCceEEEEccc
Confidence 34556899999999999999999 9999999999999853
No 107
>KOG1190|consensus
Probab=60.90 E-value=11 Score=37.91 Aligned_cols=38 Identities=24% Similarity=0.336 Sum_probs=35.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
|--+.|.+.+...|.-|++.|+|..|.||+|+|.+.+.
T Consensus 335 kd~ALIQmsd~~qAqLA~~hL~g~~l~gk~lrvt~SKH 372 (492)
T KOG1190|consen 335 KDNALIQMSDGQQAQLAMEHLEGHKLYGKKLRVTLSKH 372 (492)
T ss_pred CcceeeeecchhHHHHHHHHhhcceecCceEEEeeccC
Confidence 35799999999999999999999999999999998764
No 108
>KOG2416|consensus
Probab=58.10 E-value=11 Score=39.51 Aligned_cols=42 Identities=24% Similarity=0.309 Sum_probs=35.7
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCcee---cccceeeecccchH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRII---GSKPLYVALAQRKE 47 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l---~GR~L~V~~A~~k~ 47 (303)
+-|-.|||.|.+.++|-+-+.+|||..+ +.|.|.++|+...+
T Consensus 479 kIKShCyV~yss~eEA~atr~AlhnV~WP~sNPK~L~adf~~~de 523 (718)
T KOG2416|consen 479 KIKSHCYVSYSSVEEAAATREALHNVQWPPSNPKHLIADFVRADE 523 (718)
T ss_pred HhhcceeEecccHHHHHHHHHHHhccccCCCCCceeEeeecchhH
Confidence 3466799999999999999999999986 57889999987543
No 109
>PF05172 Nup35_RRM: Nup53/35/40-type RNA recognition motif; InterPro: IPR007846 The MPPN (Mitotic PhosphoProtein N end) family is uncharacterised however it probably plays a role in the cell cycle because the family includes mitotic phosphoproteins O13026 from SWISSPROT []. This family also includes Q05166 from SWISSPROT a suppressor of thermosensitive mutations in the DNA polymerase delta gene, Pol III []. The conserved central region appears to be distantly related to the RNA-binding region RNP-1 (RNA recognition motif, IPR000504 from INTERPRO), suggesting an RNA binding function for this protein.; PDB: 1WWH_C 3P3D_A.
Probab=56.80 E-value=15 Score=29.60 Aligned_cols=36 Identities=19% Similarity=0.376 Sum_probs=28.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceeccccee-eeccc
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLY-VALAQ 44 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~-V~~A~ 44 (303)
..+-.|.|+++.+|.+|+.+ ||..|.|.-+. |.++.
T Consensus 54 ~NWi~I~Y~~~~~A~rAL~~-NG~i~~g~~mvGV~~~~ 90 (100)
T PF05172_consen 54 GNWIHITYDNPLSAQRALQK-NGTIFSGSLMVGVKPCD 90 (100)
T ss_dssp TTEEEEEESSHHHHHHHHTT-TTEEETTCEEEEEEE-H
T ss_pred CCEEEEECCCHHHHHHHHHh-CCeEEcCcEEEEEEEcH
Confidence 35778999999999999987 99999986544 66653
No 110
>KOG2068|consensus
Probab=53.32 E-value=4.6 Score=39.22 Aligned_cols=38 Identities=16% Similarity=0.368 Sum_probs=34.2
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 11 GFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 11 gFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
+||+|...|+|+.||...+|..++|+.|+..+...+..
T Consensus 128 ~yITy~~~eda~rci~~v~g~~~dg~~lka~~gttkyc 165 (327)
T KOG2068|consen 128 VYITYEEEEDADRCIDDVDGFVDDGRALKASLGTTKYC 165 (327)
T ss_pred ccccccchHhhhhHHHHhhhHHhhhhhhHHhhCCCcch
Confidence 79999999999999999999999999988888776643
No 111
>PF08777 RRM_3: RNA binding motif; InterPro: IPR014886 This domain is found in protein La which functions as an RNA chaperone during RNA polymerase III transcription, and can also stimulate translation initiation. It contains a five stranded beta sheet which forms an atypical RNA recognition motif []. ; PDB: 1OWX_A.
Probab=49.78 E-value=16 Score=29.54 Aligned_cols=39 Identities=28% Similarity=0.468 Sum_probs=23.1
Q ss_pred EEEEEeCCHHHHHHHHHHhCC-----ceecccceeeecccchHH
Q psy14476 10 FGFVCFSSPEEATKAVTEMNG-----RIIGSKPLYVALAQRKED 48 (303)
Q Consensus 10 fgFV~F~s~e~A~~Ai~~lnG-----~~l~GR~L~V~~A~~k~~ 48 (303)
-|||-|.++++|++|++.+.- ..|.+..+.+..-...++
T Consensus 39 ~g~VRf~~~~~A~~a~~~~~~~~~~~~~i~~~~~~~~vLeGeeE 82 (105)
T PF08777_consen 39 EGYVRFKTPEAAQKALEKLKEANDGKLKIKGKEVTLEVLEGEEE 82 (105)
T ss_dssp EEEEEESS---HHHHHHHHHHTTTS-B-TTSSSEEEE---HHHH
T ss_pred EEEEEECCcchHHHHHHHHHhccCCceEEcCceEEEEECCCHHH
Confidence 689999999999999987643 356666666665544433
No 112
>KOG1456|consensus
Probab=46.40 E-value=25 Score=35.03 Aligned_cols=37 Identities=22% Similarity=0.245 Sum_probs=34.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
-|-|.|+..+..+.++||..||+..+.|.+|.|+.++
T Consensus 325 ~gtamVemgd~~aver~v~hLnn~~lfG~kl~v~~Sk 361 (494)
T KOG1456|consen 325 PGTAMVEMGDAYAVERAVTHLNNIPLFGGKLNVCVSK 361 (494)
T ss_pred cceeEEEcCcHHHHHHHHHHhccCccccceEEEeecc
Confidence 3789999999999999999999999999999999764
No 113
>KOG0128|consensus
Probab=43.31 E-value=9.9 Score=41.19 Aligned_cols=38 Identities=26% Similarity=0.396 Sum_probs=29.4
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeee
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA 41 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~ 41 (303)
+++.||+|||.|.+++++.+||...+++.++...+.|+
T Consensus 705 ~~~~rG~~Y~~F~~~~~~~aaV~f~d~~~~gK~~v~i~ 742 (881)
T KOG0128|consen 705 EKRFRGKAYVEFLKPEHAGAAVAFRDSCFFGKISVAIS 742 (881)
T ss_pred ccccccceeeEeecCCchhhhhhhhhhhhhhhhhhhee
Confidence 57889999999999999999998766655554344443
No 114
>KOG1365|consensus
Probab=42.06 E-value=37 Score=34.00 Aligned_cols=42 Identities=21% Similarity=0.338 Sum_probs=34.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
..|+..|=+||.|.+.|+|..|....+.+...+|-|.|--+.
T Consensus 319 ~qGrPSGeAFIqm~nae~a~aaaqk~hk~~mk~RYiEvfp~S 360 (508)
T KOG1365|consen 319 GQGRPSGEAFIQMRNAERARAAAQKCHKKLMKSRYIEVFPCS 360 (508)
T ss_pred CCCCcChhhhhhhhhhHHHHHHHHHHHHhhcccceEEEeecc
Confidence 458888999999999999999999887777767777766554
No 115
>KOG4307|consensus
Probab=36.29 E-value=42 Score=36.11 Aligned_cols=40 Identities=28% Similarity=0.414 Sum_probs=32.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
-|=+||.|++-|||.-|+.+ ++.+|.|-.+++-+..+.+.
T Consensus 40 ~GeaFI~FsTDeDARlaM~k-dr~~i~g~~VrLlLSSksEm 79 (944)
T KOG4307|consen 40 EGEAFIGFSTDEDARLAMTK-DRLMIHGAEVRLLLSSKSEM 79 (944)
T ss_pred ccceEEEecccchhhhhhhh-cccceecceEEEEeccHHHH
Confidence 57899999999999999986 88889988777766655443
No 116
>PF02714 DUF221: Domain of unknown function DUF221; InterPro: IPR003864 This domain is found in a family of hypothetical transmembrane proteins none of which have any known function, the aligned region is at 538 residues at maximum length.; GO: 0016020 membrane
Probab=34.71 E-value=35 Score=32.17 Aligned_cols=36 Identities=25% Similarity=0.322 Sum_probs=25.4
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 11 GFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 11 gFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
|||+|++..+|+.|++.+.... .+.+.|..|-+.+|
T Consensus 1 aFVtF~~~~~a~~~~q~~~~~~--~~~~~v~~APeP~D 36 (325)
T PF02714_consen 1 AFVTFNSQKSAQIALQLLLSKR--PNSWRVSPAPEPDD 36 (325)
T ss_pred CEEEECCHHHHHHHHHHHhcCC--CCCceEeeCCCccc
Confidence 7999999999999998644433 34556666654433
No 117
>KOG1365|consensus
Probab=34.49 E-value=22 Score=35.57 Aligned_cols=38 Identities=32% Similarity=0.481 Sum_probs=29.4
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeee
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA 41 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~ 41 (303)
.+||.-|=+||.|..+++|+.|+.+ |...|+-|-|.+-
T Consensus 201 pdgrpTGdAFvlfa~ee~aq~aL~k-hrq~iGqRYIElF 238 (508)
T KOG1365|consen 201 PDGRPTGDAFVLFACEEDAQFALRK-HRQNIGQRYIELF 238 (508)
T ss_pred CCCCcccceEEEecCHHHHHHHHHH-HHHHHhHHHHHHH
Confidence 4789999999999999999999986 5455555544443
No 118
>KOG4019|consensus
Probab=34.41 E-value=42 Score=30.25 Aligned_cols=40 Identities=30% Similarity=0.290 Sum_probs=32.9
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceeccc-ceeeecccc
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSK-PLYVALAQR 45 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR-~L~V~~A~~ 45 (303)
+|.++--|.|.+++.|.+|...++...|.|+ .++.-++++
T Consensus 49 rsfrrvRi~f~~p~~a~~a~i~~~~~~f~~~~~~k~yfaQ~ 89 (193)
T KOG4019|consen 49 RSFRRVRINFSNPEAAADARIKLHSTSFNGKNELKLYFAQP 89 (193)
T ss_pred HhhceeEEeccChhHHHHHHHHhhhcccCCCceEEEEEccC
Confidence 3556667799999999999999999999998 677777764
No 119
>PF14605 Nup35_RRM_2: Nup53/35/40-type RNA recognition motif
Probab=31.45 E-value=39 Score=23.77 Aligned_cols=19 Identities=26% Similarity=0.475 Sum_probs=16.3
Q ss_pred cccEEEEEeCCHHHHHHHH
Q psy14476 7 SKGFGFVCFSSPEEATKAV 25 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai 25 (303)
.+-+.||+|.+..+|++|+
T Consensus 35 ~~~~~~l~y~~~~~ae~Al 53 (53)
T PF14605_consen 35 STNWMYLKYKSRKDAEKAL 53 (53)
T ss_pred CCcEEEEEECCHHHHHhhC
Confidence 3458999999999999985
No 120
>KOG4285|consensus
Probab=27.00 E-value=78 Score=30.79 Aligned_cols=38 Identities=29% Similarity=0.351 Sum_probs=31.6
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecccce-eeecccchHH
Q psy14476 10 FGFVCFSSPEEATKAVTEMNGRIIGSKPL-YVALAQRKED 48 (303)
Q Consensus 10 fgFV~F~s~e~A~~Ai~~lnG~~l~GR~L-~V~~A~~k~~ 48 (303)
|-+|.|.+.-+|++||.. ||+.|+|-.+ -|..+..|..
T Consensus 234 wMhirYssr~~A~KALsk-ng~ii~g~vmiGVkpCtDksv 272 (350)
T KOG4285|consen 234 WMHIRYSSRTHAQKALSK-NGTIIDGDVMIGVKPCTDKSV 272 (350)
T ss_pred eEEEEecchhHHHHhhhh-cCeeeccceEEeeeecCCHHH
Confidence 779999999999999987 9999998764 4777776643
No 121
>PF07647 SAM_2: SAM domain (Sterile alpha motif); InterPro: IPR011510 The sterile alpha motif (SAM) domain is a putative protein interaction module present in a wide variety of proteins [] involved in many biological processes. The SAM domain that spreads over around 70 residues is found in diverse eukaryotic organisms []. SAM domains have been shown to homo- and hetero-oligomerise, forming multiple self-association architectures and also binding to various non-SAM domain-containing proteins [], nevertheless with a low affinity constant []. SAM domains also appear to possess the ability to bind RNA []. Smaug, a protein that helps to establish a morphogen gradient in Drosophila embryos by repressing the translation of nanos (nos) mRNA, binds to the 3' untranslated region (UTR) of nos mRNA via two similar hairpin structures. The 3D crystal structure of the Smaug RNA-binding region shows a cluster of positively charged residues on the Smaug-SAM domain, which could be the RNA-binding surface. This electropositive potential is unique among all previously determined SAM-domain structures and is conserved among Smaug-SAM homologs. These results suggest that the SAM domain might have a primary role in RNA binding. Structural analyses show that the SAM domain is arranged in a small five-helix bundle with two large interfaces []. In the case of the SAM domain of EphB2, each of these interfaces is able to form dimers. The presence of these two distinct intermonomers binding surface suggest that SAM could form extended polymeric structures []. This entry represents a second domain related to the SAM domain. ; GO: 0005515 protein binding; PDB: 1B0X_A 1X9X_B 1OW5_A 1V38_A 3BS7_A 3BS5_A 3TAD_A 3TAC_B 2K60_A 2DL0_A ....
Probab=26.15 E-value=1.6e+02 Score=20.72 Aligned_cols=38 Identities=24% Similarity=0.273 Sum_probs=28.5
Q ss_pred CCCchh--hcccCChHHHHHhhCChHHHHHHHHHHHHHHH
Q psy14476 254 AGKITG--MLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291 (303)
Q Consensus 254 A~KITG--MlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~ 291 (303)
...|+| .|+.++.++|..|==....-+.||-.|+.-|+
T Consensus 27 ~~~i~g~~~L~~l~~~~L~~lGI~~~~~r~kll~~i~~Lk 66 (66)
T PF07647_consen 27 ENGIDGLEDLLQLTEEDLKELGITNLGHRRKLLSAIQELK 66 (66)
T ss_dssp HTTCSHHHHHTTSCHHHHHHTTTTHHHHHHHHHHHHHHHH
T ss_pred HcCCcHHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHcC
Confidence 357888 67889999998775555557788888887764
No 122
>PF11897 DUF3417: Protein of unknown function (DUF3417); InterPro: IPR024517 This domain of unknown function is found at the N terminus of members of the glycogen phosphorylase family.
Probab=25.16 E-value=1.1e+02 Score=25.24 Aligned_cols=42 Identities=12% Similarity=0.184 Sum_probs=35.4
Q ss_pred CCCchhhcccCChHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q psy14476 254 AGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAK 296 (303)
Q Consensus 254 A~KITGMlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~~~~ 296 (303)
-.--.-||.+++.+.|-.+.+|++ +..+++++++-++.+-..
T Consensus 48 ~~NPv~~L~~vs~~rL~~la~D~~-fl~~~~~v~~~f~~Ym~~ 89 (118)
T PF11897_consen 48 GHNPVRLLQEVSQERLEELAQDPE-FLARYDRVYARFEEYMSQ 89 (118)
T ss_pred CCCHHHHHHHCCHHHHHHHhCCHH-HHHHHHHHHHHHHHHHcC
Confidence 344567999999999999998887 778999999999988765
No 123
>KOG3152|consensus
Probab=23.77 E-value=19 Score=34.03 Aligned_cols=27 Identities=33% Similarity=0.437 Sum_probs=25.1
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecccc
Q psy14476 11 GFVCFSSPEEATKAVTEMNGRIIGSKP 37 (303)
Q Consensus 11 gFV~F~s~e~A~~Ai~~lnG~~l~GR~ 37 (303)
|+|+|.+...|......||+..|+|+.
T Consensus 131 GWvEF~~KrvAK~iAe~Lnn~~Iggkk 157 (278)
T KOG3152|consen 131 GWVEFISKRVAKRIAELLNNTPIGGKK 157 (278)
T ss_pred HHHHHHHHHHHHHHHHHhCCCccCCCC
Confidence 689999999999999999999999974
No 124
>KOG1229|consensus
Probab=23.71 E-value=65 Score=33.08 Aligned_cols=40 Identities=18% Similarity=0.369 Sum_probs=33.3
Q ss_pred CCchhhcccCChHHHHHhhCC-----hHHHHHHHHHHHHHHHHHH
Q psy14476 255 GKITGMLLEIDNAELLYMLEH-----NESLKSKVEEAVAVLQAHQ 294 (303)
Q Consensus 255 ~KITGMlLe~~~~ell~ll~~-----~~~L~~kv~eA~~vl~~~~ 294 (303)
.||--|-+|-+.+|+|+||.+ +-.-.+.|+.|+++|..|.
T Consensus 330 akihs~~IEAPIseViniinaaq~ns~~~~Aeaid~aleiLrs~E 374 (775)
T KOG1229|consen 330 AKIHSGGIEAPISEVINIINAAQANSDGEPAEAIDDALEILRSHE 374 (775)
T ss_pred hhhhcCcccccHHHHHHHHHHHHhcCCCCHHHHHHHHHHHHhhcc
Confidence 577788899999999999965 4446788999999999864
No 125
>PF07235 DUF1427: Protein of unknown function (DUF1427); InterPro: IPR009872 This family consists of several bacterial proteins of around 100 residues in length. The function of this family is unknown.
Probab=23.64 E-value=37 Score=27.02 Aligned_cols=29 Identities=31% Similarity=0.526 Sum_probs=21.9
Q ss_pred HHhhhccchhhhhhh-----------CCCCCCCchhhccc
Q psy14476 235 KQMLGERLFPLIQRM-----------YPELAGKITGMLLE 263 (303)
Q Consensus 235 k~~lGe~ly~~v~~~-----------~p~~A~KITGMlLe 263 (303)
=-++||+++|.|... +.+.+.+|+|.|=.
T Consensus 37 Gi~~Ge~~~p~~~~~~~~~~~~~a~~~~~c~~hv~G~lp~ 76 (90)
T PF07235_consen 37 GILLGEQAIPLVRRLLRGHPLTAAWFHAECVPHVFGQLPG 76 (90)
T ss_pred HHhcccchhHHHHHHhcCCchhhhhhhccccccccCCCCC
Confidence 347899999999876 33568888888754
No 126
>KOG0077|consensus
Probab=22.01 E-value=42 Score=30.09 Aligned_cols=31 Identities=39% Similarity=0.544 Sum_probs=21.4
Q ss_pred HHhhhccchhhhhhh---CCCCCCCchhhcccCChHHHHHhhCChH
Q psy14476 235 KQMLGERLFPLIQRM---YPELAGKITGMLLEIDNAELLYMLEHNE 277 (303)
Q Consensus 235 k~~lGe~ly~~v~~~---~p~~A~KITGMlLe~~~~ell~ll~~~~ 277 (303)
-++|| ||-+-..+ .=|+|||-| |||||.|+-
T Consensus 11 Lq~Lg--L~kK~gKllFlGLDNAGKTT----------LLHMLKdDr 44 (193)
T KOG0077|consen 11 LQFLG--LYKKFGKLLFLGLDNAGKTT----------LLHMLKDDR 44 (193)
T ss_pred HHHHH--HhccCceEEEEeecCCchhh----------HHHHHcccc
Confidence 46777 77666554 456777755 889998864
No 127
>KOG2318|consensus
Probab=21.18 E-value=1e+02 Score=32.47 Aligned_cols=32 Identities=22% Similarity=0.163 Sum_probs=27.3
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecccceeee
Q psy14476 10 FGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA 41 (303)
Q Consensus 10 fgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~ 41 (303)
||.|+|++.+.|.+..+.|+|..+..--..++
T Consensus 270 yAVvecDsi~tA~~vYe~CDG~EfEsS~~~~D 301 (650)
T KOG2318|consen 270 YAVVECDSIETAKAVYEECDGIEFESSANKLD 301 (650)
T ss_pred EEEEEecCchHHHHHHHhcCcceeccccceee
Confidence 78999999999999999999999886544444
No 128
>PF08206 OB_RNB: Ribonuclease B OB domain; InterPro: IPR013223 This domain includes the N-terminal OB domain found in ribonuclease B proteins in one or two copies.; PDB: 2ID0_D 2IX1_A 2IX0_A.
Probab=20.70 E-value=65 Score=22.93 Aligned_cols=12 Identities=50% Similarity=0.858 Sum_probs=8.8
Q ss_pred CcccEEEEEeCC
Q psy14476 6 RSKGFGFVCFSS 17 (303)
Q Consensus 6 kSkGfgFV~F~s 17 (303)
.++|||||..++
T Consensus 6 ~~~GfGFv~~~~ 17 (58)
T PF08206_consen 6 HPKGFGFVIPDD 17 (58)
T ss_dssp -SSS-EEEEECT
T ss_pred EcCCCEEEEECC
Confidence 478999999886
No 129
>KOG4307|consensus
Probab=20.53 E-value=75 Score=34.29 Aligned_cols=43 Identities=16% Similarity=0.132 Sum_probs=34.3
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
.+++-++-|||.|..++++.+|...-+-+.++.|.|+|+-...
T Consensus 471 P~~~~~~~afv~F~~~~a~~~a~~~~~k~y~G~r~irv~si~~ 513 (944)
T KOG4307|consen 471 PTDLLRPAAFVAFIHPTAPLTASSVKTKFYPGHRIIRVDSIAD 513 (944)
T ss_pred CcccccchhhheeccccccchhhhcccccccCceEEEeechhh
Confidence 5788899999999999999988876555667778888875443
No 130
>KOG1924|consensus
Probab=20.42 E-value=6e+02 Score=28.23 Aligned_cols=82 Identities=18% Similarity=0.306 Sum_probs=0.0
Q ss_pred CCCCCCCccc--CCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCCcccCCCCCCCCCcCCCCCCCCC
Q psy14476 84 PTLPQPQRFY--GPTQMTQIRPQPRWAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPR 161 (303)
Q Consensus 84 ~~lp~~~~~~--~~~~~~~~rp~~~~~~~~~~~p~~~~~~~~~~~p~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~ 161 (303)
.++|.++..- |....+.++|.|+-++.+ +.+++-+++|++..+|.+++
T Consensus 525 ~~iP~PP~~pp~gG~g~pppPppPPlpgga------g~PPPPpplPg~aG~PPpPp------------------------ 574 (1102)
T KOG1924|consen 525 GGIPPPPPLPPTGGTGPPPPPPPPPLPGGA------GPPPPPPPLPGIAGGPPPPP------------------------ 574 (1102)
T ss_pred CCCCCCCCCCCCCCCCCCCCCCCCCCCCCC------CCCccCCCCCcccCCCCccC------------------------
Q ss_pred CCCCCCCCCCCCcCCCCCCCCCCCCCCCCCCCCCCccccCCCCC
Q psy14476 162 GGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQP 205 (303)
Q Consensus 162 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~~~~~~~~~p 205 (303)
...+++++++.+++..+ -.++++.+++.++.|.|
T Consensus 575 -pppg~~gppPPPpp~g~---------~Gg~ppPP~~gm~pmaP 608 (1102)
T KOG1924|consen 575 -PPPGGGGPPPPPPPGGF---------LGGPPPPPPPGMFPMAP 608 (1102)
T ss_pred -CCCCCCCCCCcCCCCCC---------CCCCCCCCCCCcccccc
No 131
>PTZ00096 40S ribosomal protein S15; Provisional
Probab=20.42 E-value=1.1e+02 Score=26.49 Aligned_cols=33 Identities=24% Similarity=0.328 Sum_probs=22.9
Q ss_pred CCchhhcccCChHHHHHhhCC-------------hHHHHHHHHHHH
Q psy14476 255 GKITGMLLEIDNAELLYMLEH-------------NESLKSKVEEAV 287 (303)
Q Consensus 255 ~KITGMlLe~~~~ell~ll~~-------------~~~L~~kv~eA~ 287 (303)
|+=---||+|+.+||+.||.+ +..|-.||.+|-
T Consensus 19 G~~l~~L~~m~~~e~~~L~~aR~RR~~~RGl~~~~~~LlkKirk~~ 64 (143)
T PTZ00096 19 GVELEKLLALPEEELVELFRARQRRRINRGIKRKHPTLLKKLRKAK 64 (143)
T ss_pred cCCHHHHHcCCHHHHHHHcCcccccccccCCCHHHHHHHHHHHHHh
Confidence 444456888999999998875 345666666653
No 132
>KOG4715|consensus
Probab=20.11 E-value=82 Score=30.81 Aligned_cols=52 Identities=25% Similarity=0.404 Sum_probs=40.3
Q ss_pred ccchhhhhhhCCCC----CC-CchhhcccCChHHHHHhhCChHHHHHHHHHHHHHHH
Q psy14476 240 ERLFPLIQRMYPEL----AG-KITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291 (303)
Q Consensus 240 e~ly~~v~~~~p~~----A~-KITGMlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~ 291 (303)
.++|+.|...+|++ -| +|-||-|++...|--++|..=|+=+.--+|-|..++
T Consensus 77 rkvWd~VkA~nPe~kLWeiGK~Ig~mW~dLpd~EK~ey~~EYeaEKieY~~smkayh 133 (410)
T KOG4715|consen 77 RKVWDQVKASNPELKLWEIGKIIGGMWLDLPDEEKQEYLNEYEAEKIEYNESMKAYH 133 (410)
T ss_pred hhhhhhhhccCcchHHHHHHHHHHHHHhhCcchHHHHHHHHHHHHHHHHHHHHHHhh
Confidence 46899999999988 44 556799999999998888777766666666666554
No 133
>PF03532 OMS28_porin: OMS28 porin; InterPro: IPR000839 The outer membrane-spanning (Oms) proteins of Borrelia burgdorferi have been isolated and their porin activities characterised; 0.6-nS porin activity was found to reside in a 28kDa protein, designated Oms28 []. The gene sequence of oms28 was found to encode a 257-amino-acid precursor protein with a putative 24-amino-acid leader peptidase I signal sequence []. The Oms28 protein partly fractionated to the outer membrane, and was characterised by an average single-channel conductance of 1.1 nS in a planar lipid bilayer assay, confirming Oms28 to be a porin [].
Probab=20.02 E-value=1.2e+02 Score=27.20 Aligned_cols=57 Identities=26% Similarity=0.418 Sum_probs=37.8
Q ss_pred ChHHHH--Hhhhccchhhhhhh----CCCCCCCchhhcccCChHHHH-------HhhCChHHHHHHHHHHHHHHHH
Q psy14476 230 QPQEQK--QMLGERLFPLIQRM----YPELAGKITGMLLEIDNAELL-------YMLEHNESLKSKVEEAVAVLQA 292 (303)
Q Consensus 230 ~~~~qk--~~lGe~ly~~v~~~----~p~~A~KITGMlLe~~~~ell-------~ll~~~~~L~~kv~eA~~vl~~ 292 (303)
-.|.|| .+-||..|-+-.++ .|+. --||+...|+. .|+.|+.+|.+-++||..||.-
T Consensus 140 ~qetqkavsva~ea~fliekqimsnkspnn------keleltkeef~kve~vketlmase~aldet~qeaqkvln~ 209 (253)
T PF03532_consen 140 VQETQKAVSVAGEAMFLIEKQIMSNKSPNN------KELELTKEEFAKVEQVKETLMASERALDETVQEAQKVLNI 209 (253)
T ss_pred HHHHHHHHhhhhhhHHHHHHHHHcCCCCCc------cchhccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHH
Confidence 334444 34677776443333 3332 23777777765 4678999999999999999973
Done!