Query psy14476
Match_columns 303
No_of_seqs 350 out of 1462
Neff 6.0
Searched_HMMs 29240
Date Fri Aug 16 20:48:53 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14476.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14476hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g9l_A Polyadenylate-binding p 100.0 4.9E-33 1.7E-37 234.6 8.1 87 212-298 44-130 (144)
2 3kuj_A Polyadenylate-binding p 100.0 3.8E-33 1.3E-37 217.6 5.7 84 219-302 5-88 (88)
3 1nmr_A Poly(A)-binding protein 100.0 1E-33 3.5E-38 219.2 0.1 80 215-294 4-83 (85)
4 1ifw_A Polyadenylate-binding p 100.0 4.3E-33 1.5E-37 218.6 2.4 81 219-299 5-87 (92)
5 2dyd_A Poly(A)-binding protein 100.0 1.3E-32 4.4E-37 213.0 -1.0 75 221-295 9-83 (85)
6 1i2t_A HYD protein; four alpha 99.9 6.1E-29 2.1E-33 181.6 2.9 60 234-293 1-60 (61)
7 3s8s_A Histone-lysine N-methyl 99.1 1.8E-10 6.2E-15 92.2 6.9 49 3-51 43-91 (110)
8 4f25_A Polyadenylate-binding p 99.0 9.8E-11 3.3E-15 93.9 3.8 48 4-51 41-88 (115)
9 4fxv_A ELAV-like protein 1; RN 99.0 3.1E-10 1.1E-14 89.0 5.4 43 3-45 56-98 (99)
10 3ns6_A Eukaryotic translation 98.9 6.9E-10 2.4E-14 86.7 4.9 46 3-48 49-95 (100)
11 3p5t_L Cleavage and polyadenyl 98.9 4.1E-10 1.4E-14 86.0 3.4 46 3-48 40-85 (90)
12 3md1_A Nuclear and cytoplasmic 98.9 1.2E-09 4E-14 81.5 5.2 45 3-47 38-82 (83)
13 2a3j_A U1 small nuclear ribonu 98.9 8.6E-10 2.9E-14 90.9 4.8 49 3-51 67-115 (127)
14 2lkz_A RNA-binding protein 5; 98.9 7.7E-10 2.6E-14 86.7 4.1 43 3-45 48-94 (95)
15 1jmt_A Splicing factor U2AF 35 98.9 1.3E-09 4.6E-14 86.5 5.3 42 2-43 62-103 (104)
16 3bs9_A Nucleolysin TIA-1 isofo 98.9 1.5E-09 5.1E-14 81.6 5.3 44 3-46 43-86 (87)
17 1x5t_A Splicing factor 3B subu 98.9 9.5E-10 3.2E-14 84.3 4.2 46 3-48 43-88 (96)
18 2lxi_A RNA-binding protein 10; 98.9 8.5E-10 2.9E-14 85.0 3.9 45 3-47 39-84 (91)
19 2fc8_A NCL protein; structure 98.9 9.3E-10 3.2E-14 85.4 4.0 46 3-48 49-94 (102)
20 2do4_A Squamous cell carcinoma 98.9 8.8E-10 3E-14 85.4 3.5 46 2-47 52-97 (100)
21 3n9u_C Cleavage and polyadenyl 98.9 2.6E-09 8.9E-14 90.7 6.7 47 3-49 94-140 (156)
22 2dgw_A Probable RNA-binding pr 98.9 1.3E-09 4.5E-14 83.0 4.4 45 2-47 44-88 (91)
23 2cpe_A RNA-binding protein EWS 98.9 1.3E-09 4.4E-14 86.3 4.4 46 3-48 60-105 (113)
24 2fc9_A NCL protein; structure 98.9 1.9E-09 6.7E-14 83.6 5.2 46 2-47 47-92 (101)
25 1whw_A Hypothetical protein ri 98.9 1.7E-09 5.9E-14 83.4 4.7 45 4-48 46-90 (99)
26 1p1t_A Cleavage stimulation fa 98.8 2.7E-09 9.3E-14 82.9 5.4 49 3-51 45-93 (104)
27 2x1f_A MRNA 3'-END-processing 98.8 2.9E-09 1E-13 81.9 5.4 47 3-49 39-85 (96)
28 2cqp_A RNA-binding protein 12; 98.8 3E-09 1E-13 81.9 5.4 44 3-46 52-95 (98)
29 2wbr_A GW182, gawky, LD47780P; 98.8 2.6E-09 8.7E-14 83.5 4.9 39 6-44 41-79 (89)
30 2cpy_A RNA-binding protein 12; 98.8 2.6E-09 8.7E-14 85.3 5.1 49 1-50 50-98 (114)
31 1oo0_B CG8781-PA, drosophila Y 98.8 1.9E-09 6.3E-14 84.9 4.2 46 3-48 63-108 (110)
32 2cpi_A CCR4-NOT transcription 98.8 3.2E-09 1.1E-13 84.3 5.6 44 4-47 59-102 (111)
33 2dnn_A RNA-binding protein 12; 98.8 4.1E-09 1.4E-13 84.6 6.2 45 1-46 49-93 (109)
34 2dhg_A TRNA selenocysteine ass 98.8 1.3E-09 4.4E-14 84.9 2.9 46 2-47 45-91 (104)
35 2d9p_A Polyadenylate-binding p 98.8 1.6E-09 5.5E-14 84.3 3.4 45 4-48 51-95 (103)
36 2fy1_A RNA-binding motif prote 98.8 3.1E-09 1.1E-13 85.3 5.2 45 2-46 42-86 (116)
37 2dnz_A Probable RNA-binding pr 98.8 3.4E-09 1.2E-13 81.0 5.1 45 3-47 42-86 (95)
38 2dnh_A Bruno-like 5, RNA bindi 98.8 1.7E-09 5.8E-14 84.4 3.4 48 2-49 50-100 (105)
39 2la6_A RNA-binding protein FUS 98.8 3.2E-09 1.1E-13 82.1 4.9 42 3-44 58-99 (99)
40 2j76_E EIF-4B, EIF4B, eukaryot 98.8 2.1E-09 7.3E-14 83.7 3.8 44 3-47 56-99 (100)
41 2cqb_A Peptidyl-prolyl CIS-tra 98.8 3.3E-09 1.1E-13 82.3 4.7 45 3-47 49-93 (102)
42 2pe8_A Splicing factor 45; RRM 98.8 5E-09 1.7E-13 83.4 5.8 42 4-45 52-93 (105)
43 2ywk_A Putative RNA-binding pr 98.8 3.5E-09 1.2E-13 81.0 4.7 44 2-45 51-94 (95)
44 2cpz_A CUG triplet repeat RNA- 98.8 2.5E-09 8.5E-14 85.0 3.9 46 3-48 62-107 (115)
45 3mdf_A Peptidyl-prolyl CIS-tra 98.8 4.5E-09 1.5E-13 78.6 4.9 42 3-44 44-85 (85)
46 1p27_B RNA-binding protein 8A; 98.8 2.6E-09 8.8E-14 83.4 3.7 45 3-47 60-104 (106)
47 1wel_A RNA-binding protein 12; 98.8 3.7E-09 1.3E-13 85.5 4.7 46 2-48 61-106 (124)
48 1fj7_A Nucleolin RBD1, protein 98.8 1.6E-09 5.6E-14 84.0 2.5 45 3-48 53-97 (101)
49 3ulh_A THO complex subunit 4; 98.8 4.6E-09 1.6E-13 82.1 5.1 43 2-44 64-106 (107)
50 2lmi_A GRSF-1, G-rich sequence 98.8 3.8E-09 1.3E-13 83.4 4.6 45 2-47 49-93 (107)
51 2ek1_A RNA-binding protein 12; 98.8 6.1E-09 2.1E-13 79.6 5.5 43 3-45 52-94 (95)
52 2cq0_A Eukaryotic translation 98.8 5.3E-09 1.8E-13 81.4 5.2 45 3-47 52-96 (103)
53 2nlw_A Eukaryotic translation 98.8 2.1E-09 7.1E-14 84.6 2.7 44 3-46 56-100 (105)
54 2jrs_A RNA-binding protein 39; 98.8 3.2E-09 1.1E-13 84.2 3.8 45 3-47 63-107 (108)
55 2db1_A Heterogeneous nuclear r 98.8 4.4E-09 1.5E-13 84.7 4.6 45 2-47 55-99 (118)
56 1nu4_A U1A RNA binding domain; 98.8 1.9E-09 6.5E-14 82.7 2.4 47 4-50 47-93 (97)
57 2cpx_A Hypothetical protein FL 98.8 3.1E-09 1.1E-13 84.2 3.6 44 4-47 63-106 (115)
58 1x5u_A Splicing factor 3B subu 98.8 4.6E-09 1.6E-13 81.8 4.5 44 4-47 53-96 (105)
59 2kt5_A RNA and export factor-b 98.8 6.2E-09 2.1E-13 83.9 5.4 45 2-46 70-114 (124)
60 2e5h_A Zinc finger CCHC-type a 98.8 6.5E-09 2.2E-13 79.3 5.0 42 3-44 53-94 (94)
61 1x5s_A Cold-inducible RNA-bind 98.8 4.2E-09 1.4E-13 81.7 4.0 45 3-47 49-93 (102)
62 2dgv_A HnRNP M, heterogeneous 98.8 4.3E-09 1.5E-13 80.0 3.9 45 3-47 43-87 (92)
63 2cqc_A Arginine/serine-rich sp 98.8 7.1E-09 2.4E-13 79.0 5.2 43 3-45 52-94 (95)
64 1fjc_A Nucleolin RBD2, protein 98.8 4.5E-09 1.5E-13 80.6 4.0 45 3-47 48-92 (96)
65 2dgo_A Cytotoxic granule-assoc 98.8 7E-09 2.4E-13 82.2 5.3 45 3-47 52-96 (115)
66 2do0_A HnRNP M, heterogeneous 98.8 6.8E-09 2.3E-13 82.0 5.1 45 2-46 50-94 (114)
67 2m2b_A RNA-binding protein 10; 98.8 2.8E-09 9.5E-14 87.1 2.9 44 2-46 60-108 (131)
68 2cph_A RNA binding motif prote 98.7 7.1E-09 2.4E-13 80.9 5.0 45 3-47 53-98 (107)
69 2hgl_A HNRPF protein, heteroge 98.7 4.2E-09 1.4E-13 87.8 3.9 45 2-47 82-126 (136)
70 4f02_A Polyadenylate-binding p 98.7 5.9E-09 2E-13 91.5 5.0 50 4-53 139-188 (213)
71 2cpf_A RNA binding motif prote 98.7 5.2E-09 1.8E-13 80.6 4.1 44 4-47 46-89 (98)
72 2krb_A Eukaryotic translation 98.7 3.6E-09 1.2E-13 79.0 3.0 39 3-41 42-81 (81)
73 2dgs_A DAZ-associated protein 98.7 7.7E-09 2.6E-13 79.9 4.9 45 3-48 47-91 (99)
74 2dng_A Eukaryotic translation 98.7 7.4E-09 2.5E-13 80.7 4.6 44 3-47 51-94 (103)
75 1u6f_A Tcubp1, RNA-binding pro 98.7 4.1E-09 1.4E-13 86.3 3.2 46 3-48 79-124 (139)
76 2kxn_B Transformer-2 protein h 98.7 5.1E-09 1.8E-13 85.9 3.7 45 3-47 83-127 (129)
77 1wg5_A Heterogeneous nuclear r 98.7 6.5E-09 2.2E-13 81.6 4.2 45 2-47 51-95 (104)
78 3smz_A Protein raver-1, ribonu 98.7 1E-08 3.6E-13 92.9 6.1 57 2-58 220-276 (284)
79 2dis_A Unnamed protein product 98.7 6.8E-09 2.3E-13 81.4 4.1 46 3-48 47-94 (109)
80 2khc_A Testis-specific RNP-typ 98.7 6.6E-09 2.2E-13 82.8 4.1 42 3-44 77-118 (118)
81 1wez_A HnRNP H', FTP-3, hetero 98.7 4.2E-09 1.4E-13 83.0 2.8 44 2-46 49-92 (102)
82 3egn_A RNA-binding protein 40; 98.7 6.5E-09 2.2E-13 85.8 4.1 47 3-49 87-133 (143)
83 2dnm_A SRP46 splicing factor; 98.7 5.7E-09 2E-13 81.2 3.5 44 3-46 50-93 (103)
84 1x4h_A RNA-binding protein 28; 98.7 6.9E-09 2.4E-13 81.5 4.0 46 3-48 52-103 (111)
85 2cq4_A RNA binding motif prote 98.7 6.3E-09 2.1E-13 82.5 3.7 45 4-49 63-107 (114)
86 2jvr_A Nucleolar protein 3; RN 98.7 1E-08 3.5E-13 82.6 4.9 43 5-47 64-106 (111)
87 1s79_A Lupus LA protein; RRM, 98.7 1E-08 3.5E-13 81.1 4.8 45 2-47 46-90 (103)
88 2lcw_A RNA-binding protein FUS 98.2 1.5E-09 5.3E-14 86.5 0.0 47 3-49 52-98 (116)
89 4a8x_A RNA-binding protein wit 98.7 4.3E-09 1.5E-13 79.0 2.4 42 6-47 45-86 (88)
90 2ki2_A SS-DNA binding protein 98.7 6.9E-09 2.4E-13 78.6 3.6 44 3-47 38-81 (90)
91 2e5j_A Methenyltetrahydrofolat 98.7 6.9E-09 2.4E-13 80.1 3.6 44 4-47 52-95 (97)
92 2kn4_A Immunoglobulin G-bindin 98.7 1.1E-08 3.7E-13 85.4 5.0 45 3-47 107-151 (158)
93 3ue2_A Poly(U)-binding-splicin 98.7 1.1E-08 3.8E-13 83.3 4.9 43 3-45 66-108 (118)
94 1wi8_A EIF-4B, eukaryotic tran 98.7 7.1E-09 2.4E-13 80.9 3.6 43 5-48 54-96 (104)
95 2mss_A Protein (musashi1); RNA 98.7 9.1E-09 3.1E-13 75.3 3.9 40 3-43 36-75 (75)
96 2div_A TRNA selenocysteine ass 98.7 1.2E-08 4E-13 78.7 4.7 44 3-46 47-94 (99)
97 2dgp_A Bruno-like 4, RNA bindi 98.7 8.7E-09 3E-13 80.4 3.9 45 3-47 50-97 (106)
98 2dgx_A KIAA0430 protein; RRM d 98.7 1.5E-08 5.2E-13 78.2 5.2 40 8-47 52-91 (96)
99 1x5o_A RNA binding motif, sing 98.7 1.3E-08 4.4E-13 80.6 4.7 45 2-46 60-112 (114)
100 3ucg_A Polyadenylate-binding p 98.7 1.3E-08 4.3E-13 76.7 4.4 43 3-46 43-85 (89)
101 3v4m_A Splicing factor U2AF 65 98.7 1.8E-08 6.2E-13 80.1 5.4 42 5-46 56-97 (105)
102 3ex7_B RNA-binding protein 8A; 98.7 1.4E-08 4.7E-13 81.8 4.7 46 3-48 59-104 (126)
103 2cq3_A RNA-binding protein 9; 98.7 2.5E-08 8.6E-13 77.5 5.8 43 5-47 52-94 (103)
104 2dha_A FLJ20171 protein; RRM d 98.7 1.1E-08 3.7E-13 83.9 3.8 47 2-49 62-108 (123)
105 1x4a_A Splicing factor, argini 98.7 1.9E-08 6.6E-13 79.0 5.1 45 3-47 56-100 (109)
106 2la4_A Nuclear and cytoplasmic 98.7 1.6E-08 5.3E-13 78.4 4.5 41 6-46 61-101 (101)
107 3lqv_A PRE-mRNA branch site pr 98.7 4.5E-08 1.5E-12 77.5 7.0 45 4-48 43-87 (115)
108 2err_A Ataxin-2-binding protei 98.7 1.7E-08 5.9E-13 79.9 4.5 43 4-46 65-107 (109)
109 2cqi_A Nucleolysin TIAR; RNA r 98.6 2.8E-08 9.6E-13 77.2 5.5 45 4-48 51-95 (103)
110 3q2s_C Cleavage and polyadenyl 98.6 1.5E-08 5E-13 91.1 4.4 46 3-48 107-152 (229)
111 1h2v_Z 20 kDa nuclear CAP bind 98.6 1.9E-08 6.5E-13 84.1 4.5 45 3-47 76-120 (156)
112 1rk8_A CG8781-PA, CG8781-PA pr 98.6 2.2E-08 7.7E-13 84.8 4.9 48 3-50 109-156 (165)
113 1x5p_A Negative elongation fac 98.6 2.9E-08 9.9E-13 76.5 5.0 43 5-47 46-88 (97)
114 2hgm_A HNRPF protein, heteroge 98.6 1.2E-08 4.1E-13 84.1 3.0 46 1-47 77-122 (126)
115 1wg1_A KIAA1579 protein, homol 98.6 2.4E-08 8.2E-13 75.8 4.1 41 6-46 38-78 (88)
116 1x4e_A RNA binding motif, sing 98.6 1.2E-08 4.1E-13 76.5 2.3 42 3-44 42-83 (85)
117 2jwn_A Embryonic polyadenylate 98.6 3.4E-08 1.2E-12 79.2 5.0 43 3-46 73-115 (124)
118 2cqh_A IGF-II mRNA-binding pro 98.6 1.7E-08 5.9E-13 77.0 3.0 43 6-48 42-85 (93)
119 2dit_A HIV TAT specific factor 98.6 3E-08 1E-12 78.9 4.5 42 6-47 62-103 (112)
120 2hvz_A Splicing factor, argini 98.6 3.5E-08 1.2E-12 76.4 4.7 41 7-47 36-76 (101)
121 2dh8_A DAZ-associated protein 98.6 1.7E-08 5.9E-13 78.7 2.9 45 3-48 53-97 (105)
122 1x4b_A Heterogeneous nuclear r 98.6 2.7E-08 9.3E-13 79.0 3.6 45 3-48 64-108 (116)
123 2cqd_A RNA-binding region cont 98.6 3.9E-08 1.3E-12 78.1 4.5 43 3-46 54-96 (116)
124 1uaw_A Mouse-musashi-1; RNP-ty 98.6 2.7E-08 9.1E-13 72.9 2.9 40 3-43 37-76 (77)
125 2lea_A Serine/arginine-rich sp 98.5 2.8E-08 9.5E-13 82.0 3.1 45 3-47 84-128 (135)
126 2rs2_A Musashi-1, RNA-binding 98.5 3.1E-08 1.1E-12 78.5 3.2 45 3-48 62-106 (109)
127 2qfj_A FBP-interacting repress 98.5 8.9E-08 3E-12 82.5 6.4 73 4-91 66-138 (216)
128 3r27_A HnRNP L, heterogeneous 98.5 3.5E-08 1.2E-12 78.4 3.5 42 6-47 55-98 (100)
129 2hgn_A Heterogeneous nuclear r 98.5 1.6E-08 5.4E-13 84.7 1.4 47 1-48 79-125 (139)
130 2bz2_A Negative elongation fac 98.5 4.8E-08 1.6E-12 79.3 4.2 44 6-49 71-114 (121)
131 2cpj_A Non-POU domain-containi 98.5 5.8E-08 2E-12 75.0 4.1 41 6-46 49-89 (99)
132 2cpd_A Apobec-1 stimulating pr 98.5 8.6E-08 2.9E-12 74.0 5.0 42 6-47 49-90 (99)
133 3s7r_A Heterogeneous nuclear r 98.5 7.2E-08 2.5E-12 72.5 4.3 40 3-43 48-87 (87)
134 2xnq_A Nuclear polyadenylated 98.5 1E-07 3.5E-12 74.0 5.1 40 7-46 56-95 (97)
135 1whx_A Hypothetical protein ri 98.5 8.4E-08 2.9E-12 76.3 4.5 41 6-46 44-84 (111)
136 2jvo_A Nucleolar protein 3; nu 98.5 9E-08 3.1E-12 75.9 4.6 42 8-49 65-106 (108)
137 1sjq_A Polypyrimidine tract-bi 98.5 8.4E-08 2.9E-12 76.8 4.4 41 7-47 51-93 (105)
138 2kvi_A Nuclear polyadenylated 98.5 6.5E-08 2.2E-12 74.5 3.6 42 7-48 44-85 (96)
139 2diu_A KIAA0430 protein; struc 98.5 6.4E-08 2.2E-12 76.5 3.5 39 9-47 47-85 (96)
140 2cqg_A TDP-43, TAR DNA-binding 98.5 9.3E-08 3.2E-12 74.2 4.4 43 3-47 52-94 (103)
141 1iqt_A AUF1, heterogeneous nuc 98.5 5.9E-08 2E-12 70.8 2.9 40 3-43 36-75 (75)
142 2dnq_A RNA-binding protein 4B; 98.5 1.2E-07 4.1E-12 71.9 4.8 40 8-47 42-81 (90)
143 1x4f_A Matrin 3; structural ge 98.5 5.5E-08 1.9E-12 78.7 2.7 42 6-47 60-103 (112)
144 2ytc_A PRE-mRNA-splicing facto 98.5 1.3E-07 4.3E-12 70.7 4.5 38 7-44 47-85 (85)
145 2cq2_A Hypothetical protein LO 98.5 1.2E-07 4.2E-12 77.0 4.5 40 7-46 62-106 (114)
146 1x4g_A Nucleolysin TIAR; struc 98.4 1.8E-07 6E-12 73.6 5.0 40 8-47 61-100 (109)
147 3s6e_A RNA-binding protein 39; 98.4 1.5E-07 5E-12 76.2 4.5 39 7-45 54-92 (114)
148 1x4d_A Matrin 3; structural ge 98.4 8.6E-08 3E-12 76.1 3.0 41 6-46 50-92 (102)
149 2xs2_A Deleted in azoospermia- 98.4 4.1E-08 1.4E-12 76.1 1.1 45 2-48 44-88 (102)
150 1why_A Hypothetical protein ri 98.4 1.6E-07 5.5E-12 72.2 4.4 40 8-47 53-94 (97)
151 3md3_A Nuclear and cytoplasmic 98.4 2.6E-07 8.9E-12 75.8 5.8 46 1-46 34-79 (166)
152 2cq1_A PTB-like protein L; RRM 98.4 2.2E-07 7.6E-12 73.4 5.0 41 7-47 50-92 (101)
153 2dgt_A RNA-binding protein 30; 98.4 2.5E-07 8.5E-12 70.4 4.9 40 8-47 44-83 (92)
154 2dgu_A Heterogeneous nuclear r 98.4 1.6E-07 5.5E-12 73.1 3.9 42 7-48 44-85 (103)
155 1wf1_A RNA-binding protein RAL 98.4 1.4E-07 4.6E-12 74.4 3.5 40 7-46 61-100 (110)
156 3pgw_A U1-A; protein-RNA compl 98.4 1.4E-07 4.8E-12 85.3 4.0 46 3-48 47-92 (282)
157 1fxl_A Paraneoplastic encephal 98.4 2.5E-07 8.6E-12 76.0 5.1 43 4-46 40-82 (167)
158 1wex_A Hypothetical protein (r 98.4 1.5E-07 5E-12 74.7 3.3 41 7-47 50-92 (104)
159 2dnp_A RNA-binding protein 14; 98.4 3E-07 1E-11 69.7 4.7 40 8-47 43-82 (90)
160 1b7f_A Protein (SXL-lethal pro 98.4 3.3E-07 1.1E-11 75.7 4.9 44 3-46 40-83 (168)
161 1sjr_A Polypyrimidine tract-bi 98.3 2.7E-07 9.1E-12 79.6 4.1 41 6-46 82-124 (164)
162 2hzc_A Splicing factor U2AF 65 98.3 3.8E-07 1.3E-11 68.2 4.4 36 6-42 51-86 (87)
163 1x4c_A Splicing factor, argini 98.3 3.7E-07 1.3E-11 71.8 4.3 39 9-47 51-94 (108)
164 1fje_B Nucleolin RBD12, protei 98.3 2.9E-07 1E-11 77.0 3.7 44 3-47 49-92 (175)
165 2ad9_A Polypyrimidine tract-bi 98.3 3.3E-07 1.1E-11 74.8 3.9 41 7-47 66-108 (119)
166 3pgw_S U1-70K; protein-RNA com 98.3 5.2E-07 1.8E-11 88.5 5.1 45 3-47 139-183 (437)
167 3zzy_A Polypyrimidine tract-bi 98.3 6.2E-07 2.1E-11 74.5 4.6 41 6-46 63-106 (130)
168 2d9o_A DNAJ (HSP40) homolog, s 98.2 8.8E-07 3E-11 70.0 4.7 41 5-47 51-91 (100)
169 2j8a_A Histone-lysine N-methyl 98.2 1.2E-06 4.1E-11 73.1 5.3 46 3-48 43-98 (136)
170 3tyt_A Heterogeneous nuclear r 98.2 1.1E-06 3.7E-11 77.4 4.8 40 7-46 41-80 (205)
171 4f02_A Polyadenylate-binding p 98.2 1.9E-06 6.5E-11 75.3 6.2 65 3-91 52-116 (213)
172 2e44_A Insulin-like growth fac 98.2 1.6E-06 5.4E-11 66.2 4.9 41 7-47 53-93 (96)
173 3smz_A Protein raver-1, ribonu 98.1 2.1E-06 7.1E-11 77.6 5.6 44 3-46 132-175 (284)
174 2ghp_A U4/U6 snRNA-associated 98.1 1.6E-06 5.6E-11 78.6 4.8 71 2-91 153-224 (292)
175 1l3k_A Heterogeneous nuclear r 98.1 2.1E-06 7.1E-11 72.7 5.1 68 3-91 50-117 (196)
176 2yh0_A Splicing factor U2AF 65 98.1 1.2E-06 4E-11 74.4 3.4 42 4-46 47-88 (198)
177 2e5g_A U6 snRNA-specific termi 98.1 1.6E-06 5.3E-11 66.3 3.7 37 10-47 47-83 (94)
178 2e5i_A Heterogeneous nuclear r 98.1 2E-06 6.9E-11 70.6 4.4 38 9-46 62-102 (124)
179 2g4b_A Splicing factor U2AF 65 98.1 2.3E-06 7.8E-11 70.9 4.2 42 4-46 47-88 (172)
180 3beg_B Splicing factor, argini 98.1 3.2E-06 1.1E-10 67.4 4.6 35 9-43 52-86 (115)
181 2dnl_A Cytoplasmic polyadenyla 98.0 3E-06 1E-10 67.3 3.9 39 5-45 49-87 (114)
182 3sde_A Paraspeckle component 1 98.0 2.4E-06 8.1E-11 77.1 3.4 46 2-47 131-180 (261)
183 2cjk_A Nuclear polyadenylated 98.0 4.9E-06 1.7E-10 68.6 5.1 43 3-47 40-82 (167)
184 3d2w_A TAR DNA-binding protein 98.0 6E-06 2.1E-10 63.0 4.5 40 6-49 46-87 (89)
185 3sde_A Paraspeckle component 1 97.8 1.1E-05 3.8E-10 72.7 4.7 40 5-44 55-94 (261)
186 2adc_A Polypyrimidine tract-bi 97.8 1.2E-05 4.1E-10 70.9 4.5 39 8-46 72-110 (229)
187 3nmr_A Cugbp ELAV-like family 97.8 1.4E-05 4.6E-10 66.1 4.5 41 6-46 45-88 (175)
188 1qm9_A Polypyrimidine tract-bi 97.8 1E-05 3.5E-10 69.0 3.0 39 8-46 41-79 (198)
189 2dnr_A Synaptojanin-1; RRM dom 97.7 1.6E-05 5.5E-10 62.1 3.3 37 9-46 50-86 (91)
190 3tht_A Alkylated DNA repair pr 97.7 3.1E-05 1.1E-09 73.9 4.9 39 7-45 55-98 (345)
191 1wf0_A TDP-43, TAR DNA-binding 97.6 1.3E-05 4.6E-10 60.1 1.0 40 6-47 40-79 (88)
192 2ghp_A U4/U6 snRNA-associated 97.4 0.0001 3.5E-09 66.6 5.0 36 7-43 80-115 (292)
193 1ufw_A Synaptojanin 2; RNP dom 97.2 0.00023 7.9E-09 55.9 3.3 33 11-44 61-93 (95)
194 3u1l_A PRE-mRNA-splicing facto 96.4 0.0018 6.3E-08 58.7 3.7 28 6-33 177-204 (240)
195 2i2y_A Fusion protein consists 96.2 0.0014 4.9E-08 53.8 1.5 41 5-46 10-51 (150)
196 2kn4_A Immunoglobulin G-bindin 96.0 0.0028 9.7E-08 52.1 2.6 28 5-32 10-37 (158)
197 1owx_A Lupus LA protein, SS-B, 93.0 0.11 3.8E-06 42.2 4.7 40 10-49 57-99 (121)
198 2l9w_A U4/U6 snRNA-associated- 92.8 0.13 4.6E-06 41.4 4.9 35 9-43 63-97 (117)
199 1wey_A Calcipressin 1; structu 90.0 0.24 8.1E-06 39.3 3.6 37 9-45 47-83 (104)
200 3p3d_A Nucleoporin 53; structu 70.1 4 0.00014 33.6 3.9 36 8-44 62-97 (132)
201 1wwh_A Nucleoporin 35, nucleop 46.9 21 0.00073 28.6 4.3 37 9-46 60-97 (119)
202 2g0c_A ATP-dependent RNA helic 46.1 9.2 0.00031 27.3 1.8 35 9-44 41-75 (76)
203 2gle_A Neurabin-1; SAM domain, 36.7 37 0.0013 24.0 3.9 42 254-295 30-72 (74)
204 2dhx_A Poly (ADP-ribose) polym 35.2 31 0.0011 27.1 3.4 35 9-44 48-82 (104)
205 2wx3_A MRNA-decapping enzyme 1 32.9 20 0.00068 24.6 1.7 21 267-287 18-38 (51)
206 3lcn_C MRNA transport factor G 32.2 47 0.0016 19.9 3.0 19 277-295 9-27 (29)
207 3bs7_A Protein aveugle; sterIl 30.7 83 0.0028 22.3 5.0 41 254-294 31-72 (78)
208 3bs5_B Connector enhancer of k 29.5 70 0.0024 22.8 4.4 40 255-294 33-73 (80)
209 2ean_A Connector enhancer of k 28.6 76 0.0026 22.9 4.5 40 255-294 37-77 (83)
210 1uw4_A UPF3X; nonsense mediate 27.6 49 0.0017 25.1 3.3 28 9-36 46-73 (91)
211 1uqv_A STE50 protein; SAM, ste 26.8 45 0.0015 25.2 2.9 37 255-291 40-77 (85)
212 2wx4_A DCP1, decapping protein 26.6 20 0.00069 24.1 0.8 21 267-287 16-36 (46)
213 3bs5_A Protein aveugle; sterIl 26.0 1.3E+02 0.0046 23.0 5.7 42 254-295 51-93 (106)
214 2e8o_A SAM domain and HD domai 22.6 1E+02 0.0035 23.3 4.4 39 254-292 55-94 (103)
215 1wwv_A Connector enhancer of k 21.8 53 0.0018 24.7 2.5 41 254-294 37-78 (91)
No 1
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=99.98 E-value=4.9e-33 Score=234.58 Aligned_cols=87 Identities=84% Similarity=1.114 Sum_probs=81.9
Q ss_pred ccccCCCCccchhHhhhcChHHHHHhhhccchhhhhhhCCCCCCCchhhcccCChHHHHHhhCChHHHHHHHHHHHHHHH
Q psy14476 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 291 (303)
Q Consensus 212 ~~~~~~~~~ltas~l~~~~~~~qk~~lGe~ly~~v~~~~p~~A~KITGMlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~ 291 (303)
+.++.+++++|+++|+++++++||++|||+|||+|+.++|++|+||||||||||++|||+||+|+|+|++||+||++||+
T Consensus 44 ~~~~~~~~pl~as~La~a~p~eQkq~LGE~LyplV~~~~p~~A~KITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~ 123 (144)
T 1g9l_A 44 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQ 123 (144)
T ss_dssp SCCCCSCCCCSHHHHTTCTTTTTTTTTTSSSHHHHHHHTTSCCSSHHHHTTTSSSHHHHHHHHCTTHHHHHHHHHHHHHH
T ss_pred CCCCCCcchhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHH
Confidence 34556788999999999999999999999999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHHH
Q psy14476 292 AHQAKQA 298 (303)
Q Consensus 292 ~~~~~~~ 298 (303)
+|++++.
T Consensus 124 ~~~~~~~ 130 (144)
T 1g9l_A 124 AHQAKEA 130 (144)
T ss_dssp TTSSSTT
T ss_pred HHHhccc
Confidence 9986554
No 2
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=99.97 E-value=3.8e-33 Score=217.63 Aligned_cols=84 Identities=80% Similarity=1.048 Sum_probs=76.1
Q ss_pred CccchhHhhhcChHHHHHhhhccchhhhhhhCCCCCCCchhhcccCChHHHHHhhCChHHHHHHHHHHHHHHHHHHHHHH
Q psy14476 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQA 298 (303)
Q Consensus 219 ~~ltas~l~~~~~~~qk~~lGe~ly~~v~~~~p~~A~KITGMlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~~~~~~ 298 (303)
+++|+++|+++++++||++|||+|||+|++++|++|+||||||||||++|||+||+|+++|++||+||++||++|+.++.
T Consensus 5 ~~l~~s~la~a~p~~Qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~Ell~lle~~e~L~~kV~EA~~vL~~~~~~~~ 84 (88)
T 3kuj_A 5 SPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 84 (88)
T ss_dssp -CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccchHHHHHcCCHHHHHHHHHHHhHHHHHhhCCCccchhhhHhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred hhhc
Q psy14476 299 AVKK 302 (303)
Q Consensus 299 ~~~~ 302 (303)
.+++
T Consensus 85 ~~~~ 88 (88)
T 3kuj_A 85 AQKA 88 (88)
T ss_dssp ----
T ss_pred cCCC
Confidence 6653
No 3
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=99.97 E-value=1e-33 Score=219.16 Aligned_cols=80 Identities=45% Similarity=0.662 Sum_probs=76.8
Q ss_pred cCCCCccchhHhhhcChHHHHHhhhccchhhhhhhCCCCCCCchhhcccCChHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q psy14476 215 VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294 (303)
Q Consensus 215 ~~~~~~ltas~l~~~~~~~qk~~lGe~ly~~v~~~~p~~A~KITGMlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~~ 294 (303)
+++++|+|+++|+++++++||++|||+|||+|+.++|++||||||||||||++|||+||+|+|+|++||+||++||++|+
T Consensus 4 ~~~~~~l~~s~La~a~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~ElL~Lle~~e~L~~kV~EA~~vL~~~~ 83 (85)
T 1nmr_A 4 LASQGQNLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRHM 83 (85)
T ss_dssp CCCCCCTTHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTHHHHHHTTCCTHHHHHHHHHHHHHHTTCCC
T ss_pred ccCCCccCHHHHHcCChHHHHHHHHHHHHHHHHHhCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHhh
Confidence 35678999999999999999999999999999999999999999999999999999999999999999999999998764
No 4
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=99.97 E-value=4.3e-33 Score=218.62 Aligned_cols=81 Identities=31% Similarity=0.452 Sum_probs=76.8
Q ss_pred CccchhHhhhcChHHHHHhhhccchhhhhh--hCCCCCCCchhhcccCChHHHHHhhCChHHHHHHHHHHHHHHHHHHHH
Q psy14476 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQR--MYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAK 296 (303)
Q Consensus 219 ~~ltas~l~~~~~~~qk~~lGe~ly~~v~~--~~p~~A~KITGMlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~~~~ 296 (303)
.|+++++|+++++++||++|||+|||+|.. ++|++||||||||||||++|||+||+|+|+|++||+||++||++|++.
T Consensus 5 ~p~~a~~la~~~p~~Qkq~LGE~LyplV~~~~~~pelAgKITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~ 84 (92)
T 1ifw_A 5 SPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKE 84 (92)
T ss_dssp CSSCCSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccchHHHhcCChHHHHHHHHHHHHHHHHHhhcCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 467899999999999999999999999999 999999999999999999999999999999999999999999999975
Q ss_pred HHh
Q psy14476 297 QAA 299 (303)
Q Consensus 297 ~~~ 299 (303)
+..
T Consensus 85 ~~~ 87 (92)
T 1ifw_A 85 QEQ 87 (92)
T ss_dssp CTT
T ss_pred hhh
Confidence 443
No 5
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=99.97 E-value=1.3e-32 Score=213.02 Aligned_cols=75 Identities=44% Similarity=0.721 Sum_probs=72.6
Q ss_pred cchhHhhhcChHHHHHhhhccchhhhhhhCCCCCCCchhhcccCChHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q psy14476 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295 (303)
Q Consensus 221 ltas~l~~~~~~~qk~~lGe~ly~~v~~~~p~~A~KITGMlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~~~ 295 (303)
+++++|+++++++||++|||+|||+|++++|++||||||||||||++|||+||+|+|+|++||+||++||++|++
T Consensus 9 ~~as~La~~~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~Ell~Lles~e~L~~kv~EA~~vL~~~~~ 83 (85)
T 2dyd_A 9 ALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQ 83 (85)
T ss_dssp TSCHHHHCCCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHCHHHHHHHTTCSHHHHHHHHHHHHHHTSCSS
T ss_pred hhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhh
Confidence 488999999999999999999999999999999999999999999999999999999999999999999998764
No 6
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=99.95 E-value=6.1e-29 Score=181.56 Aligned_cols=60 Identities=50% Similarity=0.855 Sum_probs=59.0
Q ss_pred HHHhhhccchhhhhhhCCCCCCCchhhcccCChHHHHHhhCChHHHHHHHHHHHHHHHHH
Q psy14476 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293 (303)
Q Consensus 234 qk~~lGe~ly~~v~~~~p~~A~KITGMlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~ 293 (303)
||++|||+|||+|++++|++|+||||||||||++|||+||+|+|+|++||+||++||++|
T Consensus 1 qkq~LGe~Lyp~V~~~~p~~A~KITGMLLE~d~~ell~ll~~~e~L~~kv~EA~~vl~~~ 60 (61)
T 1i2t_A 1 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 60 (61)
T ss_dssp CHHHHHHHHHHHHHHHCGGGHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHH
T ss_pred CHHHHHHHHHHHHHHhCcccccchhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHc
Confidence 699999999999999999999999999999999999999999999999999999999987
No 7
>3s8s_A Histone-lysine N-methyltransferase SETD1A; chromatin modification, transcription regulation, structural genomics, structural genomics consortium; 1.30A {Homo sapiens}
Probab=99.07 E-value=1.8e-10 Score=92.23 Aligned_cols=49 Identities=16% Similarity=0.219 Sum_probs=44.9
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~ 51 (303)
.||+|||||||+|++.++|++||+.|||..|+||.|+|.++..++.++.
T Consensus 43 ~tg~~rG~aFV~f~~~~~A~~Ai~~lng~~~~gr~i~V~~a~~~~~~~~ 91 (110)
T 3s8s_A 43 RTRKHLGLARVLFTSTRGAKETVKNLHLTSVMGNIIHAQLDIKGQQRMK 91 (110)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSTTHHHHH
T ss_pred CCCceeeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCcHHHH
Confidence 3699999999999999999999999999999999999999987766544
No 8
>4f25_A Polyadenylate-binding protein 1; RRM fold, translation initiation, RNA-binding, EIF4G-binding translation; 1.90A {Homo sapiens} PDB: 4f26_A 2k8g_A
Probab=99.04 E-value=9.8e-11 Score=93.89 Aligned_cols=48 Identities=33% Similarity=0.713 Sum_probs=42.1
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~ 51 (303)
.++|||||||+|.+.++|++||+.|||..|+||.|+|.++.++.++..
T Consensus 41 ~~~~kg~afV~f~~~~~A~~Ai~~l~~~~~~g~~i~V~~a~~~~~~~~ 88 (115)
T 4f25_A 41 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREA 88 (115)
T ss_dssp TTEEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEESSCCCC---
T ss_pred CCCCCceEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCcccccc
Confidence 356899999999999999999999999999999999999998776544
No 9
>4fxv_A ELAV-like protein 1; RNA recognition motif, putative RNA-binding domain, transcri structural genomics, joint center for structural genomics; 1.90A {Homo sapiens}
Probab=99.00 E-value=3.1e-10 Score=89.04 Aligned_cols=43 Identities=33% Similarity=0.596 Sum_probs=41.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
.+|++||||||+|.+.++|++||+.|||..|+||+|+|+||++
T Consensus 56 ~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~AkP 98 (99)
T 4fxv_A 56 VAGHSLGYGFVNYVTAKDAERAINTLNGLRLQSKTIKVSYARP 98 (99)
T ss_dssp SSCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCB
T ss_pred CCCcccccEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEeeC
Confidence 4799999999999999999999999999999999999999975
No 10
>3ns6_A Eukaryotic translation initiation factor 3 subuni; 1.25A {Saccharomyces cerevisiae} PDB: 3ns5_A
Probab=98.93 E-value=6.9e-10 Score=86.75 Aligned_cols=46 Identities=26% Similarity=0.447 Sum_probs=42.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecc-cceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~G-R~L~V~~A~~k~~ 48 (303)
.||+|||||||+|.+.++|++||+.|||..|+| |.|+|.+|.+++.
T Consensus 49 ~tg~~kG~afV~f~~~~~A~~Ai~~lng~~~~g~r~l~V~~a~~~~~ 95 (100)
T 3ns6_A 49 ATGKTKGFLFVECGSMNDAKKIIKSFHGKRLDLKHRLFLYTMKDVER 95 (100)
T ss_dssp TTTEECSEEEEEESSHHHHHHHHHHHTTCBSSSSCBCEEEESHHHHH
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCcccCCCeEEEEEECchhhh
Confidence 369999999999999999999999999999999 9999999987643
No 11
>3p5t_L Cleavage and polyadenylation specificity factor S; RRM domain, poly(A) site recognition, RNA, nuclear, RNA BIND protein; 2.70A {Homo sapiens} PDB: 3p6y_C
Probab=98.93 E-value=4.1e-10 Score=86.03 Aligned_cols=46 Identities=24% Similarity=0.346 Sum_probs=38.9
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|+|||||||+|.+.++|++||+.|||..|+||.|+|.++.++..
T Consensus 40 ~~g~~kG~afV~f~~~~~a~~Ai~~l~g~~~~gr~i~V~~~~~~~~ 85 (90)
T 3p5t_L 40 ANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPSNKLEH 85 (90)
T ss_dssp TTCCEEEEEEECC-CHHHHHHHHHHGGGSCSSSCCCEECCC-----
T ss_pred CCCccCcEEEEEECCHHHHHHHHHHcCCCeeCCEEEEEEECCCCcc
Confidence 4899999999999999999999999999999999999999987643
No 12
>3md1_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RBD, RNP, poly(U) binding, nucleus, RNA-binding, binding protein; 1.60A {Saccharomyces cerevisiae} SCOP: d.58.7.0
Probab=98.91 E-value=1.2e-09 Score=81.46 Aligned_cols=45 Identities=36% Similarity=0.733 Sum_probs=42.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|+++|||||+|.+.++|++|++.|||..|+|++|+|.++.+++
T Consensus 38 ~~~~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 82 (83)
T 3md1_A 38 QTGSSRGYGFVSFTSQDDAQNAMDSMQGQDLNGRPLRINWAAKLE 82 (83)
T ss_dssp TTCCEEEEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCCCC
T ss_pred CCCCccceEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEecCcCC
Confidence 579999999999999999999999999999999999999998764
No 13
>2a3j_A U1 small nuclear ribonucleoprotein A; computationally designed protein, RRM, U1A, RNA binding protein; NMR {Homo sapiens}
Probab=98.91 E-value=8.6e-10 Score=90.93 Aligned_cols=49 Identities=18% Similarity=0.375 Sum_probs=45.2
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~ 51 (303)
.+|++||||||+|.+.++|++||+.|||..|.||+|+|+||..+.++..
T Consensus 67 ~~~~~rG~aFV~F~~~~~A~~Ai~~lng~~l~gr~l~V~~a~~~~~~~~ 115 (127)
T 2a3j_A 67 LSDDNSGKAYIVFATQESAQAFVEAFQGYPFQGNPLVITFSETPQSQVA 115 (127)
T ss_dssp CCCSSCCCEEEEESSHHHHHHHHHHSTTCCCTTSCCEEEECCCCCHHHH
T ss_pred cCCCcCCEEEEEECCHHHHHHHHHHHCCCEeCCCEEEEEEccCcchhcc
Confidence 4789999999999999999999999999999999999999998876543
No 14
>2lkz_A RNA-binding protein 5; RRM; NMR {Homo sapiens}
Probab=98.90 E-value=7.7e-10 Score=86.65 Aligned_cols=43 Identities=26% Similarity=0.417 Sum_probs=40.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCc----eecccceeeecccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGR----IIGSKPLYVALAQR 45 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~----~l~GR~L~V~~A~~ 45 (303)
.||+|||||||+|.+.++|++||+.|||. .|+||+|+|+||+.
T Consensus 48 ~tg~srG~aFV~f~~~~~A~~Ai~~lng~~~~~~i~Gr~i~V~~Aks 94 (95)
T 2lkz_A 48 QTQQNRGFAFVQLSSAMDASQLLQILQSLHPPLKIDGKTIGVDFAKS 94 (95)
T ss_dssp SSSSCSSEEEEECSSSHHHHHHHHHHHSSSSCEEETTEEEEEEECCC
T ss_pred CCCCCceEeEEEECCHHHHHHHHHHhcCCCCCceECCEEEEEEEccC
Confidence 47999999999999999999999999997 59999999999974
No 15
>1jmt_A Splicing factor U2AF 35 kDa subunit; RRM, RNA splicing, proline, PPII helix, peptide recognition, RNA binding protein; 2.20A {Homo sapiens} SCOP: d.58.7.3
Probab=98.89 E-value=1.3e-09 Score=86.48 Aligned_cols=42 Identities=29% Similarity=0.425 Sum_probs=39.8
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecc
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A 43 (303)
|.+|+|||||||+|.+.++|.+|++.|||+.++||+|+|.|+
T Consensus 62 ~~~~~~~G~~fV~f~~~~~A~~A~~~lng~~~~Gr~i~v~~s 103 (104)
T 1jmt_A 62 NLGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAELS 103 (104)
T ss_dssp SSSSSSEEEEEEEESCHHHHHHHHHHHTTCEETTEECCEEEC
T ss_pred CCCCCccEEEEEEECCHHHHHHHHHHHCCCEECCEEEEEEEc
Confidence 556899999999999999999999999999999999999986
No 16
>3bs9_A Nucleolysin TIA-1 isoform P40; RNA recognition motif, RRM, RNA binding domain, RBD, RNA splicing, apoptosis, phosphoprotein, RNA-binding; 1.95A {Homo sapiens}
Probab=98.89 E-value=1.5e-09 Score=81.58 Aligned_cols=44 Identities=36% Similarity=0.684 Sum_probs=40.7
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.+|++||||||+|.+.++|++|++.|||..++|+.|+|.++.++
T Consensus 43 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~k 86 (87)
T 3bs9_A 43 ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRK 86 (87)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC--
T ss_pred CCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEecCCC
Confidence 48999999999999999999999999999999999999999875
No 17
>1x5t_A Splicing factor 3B subunit 4; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.89 E-value=9.5e-10 Score=84.31 Aligned_cols=46 Identities=33% Similarity=0.671 Sum_probs=43.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|+++|||||+|.+.++|++|++.|||..|+|++|+|.++.++..
T Consensus 43 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 88 (96)
T 1x5t_A 43 DTGNSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDS 88 (96)
T ss_dssp TTCSCCSEEEEEBSSHHHHHHHHHTTTTCEETTEECEEEESCCCCC
T ss_pred CCCCcCeEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEecccCC
Confidence 5899999999999999999999999999999999999999987643
No 18
>2lxi_A RNA-binding protein 10; NMR {Homo sapiens}
Probab=98.89 E-value=8.5e-10 Score=85.01 Aligned_cols=45 Identities=27% Similarity=0.380 Sum_probs=40.7
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhC-CceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMN-GRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~ln-G~~l~GR~L~V~~A~~k~ 47 (303)
.||++||||||+|.+.++|++|++.++ +..|+||+|+|.+|.++.
T Consensus 39 ~t~~~rg~aFV~F~~~~~A~~Ai~~~~~~~~~~gr~i~V~~a~~~~ 84 (91)
T 2lxi_A 39 SSGQSRGFAFVEFSHLQDATRWMEANQHSLNILGQKVSMHYSDPKP 84 (91)
T ss_dssp SSCCCSSEEEEECSSHHHHHHHHHTTTTEEEETTEEEEEECCCSCC
T ss_pred CCCCcCceEEEEecCHHHHHHHHHhcCCCeEECCEEEEEEEcCCCC
Confidence 479999999999999999999999874 567999999999998764
No 19
>2fc8_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.88 E-value=9.3e-10 Score=85.41 Aligned_cols=46 Identities=39% Similarity=0.555 Sum_probs=43.2
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|++||||||+|.+.++|++||+.|||..|+|+.|+|.+++++.+
T Consensus 49 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 94 (102)
T 2fc8_A 49 ETGSSKGFGFVDFNSEEDAKAAKEAMEDGEIDGNKVTLDWAKPKGE 94 (102)
T ss_dssp SSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCCCS
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCCCC
Confidence 4789999999999999999999999999999999999999987654
No 20
>2do4_A Squamous cell carcinoma antigen recognized by T- cells 3; RRM domaim, RDB, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.87 E-value=8.8e-10 Score=85.40 Aligned_cols=46 Identities=26% Similarity=0.503 Sum_probs=43.3
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
|.+|++||||||+|.+.++|++|++.|||..|+|+.|+|.++.++.
T Consensus 52 ~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 97 (100)
T 2do4_A 52 NRAGKPKGLAYVEYENESQASQAVMKMDGMTIKENIIKVAISNSGP 97 (100)
T ss_dssp CTTSCEEEEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEECCCCS
T ss_pred CCCCCEEeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCCC
Confidence 5689999999999999999999999999999999999999998764
No 21
>3n9u_C Cleavage and polyadenylation specificity factor S; protein-protein complex, coexpression, heterotetramer, mRNA maturation, mRNA cleavage; 1.92A {Homo sapiens}
Probab=98.87 E-value=2.6e-09 Score=90.69 Aligned_cols=47 Identities=23% Similarity=0.394 Sum_probs=43.8
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r 49 (303)
.+|++||||||+|.+.++|++||+.|||..|+||.|+|.+|.++...
T Consensus 94 ~tg~skGfaFV~f~~~~~A~~Ai~~lng~~~~Gr~l~V~~a~~~~~~ 140 (156)
T 3n9u_C 94 ANGQSKGYAEVVVASENSVHKLLELLPGKVLNGEKVDVRPATRQNLS 140 (156)
T ss_dssp TTCCEEEEEEEEESCHHHHHHHHHHSTTCEETTEECEEEECCHHHHH
T ss_pred CCCccceEEEEEECCHHHHHHHHHHcCCCEECCeEeEEEEcCCCcch
Confidence 48999999999999999999999999999999999999999876543
No 22
>2dgw_A Probable RNA-binding protein 19; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.87 E-value=1.3e-09 Score=82.97 Aligned_cols=45 Identities=27% Similarity=0.408 Sum_probs=42.2
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
|.+|++||||||+|.+.++|++|++ |||..|+||.|.|.++.++.
T Consensus 44 ~~~g~~~g~afV~f~~~~~a~~A~~-~~g~~~~gr~i~v~~a~~~~ 88 (91)
T 2dgw_A 44 NAHGNKTGYIFVDFSNEEEVKQALK-CNREYMGGRYIEVFREKSGP 88 (91)
T ss_dssp CTTSCEEEEEEEECSSHHHHHHHHH-SCSEEETTEEEEEEEESSCC
T ss_pred CCCCCCceEEEEEECCHHHHHHHHH-hCCceeCCcEEEEEECCcCC
Confidence 5789999999999999999999999 99999999999999998763
No 23
>2cpe_A RNA-binding protein EWS; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.87 E-value=1.3e-09 Score=86.25 Aligned_cols=46 Identities=33% Similarity=0.471 Sum_probs=43.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|++||||||+|.+.++|++||+.|||..|+|+.|+|.++.++..
T Consensus 60 ~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 105 (113)
T 2cpe_A 60 ETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPP 105 (113)
T ss_dssp TTCSBCSEEEEEBSSHHHHHHHHHHHTTCEETTEECEEECSSCCCC
T ss_pred CCCCeeeEEEEEECCHHHHHHHHHHcCCCccCCCEEEEEECCCCCC
Confidence 5799999999999999999999999999999999999999987643
No 24
>2fc9_A NCL protein; structure genomics, RRM_1 domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.86 E-value=1.9e-09 Score=83.56 Aligned_cols=46 Identities=30% Similarity=0.560 Sum_probs=43.0
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
|.+|++||||||+|.+.++|++||+.||+..|+|+.|+|.++.++.
T Consensus 47 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (101)
T 2fc9_A 47 NQNGKSKGYAFIEFASFEDAKEALNSCNKREIEGRAIRLELQGPRG 92 (101)
T ss_dssp CSSSCBCSEEEEECSSHHHHHHHHHHTSSEEETTEEEEEEECSSCC
T ss_pred CCCCCEeeEEEEEECCHHHHHHHHHHhCCCEeCCeEEEEEEcCCCC
Confidence 4689999999999999999999999999999999999999998763
No 25
>1whw_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.86 E-value=1.7e-09 Score=83.41 Aligned_cols=45 Identities=36% Similarity=0.578 Sum_probs=42.6
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
+|++||||||+|.+.++|++|++.|||..|+|++|+|.++.++..
T Consensus 46 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 90 (99)
T 1whw_A 46 TKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKE 90 (99)
T ss_dssp TCCCCSEEEEEESSHHHHHHHHHHTTTEESSSCEEEEEECCCCST
T ss_pred CCCcCeEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCcc
Confidence 899999999999999999999999999999999999999987643
No 26
>1p1t_A Cleavage stimulation factor, 64 kDa subunit; RNA recognition motif, C-terminal helix, N-terminal helix, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.84 E-value=2.7e-09 Score=82.90 Aligned_cols=49 Identities=31% Similarity=0.590 Sum_probs=45.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~ 51 (303)
.+|++||||||+|.+.++|++|++.|||..|+|+.|+|.++.++..+..
T Consensus 45 ~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~ 93 (104)
T 1p1t_A 45 ETGKPKGYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKEE 93 (104)
T ss_dssp TTTEEEEEEEEECSCHHHHHHHHHHSSSBSCSSSCBEEEETTCTTHHHH
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEeCCCccchhh
Confidence 4789999999999999999999999999999999999999998766543
No 27
>2x1f_A MRNA 3'-END-processing protein RNA15; transcription-RNA complex, mRNA processing; 1.60A {Saccharomyces cerevisiae} PDB: 2x1b_A 2x1a_A 2km8_B
Probab=98.84 E-value=2.9e-09 Score=81.94 Aligned_cols=47 Identities=32% Similarity=0.551 Sum_probs=43.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r 49 (303)
.+|++||||||+|.+.++|++|++.|||..|+|+.|+|.++.++...
T Consensus 39 ~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 85 (96)
T 2x1f_A 39 QTGRSKGYAFIEFRDLESSASAVRNLNGYQLGSRFLKCGYSSNSDIS 85 (96)
T ss_dssp TTCCBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCSSGG
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEcCCCCCC
Confidence 47899999999999999999999999999999999999999987543
No 28
>2cqp_A RNA-binding protein 12; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.84 E-value=3e-09 Score=81.92 Aligned_cols=44 Identities=39% Similarity=0.560 Sum_probs=41.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.+|++||||||+|.+.++|++||+.|||..|+||.|+|.++..+
T Consensus 52 ~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (98)
T 2cqp_A 52 EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLGSGP 95 (98)
T ss_dssp SSSCEEEEEEEEESCHHHHHHHHHHTTTCEETTEECEEEESSCS
T ss_pred CCCCeeeEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEcCCC
Confidence 57899999999999999999999999999999999999998754
No 29
>2wbr_A GW182, gawky, LD47780P; DNA-binding protein, RRM, RBD, TNRC6A, mirnas, P-bodies, argonaute, mRNA decay; NMR {Drosophila melanogaster}
Probab=98.83 E-value=2.6e-09 Score=83.47 Aligned_cols=39 Identities=18% Similarity=0.403 Sum_probs=37.5
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
.|||||||+|.+.++|++||+.||+.+|.||+|+|++|.
T Consensus 41 ~~kGfaFVey~~~~eA~~Ai~~Ln~~~l~gr~I~V~~A~ 79 (89)
T 2wbr_A 41 LNQGIALCKYTTREEANKAQMALNNCVLANTTIFAESPS 79 (89)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEECC
Confidence 489999999999999999999999999999999999994
No 30
>2cpy_A RNA-binding protein 12; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.83 E-value=2.6e-09 Score=85.29 Aligned_cols=49 Identities=16% Similarity=0.363 Sum_probs=44.3
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHH
Q psy14476 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50 (303)
Q Consensus 1 ~d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~ 50 (303)
+|.+|++||||||+|.+.++|++||+. |+..|+||.|+|.++.+++.+.
T Consensus 50 ~d~~g~~~G~afV~F~~~~~a~~Al~~-~~~~~~gr~i~v~~a~~~~~~~ 98 (114)
T 2cpy_A 50 VDNNGQGLGQALVQFKNEDDARKSERL-HRKKLNGREAFVHVVTLEDMRE 98 (114)
T ss_dssp CCTTSSCSSCEEEECSSHHHHHHHGGG-CSEEETTEEEEEEEECHHHHHH
T ss_pred ECCCCCcceEEEEEECCHHHHHHHHHh-CCCccCCeEEEEEECCHHHHHH
Confidence 467899999999999999999999987 9999999999999998776543
No 31
>1oo0_B CG8781-PA, drosophila Y14; RNA recognition motif, splicing, protein complex, EXON junct complex, signaling protein; 1.85A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 2hyi_B* 2j0s_D* 2xb2_D*
Probab=98.83 E-value=1.9e-09 Score=84.95 Aligned_cols=46 Identities=26% Similarity=0.343 Sum_probs=43.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|++||||||+|.+.++|++||+.|||..|+|+.|+|.++.++..
T Consensus 63 ~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~ 108 (110)
T 1oo0_B 63 RTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGP 108 (110)
T ss_dssp TTSSBCSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEESSC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEcccCCC
Confidence 4799999999999999999999999999999999999999987654
No 32
>2cpi_A CCR4-NOT transcription complex subunit 4; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.83 E-value=3.2e-09 Score=84.32 Aligned_cols=44 Identities=18% Similarity=0.323 Sum_probs=40.6
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
++++||||||+|.+.++|++||+.|||..|+||+|+|.+|.++.
T Consensus 59 ~~~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~V~~a~~k~ 102 (111)
T 2cpi_A 59 SQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKASLGTTKY 102 (111)
T ss_dssp SSCCCEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEESCCCCS
T ss_pred cCCCCeEEEEEECcHHHHHHHHHHhCCCEECCEEEEEEeccccc
Confidence 34677999999999999999999999999999999999998763
No 33
>2dnn_A RNA-binding protein 12; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.83 E-value=4.1e-09 Score=84.56 Aligned_cols=45 Identities=27% Similarity=0.395 Sum_probs=41.3
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 1 ~d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
+|.+|++||||||+|.+.++|++|| .+|+..|+||.|.|..+..+
T Consensus 49 ~d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~a~~~ 93 (109)
T 2dnn_A 49 KDHVGRNNGNGLVKFLSPQDTFEAL-KRNRMLMIQRYVEVSPATER 93 (109)
T ss_dssp CCTTCCCCSEEEEECSSHHHHHHHH-HTTTEEETTEEEEEEECCHH
T ss_pred ECCCCCCCeEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCcc
Confidence 4677999999999999999999999 68999999999999988754
No 34
>2dhg_A TRNA selenocysteine associated protein (SECP43); RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=1.3e-09 Score=84.92 Aligned_cols=46 Identities=41% Similarity=0.718 Sum_probs=43.1
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCce-ecccceeeecccchH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRI-IGSKPLYVALAQRKE 47 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~-l~GR~L~V~~A~~k~ 47 (303)
|.+|++||||||+|.+.++|++||+.|||.. |+|++|+|.++.++.
T Consensus 45 ~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~g~~l~v~~a~~~~ 91 (104)
T 2dhg_A 45 DQTGVSKGYGFVKFTDELEQKRALTECQGAVGLGSKPVRLSVAIPKA 91 (104)
T ss_dssp CTTCCEEEEEEEEESCHHHHHHHHHHTTTCCSSSSSCCCCCBCCCCC
T ss_pred CCCCCccceEEEEECCHHHHHHHHHHccCCcccCCEeEEEEEccCCC
Confidence 5689999999999999999999999999999 999999999998764
No 35
>2d9p_A Polyadenylate-binding protein 3; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.82 E-value=1.6e-09 Score=84.32 Aligned_cols=45 Identities=89% Similarity=1.370 Sum_probs=42.6
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
+|+++|||||+|.+.++|++||+.|||..|+|+.|+|.++.++.+
T Consensus 51 ~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2d9p_A 51 GGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEE 95 (103)
T ss_dssp SSSEEEEEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEECSSCCC
T ss_pred CCCcCEEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeccccc
Confidence 789999999999999999999999999999999999999987654
No 36
>2fy1_A RNA-binding motif protein, Y chromosome, family 1 member A1; RNA binding protein, structure, protein-RNA complex, RNA stem-loop, structural protein/RNA complex; NMR {Homo sapiens}
Probab=98.82 E-value=3.1e-09 Score=85.34 Aligned_cols=45 Identities=31% Similarity=0.660 Sum_probs=42.6
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
|.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|.++.++
T Consensus 42 ~~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 86 (116)
T 2fy1_A 42 DRTSKSRGFAFITFENPADAKNAAKDMNGKSLHGKAIKVEQAKKP 86 (116)
T ss_dssp STTTTCCCEEEEECSSHHHHHHHHHHCSSCBCSSSBCEEEECCCS
T ss_pred CCCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEECCCC
Confidence 568999999999999999999999999999999999999999865
No 37
>2dnz_A Probable RNA-binding protein 23; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.82 E-value=3.4e-09 Score=81.01 Aligned_cols=45 Identities=36% Similarity=0.692 Sum_probs=42.3
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++|++.|||..|+|++|+|.++.++.
T Consensus 42 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 86 (95)
T 2dnz_A 42 DTGRSKGYGFITFSDSECARRALEQLNGFELAGRPMRVGHVTERL 86 (95)
T ss_dssp SSCCCCSEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEEESSCCC
T ss_pred CCCceeeEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccccc
Confidence 369999999999999999999999999999999999999998764
No 38
>2dnh_A Bruno-like 5, RNA binding protein; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dnk_A 2dno_A
Probab=98.82 E-value=1.7e-09 Score=84.36 Aligned_cols=48 Identities=35% Similarity=0.499 Sum_probs=43.9
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecc---cceeeecccchHHH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGS---KPLYVALAQRKEDR 49 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~G---R~L~V~~A~~k~~r 49 (303)
|.+|++||||||+|.+.++|++||+.|||..|.| ++|+|.+|..+.++
T Consensus 50 ~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~gg~~~~l~V~~a~~~~~~ 100 (105)
T 2dnh_A 50 GPDGSSKGCAFVKFSSHTEAQAAIHALHGSQTMPGASSSLVVKFADTDKES 100 (105)
T ss_dssp CSSSCEEEEEEEEESSHHHHHHHHHHHSSCCCCTTCSSCCEEEESCSSCCC
T ss_pred CCCCCcCcEEEEEeCCHHHHHHHHHHHcCCccCCCCCccEEEEECccCccc
Confidence 5689999999999999999999999999999998 99999999876543
No 39
>2la6_A RNA-binding protein FUS; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, RNA recognition; NMR {Homo sapiens}
Probab=98.81 E-value=3.2e-09 Score=82.14 Aligned_cols=42 Identities=31% Similarity=0.535 Sum_probs=40.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
++|++||||||+|.+.++|++|++.|||..|+|+.|+|.+|+
T Consensus 58 ~~g~~~G~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~A~ 99 (99)
T 2la6_A 58 ETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFAT 99 (99)
T ss_dssp TTCSEEEEEEEEBSSHHHHHHHHHHHTTCBSSSSBCEEEECC
T ss_pred CCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEecC
Confidence 579999999999999999999999999999999999999874
No 40
>2j76_E EIF-4B, EIF4B, eukaryotic translation initiation factor 4B; protein biosynthesis, RNA recognition motif, RNA binding domain, RRM, RBD, RNP; NMR {Homo sapiens}
Probab=98.81 E-value=2.1e-09 Score=83.68 Aligned_cols=44 Identities=25% Similarity=0.504 Sum_probs=41.4
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++|| .|||..|+|+.|+|.++.++.
T Consensus 56 ~~g~~~g~afV~f~~~~~a~~Ai-~l~g~~~~g~~l~V~~a~~~~ 99 (100)
T 2j76_E 56 NPERLKGFGYAEFEDLDSLLSAL-SLNEESLGNRRIRVDVADQAQ 99 (100)
T ss_dssp TTCCCCSCEEEEECCHHHHHHHH-HTTTCCBTTBCCCCEECCCSC
T ss_pred cCCccCeEEEEEECCHHHHHHHH-hcCCCEECCeEEEEEeccCCC
Confidence 48999999999999999999999 899999999999999998764
No 41
>2cqb_A Peptidyl-prolyl CIS-trans isomerase E; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.81 E-value=3.3e-09 Score=82.29 Aligned_cols=45 Identities=31% Similarity=0.486 Sum_probs=42.3
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++||+.|||..|+|+.|+|.++.++.
T Consensus 49 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 93 (102)
T 2cqb_A 49 ETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMR 93 (102)
T ss_dssp SSCCCSSEEEECCSSHHHHHHHHHHHTTEEETTEEEEEEECCCCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEeCCCCC
Confidence 478999999999999999999999999999999999999998764
No 42
>2pe8_A Splicing factor 45; RRM, protein binding; 2.00A {Homo sapiens} PDB: 2peh_A
Probab=98.80 E-value=5e-09 Score=83.43 Aligned_cols=42 Identities=26% Similarity=0.326 Sum_probs=40.0
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
+++|||||||+|.+.++|.+|++.|||+.++||.|+|.++..
T Consensus 52 ~~~~~G~~FV~f~~~~~A~~Ai~~lnG~~~~Gr~i~v~~a~~ 93 (105)
T 2pe8_A 52 PDDEAVRIFLEFERVESAIKAVVDLNGRYFGGRVVKACFYNL 93 (105)
T ss_dssp CTTTSEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCH
T ss_pred CCCCcEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCH
Confidence 478999999999999999999999999999999999999974
No 43
>2ywk_A Putative RNA-binding protein 11; RRM-domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; 1.54A {Homo sapiens}
Probab=98.80 E-value=3.5e-09 Score=80.97 Aligned_cols=44 Identities=34% Similarity=0.706 Sum_probs=41.3
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
|.+|++||||||+|.+.++|++|++.|||..|+|++|+|.+++.
T Consensus 51 ~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~ 94 (95)
T 2ywk_A 51 DREGKPKSFGFVCFKHPESVSYAIALLNGIRLYGRPINVSGPSS 94 (95)
T ss_dssp CTTSCEEEEEEEEESSTHHHHHHHHHHTTCEETTEECEEECCCC
T ss_pred CCCCCCceEEEEEECCHHHHHHHHHHhCCCEECCCEEEEEEcCC
Confidence 55689999999999999999999999999999999999999864
No 44
>2cpz_A CUG triplet repeat RNA-binding protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2rq4_A 2rqc_A
Probab=98.80 E-value=2.5e-09 Score=85.01 Aligned_cols=46 Identities=43% Similarity=0.634 Sum_probs=42.9
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|++||||||+|.+.++|++||+.||+..|+|+.|+|.++.++..
T Consensus 62 ~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 107 (115)
T 2cpz_A 62 QTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKND 107 (115)
T ss_dssp SSCSEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEECCCCSCC
T ss_pred CCCCcCccEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcCCCCc
Confidence 3799999999999999999999999999999999999999987643
No 45
>3mdf_A Peptidyl-prolyl CIS-trans isomerase E; RRM domain, PHD finger, CYP33, MLL, RNA binding protein, ISO mRNA processing, mRNA splicing, nucleus; 1.85A {Homo sapiens} SCOP: d.58.7.1 PDB: 2kyx_A 3lpy_A*
Probab=98.79 E-value=4.5e-09 Score=78.58 Aligned_cols=42 Identities=33% Similarity=0.536 Sum_probs=40.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
.+|+++|||||+|.+.++|++|++.|||..|+|++|+|.+|+
T Consensus 44 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~ak 85 (85)
T 3mdf_A 44 ETEKHRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAK 85 (85)
T ss_dssp TTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred CCCccccEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcC
Confidence 578999999999999999999999999999999999999984
No 46
>1p27_B RNA-binding protein 8A; nuclear protein, mRNA splicing; 2.00A {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=2.6e-09 Score=83.44 Aligned_cols=45 Identities=24% Similarity=0.399 Sum_probs=42.2
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|+++|||||+|.+.++|++|++.|||..|+|+.|+|.+|.++.
T Consensus 60 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 104 (106)
T 1p27_B 60 RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRG 104 (106)
T ss_dssp TTSSEEEEEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEESEESS
T ss_pred CCCceeeEEEEEECCHHHHHHHHHHhcCCEECCcEEEEEeecCCC
Confidence 468999999999999999999999999999999999999998764
No 47
>1wel_A RNA-binding protein 12; structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.79 E-value=3.7e-09 Score=85.46 Aligned_cols=46 Identities=22% Similarity=0.372 Sum_probs=42.8
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
+.+|++||||||+|.+.++|++||+ |||..|+||.|.|.++.+++.
T Consensus 61 ~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~~ 106 (124)
T 1wel_A 61 GPNGKATGEGFVEFRNEADYKAALC-RHKQYMGNRFIQVHPITKKGM 106 (124)
T ss_dssp CTTSSEEEEEEEEBSSSHHHHHHHT-SCSBCSTTSCBEEEEECHHHH
T ss_pred CCCCCCCeEEEEEECCHHHHHHHHH-hCCCeECCcEEEEEECCHHHH
Confidence 4689999999999999999999999 999999999999999987654
No 48
>1fj7_A Nucleolin RBD1, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.79 E-value=1.6e-09 Score=84.01 Aligned_cols=45 Identities=22% Similarity=0.454 Sum_probs=41.8
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|++||||||+|.+.++|++||+ |||..|+|+.|+|.++.++..
T Consensus 53 ~~g~~~g~afV~f~~~~~a~~A~~-l~g~~~~g~~l~V~~a~~~~~ 97 (101)
T 1fj7_A 53 RTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGRDG 97 (101)
T ss_dssp EEETTTTEEEEEESSHHHHHHHHH-GGGCCBTTBCCEEECCSCCCC
T ss_pred CCCCcCcEEEEEECCHHHHHHHHh-cCCcEECCcEEEEEEcCCCCC
Confidence 368999999999999999999998 999999999999999987654
No 49
>3ulh_A THO complex subunit 4; nuclear protein, RNA binding, structural genomi center for structural genomics, JCSG, protein structure INI PSI-biology; 2.54A {Homo sapiens} PDB: 1no8_A
Probab=98.79 E-value=4.6e-09 Score=82.11 Aligned_cols=43 Identities=30% Similarity=0.482 Sum_probs=41.0
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
|.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|.++.
T Consensus 64 ~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~ 106 (107)
T 3ulh_A 64 DRSGRSLGTADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 106 (107)
T ss_dssp CTTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEEC
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEeC
Confidence 5689999999999999999999999999999999999999985
No 50
>2lmi_A GRSF-1, G-rich sequence factor 1; G-rich RNA sequence binding factor, RNA binding domain, STRU genomics, joint center for structural genomics, JCSG; NMR {Homo sapiens}
Probab=98.79 E-value=3.8e-09 Score=83.38 Aligned_cols=45 Identities=18% Similarity=0.333 Sum_probs=41.8
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
|.+|++||||||+|.+.++|++||+ +|+..|+||.|+|.++.+++
T Consensus 49 ~~~g~~~G~afV~F~~~~~a~~Al~-~~~~~~~gr~i~V~~a~~~~ 93 (107)
T 2lmi_A 49 NRDGKRRGDALIEMESEQDVQKALE-KHRMYMGQRYVEVYEINNED 93 (107)
T ss_dssp CTTSTTCSEEEEEBSSHHHHHHHHT-TTTCCSSSSCCCCEECCHHH
T ss_pred CCCCCEeeEEEEEECCHHHHHHHHH-hCcceeCCeEEEEEECCHHH
Confidence 5669999999999999999999999 99999999999999998754
No 51
>2ek1_A RNA-binding protein 12; RNA recognition motif, dimer, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.00A {Homo sapiens} PDB: 2ek6_A
Probab=98.78 E-value=6.1e-09 Score=79.59 Aligned_cols=43 Identities=37% Similarity=0.525 Sum_probs=40.2
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
.+|++||||||+|.+.++|++||+.||+..|+||.|+|.++..
T Consensus 52 ~~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~gr~l~v~~a~s 94 (95)
T 2ek1_A 52 EKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLSGPSS 94 (95)
T ss_dssp TTSCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCC-
T ss_pred CCCCEeeEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEeccC
Confidence 5789999999999999999999999999999999999998863
No 52
>2cq0_A Eukaryotic translation initiation factor 3 subunit 4; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.78 E-value=5.3e-09 Score=81.36 Aligned_cols=45 Identities=31% Similarity=0.482 Sum_probs=42.4
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++||+.|||..|+|+.|+|.++.++.
T Consensus 52 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (103)
T 2cq0_A 52 TTGQSKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPST 96 (103)
T ss_dssp SSCSEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred CCCceeeEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEECCCCC
Confidence 478999999999999999999999999999999999999998764
No 53
>2nlw_A Eukaryotic translation initiation factor 3 subunit 9; eukaryotic initiation factor 3 complex, RNA recognition motif; NMR {Homo sapiens}
Probab=98.78 E-value=2.1e-09 Score=84.60 Aligned_cols=44 Identities=32% Similarity=0.543 Sum_probs=41.5
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceeccc-ceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSK-PLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR-~L~V~~A~~k 46 (303)
++|++||||||+|.+.++|++||+.|||..|+|| +|+|.+|...
T Consensus 56 ~~g~~~G~afV~f~~~~~A~~Ai~~l~g~~~~g~~~l~V~~a~~~ 100 (105)
T 2nlw_A 56 EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVNLFTDF 100 (105)
T ss_dssp BTTBSCCEEEEEECSSSHHHHHHHHCSSEECSTTCEEEEECSCCC
T ss_pred CCCCeeeEEEEEECCHHHHHHHHHHhCCcccCCCceEEEEEcchH
Confidence 5799999999999999999999999999999999 9999999754
No 54
>2jrs_A RNA-binding protein 39; RNA binding motif of RBM39_human (caper), RRM2 domain, solution structure, structural genomics, PSI-2; NMR {Homo sapiens}
Probab=98.77 E-value=3.2e-09 Score=84.24 Aligned_cols=45 Identities=40% Similarity=0.722 Sum_probs=42.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++|++.|||..|+|+.|+|.++.++.
T Consensus 63 ~~g~~~g~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~k~ 107 (108)
T 2jrs_A 63 ETGRSKGYGFITFSDSECAKKALEQLNGFELAGRPMKVGHVTERT 107 (108)
T ss_dssp TTTEEEEEEEEEESCHHHHHHHHHHHTTCCSSSSCCEEECSCSSC
T ss_pred CCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEEcccCC
Confidence 478999999999999999999999999999999999999998774
No 55
>2db1_A Heterogeneous nuclear ribonucleoprotein F; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus}
Probab=98.77 E-value=4.4e-09 Score=84.72 Aligned_cols=45 Identities=24% Similarity=0.410 Sum_probs=41.6
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
|.+|++||||||+|.+.++|++||+ ||+..|+||.|+|.++.+++
T Consensus 55 ~~~g~~~G~afV~F~~~~~a~~Al~-~~g~~~~gr~i~V~~a~~~~ 99 (118)
T 2db1_A 55 TREGRQSGEAFVELESEDDVKLALK-KDRESMGHRYIEVFKSHRTE 99 (118)
T ss_dssp CSSSCEEEEEEEEBSSHHHHHHHGG-GTTEEETTEEEEEEEECHHH
T ss_pred CCCCCCCeEEEEEECCHHHHHHHHh-cCCCeECCeEEEEEECCHHH
Confidence 5669999999999999999999999 99999999999999997654
No 56
>1nu4_A U1A RNA binding domain; RNA recognition motif, U1 small nuclear ribonucleoprotein, R binding domain, RNA binding protein; HET: MLA; 1.80A {Homo sapiens} SCOP: d.58.7.1 PDB: 1drz_A* 1urn_A 3hhn_B* 3egz_A* 1zzn_A* 1u6b_A* 3cun_A* 3cul_A* 3g8s_A* 3g8t_A* 3g96_A* 3g9c_A* 3irw_P* 3mum_P* 3mur_P* 3mut_P* 3muv_P* 3mxh_P* 3p49_B 3r1h_A* ...
Probab=98.77 E-value=1.9e-09 Score=82.74 Aligned_cols=47 Identities=28% Similarity=0.372 Sum_probs=43.2
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~ 50 (303)
+|++||||||+|.+.++|++|++.|||..|+|+.|+|.++.++.+..
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~ 93 (97)
T 1nu4_A 47 SLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDII 93 (97)
T ss_dssp HHHHTTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSSCCTHH
T ss_pred CCCcCcEEEEEeCCHHHHHHHHHHhCCCEECCcEEEEEEccCCCccc
Confidence 46789999999999999999999999999999999999999876554
No 57
>2cpx_A Hypothetical protein FLJ11016; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=3.1e-09 Score=84.19 Aligned_cols=44 Identities=30% Similarity=0.451 Sum_probs=41.9
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
+|++||||||+|.+.++|++||+.|||..|+|+.|+|.++.++.
T Consensus 63 ~g~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 106 (115)
T 2cpx_A 63 TGRMRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKK 106 (115)
T ss_dssp CSSSCSEEEEECSSHHHHHHHHHHSTTCBCSSCBCEEEECCCCS
T ss_pred CCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEEccCCC
Confidence 68999999999999999999999999999999999999998764
No 58
>1x5u_A Splicing factor 3B subunit 4 (spliceosome associated protein 49) (SAP 49) (SF3B50)...; structure genomics,RRM domain,splicing factor 3B; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.77 E-value=4.6e-09 Score=81.84 Aligned_cols=44 Identities=34% Similarity=0.495 Sum_probs=42.0
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
+|++||||||+|.+.++|++||+.|||..|+|++|+|.++.++.
T Consensus 53 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 96 (105)
T 1x5u_A 53 TGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 96 (105)
T ss_dssp SCSBCSCEEEEESSHHHHHHHHHHSSSCBCSSCBCEEEETTTTS
T ss_pred CCcCCcEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 79999999999999999999999999999999999999998764
No 59
>2kt5_A RNA and export factor-binding protein 2; chaperone, mRNA processing, mRNA splicing, transport, nucleus, RNA-binding, spliceosome, transport; NMR {Mus musculus}
Probab=98.77 E-value=6.2e-09 Score=83.87 Aligned_cols=45 Identities=27% Similarity=0.434 Sum_probs=42.3
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
|.+|++||||||+|.+.++|++|++.|||..|+|++|+|.+|..+
T Consensus 70 ~~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 114 (124)
T 2kt5_A 70 DRSGRSLGTADVHFERRADALKAMKQYKGVPLDGRPMDIQLVASQ 114 (124)
T ss_dssp CSSSSCCSEEEEEESSHHHHHHHHHHHTTEESSSCEEEEEEECCT
T ss_pred CCCCCEeeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCC
Confidence 568999999999999999999999999999999999999999754
No 60
>2e5h_A Zinc finger CCHC-type and RNA-binding motif- containing protein 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=6.5e-09 Score=79.26 Aligned_cols=42 Identities=19% Similarity=0.385 Sum_probs=39.7
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
.+|++||||||+|.+.++|++|++.|||..|+|++|+|.+|+
T Consensus 53 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~ak 94 (94)
T 2e5h_A 53 DTRKSKGVAFILFLDKDSAQNCTRAINNKQLFGRVIKASIAI 94 (94)
T ss_dssp SSCCCTTCEEEEESCHHHHHHHHHHTTTEEETTEEEEEEECC
T ss_pred CCCCcccEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEecC
Confidence 368999999999999999999999999999999999999984
No 61
>1x5s_A Cold-inducible RNA-binding protein; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=4.2e-09 Score=81.69 Aligned_cols=45 Identities=36% Similarity=0.654 Sum_probs=42.3
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++||+.||+..|+|+.|+|.++.++.
T Consensus 49 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 93 (102)
T 1x5s_A 49 ETQRSRGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSS 93 (102)
T ss_dssp SSCSCCSEEEEECSSHHHHHHHHHHHTTCCTTSCCCEEEEEECCC
T ss_pred CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 478999999999999999999999999999999999999998764
No 62
>2dgv_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2dh9_A
Probab=98.76 E-value=4.3e-09 Score=79.97 Aligned_cols=45 Identities=38% Similarity=0.601 Sum_probs=42.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
++|++||||||+|.+.++|++|++.|||..|+|+.|+|.++.++.
T Consensus 43 ~~g~~~g~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~~ 87 (92)
T 2dgv_A 43 ENGKSKGCGVVKFESPEVAERACRMMNGMKLSGREIDVRIDRNAS 87 (92)
T ss_dssp SSSCEEEEEEEEESSHHHHHHHHHHHTTCCBTTBCCCCEECSCCS
T ss_pred cCCCcceEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 378999999999999999999999999999999999999998654
No 63
>2cqc_A Arginine/serine-rich splicing factor 10; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.76 E-value=7.1e-09 Score=79.05 Aligned_cols=43 Identities=28% Similarity=0.489 Sum_probs=40.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
.+|++||||||+|.+.++|++|++.|||..|+|++|+|.+++.
T Consensus 52 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~ 94 (95)
T 2cqc_A 52 QSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVSGPSS 94 (95)
T ss_dssp SSSSEEEEEEEEESSHHHHHHHHHHHTTEEETTEEEEEECCSC
T ss_pred CCCCcccEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEecCC
Confidence 4689999999999999999999999999999999999999874
No 64
>1fjc_A Nucleolin RBD2, protein C23; RNP, RRM, RNA binding domain, nucleolus, structural protein; NMR {Mesocricetus auratus} SCOP: d.58.7.1
Probab=98.76 E-value=4.5e-09 Score=80.61 Aligned_cols=45 Identities=29% Similarity=0.508 Sum_probs=42.2
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++|++.|||..|+|+.|+|.++.++.
T Consensus 48 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 92 (96)
T 1fjc_A 48 QDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKG 92 (96)
T ss_dssp ETTEEEEEEEEEESSHHHHHHHHHHTTEEEETTEEEEEEECSSSC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 478999999999999999999999999999999999999998764
No 65
>2dgo_A Cytotoxic granule-associated RNA binding protein 1; RRM domain, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rne_A 2dh7_A
Probab=98.76 E-value=7e-09 Score=82.22 Aligned_cols=45 Identities=36% Similarity=0.666 Sum_probs=42.3
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++||+.|||..|+|+.|+|.++.++.
T Consensus 52 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 96 (115)
T 2dgo_A 52 ATGKSKGYGFVSFFNKWDAENAIQQMGGQWLGGRQIRTNWATRKP 96 (115)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHTTTCEETTEECEEEESSCCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEccCCC
Confidence 489999999999999999999999999999999999999998763
No 66
>2do0_A HnRNP M, heterogeneous nuclear ribonucleoprotein M; RNA recognition motif, RRM, RNA binding domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.76 E-value=6.8e-09 Score=82.04 Aligned_cols=45 Identities=33% Similarity=0.666 Sum_probs=42.0
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
|.+|++||||||+|.+.++|++||+.|||..|+|+.|+|.++...
T Consensus 50 ~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~ 94 (114)
T 2do0_A 50 DKDGKSRGIGTVTFEQSIEAVQAISMFNGQLLFDRPMHVKMDERA 94 (114)
T ss_dssp CTTCSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCC
T ss_pred CCCCCeeeEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEcccC
Confidence 567999999999999999999999999999999999999998753
No 67
>2m2b_A RNA-binding protein 10; T-cell, JCSG, MPP, PSI-biology; NMR {Homo sapiens}
Probab=98.75 E-value=2.8e-09 Score=87.12 Aligned_cols=44 Identities=23% Similarity=0.394 Sum_probs=41.4
Q ss_pred CC-CCCcccEEEEEeCCHHHHHHHHHHhCCc----eecccceeeecccch
Q psy14476 2 SE-DGRSKGFGFVCFSSPEEATKAVTEMNGR----IIGSKPLYVALAQRK 46 (303)
Q Consensus 2 d~-tGkSkGfgFV~F~s~e~A~~Ai~~lnG~----~l~GR~L~V~~A~~k 46 (303)
|. +|++||||||+|.+. +|.+||+.|||. .|+||.|+|+++.++
T Consensus 60 d~~tg~~rG~aFV~f~~~-~a~~Ai~~l~g~~~~~~~~gr~l~V~~a~~~ 108 (131)
T 2m2b_A 60 DKQTQLNRGFAFIQLSTI-EAAQLLQILQALHPPLTIDGKTINVEFAKGS 108 (131)
T ss_dssp CSSSSSBCSCEEEECCHH-HHHHHHHHHTTCCCSCCGGGCCCCCEECCCS
T ss_pred cCCCCCcceEEEEEECCH-HHHHHHHHhcCCCCCccCCCEEEEEEECCCC
Confidence 44 899999999999999 999999999999 999999999999875
No 68
>2cph_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=7.1e-09 Score=80.91 Aligned_cols=45 Identities=27% Similarity=0.473 Sum_probs=42.4
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHh-CCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEM-NGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~l-nG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++||+.| |+..|+|+.|+|.++.++.
T Consensus 53 ~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~~g~~l~v~~a~~~~ 98 (107)
T 2cph_A 53 GTGAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEV 98 (107)
T ss_dssp SSCSSCSEEEEEESSHHHHHHHHHHHHTCCBSSSCBCEEEECCCCC
T ss_pred CCCCcCceEEEEECCHHHHHHHHHHhccCCeECCCEEEEEeCCCCC
Confidence 38999999999999999999999999 9999999999999998764
No 69
>2hgl_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative, splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kfy_A
Probab=98.75 E-value=4.2e-09 Score=87.80 Aligned_cols=45 Identities=24% Similarity=0.417 Sum_probs=41.9
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
|.+|+|||||||+|++.++|++||+ ||+..|+||.|+|.++.+++
T Consensus 82 d~~g~srG~aFV~F~~~e~a~~Al~-~~g~~l~gr~i~V~~a~~~e 126 (136)
T 2hgl_A 82 TREGRQSGEAFVELGSEDDVKMALK-KDRESMGHRYIEVFKSHRTE 126 (136)
T ss_dssp CSSSCEEEEEEEECSSHHHHHHHHT-TTEEESSSSEEEEEECCHHH
T ss_pred CCCCCCCeEEEEEECCHHHHHHHHh-cCCCEECCEEEEEEECChHH
Confidence 5669999999999999999999999 99999999999999997664
No 70
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.75 E-value=5.9e-09 Score=91.46 Aligned_cols=50 Identities=34% Similarity=0.714 Sum_probs=45.1
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHHH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~~ 53 (303)
++.+||||||+|.+.++|++||+.|||..|+||+|.|.+|.+++++..+.
T Consensus 139 ~~~~~g~~fV~f~~~~~a~~Ai~~lng~~~~g~~i~V~~a~~~~~~~~~~ 188 (213)
T 4f02_A 139 ENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAEL 188 (213)
T ss_dssp TTEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCHHHHHHHH
T ss_pred CCCCceEEEEEeCCHHHHHHHHHHhCCCEECCEEEEEEEcCCCcccchhh
Confidence 35689999999999999999999999999999999999999987765543
No 71
>2cpf_A RNA binding motif protein 19; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.75 E-value=5.2e-09 Score=80.57 Aligned_cols=44 Identities=34% Similarity=0.579 Sum_probs=41.1
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
||++||||||+|.+.++|++|++.|||..|+|+.|+|.++.++.
T Consensus 46 t~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 89 (98)
T 2cpf_A 46 VLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERAT 89 (98)
T ss_dssp CEEEEEEEEEEESSHHHHHHHHHHSTTCEETTEECEEECSSCSS
T ss_pred CcCcccEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEccCCC
Confidence 45999999999999999999999999999999999999998753
No 72
>2krb_A Eukaryotic translation initiation factor 3 subunit B; EIF3, eukaryotic initiation factor, EIF3B, EIF3J; NMR {Homo sapiens}
Probab=98.74 E-value=3.6e-09 Score=79.02 Aligned_cols=39 Identities=33% Similarity=0.629 Sum_probs=37.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceeccc-ceeee
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSK-PLYVA 41 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR-~L~V~ 41 (303)
++|++||||||+|.+.++|++|++.|||..|+|| +|+|+
T Consensus 42 ~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~~l~V~ 81 (81)
T 2krb_A 42 EDGKTKGYIFLEYASPAHAVDAVKNADGYKLDKQHTFRVN 81 (81)
T ss_dssp BTTBCCCEEEEEESSHHHHHHHHTTSSSCCCSSSSCCCCC
T ss_pred CCCcEeEEEEEEECCHHHHHHHHHHhcCcccCCceeEEeC
Confidence 5899999999999999999999999999999999 99884
No 73
>2dgs_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.74 E-value=7.7e-09 Score=79.85 Aligned_cols=45 Identities=31% Similarity=0.499 Sum_probs=41.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|++||||||+|.+.++|++||+ ||+..|+|+.|+|.++.++..
T Consensus 47 ~~~~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~l~V~~a~~~~~ 91 (99)
T 2dgs_A 47 EKQRPRGFGFITFEDEQSVDQAVN-MHFHDIMGKKVEVKRAEPRDS 91 (99)
T ss_dssp TTCSCCSEEEEEESSHHHHHHHHH-HCCCBSSSCBCEEEECCCCCC
T ss_pred CCCCCCceEEEEECCHHHHHHHHH-hCCCEECCeEEEEEECCCCcc
Confidence 478999999999999999999998 999999999999999987643
No 74
>2dng_A Eukaryotic translation initiation factor 4H; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.73 E-value=7.4e-09 Score=80.66 Aligned_cols=44 Identities=25% Similarity=0.568 Sum_probs=41.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++|+ .|||..|+|+.|+|.++.++.
T Consensus 51 ~~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~ 94 (103)
T 2dng_A 51 DTDKFKGFCYVEFDEVDSLKEAL-TYDGALLGDRSLRVDIAEGRK 94 (103)
T ss_dssp SSCSEEEEEEEEESSHHHHHHHG-GGTTCEETTEECEEEECCCCC
T ss_pred CCCccceEEEEEECCHHHHHHHH-hhCCCeECCeEEEEEEecCCC
Confidence 36999999999999999999999 899999999999999998764
No 75
>1u6f_A Tcubp1, RNA-binding protein UBP1; trypanosome, mRNA-binding protein, GU-rich RNA, structure; NMR {Trypanosoma cruzi} SCOP: d.58.7.1
Probab=98.73 E-value=4.1e-09 Score=86.33 Aligned_cols=46 Identities=41% Similarity=0.553 Sum_probs=42.7
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|++||||||+|.+.++|++||+.|||..|+|+.|+|.++..+..
T Consensus 79 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 124 (139)
T 1u6f_A 79 ETRQSRGYGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQ 124 (139)
T ss_dssp TTTEEEEEEEEEESSHHHHHHHHHHTTTEECSSCEEEEEESSCCCC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCCC
Confidence 3689999999999999999999999999999999999999987643
No 76
>2kxn_B Transformer-2 protein homolog beta; SR protein, RRM, splicing factor, RNA protein complex, SMN, binding protein-RNA complex; NMR {Homo sapiens} PDB: 2rra_A 2rrb_A
Probab=98.73 E-value=5.1e-09 Score=85.91 Aligned_cols=45 Identities=29% Similarity=0.522 Sum_probs=42.4
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++||+.|||..|+|++|+|.++.++.
T Consensus 83 ~tg~~~G~afV~F~~~~~A~~Ai~~lng~~i~g~~l~V~~a~~~~ 127 (129)
T 2kxn_B 83 QSRRSRGFAFVYFENVDDAKEAKERANGMELDGRRIRVDFSITKR 127 (129)
T ss_dssp SSSCCCCEEEEEESCHHHHHHHHHHHTTCCSSSSCCEESCCSSSS
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCC
Confidence 478999999999999999999999999999999999999998764
No 77
>1wg5_A Heterogeneous nuclear ribonucleoprotein H; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.73 E-value=6.5e-09 Score=81.58 Aligned_cols=45 Identities=36% Similarity=0.448 Sum_probs=41.7
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
|.+|++||||||+|.+.++|++||+. |+..|+||.|.|.++.+++
T Consensus 51 ~~~g~~~G~afV~F~~~~~a~~A~~~-~~~~~~gr~i~v~~~~~~~ 95 (104)
T 1wg5_A 51 DFQGRSTGEAFVQFASQEIAEKALKK-HKERIGHRYIEIFKSSRAE 95 (104)
T ss_dssp CSSSCBCSEEEEEESSHHHHHHHHTT-TTCCSSSSCCEEEEECTTT
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHh-CcchhCCcEEEEEECCHHH
Confidence 67899999999999999999999998 9999999999999987653
No 78
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.73 E-value=1e-08 Score=92.86 Aligned_cols=57 Identities=25% Similarity=0.402 Sum_probs=52.5
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHHHHHHHH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYM 58 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~~~~~~~ 58 (303)
|.+|+++|||||+|.+.++|.+|++.|||..|+|++|.|.|+.++..++..+.++..
T Consensus 220 ~~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~~~~~~a 276 (284)
T 3smz_A 220 GQDGQLKGFAVLEYETAEMAEEAQQQADGLSLGGSHLRVSFCAPGPPGRSMLAALIA 276 (284)
T ss_dssp CSSCCEEEEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCSSSCHHHHHHHHHH
T ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCCccCCeEEEEEEecCCCcccchhhhhhH
Confidence 568999999999999999999999999999999999999999999988887766654
No 79
>2dis_A Unnamed protein product; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=6.8e-09 Score=81.41 Aligned_cols=46 Identities=22% Similarity=0.303 Sum_probs=41.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhC--CceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMN--GRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~ln--G~~l~GR~L~V~~A~~k~~ 48 (303)
.+|++||||||+|.+.++|++|++.|| +..|+|+.|+|.+|.++.+
T Consensus 47 ~~g~~~g~afV~f~~~~~A~~A~~~l~~g~~~~~g~~l~V~~a~~~~~ 94 (109)
T 2dis_A 47 DKMKNRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEID 94 (109)
T ss_dssp TTTTTCCEEEEEESSHHHHHHHHTTTTTCCSCBTTBCCEEEESCSSCS
T ss_pred CCCCcCcEEEEEecCHHHHHHHHHHhhCCCceecCCeEEEEEcCCCCC
Confidence 368999999999999999999999996 5899999999999987643
No 80
>2khc_A Testis-specific RNP-type RNA binding protein; RRM, RNA recognition motif, bruno; NMR {Drosophila melanogaster}
Probab=98.72 E-value=6.6e-09 Score=82.76 Aligned_cols=42 Identities=43% Similarity=0.682 Sum_probs=39.5
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
.+|++||||||+|.+.++|++||+.|||..|+|+.|+|.+++
T Consensus 77 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~ak 118 (118)
T 2khc_A 77 QTSLSKCFGFVSFDNPDSAQVAIKAMNGFQVGTKRLKVQLKK 118 (118)
T ss_dssp SSSCCCCEEEEEEESSHHHHHHHHHCCCCEETTEECCEEEC-
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecC
Confidence 478999999999999999999999999999999999999874
No 81
>1wez_A HnRNP H', FTP-3, heterogeneous nuclear ribonucleoprotein H'; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.72 E-value=4.2e-09 Score=82.96 Aligned_cols=44 Identities=23% Similarity=0.259 Sum_probs=40.7
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
|.+|++||||||+|.+.++|++|| ++|+..|+||.|.|.++...
T Consensus 49 d~~g~~~G~afV~F~~~~~a~~Al-~~~~~~~~gr~i~V~~~~~~ 92 (102)
T 1wez_A 49 GPDGRVTGEADVEFATHEDAVAAM-AKDKANMQHRYVELFLNSTA 92 (102)
T ss_dssp SSSSCEEEEEEEECSSSHHHHHHH-TTSSCCSSSSCCEEEEECCC
T ss_pred CCCCCEeeEEEEEECCHHHHHHHH-HhCCCeECCcEEEEEECCCC
Confidence 678999999999999999999999 57999999999999988754
No 82
>3egn_A RNA-binding protein 40; RNA recognition motif (RRM), RNP motif, U11/U12-65K protein, DI-snRNP, U1A protein, U2B protein; 2.50A {Homo sapiens}
Probab=98.72 E-value=6.5e-09 Score=85.78 Aligned_cols=47 Identities=32% Similarity=0.569 Sum_probs=42.8
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r 49 (303)
.+|++||||||+|.+.++|.+||+.|||..|+|++|+|.+|+.+..+
T Consensus 87 ~~g~~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 133 (143)
T 3egn_A 87 KEGRMKGQAFIGLPNEKAAAKALKEANGYVLFGKPMVVQFARSARPK 133 (143)
T ss_dssp EETTTEEEEEEECSSHHHHHHHHHHHTTBEETTEECEEEECCCSCC-
T ss_pred cCCCcccEEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCCCc
Confidence 47999999999999999999999999999999999999999865443
No 83
>2dnm_A SRP46 splicing factor; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.72 E-value=5.7e-09 Score=81.17 Aligned_cols=44 Identities=27% Similarity=0.464 Sum_probs=41.5
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.+|++||||||+|.+.++|++||+.|||..|+|+.|.|.++..+
T Consensus 50 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 93 (103)
T 2dnm_A 50 HTKAPRGFAFVRFHDRRDAQDAEAAMDGAELDGRELRVQVARYG 93 (103)
T ss_dssp SSCSBCSCEEEEESSSSHHHHHHHHHSSCCBTTBCCEEEECSSC
T ss_pred CCCCCCeEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEECCcC
Confidence 36899999999999999999999999999999999999999865
No 84
>1x4h_A RNA-binding protein 28; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.72 E-value=6.9e-09 Score=81.49 Aligned_cols=46 Identities=28% Similarity=0.465 Sum_probs=42.7
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhC------CceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMN------GRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~ln------G~~l~GR~L~V~~A~~k~~ 48 (303)
.+|++||||||+|.+.++|++||+.|| +..|+|+.|+|.++.++..
T Consensus 52 ~~g~~~g~afV~f~~~~~A~~A~~~~~~~~~~~~~~~~g~~l~v~~a~~~~~ 103 (111)
T 1x4h_A 52 DTEHSKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDE 103 (111)
T ss_dssp SSCCBCSEEEEEESSHHHHHHHHHHHCTTTTTCCEESSSCEEEEECCCCCCC
T ss_pred CCCCCccEEEEEECCHHHHHHHHHHhccccccCCcEEcCEEEEEEECCCCcc
Confidence 468999999999999999999999999 9999999999999987643
No 85
>2cq4_A RNA binding motif protein 23; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=6.3e-09 Score=82.52 Aligned_cols=45 Identities=27% Similarity=0.467 Sum_probs=41.7
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r 49 (303)
+|++||||||+|.+.++|++|| .|||..|+|+.|+|.++..+..+
T Consensus 63 ~g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~~ 107 (114)
T 2cq4_A 63 SRRSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNR 107 (114)
T ss_dssp SSSCCCCEEEEESCGGGHHHHH-HHTTEEETTEEEEEEEHHHHHHH
T ss_pred CCccCcEEEEEeCcHHHHHHHH-HcCCCEeCCeEEEEEecCCCccC
Confidence 5899999999999999999999 99999999999999999876544
No 86
>2jvr_A Nucleolar protein 3; RNA recognition motif, nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding; NMR {Saccharomyces cerevisiae} PDB: 2osr_A
Probab=98.71 E-value=1e-08 Score=82.63 Aligned_cols=43 Identities=19% Similarity=0.164 Sum_probs=39.2
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
+++||||||+|.+.++|++||+.|||..|+||.|+|.++..+.
T Consensus 64 ~~~rGfaFV~F~~~e~A~~Ai~~lng~~l~Gr~i~V~~a~~~p 106 (111)
T 2jvr_A 64 RDFDGTGALEFPSEEILVEALERLNNIEFRGSVITVERDDNPP 106 (111)
T ss_dssp CSSSCCEEEEESSHHHHHHHHHHTTTEEETTEEEEEEESCC--
T ss_pred CCCCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCCC
Confidence 4689999999999999999999999999999999999998653
No 87
>1s79_A Lupus LA protein; RRM, alpha/beta, RNA binding protein, translation; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.71 E-value=1e-08 Score=81.08 Aligned_cols=45 Identities=27% Similarity=0.220 Sum_probs=40.9
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
|.+|+|||||||+|.+.++|++||+ +||..|+|+.|.|.++....
T Consensus 46 d~~g~~rG~aFV~F~~~e~a~~Ai~-~~~~~~~gr~l~V~~~~~~~ 90 (103)
T 1s79_A 46 TLHKAFKGSIFVVFDSIESAKKFVE-TPGQKYKETDLLILFKDDYF 90 (103)
T ss_dssp CCTTSCCCEEEEEESSHHHHHHHHT-SSCCCCTTTTCEEEEHHHHH
T ss_pred CCCCCCccEEEEEECCHHHHHHHHH-cCCCEECCEEEEEEEchHHH
Confidence 5569999999999999999999999 89999999999999877543
No 88
>2lcw_A RNA-binding protein FUS; RRM, nucleic acid binding protein; NMR {Homo sapiens}
Probab=98.17 E-value=1.5e-09 Score=86.48 Aligned_cols=47 Identities=32% Similarity=0.541 Sum_probs=43.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r 49 (303)
.+|++||||||+|.+.++|++||+.|||..|+|++|+|.++.++..+
T Consensus 52 ~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~ 98 (116)
T 2lcw_A 52 ETGKLKGEATVSFDDPPSAKAAIDWFDGKEFSGNPIKVSFATRRADF 98 (116)
Confidence 47899999999999999999999999999999999999999877544
No 89
>4a8x_A RNA-binding protein with serine-rich domain 1; transcription, splicing, RNA processing, nonsense mediated D NMD, HDAC, histone deacetylation; 1.90A {Homo sapiens}
Probab=98.71 E-value=4.3e-09 Score=79.02 Aligned_cols=42 Identities=31% Similarity=0.495 Sum_probs=39.4
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
+++|||||+|.+.++|++|++.|||..|+|+.|+|.++.+..
T Consensus 45 ~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 86 (88)
T 4a8x_A 45 LSKGYAYVEFENPDEAEKALKHMDGGQIDGQEITATAVLAPW 86 (88)
T ss_dssp EECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECCCC
T ss_pred CCCcEEEEEEecHHHHHHHHHHcCCCeECCeEEEEEECCCCC
Confidence 489999999999999999999999999999999999997653
No 90
>2ki2_A SS-DNA binding protein 12RNP2; HP0827, RRM, SS-DNA binding proteins, RNA binding protein/SS-DNA binding protein complex; NMR {Helicobacter pylori}
Probab=98.71 E-value=6.9e-09 Score=78.64 Aligned_cols=44 Identities=25% Similarity=0.449 Sum_probs=38.5
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.+ |.+|+..|||..++|++|+|.+|..+.
T Consensus 38 ~~~~~~g~afV~f~~~~-a~~a~~~l~g~~~~g~~l~V~~a~~~~ 81 (90)
T 2ki2_A 38 ETKKPKGFGFVEMQEES-VSEAIAKLDNTDFMGRTIRVTEANPKK 81 (90)
T ss_dssp SSCCCCEEEEEEECTTH-HHHHHHTSCSSCCSSSSCSEEEC----
T ss_pred CCCCcceEEEEEECCHH-HHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 36999999999999999 999999999999999999999998754
No 91
>2e5j_A Methenyltetrahydrofolate synthetase domain containing; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.70 E-value=6.9e-09 Score=80.08 Aligned_cols=44 Identities=25% Similarity=0.385 Sum_probs=40.9
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
++++||||||+|.+.++|++|++.|||..|+|+.|+|.++.++.
T Consensus 52 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 95 (97)
T 2e5j_A 52 WQGPRRRAFLHYPDSAAAQQAVSCLQGLRLGTDTLRVALARQQR 95 (97)
T ss_dssp EETTTTEEEEECSSHHHHHHHHHHHTTCCSSSSCCEEEECCCCC
T ss_pred cCCCCcEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCCCC
Confidence 35789999999999999999999999999999999999998764
No 92
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=98.70 E-value=1.1e-08 Score=85.43 Aligned_cols=45 Identities=29% Similarity=0.527 Sum_probs=42.4
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++||+.|||..|+|++|+|.+|.++.
T Consensus 107 ~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 151 (158)
T 2kn4_A 107 YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 151 (158)
T ss_dssp SCTTSCCEEEEEESBHHHHHHHHHHSTTEESSSSEEEEEEECCSS
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 489999999999999999999999999999999999999998754
No 93
>3ue2_A Poly(U)-binding-splicing factor PUF60; RNA recognition motif, RRM, RNA binding domain, ST genomics, joint center for structural genomics, JCSG; HET: MSE; 1.23A {Homo sapiens} SCOP: d.58.7.0 PDB: 3us5_A 2dny_A
Probab=98.70 E-value=1.1e-08 Score=83.35 Aligned_cols=43 Identities=28% Similarity=0.350 Sum_probs=40.4
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
++++++||+||+|.+.++|.+|++.|||+.++||.|+|.++..
T Consensus 66 ~~~~~~G~~FV~F~~~e~A~~Ai~~LnGr~f~GR~i~v~~~~~ 108 (118)
T 3ue2_A 66 EDAEIIVKIFVEFSIASETHKAIQALNGRWFAGRKVVAEVYDQ 108 (118)
T ss_dssp TTCEEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred cCCcceEEEEEEECCHHHHHHHHHHHCCCEECCcEEEEEEcCh
Confidence 4678999999999999999999999999999999999999864
No 94
>1wi8_A EIF-4B, eukaryotic translation initiation factor 4B; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.70 E-value=7.1e-09 Score=80.90 Aligned_cols=43 Identities=30% Similarity=0.554 Sum_probs=40.7
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
|++||||||+|.+.++|++|| .||+..|+|+.|+|.++.++..
T Consensus 54 g~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~~~ 96 (104)
T 1wi8_A 54 ERLKGFGYAEFEDLDSLLSAL-SLNEESLGNKRIRVDVADQAQD 96 (104)
T ss_dssp TSBCSCEEEEESSHHHHHHHH-GGGTCEETTEECEEEECCCCCC
T ss_pred CCcCeEEEEEECCHHHHHHHH-hcCCCEeCCcEEEEEEccCCCC
Confidence 899999999999999999999 9999999999999999987653
No 95
>2mss_A Protein (musashi1); RNA-binding domain, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1 PDB: 2mst_A
Probab=98.70 E-value=9.1e-09 Score=75.35 Aligned_cols=40 Identities=30% Similarity=0.428 Sum_probs=37.7
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A 43 (303)
.+|++||||||+|.+.++|++|++ |||..|+|++|.|.+|
T Consensus 36 ~~~~~~g~afV~f~~~~~a~~a~~-~~~~~~~g~~l~v~~A 75 (75)
T 2mss_A 36 TTNRHRGFGFVTFESEDIVEKVCE-IHFHEINNKMVECKKA 75 (75)
T ss_dssp SSTTSCBEEEEECSCHHHHHHHHS-SSCCCSSSCCCEEECC
T ss_pred CCCCcCcEEEEEECCHHHHHHHHH-CCCCEECCEEEEEEeC
Confidence 379999999999999999999997 9999999999999986
No 96
>2div_A TRNA selenocysteine associated protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.70 E-value=1.2e-08 Score=78.70 Aligned_cols=44 Identities=23% Similarity=0.379 Sum_probs=41.3
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccc----eeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKP----LYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~----L~V~~A~~k 46 (303)
.+|++||||||+|.+.++|++|++.|||..|+|+. |+|.||...
T Consensus 47 ~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~l~v~~a~~~ 94 (99)
T 2div_A 47 LTGIPAGYCFVEFADLATAEKCLHKINGKPLPGATPAKRFKLNYATYS 94 (99)
T ss_dssp SSCCEEEEEEEECSCHHHHHHHHHTTTTSEESSCSSCEECCEEETTCC
T ss_pred CCCCcCCEEEEEeCCHHHHHHHHHHHcCCccCCCCcceeEEEeecCCC
Confidence 47999999999999999999999999999999999 999999754
No 97
>2dgp_A Bruno-like 4, RNA binding protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dgq_A
Probab=98.69 E-value=8.7e-09 Score=80.39 Aligned_cols=45 Identities=24% Similarity=0.369 Sum_probs=41.7
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCcee---cccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRII---GSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l---~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++||+.|||..+ .|++|+|.++..+.
T Consensus 50 ~~g~~~g~afV~f~~~~~A~~A~~~l~g~~~~~~~g~~l~v~~a~~~~ 97 (106)
T 2dgp_A 50 FTGMHKGCAFLTYCERESALKAQSALHEQKTLPGMNRPIQVKPADSES 97 (106)
T ss_dssp SSCSCCSEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECCCCS
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhcCCcccCCCCceEEEEECCccc
Confidence 3699999999999999999999999999998 89999999998764
No 98
>2dgx_A KIAA0430 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.69 E-value=1.5e-08 Score=78.22 Aligned_cols=40 Identities=28% Similarity=0.288 Sum_probs=38.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
||||||+|.+.++|++||+.|||..|+||+|+|.+|+++.
T Consensus 52 rg~afV~f~~~~~A~~Ai~~l~g~~~~gr~l~V~~a~~~~ 91 (96)
T 2dgx_A 52 QLKAVVQMENLQDAIGAVNSLHRYKIGSKKILVSLATGAS 91 (96)
T ss_dssp TCCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCSS
T ss_pred CeEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEcCCCC
Confidence 8999999999999999999999999999999999998653
No 99
>1x5o_A RNA binding motif, single-stranded interacting protein 1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.68 E-value=1.3e-08 Score=80.58 Aligned_cols=45 Identities=27% Similarity=0.559 Sum_probs=41.3
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCcee--------cccceeeecccch
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRII--------GSKPLYVALAQRK 46 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l--------~GR~L~V~~A~~k 46 (303)
|.+|++||||||+|.+.++|++|++.|||..| .+++|.|.||.++
T Consensus 60 ~~~g~~~g~afV~f~~~~~a~~A~~~l~g~~~~~~~~~~~~~~~l~v~~a~p~ 112 (114)
T 1x5o_A 60 DSSGTSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTEPLLCKFSGPS 112 (114)
T ss_dssp CSSSCEEEEEEEEESCHHHHHHHHHHHBTCCCCCCTTSCCCSSCBEEEECCCS
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhCCCEEcCCccccCCCCceeEEccCCC
Confidence 55899999999999999999999999999999 5788999999865
No 100
>3ucg_A Polyadenylate-binding protein 2; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative; HET: PGE; 1.95A {Homo sapiens} PDB: 3b4d_A 3b4m_A
Probab=98.68 E-value=1.3e-08 Score=76.73 Aligned_cols=43 Identities=19% Similarity=0.427 Sum_probs=40.4
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.+|+++|||||+|.+.++|++|+ .|||..|+|+.|+|.+++.+
T Consensus 43 ~~~~~~g~afV~f~~~~~a~~a~-~~~g~~~~g~~l~V~~a~~~ 85 (89)
T 3ucg_A 43 FSGHPKGFAYIEFSDKESVRTSL-ALDESLFRGRQIKVIPKRTN 85 (89)
T ss_dssp SSSSCCEEEEEEESSTHHHHHHG-GGTTCEETTEECEEEETTTT
T ss_pred CCCCcceEEEEEECCHHHHHHHH-hcCCCEECCcEEEEEEccCC
Confidence 47999999999999999999999 99999999999999998754
No 101
>3v4m_A Splicing factor U2AF 65 kDa subunit; canonical RNA binding protein, RNA splicing, structural GENO joint center for structural genomics, JCSG; HET: MSE; 1.80A {Mus musculus} PDB: 1o0p_A 1opi_A
Probab=98.68 E-value=1.8e-08 Score=80.08 Aligned_cols=42 Identities=21% Similarity=0.250 Sum_probs=39.4
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
++++||+||+|.+.++|.+|++.|||+.++||.|.|.++...
T Consensus 56 ~~~~G~~fV~f~~~~~A~~Ai~~lnG~~f~GR~i~v~~~~~~ 97 (105)
T 3v4m_A 56 VPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPD 97 (105)
T ss_dssp CTTTTEEEEEESSHHHHHHHHHHHTTCEETTEECEEEEECHH
T ss_pred cCCcEEEEEEECCHHHHHHHHHHhCCCEeCCCEEEEEEeCHH
Confidence 478999999999999999999999999999999999998654
No 102
>3ex7_B RNA-binding protein 8A; protein-RNA complex, mRNA processing, mRNA splicing, mRNA transport, nonsense-mediated mRNA decay, nucleus; HET: ADP; 2.30A {Homo sapiens} PDB: 2j0q_D*
Probab=98.68 E-value=1.4e-08 Score=81.81 Aligned_cols=46 Identities=24% Similarity=0.385 Sum_probs=42.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|+++|||||+|.+.++|++||+.|||..|+|+.|+|.+|..+..
T Consensus 59 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 104 (126)
T 3ex7_B 59 RTGYLKGYTLVEYETYKEAQAAMEGLNGQDLMGQPISVDWCFVRGP 104 (126)
T ss_dssp TTSSBCSCEEEEESSHHHHHHHHHHHTTCBSSSSBCEEEESEESSS
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCeeCCeEEEEEEecCCCC
Confidence 3899999999999999999999999999999999999999986543
No 103
>2cq3_A RNA-binding protein 9; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.67 E-value=2.5e-08 Score=77.47 Aligned_cols=43 Identities=30% Similarity=0.562 Sum_probs=40.0
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
+.++|||||+|.+.++|++||+.|||..|+|+.|+|.++.++.
T Consensus 52 ~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 94 (103)
T 2cq3_A 52 RGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARV 94 (103)
T ss_dssp TTTCCEEEEEESCHHHHHHHHHHHTTCEETTEECEEEECCSSC
T ss_pred CCCcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEcccCC
Confidence 3489999999999999999999999999999999999998753
No 104
>2dha_A FLJ20171 protein; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.66 E-value=1.1e-08 Score=83.89 Aligned_cols=47 Identities=26% Similarity=0.384 Sum_probs=42.5
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r 49 (303)
|.+|++||||||+|.+.++|++||+. |++.|+||.|.|..+.+++..
T Consensus 62 d~~gr~~G~aFV~F~~~~~A~~Al~~-~~~~l~gR~i~V~~a~~~e~~ 108 (123)
T 2dha_A 62 YPDGRPTGDAFVLFACEEYAQNALRK-HKDLLGKRYIELFRSTAAEVQ 108 (123)
T ss_dssp CTTSCEEEEEEECCSSHHHHHHHHTT-TTEESSSCEECCEEECHHHHH
T ss_pred CCCCCEeeEEEEEECCHHHHHHHHHh-CCCeeCCeEEEEEECCHHHHH
Confidence 67899999999999999999999986 999999999999998765433
No 105
>1x4a_A Splicing factor, arginine/serine-rich 1 (splicing factor 2, alternate splicing factor)...; structure genomics, SURP domain, splicing factor SF2; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.66 E-value=1.9e-08 Score=79.05 Aligned_cols=45 Identities=24% Similarity=0.319 Sum_probs=41.4
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.++++||||||+|.+.++|++||+.||+..|+|+.|+|.++..+.
T Consensus 56 ~~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~ 100 (109)
T 1x4a_A 56 NRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFPRSGR 100 (109)
T ss_dssp CSSSSSCCEEEEESCHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred ECCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEcccCC
Confidence 356789999999999999999999999999999999999998653
No 106
>2la4_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNA recognition, stress granules, nucleus, RNA-binding, transcription; NMR {Saccharomyces cerevisiae}
Probab=98.66 E-value=1.6e-08 Score=78.38 Aligned_cols=41 Identities=15% Similarity=0.296 Sum_probs=38.9
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
++||||||+|.+.++|++|++.|||..|+|+.|+|.||+++
T Consensus 61 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 101 (101)
T 2la4_A 61 PEKGCCFIKYDTHEQAAVCIVALANFPFQGRNLRTGWGKER 101 (101)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCEETTEECCCCBCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEeccCC
Confidence 57999999999999999999999999999999999999864
No 107
>3lqv_A PRE-mRNA branch site protein P14; cysless mutant, PRE-mRNA splicing, adenine, mRNA processing, nucleus, phosphoprotein, RNA-binding; HET: ADE; 2.38A {Homo sapiens} SCOP: d.58.7.1 PDB: 2f9d_A 2f9j_A 2fho_B
Probab=98.65 E-value=4.5e-08 Score=77.49 Aligned_cols=45 Identities=18% Similarity=0.299 Sum_probs=41.4
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
+++++|||||+|.+.++|.+|++.|||..|+|+.|.|.++.++..
T Consensus 43 ~~~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~~ 87 (115)
T 3lqv_A 43 TPETRGTAYVVYEDIFDAKNAVDHLSGFNVSNRYLVVLYYNANRA 87 (115)
T ss_dssp STTTTTCEEEEESSHHHHHHHHHHHTTCBSSSCBCEEEECCHHHH
T ss_pred CCCCCcEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCChh
Confidence 477899999999999999999999999999999999999986543
No 108
>2err_A Ataxin-2-binding protein 1; protein-RNA complex, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=1.7e-08 Score=79.89 Aligned_cols=43 Identities=30% Similarity=0.597 Sum_probs=40.2
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.+++||||||+|.+.++|++|++.|||..|+|+.|+|.++.++
T Consensus 65 ~~~~kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 107 (109)
T 2err_A 65 ERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATAR 107 (109)
T ss_dssp TTBCTTEEEEECCCSHHHHHHHHHHTTCEETTEECEEEECCCS
T ss_pred CCCCceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCC
Confidence 3568999999999999999999999999999999999999875
No 109
>2cqi_A Nucleolysin TIAR; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, ST genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.65 E-value=2.8e-08 Score=77.19 Aligned_cols=45 Identities=29% Similarity=0.361 Sum_probs=40.9
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+.+||||||+|.+.++|++|++.|||..|+|+.|+|.++..+..
T Consensus 51 ~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~~ 95 (103)
T 2cqi_A 51 HTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSS 95 (103)
T ss_dssp CCSSCCEEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCTTC
T ss_pred CCCCCCEEEEEECCHHHHHHHHHHhCCCCcCCCeEEEEECCCCcc
Confidence 345799999999999999999999999999999999999987643
No 110
>3q2s_C Cleavage and polyadenylation specificity factor S; CFIM, CFIM25, CFIM68, CPSF5, CPSF6, CPSF, 3' END processing, processing, cleavage factor; 2.90A {Homo sapiens} PDB: 3q2t_C
Probab=98.64 E-value=1.5e-08 Score=91.09 Aligned_cols=46 Identities=22% Similarity=0.278 Sum_probs=43.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|+|||||||+|.+.++|++||+.||++.|+||.|+|.+|.++..
T Consensus 107 ~tg~skGfaFV~f~~~~~a~~Ai~~lng~~~~Gr~l~V~~a~~~~~ 152 (229)
T 3q2s_C 107 ANGQSKGFALVGVGSEASSKKLMDLLPKRELHGQNPVVTPVNKQFL 152 (229)
T ss_dssp TTCCEEEEEEEEESCTTHHHHHHTTSTTSCBTTBCCEEEECCHHHH
T ss_pred CCCccceEEEEEECCHHHHHHHHHHcCCCeECCEEeEEEECCCCcc
Confidence 4899999999999999999999999999999999999999987643
No 111
>1h2v_Z 20 kDa nuclear CAP binding protein; CAP-binding-complex, RNP domain, MIF4G domain, RNA maturation, RNA export, nuclear protein, RNA-binding; 2.0A {Homo sapiens} SCOP: d.58.7.1 PDB: 1h2u_X* 1h2t_Z 1n52_B* 1n54_B 3fex_B 3fey_B 1h6k_X
Probab=98.63 E-value=1.9e-08 Score=84.12 Aligned_cols=45 Identities=20% Similarity=0.269 Sum_probs=42.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++||+.||+..|+|+.|+|.||..+.
T Consensus 76 ~~~~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~ 120 (156)
T 1h2v_Z 76 MKKTACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFK 120 (156)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHTTTSEETTEECEEEEESCCC
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEECCCCC
Confidence 368999999999999999999999999999999999999998654
No 112
>1rk8_A CG8781-PA, CG8781-PA protein; mRNA processing, RRM, RBD, NMD, oskar mRNA localization, translation; 1.90A {Drosophila melanogaster} SCOP: d.58.7.1 PDB: 1hl6_A 2x1g_A
Probab=98.63 E-value=2.2e-08 Score=84.78 Aligned_cols=48 Identities=25% Similarity=0.367 Sum_probs=42.9
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~ 50 (303)
.+|+++|||||+|.+.++|.+||+.|||..|.|++|.|.|+..+..+.
T Consensus 109 ~~g~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~~~ 156 (165)
T 1rk8_A 109 RTGFSKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVKGPKR 156 (165)
T ss_dssp TTSSEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEESEECC---
T ss_pred CCCcEeeEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEecCCCCCC
Confidence 479999999999999999999999999999999999999999776543
No 113
>1x5p_A Negative elongation factor E; structure genomics, RRM domain, PARP14, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.62 E-value=2.9e-08 Score=76.53 Aligned_cols=43 Identities=30% Similarity=0.482 Sum_probs=40.1
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
+++||||||+|.+.++|++||+.|||..|+|++|+|.++.++.
T Consensus 46 ~~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~v~~a~~~~ 88 (97)
T 1x5p_A 46 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQP 88 (97)
T ss_dssp ETTTTEEEEEESSHHHHHHHHHHTTTEEETTEEEEEECCSSCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEECCCCC
Confidence 3689999999999999999999999999999999999998753
No 114
>2hgm_A HNRPF protein, heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg0_A
Probab=98.62 E-value=1.2e-08 Score=84.11 Aligned_cols=46 Identities=30% Similarity=0.426 Sum_probs=41.3
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 1 ~d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
+|.+|++||||||+|.+.++|++||+. ++..|+||.|+|.++.+++
T Consensus 77 ~d~~GrsrGfaFV~F~~~e~A~~Al~~-~~~~l~gR~I~V~~a~~~e 122 (126)
T 2hgm_A 77 VDPEGKITGEAFVQFASQELAEKALGK-HKERIGHRYIEVFKSSQEE 122 (126)
T ss_dssp CCSSSSSCSEEEEEESSTTHHHHHHTT-TTCCBTTBCCCCEEECHHH
T ss_pred ECCCCCCceEEEEEECCHHHHHHHHHH-CCCEECCEEEEEEECCHHH
Confidence 366799999999999999999999985 7899999999999987654
No 115
>1wg1_A KIAA1579 protein, homolog EXC-7; RBD, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wi6_A
Probab=98.61 E-value=2.4e-08 Score=75.78 Aligned_cols=41 Identities=27% Similarity=0.316 Sum_probs=38.6
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
++||||||+|.+.++|++|++.|||..++|++|+|.++..+
T Consensus 38 ~~~g~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~ 78 (88)
T 1wg1_A 38 RNKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78 (88)
T ss_dssp GGGTEEEECCSCHHHHHHHHHHHTTEEETTEEEEEEECCCC
T ss_pred CCCcEEEEEECCHHHHHHHHHHhCCCeECCcEEEEEEcCCC
Confidence 68999999999999999999999999999999999998653
No 116
>1x4e_A RNA binding motif, single-stranded interacting protein 2; structural genomics, RRM domain, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.61 E-value=1.2e-08 Score=76.49 Aligned_cols=42 Identities=31% Similarity=0.456 Sum_probs=39.6
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
.+|++||||||+|.+.++|++|++.|||..|+|+.|+|.++.
T Consensus 42 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~~~~~~~~ 83 (85)
T 1x4e_A 42 TTNKCKGYGFVDFDSPSAAQKAVTALKASGVQAQMAKQSGPS 83 (85)
T ss_dssp SSCSCCSEEEEEESCHHHHHHHHHHHHHHTCCEESCCSSCCC
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHhcCCeEeeEEEeecCCC
Confidence 479999999999999999999999999999999999998865
No 117
>2jwn_A Embryonic polyadenylate-binding protein 2-B; epabp2, poly(A) binding, structural genomics, protein structure initiative, PSI-2; NMR {Xenopus laevis}
Probab=98.60 E-value=3.4e-08 Score=79.24 Aligned_cols=43 Identities=19% Similarity=0.411 Sum_probs=40.3
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.+|++||||||+|.+.++|++|| +|||..|+|+.|+|.+++..
T Consensus 73 ~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~~a~~~ 115 (124)
T 2jwn_A 73 FSGHPKGYAYIEFAERNSVDAAV-AMDETVFRGRTIKVLPKRTN 115 (124)
T ss_dssp TTSSCEEEEEEEESSHHHHHHHH-TTTTCEETTEECEEEESSCC
T ss_pred CCCCcccEEEEEECCHHHHHHHH-hcCCCeECCeEEEEEECCCC
Confidence 47999999999999999999999 89999999999999998753
No 118
>2cqh_A IGF-II mRNA-binding protein 2 isoform A; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=1.7e-08 Score=77.00 Aligned_cols=43 Identities=21% Similarity=0.316 Sum_probs=39.6
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCC-ceecccceeeecccchHH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNG-RIIGSKPLYVALAQRKED 48 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG-~~l~GR~L~V~~A~~k~~ 48 (303)
++||||||+|.+.++|++|++.||| ..|+|+.|+|.++.++..
T Consensus 42 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~~g~~l~v~~a~~~~~ 85 (93)
T 2cqh_A 42 LKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKL 85 (93)
T ss_dssp EETTEEEECCSCHHHHHHHHHHHTTTCEETTEECEEEECCCCCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHccCCeeECCEEEEEEEccCccc
Confidence 3689999999999999999999999 999999999999987643
No 119
>2dit_A HIV TAT specific factor 1 variant; structural genomics, RRM_1 domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.60 E-value=3e-08 Score=78.86 Aligned_cols=42 Identities=24% Similarity=0.447 Sum_probs=39.5
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+||||||+|.+.++|.+|++.|||..|+||+|.|.++.++.
T Consensus 62 ~~~G~afV~f~~~~~A~~Ai~~lng~~~~gr~l~v~~a~~~~ 103 (112)
T 2dit_A 62 HPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTT 103 (112)
T ss_dssp CTTCEEEEECSCHHHHHHHHHHSTTCEETTEECEEEECCSCC
T ss_pred CCCEEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEEeCCCC
Confidence 489999999999999999999999999999999999998753
No 120
>2hvz_A Splicing factor, arginine/serine-rich 7; RRM, RNA binding protein; NMR {Homo sapiens}
Probab=98.60 E-value=3.5e-08 Score=76.39 Aligned_cols=41 Identities=32% Similarity=0.585 Sum_probs=39.2
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
+||||||+|.+.++|++|++.|||..++|+.|+|.++.++.
T Consensus 36 ~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 76 (101)
T 2hvz_A 36 PPGFAFVEFEDPRDAEDAVRGLDGKVICGSRVRVELSTGMP 76 (101)
T ss_dssp SSSEEEEECSSHHHHHHHHHHHHHSCSSSCCCEEEESSSCC
T ss_pred CCCEEEEEECCHHHHHHHHHHHCCCeECCcEEEEEEccCCC
Confidence 79999999999999999999999999999999999998764
No 121
>2dh8_A DAZ-associated protein 1; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.59 E-value=1.7e-08 Score=78.68 Aligned_cols=45 Identities=18% Similarity=0.351 Sum_probs=41.8
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|++||||||+|.+.++|++||+. |+..|+|+.|+|.++.++.+
T Consensus 53 ~~g~~~g~afV~f~~~~~a~~a~~~-~~~~~~g~~l~V~~a~~~~~ 97 (105)
T 2dh8_A 53 TTNQSRGFGFVKFKDPNCVGTVLAS-RPHTLDGRNIDPKPCTPRGM 97 (105)
T ss_dssp SSCCEEEEEEEEESSTTHHHHHHHH-CSEEETTEEEBCCCSCCSSC
T ss_pred CCCCcceEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEccCCCC
Confidence 4789999999999999999999999 99999999999999987653
No 122
>1x4b_A Heterogeneous nuclear ribonucleoproteins A2/B1; structure genomics, RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=2.7e-08 Score=79.03 Aligned_cols=45 Identities=33% Similarity=0.467 Sum_probs=41.7
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|++||||||+|.+.++|++||+. |+..|+|+.|+|.++.++.+
T Consensus 64 ~~g~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~V~~a~~~~~ 108 (116)
T 1x4b_A 64 ASKRSRGFGFVTFSSMAEVDAAMAA-RPHSIDGRVVEPKRAVAREE 108 (116)
T ss_dssp TTSSCCSEEEEECSSHHHHHHHHTS-CSEEETTEEEEEECCSSCCC
T ss_pred CCCCcCceEEEEeCCHHHHHHHHHh-CCcEECCEEEEEEECCCCcc
Confidence 4799999999999999999999998 99999999999999987753
No 123
>2cqd_A RNA-binding region containing protein 1; RNA recognition motif, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.57 E-value=3.9e-08 Score=78.08 Aligned_cols=43 Identities=33% Similarity=0.535 Sum_probs=40.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.+|++||||||+|.+.++|++||+.+|+ .|+|+.|+|.++..+
T Consensus 54 ~~~~~~g~afV~f~~~~~a~~Ai~~~~~-~~~g~~l~V~~a~~~ 96 (116)
T 2cqd_A 54 QTGKSRGYGFVTMADRAAAERACKDPNP-IIDGRKANVNLAYLG 96 (116)
T ss_dssp SSCCCCSEEEEEESSHHHHHHHHTCSSC-EETTEECEEEESTTT
T ss_pred CCCccceEEEEEECCHHHHHHHHHhCCC-cCCCEEEEEEEcccC
Confidence 4799999999999999999999999998 899999999999654
No 124
>1uaw_A Mouse-musashi-1; RNP-type structure, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.55 E-value=2.7e-08 Score=72.92 Aligned_cols=40 Identities=30% Similarity=0.464 Sum_probs=38.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A 43 (303)
.+|++||||||+|.+.++|++|++.++ ..++|+.|.|.+|
T Consensus 37 ~~~~~~g~afV~f~~~~~a~~a~~~~~-~~~~g~~l~v~~a 76 (77)
T 1uaw_A 37 LTKRSRGFGFVTFMDQAGVDKVLAQSR-HELDSKTIDPKVA 76 (77)
T ss_dssp CSSSCSSEEEECCCCTTHHHHHHHTTT-CCCSSCCCEEEEC
T ss_pred CCCCcCceEEEEEcCHHHHHHHHHhCC-CccCCEEEEEEec
Confidence 478999999999999999999999999 9999999999987
No 125
>2lea_A Serine/arginine-rich splicing factor 2; SR protein, RNA binding protein; NMR {Homo sapiens} PDB: 2leb_A 2lec_A
Probab=98.55 E-value=2.8e-08 Score=82.01 Aligned_cols=45 Identities=29% Similarity=0.527 Sum_probs=42.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++||+.|||..|+|++|+|.+++++.
T Consensus 84 ~~g~~~G~afV~F~~~~~A~~Ai~~l~g~~i~g~~l~V~~a~~~~ 128 (135)
T 2lea_A 84 YTKESRGFAFVRFHDKRDAEDAMDAMDGAVLDGRELRVQMARYGR 128 (135)
T ss_dssp SSSSCCSCCEEECSCHHHHHHHHTTTTTCCSSSSCCEEEECCCCC
T ss_pred CCCccceEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEECCCCC
Confidence 378999999999999999999999999999999999999998653
No 126
>2rs2_A Musashi-1, RNA-binding protein musashi homolog 1; protein-RNA complex, RRM, RBD, RNA binding protein- complex; NMR {Mus musculus}
Probab=98.54 E-value=3.1e-08 Score=78.53 Aligned_cols=45 Identities=27% Similarity=0.398 Sum_probs=40.7
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|++||||||+|.+.++|++||+.+ +..|+|+.|+|.++..+..
T Consensus 62 ~tg~~kg~afV~f~~~~~A~~Ai~~~-~~~l~g~~l~V~~a~~~~~ 106 (109)
T 2rs2_A 62 LTKRSRGFGFVTFMDQAGVDKVLAQS-RHELDSKTIDPKVAFPRRA 106 (109)
T ss_dssp TTCCCTTCEEEEESSHHHHHHHHHSS-CEEETTEEEEEEECCCCCC
T ss_pred CCCCcCcEEEEEECCHHHHHHHHHHC-CCcCCCEEEEEEEccCCCC
Confidence 36999999999999999999999986 5999999999999987653
No 127
>2qfj_A FBP-interacting repressor; protein-DNA complex; HET: DNA; 2.10A {Homo sapiens} PDB: 3uwt_A 2kxf_A 2kxh_A
Probab=98.54 E-value=8.9e-08 Score=82.52 Aligned_cols=73 Identities=21% Similarity=0.335 Sum_probs=54.0
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCCC
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRMQQMGQLFQPGSTGGYFV 83 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~~~~~~~q~~~~~r~~~~~~~~~~~~~~~~f~ 83 (303)
+|+++|||||+|.+.++|++|++.|||..|+|+.|+|.++..+............ .. . ....+||
T Consensus 66 ~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~g~~l~v~~~~~~~~~~~~~~~~~~------~~-------~--~~~~l~v 130 (216)
T 2qfj_A 66 TMKHKGFAFVEYEVPEAAQLALEQMNSVMLGGRNIKVGRPSNIGQAQPIIDQLAE------EA-------R--AFNRIYV 130 (216)
T ss_dssp C-CCCSEEEEEESSHHHHHHHHHHHSSCCCC-CCCEEECCSCCGGGHHHHHHHHH------HH-------T--TSCEEEE
T ss_pred CCccCceEEEEeCCHHHHHHHHHHccCCeeCCeeEEEecCCCccccchhhhhhhc------cc-------C--CCcEEEE
Confidence 7899999999999999999999999999999999999999877654332211100 00 0 1237899
Q ss_pred CCCCCCCc
Q psy14476 84 PTLPQPQR 91 (303)
Q Consensus 84 ~~lp~~~~ 91 (303)
.||+....
T Consensus 131 ~nlp~~~t 138 (216)
T 2qfj_A 131 ASVHQDLS 138 (216)
T ss_dssp ECCCTTCC
T ss_pred eCCCCcCC
Confidence 99998654
No 128
>3r27_A HnRNP L, heterogeneous nuclear ribonucleoprotein L; RBD fold, protein binding, nucleus; 2.04A {Homo sapiens}
Probab=98.54 E-value=3.5e-08 Score=78.41 Aligned_cols=42 Identities=21% Similarity=0.252 Sum_probs=38.2
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCce--ecccceeeecccchH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRI--IGSKPLYVALAQRKE 47 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~--l~GR~L~V~~A~~k~ 47 (303)
++||||||+|++.++|.+||+.|++.. |.||+|+|.|++.++
T Consensus 55 ~~kg~AFVef~~~~~A~~Av~~ln~~~~~i~Gr~i~V~~S~~k~ 98 (100)
T 3r27_A 55 PKKRQALVEFEDVLGACNAVNYAADNQIYIAGHPAFVNYSTSQK 98 (100)
T ss_dssp TTTTEEEEEESSHHHHHHHHHHHHHSCEEETTEEEEEEECSCSC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhcCCCceeCCcEEEEEeccccc
Confidence 468999999999999999999999875 789999999998763
No 129
>2hgn_A Heterogeneous nuclear ribonucleoprotein F; RNA recognition motif, G-tract, G-quadruplex, alternative splicing, RNA binding protein; NMR {Homo sapiens} PDB: 2kg1_A
Probab=98.54 E-value=1.6e-08 Score=84.68 Aligned_cols=47 Identities=23% Similarity=0.272 Sum_probs=42.9
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 1 ~d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
+|.+|++||||||+|++.++|++|| ++|+..|+||.|.|.++..++.
T Consensus 79 ~d~~g~srGfaFV~F~~~e~A~~Al-~~~g~~l~gR~i~V~~a~~~~~ 125 (139)
T 2hgn_A 79 IGPDGRVTGEADVEFATHEEAVAAM-SKDRANMQHRYIELFLNSTTGA 125 (139)
T ss_dssp CSSSSCSSCCCEEECSHHHHHHHHT-TCCSCSSSSCCCCCEECCCSCC
T ss_pred ECCCCCCceEEEEEeCCHHHHHHHH-hhCCCEECCEEEEEEECCCCCC
Confidence 3667999999999999999999999 7899999999999999987654
No 130
>2bz2_A Negative elongation factor E; NELF E, RNA recognition motif, alternative splicing, nuclear protein, phosphorylation, repeat, repressor; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2jx2_A
Probab=98.54 E-value=4.8e-08 Score=79.29 Aligned_cols=44 Identities=30% Similarity=0.431 Sum_probs=40.4
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r 49 (303)
++||||||+|.+.++|++||+.|||..|+|+.|+|.++.++...
T Consensus 71 ~~kg~aFV~f~~~~~A~~Ai~~lng~~~~g~~l~V~~a~~~~~~ 114 (121)
T 2bz2_A 71 PPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQPML 114 (121)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHTTCBCSSCBCEEEECCSSCC-
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEECCeEEEEEEeCCCCCC
Confidence 67999999999999999999999999999999999999876543
No 131
>2cpj_A Non-POU domain-containing octamer-binding protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.52 E-value=5.8e-08 Score=74.95 Aligned_cols=41 Identities=29% Similarity=0.431 Sum_probs=38.7
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
++||||||+|.+.++|++|++.|||..|+|++|+|.++.++
T Consensus 49 ~~kg~afV~f~~~~~a~~a~~~l~g~~~~g~~l~v~~a~~~ 89 (99)
T 2cpj_A 49 KDKGFGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 89 (99)
T ss_dssp TTTTEEEEECSSSHHHHHHHHHHTTCCBTTBCCEEEESSCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHhCCCEeCCceEEEEEcCCC
Confidence 45899999999999999999999999999999999999865
No 132
>2cpd_A Apobec-1 stimulating protein; RNA recognition motif, RRM, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.51 E-value=8.6e-08 Score=73.99 Aligned_cols=42 Identities=31% Similarity=0.665 Sum_probs=39.1
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+||||||+|.+.++|++||+.|||..|+|+.|+|.+++++.
T Consensus 49 ~~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 90 (99)
T 2cpd_A 49 KIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVD 90 (99)
T ss_dssp ECSSEEEEEESSHHHHHHHHHHHSSEEETTEEEEEECCCCCC
T ss_pred EeCCeEEEEeCCHHHHHHHHHHhCCCEeCCcEEEEEECCCCC
Confidence 368999999999999999999999999999999999998754
No 133
>3s7r_A Heterogeneous nuclear ribonucleoprotein A/B; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 2.15A {Homo sapiens} PDB: 1hd0_A 1hd1_A
Probab=98.51 E-value=7.2e-08 Score=72.47 Aligned_cols=40 Identities=25% Similarity=0.489 Sum_probs=36.8
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A 43 (303)
.+|++||||||+|.+.++|++|++ +++..|+|+.|.|.+|
T Consensus 48 ~~g~~~g~afV~f~~~~~a~~A~~-~~~~~~~g~~i~v~~A 87 (87)
T 3s7r_A 48 NTGRSRGFGFILFKDAASVEKVLD-QKEHRLDGRVIDPKKA 87 (87)
T ss_dssp TTCCEEEEEEEEESSTHHHHHHHH-SSCEEETTEEEEEEEC
T ss_pred CCCccccEEEEEECCHHHHHHHHH-hCCCEECCEEEEEEeC
Confidence 479999999999999999999996 4889999999999876
No 134
>2xnq_A Nuclear polyadenylated RNA-binding protein 3; transcription termination, RNA processi recognition, RRM; HET: CAF; 1.30A {Saccharomyces cerevisiae} PDB: 2xnr_A 2l41_A
Probab=98.50 E-value=1e-07 Score=73.95 Aligned_cols=40 Identities=20% Similarity=0.430 Sum_probs=38.0
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
+||||||+|.+.++|++|++.|||..++|+.|+|.+++.+
T Consensus 56 ~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 95 (97)
T 2xnq_A 56 KNAFGFIQFDNPQSVRDAIEXESQEMNFGKKLILEVSSSN 95 (97)
T ss_dssp CSSEEEEEESSHHHHHHHHHHHTTSEETTEECEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCEEEEEEecCCC
Confidence 4899999999999999999999999999999999999865
No 135
>1whx_A Hypothetical protein riken cDNA 1200009A02; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.49 E-value=8.4e-08 Score=76.32 Aligned_cols=41 Identities=27% Similarity=0.242 Sum_probs=38.4
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
++||||||+|.+.++|++||+.|||..|+|++|+|.||...
T Consensus 44 ~~~g~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~ 84 (111)
T 1whx_A 44 EGGITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIG 84 (111)
T ss_dssp SSSSCEEEEESCHHHHHHHHHHHTTCBSSSSBCEEEEEETT
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEECCeEEEEEECCCC
Confidence 47899999999999999999999999999999999999753
No 136
>2jvo_A Nucleolar protein 3; nucleus, phosphorylation, ribonucleoprotein, ribosome biogenesis, RNA-binding, rRNA processing; NMR {Saccharomyces cerevisiae} PDB: 2osq_A
Probab=98.49 E-value=9e-08 Score=75.88 Aligned_cols=42 Identities=36% Similarity=0.640 Sum_probs=38.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHH
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r 49 (303)
||||||+|.+.++|++|++.|||..|+|+.|+|.++..+..+
T Consensus 65 kg~afV~f~~~~~A~~Ai~~l~g~~~~g~~l~V~~a~~~~~r 106 (108)
T 2jvo_A 65 NGFAFVEFEEAESAAKAIEEVHGKSFANQPLEVVYSKLPAKR 106 (108)
T ss_dssp TTEEEEECSSHHHHHHHHHHHTTCEETTEECEEESCSCCC--
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEEecCCCCC
Confidence 799999999999999999999999999999999999876544
No 137
>1sjq_A Polypyrimidine tract-binding protein 1; babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.49 E-value=8.4e-08 Score=76.84 Aligned_cols=41 Identities=22% Similarity=0.464 Sum_probs=37.2
Q ss_pred cccEEEEEeCCHHHHHHHHHHhC--CceecccceeeecccchH
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMN--GRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~ln--G~~l~GR~L~V~~A~~k~ 47 (303)
.||||||+|++.++|++||+.|+ +..|+||+|+|+||..+.
T Consensus 51 ~kGfaFVeF~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~A~~~~ 93 (105)
T 1sjq_A 51 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 93 (105)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHTTSCCEETTEECCBCCCSSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEcCCCC
Confidence 48999999999999999999886 478999999999998764
No 138
>2kvi_A Nuclear polyadenylated RNA-binding protein 3; RNA-binding motif, RRM, transcription termination, NUC phosphoprotein; NMR {Saccharomyces cerevisiae}
Probab=98.49 E-value=6.5e-08 Score=74.51 Aligned_cols=42 Identities=19% Similarity=0.380 Sum_probs=39.0
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
+||||||+|.+.++|++|++.|||..+.|++|+|.++..+..
T Consensus 44 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~~~ 85 (96)
T 2kvi_A 44 KNAFGFIQFDNPQSVRDAIECESQEMNFGKKLILEVSSSNAR 85 (96)
T ss_dssp ETTEEEEEESCHHHHHHHHHHHTCSSCBTTTBCEEEEECCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCeeCCcEEEEEEcCcCCC
Confidence 589999999999999999999999999999999999986544
No 139
>2diu_A KIAA0430 protein; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.48 E-value=6.4e-08 Score=76.46 Aligned_cols=39 Identities=13% Similarity=0.214 Sum_probs=37.5
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 9 GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 9 GfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
|||||.|.+.++|++|++.|||..|.||+|+|+||+.+.
T Consensus 47 G~AfV~F~~~esA~~A~~~l~G~~l~gr~i~v~~A~~~s 85 (96)
T 2diu_A 47 CSAILRFINQDSAERAQKRMENEDVFGNRIIVSFTPKNR 85 (96)
T ss_dssp TCEEEEESSHHHHHHHHHHHTTCCSSSSCCEEESSCCSC
T ss_pred CEEEEEECCHHHHHHHHHHhcCCccCCceEEEEecCCCc
Confidence 999999999999999999999999999999999998764
No 140
>2cqg_A TDP-43, TAR DNA-binding protein-43; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.48 E-value=9.3e-08 Score=74.20 Aligned_cols=43 Identities=33% Similarity=0.524 Sum_probs=39.4
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++||+ +++.|+|+.|.|.++..++
T Consensus 52 ~~g~~~g~afV~f~~~~~a~~A~~--~~~~~~g~~l~v~~a~~~~ 94 (103)
T 2cqg_A 52 KTGHSKGFGFVRFTEYETQVKVMS--QRHMIDGRWCDCKLPNSKQ 94 (103)
T ss_dssp SSCSEEEEEEEEESSHHHHHHHHH--SCEEETTEEEEEECCCTTC
T ss_pred CCCCccceEEEEECCHHHHHHHHH--cCCeeCCeEEEEEecCCCC
Confidence 479999999999999999999998 5789999999999998764
No 141
>1iqt_A AUF1, heterogeneous nuclear ribonucleoprotein D0; RNA-binding protein, hnRNP, telomere, DNA-binding protein, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wtb_A 1x0f_A
Probab=98.48 E-value=5.9e-08 Score=70.82 Aligned_cols=40 Identities=20% Similarity=0.398 Sum_probs=37.1
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecc
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A 43 (303)
.+|++||||||+|.+.++|++|++. ++..++|+.|.|.+|
T Consensus 36 ~~~~~~g~afV~f~~~~~a~~Ai~~-~~~~~~g~~l~v~~a 75 (75)
T 1iqt_A 36 KTNKRRGFCFITFKEEEPVKKIMEK-KYHNVGLSKCEIKVA 75 (75)
T ss_dssp CCSSSCCCEEEECSSSHHHHHHHTT-SSCCBTTBCCCEEEC
T ss_pred CCCCcCCEEEEEECCHHHHHHHHHh-CCCeECCEEEEEEEC
Confidence 4689999999999999999999985 999999999999875
No 142
>2dnq_A RNA-binding protein 4B; RRM domain,RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.47 E-value=1.2e-07 Score=71.88 Aligned_cols=40 Identities=20% Similarity=0.353 Sum_probs=38.0
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
||||||+|.+.++|++|++.||+..|+|+.|+|.++.++.
T Consensus 42 ~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~v~~a~~~~ 81 (90)
T 2dnq_A 42 KNYGFVHIEDKTAAEDAIRNLHHYKLHGVNINVEASKNKS 81 (90)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEECSSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhcCCccCCcEEEEEECCCCC
Confidence 7999999999999999999999999999999999998764
No 143
>1x4f_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.46 E-value=5.5e-08 Score=78.72 Aligned_cols=42 Identities=19% Similarity=0.233 Sum_probs=37.5
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhC--CceecccceeeecccchH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMN--GRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~ln--G~~l~GR~L~V~~A~~k~ 47 (303)
++||||||+|++.++|++||+.|| +..|+||+|+|.+|+++.
T Consensus 60 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~~~ 103 (112)
T 1x4f_A 60 RMKSQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYK 103 (112)
T ss_dssp TTTTEEEEECSSHHHHHHHHHHHHHSCCCSSSSCCEEEEECSCS
T ss_pred cCCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEECcccc
Confidence 579999999999999999999886 456999999999998654
No 144
>2ytc_A PRE-mRNA-splicing factor RBM22; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.46 E-value=1.3e-07 Score=70.69 Aligned_cols=38 Identities=21% Similarity=0.335 Sum_probs=36.2
Q ss_pred cccEEEEEeCCHHHHHHHHHHh-CCceecccceeeeccc
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEM-NGRIIGSKPLYVALAQ 44 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~l-nG~~l~GR~L~V~~A~ 44 (303)
+||||||+|.+.++|++|++.| ||..++|++|+|.||+
T Consensus 47 ~kg~afV~f~~~~~A~~a~~~l~~~~~~~g~~l~v~~ak 85 (85)
T 2ytc_A 47 RQQCAFIQFATRQAAEVAAEKSFNKLIVNGRRLNVKWGR 85 (85)
T ss_dssp GGTEEEEEESSHHHHHHHHHTTTTTCEETTEECCEEECC
T ss_pred CCCEEEEEECCHHHHHHHHHHhcCCeeECCCEEEEEecC
Confidence 5899999999999999999999 9999999999999984
No 145
>2cq2_A Hypothetical protein LOC91801; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.45 E-value=1.2e-07 Score=77.00 Aligned_cols=40 Identities=23% Similarity=0.527 Sum_probs=37.0
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCcee-----cccceeeecccch
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRII-----GSKPLYVALAQRK 46 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l-----~GR~L~V~~A~~k 46 (303)
+||||||+|.+.++|++|+++|||++| .|++|+|+|+...
T Consensus 62 ~rgfaFV~f~~~~~A~~Ai~~lnG~~~~~~lg~g~~l~v~~a~~~ 106 (114)
T 2cq2_A 62 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEKV 106 (114)
T ss_dssp TCSCEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEEESCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEEccccCCCcEEEEEecccC
Confidence 489999999999999999999999998 7999999999754
No 146
>1x4g_A Nucleolysin TIAR; structural genomics, RRM domain, TIA-1 related protein, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.44 E-value=1.8e-07 Score=73.58 Aligned_cols=40 Identities=30% Similarity=0.489 Sum_probs=38.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
||||||+|.+.++|++||+.|||..|+|+.|+|.|+.++.
T Consensus 61 ~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 100 (109)
T 1x4g_A 61 KGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESP 100 (109)
T ss_dssp TTEEEEEESSHHHHHHHHHHHTTCEETTEECEEECCCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHcCCCEECCcEEEEEecCCCC
Confidence 8999999999999999999999999999999999998764
No 147
>3s6e_A RNA-binding protein 39; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-biology; HET: MSE CIT; 0.95A {Mus musculus} PDB: 2lq5_A
Probab=98.43 E-value=1.5e-07 Score=76.23 Aligned_cols=39 Identities=26% Similarity=0.281 Sum_probs=37.3
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
+|||+||+|.+.++|.+|++.|||+.++||.|+|.++..
T Consensus 54 ~~G~~fV~f~~~e~A~~Ai~~lnG~~f~GR~i~v~~~~~ 92 (114)
T 3s6e_A 54 AQGNVYVKCPSIAAAIAAVNALHGRWFAGKMITAAYVPL 92 (114)
T ss_dssp TTCCEEEECSSHHHHHHHHHHHTTCEETTEECEEEEECH
T ss_pred CcEEEEEEECCHHHHHHHHHHhCCCEECCEEEEEEEEcH
Confidence 699999999999999999999999999999999999864
No 148
>1x4d_A Matrin 3; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.43 E-value=8.6e-08 Score=76.12 Aligned_cols=41 Identities=24% Similarity=0.327 Sum_probs=36.7
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCc--eecccceeeecccch
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGR--IIGSKPLYVALAQRK 46 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~--~l~GR~L~V~~A~~k 46 (303)
+.||||||+|++.++|++||+.||+. .|+||+|+|.+|+.+
T Consensus 50 ~~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~ 92 (102)
T 1x4d_A 50 NKINEAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKY 92 (102)
T ss_dssp SSSSCEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEEECCC
T ss_pred cCCCEEEEEECCHHHHHHHHHHHcCCCceECCcEEEEEECCCC
Confidence 35799999999999999999999864 599999999999864
No 149
>2xs2_A Deleted in azoospermia-like; RNA binding protein-RNA complex; 1.35A {Mus musculus} PDB: 2xs7_A 2xs5_A 2xsf_A
Probab=98.43 E-value=4.1e-08 Score=76.09 Aligned_cols=45 Identities=33% Similarity=0.468 Sum_probs=41.0
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
|.+|++||||||+|.+.++|++|++ ++..++|+.|.|.++.++..
T Consensus 44 ~~~g~~~g~afV~f~~~~~a~~Ai~--~~~~~~g~~l~v~~a~~~~~ 88 (102)
T 2xs2_A 44 DRTGVSKGYGFVSFYNDVDVQKIVE--SQINFHGKKLKLGPAIRKQN 88 (102)
T ss_dssp CTTSCEEEEEEEEESSCCCHHHHTT--CCCEETTEECEEEEEEECC-
T ss_pred CCCCCccceEEEEECCHHHHHHHHh--CCCeECCEEEEEEECCcCcc
Confidence 5589999999999999999999998 99999999999999987754
No 150
>1why_A Hypothetical protein riken cDNA 1810017N16; RNA recognition motif, RRM, RNA binding domain, RBD, RNP, structural genomics; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.43 E-value=1.6e-07 Score=72.19 Aligned_cols=40 Identities=25% Similarity=0.458 Sum_probs=38.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceec--ccceeeecccchH
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIG--SKPLYVALAQRKE 47 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~--GR~L~V~~A~~k~ 47 (303)
||||||+|.+.++|++|++.|||..|+ |+.|+|.+++++.
T Consensus 53 ~g~afV~f~~~~~A~~A~~~l~g~~~~~~g~~l~V~~a~~~~ 94 (97)
T 1why_A 53 DSFAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSGP 94 (97)
T ss_dssp SCCEEEEESSHHHHHHHHHHHTTCBCSSSSCBCEEEECCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHHCCCEeCCCCcEEEEEECCCCC
Confidence 899999999999999999999999999 9999999998764
No 151
>3md3_A Nuclear and cytoplasmic polyadenylated RNA-bindin PUB1; RRM, RNP, RBD, poly(U) binding, tandem, acetylation, cytopla nucleus; 2.70A {Saccharomyces cerevisiae}
Probab=98.42 E-value=2.6e-07 Score=75.83 Aligned_cols=46 Identities=17% Similarity=0.400 Sum_probs=41.8
Q ss_pred CCCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 1 ~d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
+|.+|+++|||||+|.+.++|.+|++.|||..+.|+.|+|.++..+
T Consensus 34 ~~~~~~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~~~~~ 79 (166)
T 3md3_A 34 IDKNNKNVNYAFVEYHQSHDANIALQTLNGKQIENNIVKINWAFQS 79 (166)
T ss_dssp CCCC-CCEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred ECCCCCCCCEEEEEeCCHHHHHHHHHHcCCCccCCCeeEEEEcCCC
Confidence 3667899999999999999999999999999999999999998764
No 152
>2cq1_A PTB-like protein L; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.41 E-value=2.2e-07 Score=73.35 Aligned_cols=41 Identities=22% Similarity=0.373 Sum_probs=36.9
Q ss_pred cccEEEEEeCCHHHHHHHHHHh--CCceecccceeeecccchH
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEM--NGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~l--nG~~l~GR~L~V~~A~~k~ 47 (303)
.||||||+|++.++|++||+.| ++..|.||+|+|.|+..+.
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~~~Gr~l~V~~a~~~~ 92 (101)
T 2cq1_A 50 GKNQAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 92 (101)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCEETTEECEEEECSCSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCcEEEEEEcCccc
Confidence 3899999999999999999977 5778999999999998654
No 153
>2dgt_A RNA-binding protein 30; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.40 E-value=2.5e-07 Score=70.42 Aligned_cols=40 Identities=23% Similarity=0.402 Sum_probs=37.7
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
++||||+|.+.++|++|++.|||..|+|+.|+|.++.++.
T Consensus 44 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~V~~a~~~~ 83 (92)
T 2dgt_A 44 KDYAFVHMERAEDAVEAIRGLDNTEFQGKRMHVQLSTSRL 83 (92)
T ss_dssp SSEEEEEESCHHHHHHHHHHHTTEEETTEEEEEEESSCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeeCCcEEEEEEccCCC
Confidence 6799999999999999999999999999999999998753
No 154
>2dgu_A Heterogeneous nuclear ribonucleoprotein Q; RRM domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2dk2_A
Probab=98.40 E-value=1.6e-07 Score=73.08 Aligned_cols=42 Identities=26% Similarity=0.517 Sum_probs=38.8
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.||||||+|.+.++|++||+.||+..|+|+.|+|.++.++..
T Consensus 44 ~~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 85 (103)
T 2dgu_A 44 LKDYAFIHFDERDGAVKAMEEMNGKDLEGENIEIVFAKPPDQ 85 (103)
T ss_dssp CSSCEEEEESSHHHHHHHHHHHTTEEETTEEEEEEECCCCCC
T ss_pred ECCEEEEEeCCHHHHHHHHHHHCCCccCCCEEEEEEcCCCcc
Confidence 478999999999999999999999999999999999987643
No 155
>1wf1_A RNA-binding protein RALY; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 1wf2_A
Probab=98.40 E-value=1.4e-07 Score=74.35 Aligned_cols=40 Identities=33% Similarity=0.556 Sum_probs=37.8
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
+||||||+|.+.++|++|++.|||..|+|+.|+|.++..+
T Consensus 61 ~~g~afV~f~~~~~A~~A~~~l~g~~~~g~~l~V~~a~~~ 100 (110)
T 1wf1_A 61 HKGYAFVQYSNERHARAAVLGENGRVLAGQTLDINMAGEP 100 (110)
T ss_dssp ETTEEEEECSSSHHHHHHHHHHTTCEETTEECCEEESCCC
T ss_pred eCCEEEEEECCHHHHHHHHHHcCCCEECCeEEEEEECCCC
Confidence 5899999999999999999999999999999999999743
No 156
>3pgw_A U1-A; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 1fht_A 2u1a_A 2aym_A 2b0g_A
Probab=98.40 E-value=1.4e-07 Score=85.31 Aligned_cols=46 Identities=28% Similarity=0.416 Sum_probs=42.9
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
.+|++||||||+|.+.++|++||+.|||..|.|+.|+|.|+..+.+
T Consensus 47 ~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~ 92 (282)
T 3pgw_A 47 RSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSD 92 (282)
T ss_pred CCCCcceEEEEEECCHHHHHHHHHHhcCCeeCCcEEEEEEeccCcc
Confidence 3789999999999999999999999999999999999999987654
No 157
>1fxl_A Paraneoplastic encephalomyelitis antigen HUD; protein-RNA complex, AU-rich element, transcription/RNA complex; 1.80A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1g2e_A 1fnx_H 1d8z_A 1d9a_A 3hi9_A
Probab=98.39 E-value=2.5e-07 Score=76.01 Aligned_cols=43 Identities=35% Similarity=0.662 Sum_probs=41.2
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
+|++||||||+|.+.++|++|++.|||..+.|++|.|.++.++
T Consensus 40 ~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 82 (167)
T 1fxl_A 40 TGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYARPS 82 (167)
T ss_dssp TCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCcceeEEEEEECCHHHHHHHHHHcCCCccCCceEEEEecCCC
Confidence 8999999999999999999999999999999999999999865
No 158
>1wex_A Hypothetical protein (riken cDNA 2810036L13); structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.38 E-value=1.5e-07 Score=74.74 Aligned_cols=41 Identities=20% Similarity=0.206 Sum_probs=36.7
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCc--eecccceeeecccchH
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGR--IIGSKPLYVALAQRKE 47 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~--~l~GR~L~V~~A~~k~ 47 (303)
+||||||+|++.++|++|++.|++. .|+||+|+|.|+..+.
T Consensus 50 ~kg~aFVef~~~~~A~~Ai~~l~~~~~~i~Gr~l~V~~a~~~~ 92 (104)
T 1wex_A 50 FKRQALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKR 92 (104)
T ss_dssp TTTEEEEEESSHHHHHHHHHHHHHSCCBSSSSBCEEEECSSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCEEEEEEEccCcc
Confidence 4899999999999999999998764 5999999999998654
No 159
>2dnp_A RNA-binding protein 14; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=98.37 E-value=3e-07 Score=69.69 Aligned_cols=40 Identities=25% Similarity=0.527 Sum_probs=37.5
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
+|||||+|.+.++|++||+.|||..|+|+.|+|.++.++.
T Consensus 43 ~~~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~ 82 (90)
T 2dnp_A 43 KDYAFVHMEKEADAKAAIAQLNGKEVKGKRINVELSTKGQ 82 (90)
T ss_dssp SSCEEEEESCHHHHHHHHHHHTTCEETTEECEEEESCCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEECCCCC
Confidence 6799999999999999999999999999999999998653
No 160
>1b7f_A Protein (SXL-lethal protein), RNA (5'-R(P*GP*UP*UP*GP*UP*UP*UP*UP*UP*UP*UP*U)-3; splicing regulation, RNP domain, RNA complex; 2.60A {Drosophila melanogaster} SCOP: d.58.7.1 d.58.7.1 PDB: 3sxl_A* 1sxl_A 2sxl_A
Probab=98.35 E-value=3.3e-07 Score=75.71 Aligned_cols=44 Identities=32% Similarity=0.514 Sum_probs=41.5
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.+|+++|||||+|.+.++|++|++.|||..+.|++|.|.++.++
T Consensus 40 ~~~~~~g~afV~f~~~~~A~~a~~~l~~~~~~g~~l~v~~~~~~ 83 (168)
T 1b7f_A 40 KTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYARPG 83 (168)
T ss_dssp TTTEECSEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCC
T ss_pred CCCccceEEEEEECCHHHHHHHHHhcCCCEeCCcEEEEEecCCC
Confidence 47899999999999999999999999999999999999999765
No 161
>1sjr_A Polypyrimidine tract-binding protein 1; extended babbab motif, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1 PDB: 2adb_A
Probab=98.34 E-value=2.7e-07 Score=79.59 Aligned_cols=41 Identities=15% Similarity=0.229 Sum_probs=38.0
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecc--cceeeecccch
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGS--KPLYVALAQRK 46 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~G--R~L~V~~A~~k 46 (303)
+++|||||+|++.++|++|++.|||..|.| ++|+|.|++.+
T Consensus 82 ~~rgfAFVeF~d~~~A~~Ai~~LnG~~i~g~g~~L~V~~Ak~~ 124 (164)
T 1sjr_A 82 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 124 (164)
T ss_dssp SSCEEEEEEESCHHHHHHHHHHSTTBCSSSSCSCEEEEECSSS
T ss_pred CCCCEEEEEECCHHHHHHHHHHhCCCEecCCCcEEEEEEecCC
Confidence 468999999999999999999999999966 99999999875
No 162
>2hzc_A Splicing factor U2AF 65 kDa subunit; RNA splicing, RRM, RNA recognition, alternative conformation binding protein; HET: P6G; 1.47A {Homo sapiens} PDB: 1u2f_A
Probab=98.33 E-value=3.8e-07 Score=68.18 Aligned_cols=36 Identities=31% Similarity=0.533 Sum_probs=33.9
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeec
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVAL 42 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~ 42 (303)
++||||||+|.+.++|++|+ .|||..|+||.|+|.+
T Consensus 51 ~~kg~afV~f~~~~~a~~A~-~l~g~~~~g~~l~V~r 86 (87)
T 2hzc_A 51 QDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRR 86 (87)
T ss_dssp SSSSEEEEEESSHHHHHHHG-GGTTCEETTEECEEEC
T ss_pred CCCcEEEEEcCCHHHHHHHH-hcCCCEECCeEEEEeC
Confidence 55899999999999999999 9999999999999974
No 163
>1x4c_A Splicing factor, arginine/serine-rich 1; structural genomics, RRM domain, NPPSFA, national project on protein structural and functional analyses; NMR {Mus musculus} SCOP: d.58.7.1
Probab=98.32 E-value=3.7e-07 Score=71.80 Aligned_cols=39 Identities=26% Similarity=0.324 Sum_probs=37.1
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecc-----cceeeecccchH
Q psy14476 9 GFGFVCFSSPEEATKAVTEMNGRIIGS-----KPLYVALAQRKE 47 (303)
Q Consensus 9 GfgFV~F~s~e~A~~Ai~~lnG~~l~G-----R~L~V~~A~~k~ 47 (303)
|||||+|.+.++|++||+.|||..|+| +.|+|.+|.++.
T Consensus 51 g~afV~f~~~~~a~~Ai~~l~g~~~~g~~~~~~~i~V~~a~~~~ 94 (108)
T 1x4c_A 51 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYIRVKVDGPRS 94 (108)
T ss_dssp TEEEEEESSHHHHHHHHHHSSSEEEECTTSCEEEEEEEESSCCS
T ss_pred CEEEEEECCHHHHHHHHHHHCcCCccCCcCcceEEEEEeCCCCC
Confidence 999999999999999999999999999 999999998754
No 164
>1fje_B Nucleolin RBD12, protein C23; RNP, RRM, RNA binding domain, RNA-protein complex, nucleolus, structural protein/RNA complex; NMR {Mesocricetus auratus} SCOP: d.58.7.1 d.58.7.1 PDB: 1rkj_A 2krr_A
Probab=98.31 E-value=2.9e-07 Score=76.95 Aligned_cols=44 Identities=25% Similarity=0.491 Sum_probs=40.5
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++|+ +|||..|.|+.|+|.++..+.
T Consensus 49 ~~~~~~g~afV~f~~~~~a~~A~-~l~g~~~~g~~l~v~~~~~~~ 92 (175)
T 1fje_B 49 RTGTNRKFGYVDFESAEDLEKAL-ELTGLKVFGNEIKLEKPKGRD 92 (175)
T ss_dssp EEETTTTEEEEEESSHHHHHHHH-HGGGEEETTEEEEEECCCCSS
T ss_pred CCCccccEEEEEECCHHHHHHHH-hcCCCEeCCeEEEEecCCCcc
Confidence 36889999999999999999999 599999999999999998763
No 165
>2ad9_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=98.31 E-value=3.3e-07 Score=74.84 Aligned_cols=41 Identities=22% Similarity=0.477 Sum_probs=37.2
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCC--ceecccceeeecccchH
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNG--RIIGSKPLYVALAQRKE 47 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG--~~l~GR~L~V~~A~~k~ 47 (303)
.||||||+|++.++|++||+.|++ ..|+||+|+|.||..++
T Consensus 66 ~kG~AFVeF~~~e~A~~Ai~~l~~~~~~l~Gr~l~V~~a~~k~ 108 (119)
T 2ad9_A 66 GKNQAFIEMNTEEAANTMVNYYTSVTPVLRGQPIYIQFSNHKE 108 (119)
T ss_dssp GGTEEEEECSCHHHHHHHHHHHHHHCCCBTTBCCEEEECSSSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhccCCceECCeEEEEEEccCCC
Confidence 489999999999999999999884 68999999999998764
No 166
>3pgw_S U1-70K; protein-RNA complex, U1 snRNA, SM fold, SM core, RRM, splici SNRNPS, splicing factors; HET: DNA; 4.40A {Homo sapiens} PDB: 3cw1_K 2l5i_A 2l5j_A*
Probab=98.27 E-value=5.2e-07 Score=88.45 Aligned_cols=45 Identities=16% Similarity=0.490 Sum_probs=42.3
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|+++|||||+|.+.++|.+||+.|||..|+|+.|.|.++..+.
T Consensus 139 ~tg~~kG~aFV~F~~~e~A~~Ai~~lng~~i~gr~i~V~~a~~~~ 183 (437)
T 3pgw_S 139 RSGKPRGYAFIEYEHERDMHSAYKHADGKKIDGRRVLVDVERGRT 183 (437)
T ss_pred CCCCccceEEEeeccHHHHHHHHHHcCCCEECCEEEEEEEeCCCC
Confidence 489999999999999999999999999999999999999998653
No 167
>3zzy_A Polypyrimidine tract-binding protein 1; protein binding, peptide binding, RNA recognition motif; 1.40A {Homo sapiens} PDB: 3zzz_A
Probab=98.26 E-value=6.2e-07 Score=74.46 Aligned_cols=41 Identities=17% Similarity=0.355 Sum_probs=37.8
Q ss_pred CcccE-EEEEeCCHHHHHHHHHHhCCceecc--cceeeecccch
Q psy14476 6 RSKGF-GFVCFSSPEEATKAVTEMNGRIIGS--KPLYVALAQRK 46 (303)
Q Consensus 6 kSkGf-gFV~F~s~e~A~~Ai~~lnG~~l~G--R~L~V~~A~~k 46 (303)
++||| |||+|.+.++|++|++.|||..|.| ++|+|.|++.+
T Consensus 63 ~~~gfqAFVef~~~~~A~~Ai~~LnG~~i~g~~~~LrI~~ak~~ 106 (130)
T 3zzy_A 63 KNNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLT 106 (130)
T ss_dssp ETTEEEEEEEESCHHHHHHHHHHHTTCEEETTEEEEEEEECSCS
T ss_pred CCCCcEEEEEECCHHHHHHHHHHcCCCeecCCCcEEEEEecCCC
Confidence 35788 9999999999999999999999998 99999999865
No 168
>2d9o_A DNAJ (HSP40) homolog, subfamily C, member 17; RRM domain, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.23 E-value=8.8e-07 Score=69.99 Aligned_cols=41 Identities=22% Similarity=0.332 Sum_probs=35.9
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
+++||||||+|.+.++|++||+.+++ +.+++|+|.|+..+.
T Consensus 51 ~~~rGfaFVeF~~~~~A~~Ai~~~~~--~~g~~l~V~~a~~~~ 91 (100)
T 2d9o_A 51 SKKPGTAVVEFATVKAAELAVQNEVG--LVDNPLKISWLEGQP 91 (100)
T ss_dssp SSSSSEEEEEESCHHHHHHHHHTCCB--CSSSBCEEECSSCCC
T ss_pred cCCCCEEEEEECCHHHHHHHHHhcCC--CCCCeEEEEEccCCC
Confidence 57899999999999999999998544 689999999998653
No 169
>2j8a_A Histone-lysine N-methyltransferase, H3 lysine-4 specific; histone methyltransferase, RRM fold, telomere, nuclear protein; 3.0A {Saccharomyces cerevisiae}
Probab=98.22 E-value=1.2e-06 Score=73.12 Aligned_cols=46 Identities=20% Similarity=0.125 Sum_probs=38.0
Q ss_pred CCCCcccEEEEEeCC----HHH----HHHHHH--HhCCceecccceeeecccchHH
Q psy14476 3 EDGRSKGFGFVCFSS----PEE----ATKAVT--EMNGRIIGSKPLYVALAQRKED 48 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s----~e~----A~~Ai~--~lnG~~l~GR~L~V~~A~~k~~ 48 (303)
+||+|||||||+|.+ +++ |.+||. .|||..|+||+|+|.+-.....
T Consensus 43 ~Tg~slGfgfVef~d~~g~~d~a~kAA~kAi~~~~lng~~I~Gr~irV~ln~~g~~ 98 (136)
T 2j8a_A 43 NSALPLHVYLIKYASSDGKINDAAKAAFSAVRKHESSGCFIMGFKFEVILNKHSIL 98 (136)
T ss_dssp TTCCEEEEEEEECC------CCHHHHHHHHHHHTTTTCEEETTEEEEEEECCTTHH
T ss_pred CCCceeeEEEEEECCCCCCcchHHHHHHHHHHHhhhcCCeecCcEEEEEECcccHH
Confidence 489999999999996 444 889998 7899999999999998765433
No 170
>3tyt_A Heterogeneous nuclear ribonucleoprotein L; ferredoxin-like, structural genomics, joint center for struc genomics, JCSG; 1.60A {Mus musculus} PDB: 3s01_A 3to8_A
Probab=98.19 E-value=1.1e-06 Score=77.36 Aligned_cols=40 Identities=15% Similarity=0.284 Sum_probs=37.6
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
+||||||+|.+.++|++||+.|||..|.||+|+|.+++.+
T Consensus 41 ~~g~afV~f~~~~~A~~Ai~~lng~~~~g~~l~v~~s~~~ 80 (205)
T 3tyt_A 41 KPGAAMVEMADGYAVDRAITHLNNNFMFGQKMNVCVSKQP 80 (205)
T ss_dssp STTCEEEEESSHHHHHHHHHHHTTCEETTEECEEEECSCS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCceEEEEEccCC
Confidence 5899999999999999999999999999999999998743
No 171
>4f02_A Polyadenylate-binding protein 1; mRNA, eukaryotic initiation factors PAIP1 and PAIP2, translation-RNA complex; 2.00A {Homo sapiens} PDB: 1cvj_A*
Probab=98.18 E-value=1.9e-06 Score=75.31 Aligned_cols=65 Identities=28% Similarity=0.498 Sum_probs=53.4
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCC
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRMQQMGQLFQPGSTGGYF 82 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~~~~~~~q~~~~~r~~~~~~~~~~~~~~~~f 82 (303)
.+|+++|||||+|.+.++|++||+.+|+..+.||.|+|.++......... ....+|
T Consensus 52 ~tg~~~G~afV~F~~~~~A~~Ai~~~~~~~~~g~~i~~~~~~~~~~~~~~------------------------~~~~l~ 107 (213)
T 4f02_A 52 ITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKS------------------------GVGNIF 107 (213)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCCCTHHHHH------------------------CTTEEE
T ss_pred CCCCccccccceeCCHHHHHHHHHHhhhhhcCCccccccccccccccccc------------------------ccccce
Confidence 47999999999999999999999999999999999999998865432110 123689
Q ss_pred CCCCCCCCc
Q psy14476 83 VPTLPQPQR 91 (303)
Q Consensus 83 ~~~lp~~~~ 91 (303)
|.||++...
T Consensus 108 v~nl~~~~t 116 (213)
T 4f02_A 108 IKNLDKSID 116 (213)
T ss_dssp EESCCTTCC
T ss_pred ECCcccccH
Confidence 999998654
No 172
>2e44_A Insulin-like growth factor 2 mRNA binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.18 E-value=1.6e-06 Score=66.18 Aligned_cols=41 Identities=24% Similarity=0.272 Sum_probs=37.5
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
..|.|||+|.+.++|++||+.|||..|+||+|+|.+|.+++
T Consensus 53 ~~~~afV~f~~~~~a~~Ai~~l~g~~~~g~~l~V~~a~~~~ 93 (96)
T 2e44_A 53 ETAVVNVTYSSKDQARQALDKLNGFQLENFTLKVAYIPDEM 93 (96)
T ss_dssp SSEEEEEEESSHHHHHHHHHHHTTCBCSSCBCEEEECCCCC
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCEECCcEEEEEEcCccc
Confidence 34559999999999999999999999999999999998763
No 173
>3smz_A Protein raver-1, ribonucleoprotein PTB-binding 1; RNA binding, RNA recognition motif, vincu alpha-actinin, nucleus, RNA binding protein; 1.99A {Homo sapiens} PDB: 3vf0_B* 3h2u_B 3h2v_E
Probab=98.14 E-value=2.1e-06 Score=77.60 Aligned_cols=44 Identities=30% Similarity=0.649 Sum_probs=41.8
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
.+|+++|||||+|.+.++|.+|++.|||..++|+.|.|.++.++
T Consensus 132 ~~g~~~g~afV~f~~~~~a~~A~~~l~~~~~~g~~i~v~~a~~~ 175 (284)
T 3smz_A 132 RTGQSKGYGFAEYMKKDSAARAKSDLLGKPLGPRTLYVHWTDAG 175 (284)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHHHTTCEETTEECEEEECCGG
T ss_pred CCCccceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCC
Confidence 48999999999999999999999999999999999999999865
No 174
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=98.13 E-value=1.6e-06 Score=78.58 Aligned_cols=71 Identities=18% Similarity=0.209 Sum_probs=48.9
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCC
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRMQQMGQLFQPGSTGGY 81 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~~~~~~~q~~~~~r~~~~~~~~~~~~~~~~ 81 (303)
|.+|+++|||||+|.+.++|.+|++.|||..|.|+.|.|.++.++...... . .. .. ....+
T Consensus 153 ~~~~~~~g~afV~f~~~~~a~~A~~~l~g~~~~g~~l~v~~a~~~~~~~~~---------~--------~~-~~-~~~~l 213 (292)
T 2ghp_A 153 LRFNTSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSNPLEKSKRT---------D--------SA-TL-EGREI 213 (292)
T ss_dssp ------CCEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECCCC---------------------------CC-TTTEE
T ss_pred CCCCCcceEEEEEECCHHHHHHHHHHhCCCEeCCcEEEEEECCCCcccccc---------c--------cc-CC-CCceE
Confidence 456889999999999999999999999999999999999999876543221 0 00 11 13478
Q ss_pred CCCCCCCC-Cc
Q psy14476 82 FVPTLPQP-QR 91 (303)
Q Consensus 82 f~~~lp~~-~~ 91 (303)
||.|||.. ..
T Consensus 214 ~v~nlp~~~~t 224 (292)
T 2ghp_A 214 MIRNLSTELLD 224 (292)
T ss_dssp EEEEECTTTCC
T ss_pred EEECCCcccCC
Confidence 99999987 44
No 175
>1l3k_A Heterogeneous nuclear ribonucleoprotein A1; nuclear protein hnRNP A1, RNA-recognition motif, RNA- binding, UP1, RNA binding protein; 1.10A {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 1u1k_A* 1u1l_A* 1u1m_A* 1u1n_A* 1u1o_A 1u1p_A* 1u1q_A 1u1r_A* 1pgz_A* 1ha1_A 1po6_A* 2up1_A* 1up1_A
Probab=98.13 E-value=2.1e-06 Score=72.72 Aligned_cols=68 Identities=22% Similarity=0.350 Sum_probs=50.2
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchHHHHHHHHHHHHHHHHHHhhhhcCCCCCCCCCCCCC
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRMQQMGQLFQPGSTGGYF 82 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~~r~~~~~~~~~q~~~~~r~~~~~~~~~~~~~~~~f 82 (303)
.+|++||||||+|.+.++|++|++. ++..|+|+.|.|.++..+...... .. .. ....+|
T Consensus 50 ~~g~~~g~afV~f~~~~~A~~A~~~-~~~~~~g~~l~v~~~~~~~~~~~~------------------~~-~~-~~~~l~ 108 (196)
T 1l3k_A 50 NTKRSRGFGFVTYATVEEVDAAMNA-RPHKVDGRVVEPKRAVSREDSQRP------------------GA-HL-TVKKIF 108 (196)
T ss_dssp TTCCEEEEEEEEESSHHHHHHHHHT-CSCEETTEECEEEECCC-------------------------------CCSEEE
T ss_pred CCCCccceEEEEeCCHHHHHHHHhc-CCCEECCEEeeeecccCccccccc------------------cc-CC-CcceEE
Confidence 4789999999999999999999986 999999999999999876433210 00 01 124789
Q ss_pred CCCCCCCCc
Q psy14476 83 VPTLPQPQR 91 (303)
Q Consensus 83 ~~~lp~~~~ 91 (303)
|.|||....
T Consensus 109 V~nLp~~~t 117 (196)
T 1l3k_A 109 VGGIKEDTE 117 (196)
T ss_dssp EECCTTTCC
T ss_pred EeCCCCCCC
Confidence 999998654
No 176
>2yh0_A Splicing factor U2AF 65 kDa subunit; PRE-mRNA splicing, transcription, RNA binding protein, mRNA processing; NMR {Homo sapiens} PDB: 2yh1_A
Probab=98.12 E-value=1.2e-06 Score=74.40 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=39.1
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
++++||||||+|.+.++|++|+ .|||..|+|+.|+|.++..+
T Consensus 47 ~~~~~g~afV~F~~~~~A~~Al-~l~g~~~~g~~i~v~~~~~~ 88 (198)
T 2yh0_A 47 INQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (198)
T ss_dssp EETTTTEEEEEESCSHHHHHHG-GGTTEEETTEEEEEECCCCC
T ss_pred ecCCCCEEEEEeCCHHHHHHHH-HhcCCEEcCceEEEeCCCCC
Confidence 4688999999999999999999 89999999999999998764
No 177
>2e5g_A U6 snRNA-specific terminal uridylyltransferase 1; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.11 E-value=1.6e-06 Score=66.28 Aligned_cols=37 Identities=19% Similarity=0.275 Sum_probs=34.8
Q ss_pred EEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 10 FGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 10 fgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
||||+|.+.++|++||+ |||..|+|+.|.|.++..+.
T Consensus 47 ~afV~f~~~~~a~~ai~-l~g~~~~g~~l~V~~a~~~~ 83 (94)
T 2e5g_A 47 FAIVEMGDVGAREAVLS-QSQHSLGGHRLRVRPREQKE 83 (94)
T ss_dssp EEEEEESSHHHHHHHHT-CSCCEETTEECCCBCSCCSC
T ss_pred EEEEEECCHHHHHHHHh-cCCeEECCEEEEEEECCcCC
Confidence 99999999999999999 99999999999999987653
No 178
>2e5i_A Heterogeneous nuclear ribonucleoprotein L-like; RRM domain, RBD, structural genomics, NPPSFA; NMR {Mus musculus}
Probab=98.10 E-value=2e-06 Score=70.60 Aligned_cols=38 Identities=32% Similarity=0.301 Sum_probs=35.6
Q ss_pred cE-EEEEeCCHHHHHHHHHHhCCceecc--cceeeecccch
Q psy14476 9 GF-GFVCFSSPEEATKAVTEMNGRIIGS--KPLYVALAQRK 46 (303)
Q Consensus 9 Gf-gFV~F~s~e~A~~Ai~~lnG~~l~G--R~L~V~~A~~k 46 (303)
|| |||+|++.++|.+|++.|||..|.| ++|+|.+|+.+
T Consensus 62 Gf~aFVef~~~~~A~~A~~~LnG~~i~g~~~~l~V~~Ak~~ 102 (124)
T 2e5i_A 62 GIQAMVEFESVLCAQKAKAALNGADIYAGCCTLKIEYARPT 102 (124)
T ss_dssp SEEEEEEESSHHHHHHHHHHHTTCCCBTTBSEEEEECCSCS
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCEecCCCeEEEEEEecCC
Confidence 87 9999999999999999999999988 68999999866
No 179
>2g4b_A Splicing factor U2AF 65 kDa subunit; protein-RNA complex, RNA splicing factor, RNA recognition motif, RNA binding protein/RNA complex; 2.50A {Homo sapiens} PDB: 2u2f_A
Probab=98.07 E-value=2.3e-06 Score=70.95 Aligned_cols=42 Identities=26% Similarity=0.423 Sum_probs=38.3
Q ss_pred CCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 4 tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
++++||||||+|.+.++|++|+ .|||..+.|++|+|.++...
T Consensus 47 ~~~~~g~afV~f~~~~~A~~A~-~~~~~~~~g~~i~v~~~~~~ 88 (172)
T 2g4b_A 47 INQDKNFAFLEFRSVDETTQAM-AFDGIIFQGQSLKIRRPHDY 88 (172)
T ss_dssp EETTTTEEEEEESSHHHHHHHG-GGTTCEETTEECEEECCSSC
T ss_pred ecCCCCEEEEEeCCHHHHHHHH-HhCCcEecCceeeecCCccc
Confidence 3678999999999999999999 89999999999999987643
No 180
>3beg_B Splicing factor, arginine/serine-rich 1; kinase, SR protein kinase, SR protein, PRE-mRNA splicing, at binding, chromosome partition; HET: SEP ANP; 2.90A {Homo sapiens} SCOP: d.58.7.1 PDB: 2o3d_A 1wg4_A
Probab=98.06 E-value=3.2e-06 Score=67.38 Aligned_cols=35 Identities=29% Similarity=0.282 Sum_probs=31.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecccceeeecc
Q psy14476 9 GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43 (303)
Q Consensus 9 GfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A 43 (303)
|||||+|.+.++|++||+.|||..|+|+.|+|.+.
T Consensus 52 g~afV~f~~~~~a~~Ai~~l~g~~~~gr~~~~~~i 86 (115)
T 3beg_B 52 GTGVVEFVRKEDMTYAVRKLDNTKFRSHEGETAYI 86 (115)
T ss_dssp SEEEEEESSHHHHHHHHHHHTTCBCCCTTSCCCBC
T ss_pred CEEEEEECCHHHHHHHHHHhCCCEECCcEeeeEEE
Confidence 99999999999999999999999999999444433
No 181
>2dnl_A Cytoplasmic polyadenylation element binding protein 3; RRM domain, RBD, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=98.03 E-value=3e-06 Score=67.29 Aligned_cols=39 Identities=13% Similarity=0.145 Sum_probs=33.5
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
|++||||||+|.+.++|++||+.|+ .++|+.|.|..+..
T Consensus 49 g~~~G~aFV~f~~~~~a~~Ai~~~~--~~~G~~~~~~~~~~ 87 (114)
T 2dnl_A 49 FPPKGYAFLLFQEESSVQALIDACL--EEDGKLYLCVSSPT 87 (114)
T ss_dssp SCTTSEEEECCSSHHHHHHHHHHSE--EETTEEEEEECCSS
T ss_pred CCcccEEEEEECCHHHHHHHHHhhh--hcCCcEEEeccCCC
Confidence 8999999999999999999999984 47888887776553
No 182
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=98.01 E-value=2.4e-06 Score=77.10 Aligned_cols=46 Identities=28% Similarity=0.507 Sum_probs=40.1
Q ss_pred CCCCCcccEEEEEeCCHHHHHHHHHHhC-Cceec---ccceeeecccchH
Q psy14476 2 SEDGRSKGFGFVCFSSPEEATKAVTEMN-GRIIG---SKPLYVALAQRKE 47 (303)
Q Consensus 2 d~tGkSkGfgFV~F~s~e~A~~Ai~~ln-G~~l~---GR~L~V~~A~~k~ 47 (303)
|.+|+++|||||+|.+.++|.+|++.|| +..+. +|+|.|.++...+
T Consensus 131 ~~~g~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~r~i~v~~~~~~~ 180 (261)
T 3sde_A 131 DDRGRATGKGFVEFAAKPPARKALERCGDGAFLLTTTPRPVIVEPMEQFD 180 (261)
T ss_dssp ETTSCEEEEEEEEESSHHHHHHHHHHHHHSCEESSSSCCBCEEEECCCEE
T ss_pred CCCCCcCcEEEEEeCCHHHHHHHHHHhcCCeEEecCCCceEEEeeccccC
Confidence 5789999999999999999999999995 55555 9999999998653
No 183
>2cjk_A Nuclear polyadenylated RNA-binding protein 4; HRP1, RNA-binding, RNA processing, mRNA processing, nonsense-mediated mRNA decay, cleavage; NMR {Saccharomyces cerevisiae} PDB: 2km8_C
Probab=98.01 E-value=4.9e-06 Score=68.56 Aligned_cols=43 Identities=30% Similarity=0.577 Sum_probs=39.0
Q ss_pred CCCCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 3 ~tGkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+|++||||||+|.+.++|++|++. +..++|+.|.|.++..+.
T Consensus 40 ~~g~~~g~afV~f~~~~~a~~A~~~--~~~~~g~~i~v~~~~~~~ 82 (167)
T 2cjk_A 40 ATGRSRGFGFLSFEKPSSVDEVVKT--QHILDGKVIDPKRAIPRD 82 (167)
T ss_dssp TTSSCCSCEEEEESSTHHHHHHHHS--CCEETTEECCCEECCCHH
T ss_pred CCCCccceEEEEEccHHHHHHHHhc--ccccCCeEcccccccchh
Confidence 4799999999999999999999984 789999999999998754
No 184
>3d2w_A TAR DNA-binding protein 43; DP-43 proteinopathy, TDP-43 inclusions, RNA recognition MOTI U, ALS, RRM; HET: DNA; 1.65A {Mus musculus}
Probab=97.97 E-value=6e-06 Score=62.97 Aligned_cols=40 Identities=20% Similarity=0.365 Sum_probs=29.7
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCcee--cccceeeecccchHHH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKEDR 49 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l--~GR~L~V~~A~~k~~r 49 (303)
+|||||||+|++.++|++ +++..+ .|+.|.|.+|.++.++
T Consensus 46 ~srGfaFV~F~~~~~A~~----~~~~~~~~~g~~v~v~~a~~k~~~ 87 (89)
T 3d2w_A 46 PFRAFAFVTFADDKVAQS----LCGEDLIIKGISVHISNAEPKHNK 87 (89)
T ss_dssp SCCSEEEEEESCHHHHHH----HTTCEEEETTEEEEEEECC-----
T ss_pred CCCCEEEEEECCHHHHHH----HcCCCcccCCEEEEEEEcCCCCcC
Confidence 389999999999999983 566654 5999999999987653
No 185
>3sde_A Paraspeckle component 1; RRM, anti parallel right handed coiled-coil, NOPS, DBHS, RNA protein, RNA binding; 1.90A {Homo sapiens} PDB: 3sde_B
Probab=97.85 E-value=1.1e-05 Score=72.65 Aligned_cols=40 Identities=38% Similarity=0.674 Sum_probs=37.8
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
+++||||||.|.+.++|++|+..|||..|.|+.|+|.++.
T Consensus 55 ~~~kg~afV~f~~~~~A~~A~~~l~g~~i~g~~l~v~~a~ 94 (261)
T 3sde_A 55 NRDRGFGFIRLESRTLAEIAKAELDGTILKSRPLRIRFAT 94 (261)
T ss_dssp ETTTTEEEEECSSHHHHHHHHHHHTTCEETTEECEEEECC
T ss_pred eCCCcEEEEEECCHHHHHHHHHHcCCcEECCceeEeeecc
Confidence 4679999999999999999999999999999999999986
No 186
>2adc_A Polypyrimidine tract-binding protein 1; RBD, RRM, protein-RNA complex, RNA binding protein/RNA complex; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1 PDB: 2evz_A
Probab=97.82 E-value=1.2e-05 Score=70.95 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=37.1
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
||||||+|.+.++|++|++.|||..|.|+.|+|.++..+
T Consensus 72 ~g~afV~F~~~~~A~~Ai~~l~g~~~~g~~l~v~~a~~~ 110 (229)
T 2adc_A 72 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 110 (229)
T ss_dssp SCCEEEEESCHHHHHHHHHHHTTCBCSSSBCEEECCSCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeECCeEEEEEEecCc
Confidence 899999999999999999999999999999999998754
No 187
>3nmr_A Cugbp ELAV-like family member 1; RRM, PRE-mRNA splicing, RNA binding protein-RNA complex; 1.85A {Homo sapiens} PDB: 3nna_A 3nnc_A 2dhs_A 3nnh_A
Probab=97.82 E-value=1.4e-05 Score=66.13 Aligned_cols=41 Identities=24% Similarity=0.349 Sum_probs=36.3
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceec---ccceeeecccch
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIG---SKPLYVALAQRK 46 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~---GR~L~V~~A~~k 46 (303)
++||||||+|.+.++|++|++.|||..+. ++.+.|.++..+
T Consensus 45 ~~~g~afV~f~~~~~A~~A~~~l~~~~~~~~~~~~~~~~~~~~~ 88 (175)
T 3nmr_A 45 QSKGCCFVTFYTRKAALEAQNALHNMKVLPGMHHPIQMKPADSE 88 (175)
T ss_dssp EEEEEEEEEESSHHHHHHHHHHHTTTCCCTTCSSCCEEEECGGG
T ss_pred CcceEEEEEECCHHHHHHHHHHhcCcEEccCCccceEEcccccc
Confidence 89999999999999999999999998876 677888877644
No 188
>1qm9_A Polypyrimidine tract-binding protein; ribonucleoprotein, RNP, RNA, spicing, translation; NMR {Homo sapiens} SCOP: d.58.7.1 d.58.7.1
Probab=97.77 E-value=1e-05 Score=69.02 Aligned_cols=39 Identities=23% Similarity=0.436 Sum_probs=37.2
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
+|||||+|.+.++|++|++.|||..|.|+.|+|.++..+
T Consensus 41 ~g~afV~f~~~~~a~~A~~~l~~~~~~g~~l~v~~a~~~ 79 (198)
T 1qm9_A 41 KENALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQ 79 (198)
T ss_dssp SSCCEEECTTTHHHHHHHHHHTTCCCSSCCCEEEECCCC
T ss_pred CCEEEEEECCHHHHHHHHHHhCCCeecCeEEEEEEecCC
Confidence 799999999999999999999999999999999998764
No 189
>2dnr_A Synaptojanin-1; RRM domain, RBD, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}
Probab=97.73 E-value=1.6e-05 Score=62.11 Aligned_cols=37 Identities=19% Similarity=0.305 Sum_probs=34.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecccceeeecccch
Q psy14476 9 GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 9 GfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k 46 (303)
+.+||+|.+.++|.+||+ |||..++||.|+|.++.+.
T Consensus 50 d~~fVtF~d~~sAlaAi~-mnG~~v~Gr~LkV~lkt~d 86 (91)
T 2dnr_A 50 DKMWVTFLEGSSALNVLS-LNGKELLNRTITIALKSPS 86 (91)
T ss_dssp SSEEEEESSHHHHHHGGG-GTTCEETTEEEEEEECCCS
T ss_pred CCEEEEECChHHHHHHHh-cCCeEeCCeEEEEEeCCCC
Confidence 458999999999999998 9999999999999998764
No 190
>3tht_A Alkylated DNA repair protein ALKB homolog 8; structural genomics, PSI-biology, northeast structural genom consortium, NESG; HET: AKG; 3.01A {Homo sapiens} PDB: 3thp_A*
Probab=97.67 E-value=3.1e-05 Score=73.93 Aligned_cols=39 Identities=23% Similarity=0.569 Sum_probs=34.4
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceec---cc--ceeeecccc
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIG---SK--PLYVALAQR 45 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~---GR--~L~V~~A~~ 45 (303)
+||||||+|++.++|++||+.|||+.+. |+ +|+|+|+..
T Consensus 55 ~kgfaFV~f~~~~~A~~Ai~~lnG~~~~~~~g~~~~ly~~~~~~ 98 (345)
T 3tht_A 55 NKPYSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVEK 98 (345)
T ss_dssp TCSEEEEEESSHHHHHHHHHHTTTCEEECTTSCEEECEEEECSS
T ss_pred CCCEEEEEECCHHHHHHHHHHhCCCccccccCCceEEEEEEeec
Confidence 6899999999999999999999999883 44 789998853
No 191
>1wf0_A TDP-43, TAR DNA-binding protein-43; structural genomics, RRM domain, riken structural genomics/proteomics initiative RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.60 E-value=1.3e-05 Score=60.13 Aligned_cols=40 Identities=25% Similarity=0.324 Sum_probs=31.8
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCceecccceeeecccchH
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~k~ 47 (303)
.+||||||+|.+.++|++|+.. ...+.|++|.|.++.++.
T Consensus 40 ~~~g~afV~f~~~~~a~~~~~~--~~~~~g~~l~v~~a~~~~ 79 (88)
T 1wf0_A 40 PFRAFAFVTFADDQIAQSLCGE--DLIIKGISVHISNAEPKH 79 (88)
T ss_dssp SCCSCCEEECSCHHHHHHTTTC--EEEETTEEEEEECCCCCC
T ss_pred CCCCEEEEEECCHHHHHHHhcC--CceeCCEEEEEEecCCCC
Confidence 3799999999999999865322 344589999999998764
No 192
>2ghp_A U4/U6 snRNA-associated splicing factor PRP24; RNA chaperone, RNA binding domain, RNA recognition motif, SP factor, snRNP, spliceosome; 2.70A {Saccharomyces cerevisiae} SCOP: d.58.7.1 d.58.7.1 d.58.7.1 PDB: 2go9_A 2kh9_A
Probab=97.45 E-value=0.0001 Score=66.59 Aligned_cols=36 Identities=19% Similarity=0.312 Sum_probs=33.9
Q ss_pred cccEEEEEeCCHHHHHHHHHHhCCceecccceeeecc
Q psy14476 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43 (303)
Q Consensus 7 SkGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A 43 (303)
++|||||+|.+.++|.+|++ +||..|.|+.|+|.++
T Consensus 80 ~~g~afV~f~~~~~A~~A~~-~~~~~~~g~~i~v~~~ 115 (292)
T 2ghp_A 80 NFRFARIEFARYDGALAAIT-KTHKVVGQNEIIVSHL 115 (292)
T ss_dssp SSEEEEEEESSHHHHHHHHT-TTTCEETTEECEEEEC
T ss_pred CcEEEEEEECCHHHHHHHHH-hCCcEeCCcEEEEEEC
Confidence 68999999999999999994 8999999999999975
No 193
>1ufw_A Synaptojanin 2; RNP domain, structural genomics, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=97.15 E-value=0.00023 Score=55.93 Aligned_cols=33 Identities=12% Similarity=0.265 Sum_probs=31.0
Q ss_pred EEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 11 GFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 11 gFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
+||+|.+.++|.+||+ |||..++||.|+|.+-.
T Consensus 61 ~fVtF~d~~sAl~AI~-ldG~~v~Gr~L~V~~k~ 93 (95)
T 1ufw_A 61 MLVTFADSHSALSVLD-VDGMKVKGRAVKISGPS 93 (95)
T ss_dssp EEEECSCSHHHHHHHH-GGGSEETTEEEEEECCC
T ss_pred EEEEEcChHHHHHHHh-cCCeeeCCeEEEEeccC
Confidence 9999999999999998 99999999999998643
No 194
>3u1l_A PRE-mRNA-splicing factor CWC2; CSMP, zinc finger; 1.64A {Saccharomyces cerevisiae} PDB: 3u1m_A 3tp2_A
Probab=96.42 E-value=0.0018 Score=58.66 Aligned_cols=28 Identities=32% Similarity=0.411 Sum_probs=26.2
Q ss_pred CcccEEEEEeCCHHHHHHHHHHhCCcee
Q psy14476 6 RSKGFGFVCFSSPEEATKAVTEMNGRII 33 (303)
Q Consensus 6 kSkGfgFV~F~s~e~A~~Ai~~lnG~~l 33 (303)
.+||||||+|.+.++|+.|++.|+|..|
T Consensus 177 ~~kG~AFV~F~~~~~Ae~A~~am~g~~l 204 (240)
T 3u1l_A 177 ESKNCGFVKFKYQANAEFAKEAMSNQTL 204 (240)
T ss_dssp GGGTEEEEEESSHHHHHHHHHHHTTCCC
T ss_pred CCCCEEEEEeCCHHHHHHHHHHhCCCEE
Confidence 3699999999999999999999999887
No 195
>2i2y_A Fusion protein consists of immunoglobin G- binding protein G and splicing factor,...; protein-RNA complex RRM alpha-beta sandwich BETA1-alpha1- BETA2-BETA3-alpha2-BETA4; NMR {Streptococcus SP} PDB: 2i38_A
Probab=96.18 E-value=0.0014 Score=53.76 Aligned_cols=41 Identities=15% Similarity=0.010 Sum_probs=37.9
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHh-CCceecccceeeecccch
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEM-NGRIIGSKPLYVALAQRK 46 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~l-nG~~l~GR~L~V~~A~~k 46 (303)
.+.+|+++|+|.+.++|++|+++| ||..++| .|.|+++..+
T Consensus 10 ~~l~G~~~ve~~~~~~A~~a~~~~~ng~~~~G-~~~~~~a~~~ 51 (150)
T 2i2y_A 10 KTLKGETTTEAVDAATAEKVFKQYANDNGVDG-EWTYDDATKT 51 (150)
T ss_dssp SSSCEEEEEECSSHHHHTTTHHHHHHHHTCCC-EEEEETTTTE
T ss_pred ccccccceeeecCHHHHHHHHHHHhcCCCCCC-ceecccccCc
Confidence 467999999999999999999999 9999999 9999998764
No 196
>2kn4_A Immunoglobulin G-binding protein G, splicing FACT arginine/serine-rich 2, S35, splicing factor SC35,; RRM domain, cell WALL; NMR {Streptococcus SP}
Probab=96.03 E-value=0.0028 Score=52.12 Aligned_cols=28 Identities=14% Similarity=-0.022 Sum_probs=24.9
Q ss_pred CCcccEEEEEeCCHHHHHHHHHHhCCce
Q psy14476 5 GRSKGFGFVCFSSPEEATKAVTEMNGRI 32 (303)
Q Consensus 5 GkSkGfgFV~F~s~e~A~~Ai~~lnG~~ 32 (303)
.+++|||||+|.+.++|++|++.+++..
T Consensus 10 ~~~~G~~fV~f~~~~~A~~al~~~~~~~ 37 (158)
T 2kn4_A 10 KTLKGETTTEAVDAATAEKVFKQYANDN 37 (158)
T ss_dssp SSCEEEEEEECSSHHHHHHHHHHHHHHH
T ss_pred ccccchhHHHHHHHHhHHHHHHhhcccC
Confidence 4799999999999999999999887643
No 197
>1owx_A Lupus LA protein, SS-B, LA; RRM, transcription; NMR {Homo sapiens} SCOP: d.58.7.1
Probab=92.97 E-value=0.11 Score=42.16 Aligned_cols=40 Identities=15% Similarity=0.238 Sum_probs=33.8
Q ss_pred EEEEEeCC-HHHHHHHHHHhC--CceecccceeeecccchHHH
Q psy14476 10 FGFVCFSS-PEEATKAVTEMN--GRIIGSKPLYVALAQRKEDR 49 (303)
Q Consensus 10 fgFV~F~s-~e~A~~Ai~~ln--G~~l~GR~L~V~~A~~k~~r 49 (303)
+|||.|.+ .++|..|++.|| +.+|+|..+.+......++.
T Consensus 57 tgfVrf~~~~~~A~~av~~ln~~~~~i~g~~~~~evL~GeeE~ 99 (121)
T 1owx_A 57 EGIILFKEKAKEALGKAKDANNGNLQLRNKEVTWEVLEGEVEK 99 (121)
T ss_dssp EEEEEESSCHHHHHHHHHHTTTSCBCTTSSSEEEEECCHHHHH
T ss_pred EEEEEECCChHHHHHHHHHhhcCCcEEeCcEEEEEECCCHHHH
Confidence 69999999 899999999995 78899998888877755443
No 198
>2l9w_A U4/U6 snRNA-associated-splicing factor PRP24; RRM, U6 snRNP, RNA binding protein; NMR {Saccharomyces cerevisiae}
Probab=92.82 E-value=0.13 Score=41.41 Aligned_cols=35 Identities=17% Similarity=0.183 Sum_probs=32.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecccceeeecc
Q psy14476 9 GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43 (303)
Q Consensus 9 GfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A 43 (303)
|=|+|+|.|...|-+|.=.|||.+|+||+|+|.-.
T Consensus 63 ~GAivef~d~~~AgKasLaL~G~ef~gr~Lr~gTv 97 (117)
T 2l9w_A 63 NGAIIIFRDSKFAAKMLMILNGSQFQGKVIRSGTI 97 (117)
T ss_dssp TEEEEECSCHHHHHHHHHHHSSEEETTEEEEEECH
T ss_pred CceEEEEccchhhHHHHhhcCCeeecCeEEEecCH
Confidence 45999999999999999999999999999999854
No 199
>1wey_A Calcipressin 1; structural genomics, RRM domain, riken structural genomics/proteomics initiative, RSGI, RNA binding protein; NMR {Mus musculus} SCOP: d.58.7.1
Probab=90.00 E-value=0.24 Score=39.33 Aligned_cols=37 Identities=22% Similarity=0.142 Sum_probs=34.0
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecccceeeecccc
Q psy14476 9 GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45 (303)
Q Consensus 9 GfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~~ 45 (303)
.-..|.|.++++|.+|-..|++..+.|+.|+|-+++.
T Consensus 47 RRirv~F~~~~~A~~AR~~Lh~~~f~g~~~r~YFgq~ 83 (104)
T 1wey_A 47 KRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQT 83 (104)
T ss_dssp TEEEEECSSTTHHHHHHHTSTTSEETTEECEEECCCC
T ss_pred eEEEEEeCChHHHHHHHHHhccceecCceeEEEecCC
Confidence 3467999999999999999999999999999999983
No 200
>3p3d_A Nucleoporin 53; structural genomics, PSI-2, protein structure initiative, NE structural genomix research consortium, nysgxrc; 2.35A {Pichia guilliermondii}
Probab=70.12 E-value=4 Score=33.57 Aligned_cols=36 Identities=22% Similarity=0.330 Sum_probs=31.4
Q ss_pred ccEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 8 kGfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
..+-.|.|+++.+|.+|+.+ ||..|+|--|-|....
T Consensus 62 ~NWikItYds~~~A~rAL~~-NG~ii~G~mIGV~Py~ 97 (132)
T 3p3d_A 62 NSWTKITYDNPASAVDALLE-NGAVFNGVLLGVIPYT 97 (132)
T ss_dssp TTEEEEEBSSHHHHHHHHTT-TTCEETTEECEEEECC
T ss_pred CcEEEEEcCCHHHHHHHHHh-CCeEeCcEEEEEEECC
Confidence 35679999999999999987 9999999877787774
No 201
>1wwh_A Nucleoporin 35, nucleoporin; structural genomics, MPPN, riken structural genomics/proteomics initiative, RSGI, protein transport; 2.70A {Mus musculus} SCOP: d.58.7.1
Probab=46.87 E-value=21 Score=28.60 Aligned_cols=37 Identities=27% Similarity=0.372 Sum_probs=29.4
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecc-cceeeecccch
Q psy14476 9 GFGFVCFSSPEEATKAVTEMNGRIIGS-KPLYVALAQRK 46 (303)
Q Consensus 9 GfgFV~F~s~e~A~~Ai~~lnG~~l~G-R~L~V~~A~~k 46 (303)
-+-.|.|++..+|++|+.+ ||..|+| --|-|.....+
T Consensus 60 NWihI~Y~s~~~A~rAL~k-NG~ii~g~~mIGV~p~~d~ 97 (119)
T 1wwh_A 60 NWMHIRYQSKLQARKALSK-DGRIFGESIMIGVKPCIDK 97 (119)
T ss_dssp SEEEEEESSHHHHHHHHTT-TTCEETTTEECEEEECCCH
T ss_pred CeEEEEeCCHHHHHHHHHh-CCeEecCCEEEEEEECCCH
Confidence 4778999999999999986 9999985 44556665544
No 202
>2g0c_A ATP-dependent RNA helicase DBPA; RNA recognition motif, hydrolase; 1.70A {Bacillus subtilis} PDB: 3moj_B
Probab=46.10 E-value=9.2 Score=27.30 Aligned_cols=35 Identities=17% Similarity=0.208 Sum_probs=26.2
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 9 GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 9 GfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
.|.||+-.. +.++.+++.|++..+.|+.+.|..+.
T Consensus 41 ~~s~v~v~~-~~~~~~~~~l~~~~i~g~~~~v~~~~ 75 (76)
T 2g0c_A 41 NASYVEILN-GKGPHVLKVMKNTTVKGKQLKVNKAN 75 (76)
T ss_dssp SCEEEEECT-TCHHHHHHHHTTCCC---CCCEEECC
T ss_pred CcEEEEECH-HHHHHHHHHhccccCcCceEEEEECC
Confidence 578888754 56888999999999999999998764
No 203
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=36.73 E-value=37 Score=23.99 Aligned_cols=42 Identities=19% Similarity=0.266 Sum_probs=29.9
Q ss_pred CCCchh-hcccCChHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q psy14476 254 AGKITG-MLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295 (303)
Q Consensus 254 A~KITG-MlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~~~ 295 (303)
...|+| .||.++.++|-.|==..-.-+.||-.|+.-|+....
T Consensus 30 ~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~~~e 72 (74)
T 2gle_A 30 AQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKMSLE 72 (74)
T ss_dssp TTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHHHHH
T ss_pred HcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 346777 688899999776633334468889899988886543
No 204
>2dhx_A Poly (ADP-ribose) polymerase family, member 10 variant; RRM domain, RNA- binding, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=35.24 E-value=31 Score=27.09 Aligned_cols=35 Identities=17% Similarity=0.282 Sum_probs=28.5
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceecccceeeeccc
Q psy14476 9 GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44 (303)
Q Consensus 9 GfgFV~F~s~e~A~~Ai~~lnG~~l~GR~L~V~~A~ 44 (303)
+-|+|+|.+++.|++.++. .-+.|.+-+|.|.-..
T Consensus 48 ~~AvItF~d~~va~rVL~k-~~H~L~~~~LsV~P~~ 82 (104)
T 2dhx_A 48 CGGVLTFREPADAERVLAQ-ADHELHGAQLSLRPAP 82 (104)
T ss_dssp TEEEEEESSHHHHHHHHTC-SCCBSSSSBCEEEECC
T ss_pred CcEEEEEcChHHHHHHhcC-CcceecCeEEEEEcCC
Confidence 5689999999999999874 4678888888887543
No 205
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=32.88 E-value=20 Score=24.64 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.7
Q ss_pred HHHHHhhCChHHHHHHHHHHH
Q psy14476 267 AELLYMLEHNESLKSKVEEAV 287 (303)
Q Consensus 267 ~ell~ll~~~~~L~~kv~eA~ 287 (303)
+-|++||.+++.+-.+|-||+
T Consensus 18 qaLihLIqnD~~Fl~~IHeAY 38 (51)
T 2wx3_A 18 DTLIHLIKNDSSFLSTLHEVY 38 (51)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 457899999999999999996
No 206
>3lcn_C MRNA transport factor GFD1; nuclear mRNA export, metal-binding, nucleus, RNA-binding, ZI finger, membrane, nuclear pore complex; 2.00A {Saccharomyces cerevisiae}
Probab=32.16 E-value=47 Score=19.95 Aligned_cols=19 Identities=37% Similarity=0.478 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14476 277 ESLKSKVEEAVAVLQAHQA 295 (303)
Q Consensus 277 ~~L~~kv~eA~~vl~~~~~ 295 (303)
+.|+.||+|--++|++...
T Consensus 9 ~lLKKKIEEQr~i~~~~~H 27 (29)
T 3lcn_C 9 KLLKKKIEEQREILQKTHH 27 (29)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhcc
Confidence 5799999999999987553
No 207
>3bs7_A Protein aveugle; sterIle alpha motif (SAM) domain, cytoplasm, membrane, sensory transduction, vision, signaling protein; 1.90A {Drosophila melanogaster}
Probab=30.69 E-value=83 Score=22.29 Aligned_cols=41 Identities=20% Similarity=0.221 Sum_probs=31.7
Q ss_pred CCCchh-hcccCChHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q psy14476 254 AGKITG-MLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294 (303)
Q Consensus 254 A~KITG-MlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~~ 294 (303)
...|+| .||+++.++|-.|==..-.-+.||-.|+.-|+...
T Consensus 31 ~~~I~G~~Ll~L~~~dL~~lGI~~~g~r~~il~~I~~Lr~~~ 72 (78)
T 3bs7_A 31 QHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRLKT 72 (78)
T ss_dssp HTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHH
T ss_pred HCCCCHHHHhhCCHHHHhHcCCCCHHHHHHHHHHHHHHHhHH
Confidence 345676 57889999998875555567889999999998655
No 208
>3bs5_B Connector enhancer of kinase suppressor of RAS 2; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Homo sapiens}
Probab=29.46 E-value=70 Score=22.80 Aligned_cols=40 Identities=33% Similarity=0.292 Sum_probs=30.4
Q ss_pred CCchh-hcccCChHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q psy14476 255 GKITG-MLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294 (303)
Q Consensus 255 ~KITG-MlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~~ 294 (303)
.+||| .||.++.++|-.|=-..---+.||-.|++.|+...
T Consensus 33 ~~i~G~~Ll~L~~~dL~~lGI~~~ghr~~il~~I~~L~~~~ 73 (80)
T 3bs5_B 33 EKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALN 73 (80)
T ss_dssp HTCCHHHHHTCCHHHHHHTTCCCHHHHHHHHHHHHHHHHHH
T ss_pred cCCCHHHHHHCCHHHHHHcCCCCHHHHHHHHHHHHHHHHhh
Confidence 45777 57789999998874444557889999999998654
No 209
>2ean_A Connector enhancer of kinase suppressor of RAS 2; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=28.63 E-value=76 Score=22.86 Aligned_cols=40 Identities=33% Similarity=0.292 Sum_probs=30.7
Q ss_pred CCchh-hcccCChHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q psy14476 255 GKITG-MLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294 (303)
Q Consensus 255 ~KITG-MlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~~ 294 (303)
..||| .||+++.++|-.|=-..---+.||-.|++.|+...
T Consensus 37 ~~I~G~~Ll~Lt~~dL~~LGI~~~ghr~~il~~I~~L~~~~ 77 (83)
T 2ean_A 37 EKISGDQLLRITHQELEDLGVSRIGHQELILEAVDLLCALN 77 (83)
T ss_dssp HTCCHHHHTTCCHHHHHHHTCCCSHHHHHHHHHHHHHHHHH
T ss_pred CCCCHHHHhhCCHHHHHHhCCCCHHHHHHHHHHHHHHHHHh
Confidence 45776 57889999998875455557889999999998654
No 210
>1uw4_A UPF3X; nonsense mediated mRNA decay protein, RNA-binding protein, N domain, MIF4G domain; 1.95A {Homo sapiens} SCOP: d.58.7.4
Probab=27.56 E-value=49 Score=25.06 Aligned_cols=28 Identities=11% Similarity=0.246 Sum_probs=24.4
Q ss_pred cEEEEEeCCHHHHHHHHHHhCCceeccc
Q psy14476 9 GFGFVCFSSPEEATKAVTEMNGRIIGSK 36 (303)
Q Consensus 9 GfgFV~F~s~e~A~~Ai~~lnG~~l~GR 36 (303)
.-|||.|.+.+++..-.+.++|+.+.+.
T Consensus 46 SRaYi~f~~~e~v~~f~~~~~g~~F~D~ 73 (91)
T 1uw4_A 46 ARAYINFKNQEDIILFRDRFDGYVFLDN 73 (91)
T ss_dssp EEEEEEESSSHHHHHHHHHHTTCEEECT
T ss_pred eEEEEEeCCHHHHHHHHHHhCCcEEEcC
Confidence 4689999999999999999999987643
No 211
>1uqv_A STE50 protein; SAM, sterIle alpha motif, helical, protein-protein interaction domain, growth arrest, signaling protein; NMR {Saccharomyces cerevisiae} SCOP: a.60.1.2 PDB: 1z1v_A
Probab=26.76 E-value=45 Score=25.25 Aligned_cols=37 Identities=16% Similarity=0.163 Sum_probs=31.4
Q ss_pred CCchhhcc-cCChHHHHHhhCChHHHHHHHHHHHHHHH
Q psy14476 255 GKITGMLL-EIDNAELLYMLEHNESLKSKVEEAVAVLQ 291 (303)
Q Consensus 255 ~KITGMlL-e~~~~ell~ll~~~~~L~~kv~eA~~vl~ 291 (303)
.+|||++| |+..+++=+|..+.-.++-|+--.+.-|+
T Consensus 40 ndItG~vL~eL~leDlKEL~i~s~~~r~~lk~~In~Lr 77 (85)
T 1uqv_A 40 NDIVGDLLPELCLQDCQDLCDGDLNKAIKFKILINKMR 77 (85)
T ss_dssp SCCCGGGHHHHHHHHHHHTSSSCHHHHHHHHHHHHHHH
T ss_pred cCCchhhHHHcCHHHHHHhCchHHHHHHHHHHHHHHHH
Confidence 68999865 58889999998888888999888888775
No 212
>2wx4_A DCP1, decapping protein 1; asymmetric assembly, trimerization module, mRNA decapping, P-BODY component, structural protein; 2.80A {Drosophila melanogaster}
Probab=26.64 E-value=20 Score=24.09 Aligned_cols=21 Identities=14% Similarity=0.490 Sum_probs=18.5
Q ss_pred HHHHHhhCChHHHHHHHHHHH
Q psy14476 267 AELLYMLEHNESLKSKVEEAV 287 (303)
Q Consensus 267 ~ell~ll~~~~~L~~kv~eA~ 287 (303)
+-|+|||.+++.+-.||-||.
T Consensus 16 qal~hLiknD~~Fl~~iHeAY 36 (46)
T 2wx4_A 16 QAFTYLIQNDKEFANKLHKAY 36 (46)
T ss_dssp HHHHHHHHHCTTHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 557899999999999999996
No 213
>3bs5_A Protein aveugle; sterIle alpha motif, SAM domain, SAM domain dimer, SAM domain complex, cytoplasm, membrane; 2.00A {Drosophila melanogaster}
Probab=26.03 E-value=1.3e+02 Score=22.96 Aligned_cols=42 Identities=19% Similarity=0.213 Sum_probs=32.0
Q ss_pred CCCchh-hcccCChHHHHHhhCChHHHHHHHHHHHHHHHHHHH
Q psy14476 254 AGKITG-MLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 295 (303)
Q Consensus 254 A~KITG-MlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~~~ 295 (303)
...|+| .||.++.++|-.|=-..-.-+.||-.|+..|+....
T Consensus 51 ~~~I~G~~Ll~Lt~~dLk~LGI~~~GhR~kIl~~I~~Lr~~~~ 93 (106)
T 3bs5_A 51 QHDITGRALLRITDSSLQRMGVTDNRDREAIWREIVKQRLKTD 93 (106)
T ss_dssp HTTCCHHHHTTCCHHHHHHHTCCCHHHHHHHHHHHHHHHHHHH
T ss_pred HcCccHHHHhhCCHHHHHhcCCCCHHHHHHHHHHHHHHHHHhh
Confidence 456777 578899999988744445578899999999986554
No 214
>2e8o_A SAM domain and HD domain-containing protein 1; cell-free protein synthesis, protein regulation, structural genomics, NPPSFA; NMR {Homo sapiens}
Probab=22.63 E-value=1e+02 Score=23.33 Aligned_cols=39 Identities=18% Similarity=0.191 Sum_probs=28.6
Q ss_pred CCCchh-hcccCChHHHHHhhCChHHHHHHHHHHHHHHHH
Q psy14476 254 AGKITG-MLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 292 (303)
Q Consensus 254 A~KITG-MlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~ 292 (303)
...||| .||+++.++|-+|==..---+.||-.|++-|+.
T Consensus 55 ~~~I~G~~Ll~Lt~~dLkeLGI~~~G~R~kil~~I~~Lr~ 94 (103)
T 2e8o_A 55 ENEITGALLPCLDESRFENLGVSSLGERKKLLSYIQRLVQ 94 (103)
T ss_dssp HTTCCTTTTTTCCHHHHHHTTCCCHHHHHHHHHHHHHHHT
T ss_pred HcCCCHHHHHhCCHHHHHHcCCCCHHHHHHHHHHHHHHHH
Confidence 355777 577899888877644455568899999998874
No 215
>1wwv_A Connector enhancer of kinase suppressor of RAS 1; structural genomics, protein regulation, transcription; NMR {Homo sapiens} SCOP: a.60.1.2
Probab=21.83 E-value=53 Score=24.71 Aligned_cols=41 Identities=20% Similarity=0.146 Sum_probs=31.5
Q ss_pred CCCchh-hcccCChHHHHHhhCChHHHHHHHHHHHHHHHHHH
Q psy14476 254 AGKITG-MLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 294 (303)
Q Consensus 254 A~KITG-MlLe~~~~ell~ll~~~~~L~~kv~eA~~vl~~~~ 294 (303)
...||| .||.|+.++|-.|=-..---+.+|-+|++.|+...
T Consensus 37 ~~~I~G~~LL~Lt~~dL~~LGI~~~Ghr~~Il~~I~~L~~~~ 78 (91)
T 1wwv_A 37 DWQLPGKNLLQLCPQSLEALAVRSLGHQELILGGVEQLQALS 78 (91)
T ss_dssp HHCCCHHHHTTCCTTTGGGGTCCCHHHHHHHHHHHHHHHHHH
T ss_pred hcCccHHHHhhCCHHHHHHcCCCcHhHHHHHHHHHHHHHHHh
Confidence 355888 58889999988874444557899999999998654
Done!