Your job contains 1 sequence.
>psy14476
MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR
IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTA
QGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQ
TGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQEPLTSTMLAAAQPQEQKQMLGE
RLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAV
KKE
The BLAST search returned 7 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14476
(303 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 417 1.1e-67 3
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 686 1.5e-67 1
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 678 1.1e-66 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 667 1.5e-65 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 662 5.2e-65 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 661 6.7e-65 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 660 8.5e-65 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 642 6.9e-63 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 640 1.1e-62 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 637 2.3e-62 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 635 3.8e-62 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 626 3.4e-61 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 625 4.3e-61 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 625 4.3e-61 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 625 4.3e-61 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 625 4.3e-61 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 625 4.3e-61 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 625 4.3e-61 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 625 4.3e-61 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 623 7.1e-61 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 622 9.0e-61 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 621 1.2e-60 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 608 2.7e-59 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 605 5.7e-59 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 605 5.7e-59 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 593 1.1e-57 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 583 1.2e-56 1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 582 1.6e-56 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 580 2.5e-56 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 572 1.8e-55 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 555 1.1e-53 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 349 1.8e-53 2
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 549 4.9e-53 1
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 544 1.7e-52 1
UNIPROTKB|F1M0P4 - symbol:F1M0P4 "Uncharacterized protein... 324 6.1e-52 2
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 526 1.3e-50 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 515 2.0e-49 1
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 515 2.0e-49 1
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 319 3.5e-49 2
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 378 1.8e-47 2
UNIPROTKB|H0YEU6 - symbol:PABPC4 "Polyadenylate-binding p... 422 1.4e-39 1
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 417 4.8e-39 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 417 7.0e-39 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 417 1.3e-38 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 417 1.9e-38 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 409 1.2e-37 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 405 4.9e-37 1
UNIPROTKB|H0YB86 - symbol:PABPC1 "Polyadenylate-binding p... 367 9.5e-34 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 230 5.5e-33 2
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 220 9.0e-33 2
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 204 3.0e-30 2
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 204 3.0e-30 2
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 250 3.9e-30 2
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 314 6.3e-30 2
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 227 1.1e-28 2
SGD|S000000967 - symbol:PAB1 "Poly(A) binding protein" sp... 249 1.1e-27 2
UNIPROTKB|H0YAR2 - symbol:PABPC1 "Polyadenylate-binding p... 308 1.7e-27 1
UNIPROTKB|H0YBQ4 - symbol:PABPC1 "Polyadenylate-binding p... 308 1.7e-27 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 302 4.3e-26 1
UNIPROTKB|H0Y6X6 - symbol:PABPC4 "Polyadenylate-binding p... 265 6.4e-26 2
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 191 2.3e-25 2
UNIPROTKB|H0YB75 - symbol:PABPC1 "Polyadenylate-binding p... 277 3.3e-24 1
UNIPROTKB|H0YAS6 - symbol:PABPC1 "Polyadenylate-binding p... 276 4.2e-24 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 265 3.8e-22 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 224 3.0e-20 2
UNIPROTKB|Q4VXT4 - symbol:PABPC1L "HCG2019100, isoform CR... 227 6.5e-19 1
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 232 1.9e-18 1
UNIPROTKB|Q4VXT6 - symbol:PABPC1L "Polyadenylate-binding ... 220 3.6e-18 1
UNIPROTKB|H0Y386 - symbol:PABPC1L "Polyadenylate-binding ... 219 4.6e-18 1
UNIPROTKB|Q4VXT5 - symbol:PABPC1L "Polyadenylate-binding ... 217 7.5e-18 1
UNIPROTKB|H0YAS7 - symbol:PABPC1 "Polyadenylate-binding p... 199 6.0e-16 1
UNIPROTKB|P0CB38 - symbol:PABPC4L "Polyadenylate-binding ... 192 1.1e-14 1
UNIPROTKB|J3KTH5 - symbol:PABPC4L "Polyadenylate-binding ... 192 1.7e-14 1
UNIPROTKB|F1RKX5 - symbol:F1RKX5 "Uncharacterized protein... 183 3.0e-14 1
UNIPROTKB|Q5JQF3 - symbol:PABPC5 "Polyadenylate-binding p... 165 2.8e-12 1
UNIPROTKB|H0YAW6 - symbol:PABPC1 "Polyadenylate-binding p... 150 1.6e-10 1
UNIPROTKB|H0YER0 - symbol:PABPC4 "Polyadenylate-binding p... 148 2.8e-10 1
UNIPROTKB|Q96DU9 - symbol:PABPC5 "Polyadenylate-binding p... 165 4.4e-10 1
TAIR|locus:2009036 - symbol:PAB1 "poly(A) binding protein... 165 5.0e-10 1
RGD|1559517 - symbol:Pabpc4l "poly(A) binding protein, cy... 162 9.5e-10 1
UNIPROTKB|H0YAP2 - symbol:PABPC1 "Polyadenylate-binding p... 143 1.1e-09 1
UNIPROTKB|F1N4Q4 - symbol:PABPC5 "Uncharacterized protein... 160 1.8e-09 1
UNIPROTKB|F1PQV8 - symbol:PABPC5 "Uncharacterized protein... 156 5.5e-09 1
RGD|2322083 - symbol:LOC100360473 "poly A binding protein... 153 1.3e-08 1
TAIR|locus:2094922 - symbol:PAB6 "poly(A) binding protein... 153 2.4e-08 1
TAIR|locus:2090654 - symbol:MPC "maternally expressed pab... 131 2.4e-08 1
UNIPROTKB|H0YCC8 - symbol:PABPC4 "Polyadenylate-binding p... 138 3.5e-08 1
DICTYBASE|DDB_G0290745 - symbol:pabpc1B "putative polyade... 120 4.9e-08 2
UNIPROTKB|H3BNY3 - symbol:PABPC3 "Polyadenylate-binding p... 141 2.7e-07 1
UNIPROTKB|E7ET84 - symbol:UBR5 "E3 ubiquitin-protein liga... 140 7.8e-07 1
UNIPROTKB|I3LGM1 - symbol:LOC100738301 "Uncharacterized p... 140 1.9e-06 1
UNIPROTKB|K7GPI8 - symbol:LOC100738301 "Uncharacterized p... 140 3.2e-06 1
UNIPROTKB|J9P5M9 - symbol:UBR5 "Uncharacterized protein" ... 140 4.9e-06 1
POMBASE|SPAC343.07 - symbol:mug28 "RNA-binding protein Mu... 132 8.1e-06 1
RGD|621236 - symbol:Ubr5 "ubiquitin protein ligase E3 com... 143 9.3e-06 2
UNIPROTKB|Q62671 - symbol:Ubr5 "E3 ubiquitin-protein liga... 143 9.3e-06 2
TAIR|locus:2077137 - symbol:AT3G46020 species:3702 "Arabi... 107 1.2e-05 1
UNIPROTKB|Q29RT0 - symbol:RBMX "RNA-binding motif protein... 126 1.6e-05 2
MGI|MGI:1918040 - symbol:Ubr5 "ubiquitin protein ligase E... 140 2.1e-05 2
FB|FBgn0004838 - symbol:Hrb27C "Heterogeneous nuclear rib... 94 2.2e-05 2
WARNING: Descriptions of 22 database sequences were not reported due to the
limiting value of parameter V = 100.
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 417 (151.9 bits), Expect = 1.1e-67, Sum P(3) = 1.1e-67
Identities = 93/163 (57%), Positives = 109/163 (66%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 255 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 314
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 315 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGG--R 371
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSAR--PITGQ 155
P G QG P+ + +S PR + G ++R P T Q
Sbjct: 372 PQG--FQGMPSALR-QSGPRPALRHLAPTGNAPASRGLPTTAQ 411
Score = 265 (98.3 bits), Expect = 1.1e-67, Sum P(3) = 1.1e-67
Identities = 54/67 (80%), Positives = 61/67 (91%)
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ES
Sbjct: 496 EPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPES 555
Query: 279 LKSKVEE 285
L+SKV+E
Sbjct: 556 LRSKVDE 562
Score = 136 (52.9 bits), Expect = 6.8e-36, Sum P(3) = 6.8e-36
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 157 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQ 211
Score = 106 (42.4 bits), Expect = 8.9e-33, Sum P(3) = 8.9e-33
Identities = 21/69 (30%), Positives = 43/69 (62%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+G SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 63 ENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFT 120
Query: 63 NMRMQQMGQ 71
N+ ++ G+
Sbjct: 121 NVYIKNFGE 129
Score = 39 (18.8 bits), Expect = 7.6e-26, Sum P(3) = 7.6e-26
Identities = 9/35 (25%), Positives = 20/35 (57%)
Query: 28 MNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
MN +I KP+ + +QR RK+ + + +++ +
Sbjct: 1 MNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNL 35
Score = 36 (17.7 bits), Expect = 1.1e-67, Sum P(3) = 1.1e-67
Identities = 8/16 (50%), Positives = 11/16 (68%)
Query: 165 PMQAPGPASVSAAGRQ 180
P+QAP PA V G++
Sbjct: 482 PLQAPQPA-VHVQGQE 496
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 686 (246.5 bits), Expect = 1.5e-67, P = 1.5e-67
Identities = 163/295 (55%), Positives = 188/295 (63%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP + GGYF+P +PQ Q +Y P QM Q+RP PRW R
Sbjct: 386 IAGMRALPANTIINQFQPAA-GGYFMPAVPQAQSRPTYYAPNQMAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSAR--PITGQSTMGPRGGGPMQAPGPA 172
P G QG PN + +S PR + G ++R P++ Q +G G AP P
Sbjct: 443 PQG--FQGMPNAMR-QSGPRPALRHLAPAGTAPASRGLPVSAQR-VGVTTAGQSLAPRPP 498
Query: 173 SVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQ 230
+ A R Y KY VR+P EPLT++MLAAA
Sbjct: 499 VAAPAPRAVPPY-KYASSVRSPHPPVQPLQAPQPAVHVQGQ-------EPLTASMLAAAP 550
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKVEE
Sbjct: 551 PQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVEE 605
Score = 140 (54.3 bits), Expect = 1.0e-06, P = 1.0e-06
Identities = 28/55 (50%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSFEKHEDANKAVEEMNGKDINGKMVFVGRAQKKVERQAELKRRFEQ 282
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 678 (243.7 bits), Expect = 1.1e-66, P = 1.1e-66
Identities = 160/295 (54%), Positives = 185/295 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E+GRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 327 MLEEGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 386
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
IA MR + FQP GGYF+P +PQ Q +Y P Q+TQ+RP PRW Q
Sbjct: 387 IAGMRAMPANAIINQFQPA--GGYFMPAVPQAQNRTTYYAPNQLTQMRPNPRWQ---QQG 441
Query: 115 PSGQTA-QGFPNIPQFRSAPRASTGQTVIRGANMSARPI-TGQSTMGPRGGGPMQAPGPA 172
GQ QG P+ + + PRA+ +N R + TG +G G G P PA
Sbjct: 442 GRGQGGFQGMPSSLR-QPGPRANIRHLAPNASNQGPRGMPTGAQRVG--GTGQPMGPRPA 498
Query: 173 SVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQ 230
R Y KY +RN EPLT++MLAAA
Sbjct: 499 MGMTTPRAMPPY-KYASTIRN----TQPQVVQPIALQQAQPAVHVQGQEPLTASMLAAAP 553
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE +ESL+SKVEE
Sbjct: 554 PQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESHESLRSKVEE 608
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 25/55 (45%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+S+GFGFV + E+A KAV EMNG + K ++V AQ+K +R+A L ++ Q
Sbjct: 229 GKSRGFGFVSYEKHEDANKAVEEMNGTELNGKTVFVGRAQKKMERQAELKRKFEQ 283
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 667 (239.9 bits), Expect = 1.5e-65, P = 1.5e-65
Identities = 160/295 (54%), Positives = 184/295 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL SQYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTSQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R L +QP GYF+ +PQ Q +Y +Q+ Q+RP PRWA +RP
Sbjct: 386 MASVRAVPNPVLNPYQPAPPSGYFMAAIPQAQNRAAYYPTSQLAQLRPSPRWATQG-VRP 444
Query: 116 SGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPIT----GQSTMGPRGGGPMQAPGP 171
Q Q PN SAPR T V R A+ R +T G MGPR A GP
Sbjct: 445 --QHFQNMPNAAVRPSAPRPQTFNPV-RPASQVPRMMTSQRMGSQAMGPRPAAAGAATGP 501
Query: 172 ASVSAAGRQTGGYNKYP-VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQ 230
A V R Y P VRNP EPLT++MLAAA
Sbjct: 502 AQV----RGVPQYKYAPGVRNP----QQRMPTQPQVPMQQPAVHVQGQEPLTASMLAAAP 553
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 554 PQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 608
Score = 138 (53.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M++D G+SKGFGFV F E+A +AV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 223 MTDDSGKSKGFGFVSFERHEDAQRAVDEMNGKEMNGKQVYVGRAQKKGERQTELKRKFEQ 282
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 662 (238.1 bits), Expect = 5.2e-65, P = 5.2e-65
Identities = 160/295 (54%), Positives = 186/295 (63%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSAR--PITGQSTMGPRGGGPMQAPGPA 172
P G QG P+ + +S PR + G ++R P T Q +G P AP
Sbjct: 443 PQG--FQGMPSALR-QSGPRPALRHLAPTGNAPASRGLPTTAQR-VGVPTAVPNLAPRAT 498
Query: 173 SVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQ 230
+AA R Y KY VR+P EPLT++MLAAA
Sbjct: 499 VAAAAPRAVAPY-KYASNVRSPHPAIQPLQAPQPAVHVQGQ-------EPLTASMLAAAP 550
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 551 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 605
Score = 136 (52.9 bits), Expect = 2.9e-06, P = 2.9e-06
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQ 282
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 661 (237.7 bits), Expect = 6.7e-65, P = 6.7e-65
Identities = 160/295 (54%), Positives = 186/295 (63%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSAR--PITGQSTMGPRGGGPMQAPGPA 172
P G QG P+ + +S PR + G ++R P T Q P + AP A
Sbjct: 443 PQG--FQGMPSAIR-QSGPRPALRHLAPTGNAPASRGLPTTAQRVGVPTAVQTL-APRAA 498
Query: 173 SVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQ 230
+AA R Y KY VR+P EPLT++MLAAA
Sbjct: 499 VAAAAPRAVAPY-KYASSVRSPHPAIQPLQAPQPAVHVQGQ-------EPLTASMLAAAP 550
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 551 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 605
Score = 138 (53.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 660 (237.4 bits), Expect = 8.5e-65, P = 8.5e-65
Identities = 160/295 (54%), Positives = 186/295 (63%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSAR--PITGQSTMGPRGGGPMQAPGPA 172
P G QG P+ + +S PR + G ++R P T Q P + AP A
Sbjct: 443 PQG--FQGMPSAIR-QSGPRPALRHLAPTGNAPASRGLPTTAQRVGVPTAVQNL-APRAA 498
Query: 173 SVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQ 230
+AA R Y KY VR+P EPLT++MLAAA
Sbjct: 499 VATAAPRAVAPY-KYASSVRSPHPAIQPLQAPQPAVHVQGQ-------EPLTASMLAAAP 550
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 551 PQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 605
Score = 138 (53.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 282
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 642 (231.1 bits), Expect = 6.9e-63, P = 6.9e-63
Identities = 162/307 (52%), Positives = 188/307 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPI-----TGQSTMG-----PRGGG 164
P G QG P+ + +S PR + G+ R G + G GG
Sbjct: 443 PQG--FQGMPSAIR-QSGPRPTLRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGV 499
Query: 165 P--MQ--APGPASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXX 218
P +Q AP A +AA R Y KY VR+P
Sbjct: 500 PTAVQNLAPRAAVAAAAPRAVAPY-KYASSVRSPHPAIQPLQAPQPAVHVQGQ------- 551
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ES
Sbjct: 552 EPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPES 611
Query: 279 LKSKVEE 285
L+SKV+E
Sbjct: 612 LRSKVDE 618
Score = 138 (53.6 bits), Expect = 1.8e-06, P = 1.8e-06
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 640 (230.4 bits), Expect = 1.1e-62, P = 1.1e-62
Identities = 156/297 (52%), Positives = 186/297 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M + GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMDGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRP 115
+A++R + +QP GYF+ +PQ Q +Y +Q+ Q+RP PRW +RP
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQAQNRAAYYPTSQLAQLRPSPRWTTQG-VRP 444
Query: 116 SGQTAQGFPNIP-QFR-SAPRASTGQTVIRGANMSARPITGQ----STMGPRGGGPMQAP 169
Q F N+P R SAPR T T+ R A+ R ++ Q TMGPR P A
Sbjct: 445 -----QHFQNMPGTMRPSAPRPQTFSTM-RPASQVPRMMSTQRVATQTMGPR---PSTAA 495
Query: 170 GPASVSAAGRQTGGYNKYP-VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAA 228
AS R Y P VRNP EPLT++MLAA
Sbjct: 496 AAASAPPV-RGVPQYKYAPSVRNP----QQHMNTQPQVTMQQPAVHVQGQEPLTASMLAA 550
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 551 APPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 607
Score = 135 (52.6 bits), Expect = 3.9e-06, P = 3.9e-06
Identities = 26/57 (45%), Positives = 39/57 (68%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+G+S+GFGFV F E+A +AV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 226 ENGKSRGFGFVSFERHEDAQRAVDEMNGKEMNGKLIYVGRAQKKVERQTELKRKFEQ 282
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 637 (229.3 bits), Expect = 2.3e-62, P = 2.3e-62
Identities = 155/303 (51%), Positives = 181/303 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 228 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 287
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 288 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGG--R 344
Query: 115 PSGQTAQGFPNIPQFRSAPR------ASTGQT-VIRGANMSARPITGQS----TMGPRGG 163
P G QG P+ + +S PR A TG RG + + + + M G
Sbjct: 345 PQG--FQGMPSAIR-QSGPRPTLRHLAPTGNAPASRGLPTTTQRVGSECPDRLAMDFGGA 401
Query: 164 GPMQAPGPASVSAAGRQTGGYNKYP-VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLT 222
G Q S + G T N P +PLT
Sbjct: 402 GAAQQGLTDSCQSGGVPTAVQNLAPRAAVAAAAPRAVAPYKYASSVRSPHPAIQPLQPLT 461
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SK
Sbjct: 462 ASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSK 521
Query: 283 VEE 285
V+E
Sbjct: 522 VDE 524
Score = 138 (53.6 bits), Expect = 1.4e-06, P = 1.4e-06
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 129 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 184
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 635 (228.6 bits), Expect = 3.8e-62, P = 3.8e-62
Identities = 161/308 (52%), Positives = 189/308 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPI-----TGQSTMG-----PRGGG 164
P G QG P+ + +S PR + G+ R G + G GG
Sbjct: 443 PQG--FQGMPSAIR-QSGPRPALRHLAPTGSECPDRLAMDFGGAGAAQQGLTDSCQSGGV 499
Query: 165 P--MQAPGP-ASVSAAG--RQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXX 217
P +Q P A+V+AA R Y KY +R+P
Sbjct: 500 PTAVQNLAPRAAVAAAAAPRAVAPY-KYASSIRSPHPAIQPLQAPQPAVHVQGQ------ 552
Query: 218 XEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
EPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE E
Sbjct: 553 -EPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPE 611
Query: 278 SLKSKVEE 285
SL+SKV+E
Sbjct: 612 SLRSKVDE 619
Score = 136 (52.9 bits), Expect = 3.0e-06, P = 3.0e-06
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEITGKVIFVGRAQKKVERQAELKRKFEQ 282
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 626 (225.4 bits), Expect = 3.4e-61, P = 3.4e-61
Identities = 153/297 (51%), Positives = 182/297 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA----- 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPH 445
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
P G P P F S R ++ Q V R + T TMGPR P A
Sbjct: 446 PFQNMPGAIRPAAPR-PPF-STMRPASSQ-VPRVMSTQRVANTSTQTMGPR---P--AAA 497
Query: 171 PASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAA 228
A+ + A R Y KY VRNP EPLT++MLA+
Sbjct: 498 AAAATPAVRTVPQY-KYAAGVRNP----QQHLNAQPQVTMQQPAVHVQGQEPLTASMLAS 552
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 553 APPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Score = 143 (55.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 153/297 (51%), Positives = 182/297 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA----- 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPH 445
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
P G P P F S R ++ Q V R + T TMGPR P A
Sbjct: 446 PFQNMPGAIRPAAPR-PPF-STMRPASSQ-VPRVMSTQRVANTSTQTMGPR---P--AAA 497
Query: 171 PASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAA 228
A+ + A R Y KY VRNP EPLT++MLA+
Sbjct: 498 AAAATPAVRTVPQY-KYAAGVRNP----QQHLNAQPQVTMQQPAVHVQGQEPLTASMLAS 552
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 553 APPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Score = 143 (55.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 153/297 (51%), Positives = 182/297 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA----- 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPH 445
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
P G P P F S R ++ Q V R + T TMGPR P A
Sbjct: 446 PFQNMPGAIRPAAPR-PPF-STMRPASSQ-VPRVMSTQRVANTSTQTMGPR---P--AAA 497
Query: 171 PASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAA 228
A+ + A R Y KY VRNP EPLT++MLA+
Sbjct: 498 AAAATPAVRTVPQY-KYAAGVRNP----QQHLNAQPQVTMQQPAVHVQGQEPLTASMLAS 552
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 553 APPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Score = 143 (55.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 153/297 (51%), Positives = 182/297 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 281 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 340
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA----- 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 341 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPH 400
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
P G P P F S R ++ Q V R + T TMGPR P A
Sbjct: 401 PFQNMPGAIRPAAPR-PPF-STMRPASSQ-VPRVMSTQRVANTSTQTMGPR---P--AAA 452
Query: 171 PASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAA 228
A+ + A R Y KY VRNP EPLT++MLA+
Sbjct: 453 AAAATPAVRTVPQY-KYAAGVRNP----QQHLNAQPQVTMQQPAVHVQGQEPLTASMLAS 507
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 508 APPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 564
Score = 143 (55.4 bits), Expect = 4.2e-07, P = 4.2e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 181 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 237
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 153/297 (51%), Positives = 182/297 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 294 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 353
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA----- 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 354 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPH 413
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
P G P P F S R ++ Q V R + T TMGPR P A
Sbjct: 414 PFQNMPGAIRPAAPR-PPF-STMRPASSQ-VPRVMSTQRVANTSTQTMGPR---P--AAA 465
Query: 171 PASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAA 228
A+ + A R Y KY VRNP EPLT++MLA+
Sbjct: 466 AAAATPAVRTVPQY-KYAAGVRNP----QQHLNAQPQVTMQQPAVHVQGQEPLTASMLAS 520
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 521 APPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 577
Score = 143 (55.4 bits), Expect = 4.3e-07, P = 4.3e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 194 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 250
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 153/297 (51%), Positives = 182/297 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA----- 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPH 445
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
P G P P F S R ++ Q V R + T TMGPR P A
Sbjct: 446 PFQNMPGAIRPAAPR-PPF-STMRPASSQ-VPRVMSTQRVANTSTQTMGPR---P--AAA 497
Query: 171 PASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAA 228
A+ + A R Y KY VRNP EPLT++MLA+
Sbjct: 498 AAAATPAVRTVPQY-KYAAGVRNP----QQHLNAQPQVTMQQPAVHVQGQEPLTASMLAS 552
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 553 APPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Score = 143 (55.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 153/297 (51%), Positives = 182/297 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA----- 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPH 445
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
P G P P F S R ++ Q V R + T TMGPR P A
Sbjct: 446 PFQNMPGAIRPAAPR-PPF-STMRPASSQ-VPRVMSTQRVANTSTQTMGPR---P--AAA 497
Query: 171 PASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAA 228
A+ + A R Y KY VRNP EPLT++MLA+
Sbjct: 498 AAAATPAVRTVPQY-KYAAGVRNP----QQHLNAQPQVTMQQPAVHVQGQEPLTASMLAS 552
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 553 APPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Score = 143 (55.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 625 (225.1 bits), Expect = 4.3e-61, P = 4.3e-61
Identities = 153/297 (51%), Positives = 182/297 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA----- 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPH 445
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
P G P P F S R ++ Q V R + T TMGPR P A
Sbjct: 446 PFQNMPGAIRPAAPR-PPF-STMRPASSQ-VPRVMSTQRVANTSTQTMGPR---P--AAA 497
Query: 171 PASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAA 228
A+ + A R Y KY VRNP EPLT++MLA+
Sbjct: 498 AAAATPAVRTVPQY-KYAAGVRNP----QQHLNAQPQVTMQQPAVHVQGQEPLTASMLAS 552
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 553 APPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Score = 143 (55.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 623 (224.4 bits), Expect = 7.1e-61, P = 7.1e-61
Identities = 152/297 (51%), Positives = 179/297 (60%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA----- 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPH 445
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
P G P P F S R ++ Q V R + T TMGPR A
Sbjct: 446 PFQNMPGAIRPAAPR-PPF-STMRPASSQ-VPRVMSTQRVANTSTQTMGPRPAAAATAAT 502
Query: 171 PASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAA 228
PA R Y KY VRNP EPLT++MLA+
Sbjct: 503 PAV-----RTVPQY-KYAAGVRNP----QQHLNAQPQVTMQQPAVHVQGQEPLTASMLAS 552
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 553 APPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 609
Score = 143 (55.4 bits), Expect = 4.7e-07, P = 4.7e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 622 (224.0 bits), Expect = 9.0e-61, P = 9.0e-61
Identities = 151/303 (49%), Positives = 180/303 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA----- 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 386 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPH 445
Query: 111 PQMRPSGQTAQGFPNIP--QFRSA----PRASTGQTVIRGANMSARPITGQSTMGPRGGG 164
P G P P R A PR + Q V G IT + + G
Sbjct: 446 PFQNMPGAIRPAAPRPPFSTMRPASSQVPRVMSTQRVEVGLQFE---ITSSANTSTQTMG 502
Query: 165 PMQAPGPASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLT 222
P A A+ + A R Y KY VRNP EPLT
Sbjct: 503 PRPAAAAAAATPAVRTVPQY-KYAAGVRNP----QQHLNAQPQVTMQQPAVHVQGQEPLT 557
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SK
Sbjct: 558 ASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSK 617
Query: 283 VEE 285
V+E
Sbjct: 618 VDE 620
Score = 143 (55.4 bits), Expect = 4.8e-07, P = 4.8e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 621 (223.7 bits), Expect = 1.2e-60, P = 1.2e-60
Identities = 153/298 (51%), Positives = 186/298 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQ-MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPS 116
+A++R+ + +QP + YF+ +P Q +Y P Q+ Q+RP PRW A
Sbjct: 386 MASVRVPNPVINPYQPPPSS-YFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTA------Q 438
Query: 117 GQTAQGFPNIP-QFR-SAPRASTGQTVIRGAN-----MSARPI--TGQSTMGPRGGGPMQ 167
G F N+P R +APR T T+ +N MSA+ + T TMGPR P
Sbjct: 439 GARPHPFQNMPGAIRPTAPRPPTFSTMRPASNQVPRVMSAQRVANTSTQTMGPR---PTT 495
Query: 168 APGPASVSAAGRQTGGYNKYPVRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLA 227
A A+ ++A R Y KY G EPLT++MLA
Sbjct: 496 AA--AAAASAVRAVPQY-KYAA---GVRNQQHLNTQPQVAMQQPAVHVQGQEPLTASMLA 549
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
AA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 550 AAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 607
Score = 138 (53.6 bits), Expect = 1.7e-06, P = 1.7e-06
Identities = 28/60 (46%), Positives = 41/60 (68%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M++D G+SKGFGFV F E+A KAV EMNG+ + K ++V AQ+K +R+ L ++ Q
Sbjct: 223 MTDDNGKSKGFGFVSFERHEDAQKAVDEMNGKDMNGKSMFVGRAQKKVERQTELKRKFEQ 282
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 608 (219.1 bits), Expect = 2.7e-59, P = 2.7e-59
Identities = 150/296 (50%), Positives = 181/296 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 385
Query: 61 IANMRMQQ-MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA-----P 111
+A++R+ + +QP + YF+ +P Q +Y P Q+ Q+RP PRW A P
Sbjct: 386 MASVRVPNPVINPYQPPPSS-YFMAAIPPAQNRAAYYPPGQIAQLRPSPRWTAQGARPHP 444
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGP 171
+G P P F S R ++ + A A T TMGPR P A
Sbjct: 445 FQNMAGAIRPSAPRPPTF-STMRPTSQVPRVMSAQRVAN--TSTQTMGPR---PTTAA-- 496
Query: 172 ASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAA 229
A+ ++A R Y KY VRN EPLT++MLAAA
Sbjct: 497 AAATSAVRTVPQY-KYAAGVRN----TQQHLNTQPQVAMQQPAVHVQGQEPLTASMLAAA 551
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 552 PPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 607
Score = 133 (51.9 bits), Expect = 6.5e-06, P = 6.5e-06
Identities = 26/60 (43%), Positives = 41/60 (68%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M++D G+S+GFGFV F E+A KAV +MNG+ + K ++V AQ+K +R+ L ++ Q
Sbjct: 223 MTDDHGKSRGFGFVSFERHEDAQKAVDDMNGKDLNGKAIFVGRAQKKVERQTELKRKFEQ 282
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 151/298 (50%), Positives = 177/298 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 262 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 321
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQI-RPQPRWAAA---- 110
+A++R + +QP GYF+ +PQ Q +Y Q+ Q+ RP PRW A
Sbjct: 322 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTAQGARP 381
Query: 111 -PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAP 169
P G P P F S R ++ Q V R + T TMGPR A
Sbjct: 382 HPFQNMPGAIRPAAPR-PPF-STMRPASSQ-VPRVMSTQRVANTSTQTMGPRPAAAATAA 438
Query: 170 GPASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLA 227
PA R Y KY VRNP EPLT++MLA
Sbjct: 439 TPAV-----RTVPQY-KYAAGVRNP----QQHLNTQPQVAMQQPAVHVQGQEPLTASMLA 488
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 489 SAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 546
Score = 143 (55.4 bits), Expect = 4.0e-07, P = 4.0e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 162 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 218
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 605 (218.0 bits), Expect = 5.7e-59, P = 5.7e-59
Identities = 151/298 (50%), Positives = 177/298 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 158 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 217
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQI-RPQPRWAAA---- 110
+A++R + +QP GYF+ +PQ Q +Y Q+ Q+ RP PRW A
Sbjct: 218 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPTNQLAQLARPSPRWTAQGARP 277
Query: 111 -PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAP 169
P G P P F S R ++ Q V R + T TMGPR A
Sbjct: 278 HPFQNMPGAIRPAAPR-PPF-STMRPASSQ-VPRVMSTQRVANTSTQTMGPRPAAAATAA 334
Query: 170 GPASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLA 227
PA R Y KY VRNP EPLT++MLA
Sbjct: 335 TPAV-----RTVPQY-KYAAGVRNP----QQHLNTQPQVAMQQPAVHVQGQEPLTASMLA 384
Query: 228 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 385 SAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 442
Score = 143 (55.4 bits), Expect = 2.9e-07, P = 2.9e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 58 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 114
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 593 (213.8 bits), Expect = 1.1e-57, P = 1.1e-57
Identities = 150/296 (50%), Positives = 182/296 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+A+L ++YMQR
Sbjct: 326 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAYLTNEYMQR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA---P--- 111
+A++R Q P GYF+ +PQ Q +Y P+Q+ ++RP PRW A P
Sbjct: 386 MASVRAVP-NQRAPPS---GYFMTAVPQTQNHAAYYPPSQIARLRPSPRWTAQGARPHPF 441
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGP 171
Q +PS G P +P F S R ++ Q V R + T T+GPR P A
Sbjct: 442 QNKPSA-IRPGAPRVP-F-STMRPASSQ-VPRVMSTQRVANTSTQTVGPR---PAAAAAA 494
Query: 172 ASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAA 229
A+ A R Y KY VRNP E LT++ LA+A
Sbjct: 495 AATPAV-RTVPRY-KYAAGVRNP----QQHRNAQPQVTMQQLAVHVQGQETLTASRLASA 548
Query: 230 QPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLYMLE ESL+SKV+E
Sbjct: 549 PPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDE 604
Score = 141 (54.7 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 583 (210.3 bits), Expect = 1.2e-56, P = 1.2e-56
Identities = 143/294 (48%), Positives = 177/294 (60%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQPQR--FYGPTQMTQIRPQPRWAAAPQMRP 115
+A MR +G QP + YF+PT+PQP FY P + +RP P+WA+ Q RP
Sbjct: 386 LATMRAMPGPLLGSFQQPAN---YFLPTMPQPSNRAFYSPNPVAPVRPAPQWASH-QSRP 441
Query: 116 SGQTAQGFPNIPQFRSAP--RASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
Q P P R+ P R + + ++ A+ + QS G A A
Sbjct: 442 P----QYQPPAPLMRAVPPRRMHSNISTMKQASTQVPRVPLQSQR-VANIGTQTAGARAQ 496
Query: 174 VSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQP 231
V+A+ + + KY VRN EPLT+++LAAA
Sbjct: 497 VNASIMRAMPHYKYSCGVRN----VQPIGSSAHLQQVLEPAVLMQGQEPLTASLLAAAPL 552
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
QEQKQ+LGER++PLI M+P LAGKITGMLLEIDN+ELL+MLE ESL SKVEE
Sbjct: 553 QEQKQILGERIYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEE 606
Score = 141 (54.7 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 27/59 (45%), Positives = 40/59 (67%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M GRS+GFGFV + + EEA KAVTEMNG+ + + +YV AQ++ +R+ L ++ Q
Sbjct: 224 MDNSGRSRGFGFVNYGNHEEAQKAVTEMNGKEVNGRMVYVGRAQKRIERQGELKRKFEQ 282
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 582 (209.9 bits), Expect = 1.6e-56, P = 1.6e-56
Identities = 142/294 (48%), Positives = 177/294 (60%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP--QRFYGPTQMTQIRPQPRWAAAPQMRP 115
+A MR +G QP + YF+ +PQP + FY P + +RP P+WA+ Q RP
Sbjct: 386 LATMRAMPGPLLGSFQQPAN---YFLSAMPQPPNRTFYSPNPVAPVRPAPQWASH-QSRP 441
Query: 116 SGQTAQGFPNIPQFRSA-PRA-STGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
Q P P R+ PR S+ + ++ A+ P Q + G A A
Sbjct: 442 P----QYQPPTPLMRAVQPRRMSSNISTMKQASTQV-PRVAQHSQRVANIGTQTAGARAQ 496
Query: 174 VSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQP 231
V+ + +T + KY VRN EPLT+++LA A P
Sbjct: 497 VNPSMMRTMPHYKYSCGVRN----VQPIVSSTHLQQVMEPAVLMQGQEPLTASLLAGAPP 552
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
QEQKQMLGER++P+I M+P LAGKITGMLLEIDN+ELL+MLE ESL SKVEE
Sbjct: 553 QEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEE 606
Score = 141 (54.7 bits), Expect = 7.7e-07, P = 7.7e-07
Identities = 26/59 (44%), Positives = 42/59 (71%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M + GRS+GFGFV + + EEA KAV+EMNG+ + + +YV AQ++ +R++ L ++ Q
Sbjct: 224 MDDSGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQSELKRKFEQ 282
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 580 (209.2 bits), Expect = 2.5e-56, P = 2.5e-56
Identities = 142/294 (48%), Positives = 175/294 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQP--QRFYGPTQMTQIRPQPRWAAAPQMRP 115
+A MR +G QP + YF+P +PQP + FY P + +R P+W + Q RP
Sbjct: 386 LATMRAMPGPLLGSFQQPAN---YFLPAMPQPPNRTFYSPNPVAPVRQAPQWTSH-QSRP 441
Query: 116 SGQTAQGFPNIPQFRSAP--RASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
Q P P R+ P R S+ + ++ A+ P + G A A
Sbjct: 442 P----QYQPPAPLMRAVPPRRMSSNISTMKQASTQV-PRVAPHSQRVANIGTQTAGARAQ 496
Query: 174 VSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQP 231
V+ + +T + KY VRN EPLT++ LA+A P
Sbjct: 497 VNPSIMRTMPHYKYSCAVRN----VQPIGTNTHLQQVMEPAVLMQGQEPLTASSLASAPP 552
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
QEQKQMLGERL+PLI M+P LAGKITGMLLEIDN+ELL+MLE ESL SKVEE
Sbjct: 553 QEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLHMLESPESLHSKVEE 606
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 26/59 (44%), Positives = 41/59 (69%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M + GRS+GFGFV + + EEA KAV+EMNG+ + + +YV AQ++ +R+ L ++ Q
Sbjct: 224 MDDTGRSRGFGFVNYGNHEEAQKAVSEMNGKEVNGRMIYVGRAQKRIERQGELKRKFEQ 282
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 572 (206.4 bits), Expect = 1.8e-55, P = 1.8e-55
Identities = 143/295 (48%), Positives = 175/295 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR +G FQP GYF+P +PQPQ FY P+ + +RP RW+A P
Sbjct: 386 LATMRALPGPFLGS-FQPPP--GYFLPPIPQPQTRAAFYSPSPVVPVRPATRWSAQPTRP 442
Query: 115 PSGQTAQGFPNIPQFRSA--PRASTGQ-TVIRGANMSARPITGQST-MGPRGGGPMQAPG 170
P A P R+A PR + +R A+ + Q+ + G + A
Sbjct: 443 PPYPAAT-----PILRAAVQPRRLLSNISTMRQASTQVPRVPPQAQRVANIGTQTISARV 497
Query: 171 PASVSAAGRQTGGYNKYPVRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQ 230
P+S + G Y+ VRN EPLT++MLAAA
Sbjct: 498 PSSPTLRGAPQYKYS-LAVRN---IQPMGSVPPGAQQVGEPAVHIQGQEPLTASMLAAAP 553
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
PQEQKQM+GERL+PLI M+ LAGKITGMLLEIDN+ELL +LE ESL SK+EE
Sbjct: 554 PQEQKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLLLLESPESLHSKIEE 608
Score = 139 (54.0 bits), Expect = 1.3e-06, P = 1.3e-06
Identities = 28/59 (47%), Positives = 39/59 (66%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M GRSKGFGFV F EEA KAV +MNG+ I + +YV AQ++ +R++ L ++ Q
Sbjct: 224 MDHTGRSKGFGFVNFEKHEEAQKAVADMNGKEINGRMVYVGRAQKRLERQSELKRKFEQ 282
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 555 (200.4 bits), Expect = 1.1e-53, P = 1.1e-53
Identities = 144/295 (48%), Positives = 170/295 (57%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG I+P PRW A P R
Sbjct: 386 LSTMRALGGPILGSFQQPAS---YFLPAVPQPPAQAPYYGSGP--PIQPAPRWTAQPP-R 439
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQ-STMGPRGGGPMQAPGPAS 173
PS +P P AS V+R A MS RP+T S+ P P
Sbjct: 440 PSS----AYP--------PGAS----VVRPAAMSRRPLTPVGSSRQVSTHVPHLVPHTQR 483
Query: 174 VSAAGRQTGGYNKYPVRNPGTXXXXXXXXXXXXXXXXXXXXXXXX---EPLTSTMLAAAQ 230
V+ G QT G + P EPLT++MLAAA
Sbjct: 484 VANIGTQTTGPSMTGCSTPSRPLLTHTYSTPAHRTDRVQEPAVHVPGQEPLTASMLAAAP 543
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
EQKQM+GERLFPL+ ++ LAGKITGMLLEIDN+ELL MLE ESL +KVEE
Sbjct: 544 LHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLLMLESPESLNAKVEE 598
Score = 130 (50.8 bits), Expect = 1.4e-05, P = 1.4e-05
Identities = 28/60 (46%), Positives = 38/60 (63%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G S+GFGFV F EEA KAV MNGR + + LYV AQ++ +R+ L ++ Q
Sbjct: 223 MRDDSGHSRGFGFVNFEKHEEAQKAVVNMNGREVSGRLLYVGRAQKRVERQNELKRRFEQ 282
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 349 (127.9 bits), Expect = 1.8e-53, Sum P(2) = 1.8e-53
Identities = 89/185 (48%), Positives = 110/185 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QY+QR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYIQR 385
Query: 61 IANMRM---QQMGQLFQPGSTGGYFVPTLPQPQR---FY--GPTQMTQIRPQPRWAAAPQ 112
++ MR +G L QP S YF+P +PQP +Y GP ++P PRW A P
Sbjct: 386 LSTMRALGSPLLGSLQQPTS---YFLPAVPQPPAQSPYYASGPP----VQPPPRWTAQPP 438
Query: 113 MRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPA 172
RPS + + + S P +S+ Q I RP+ T G G Q GP
Sbjct: 439 -RPSSASVVRPAAVSRRPSVPISSSRQVSIH----VPRPVP--QTQGVANIGT-QTTGPG 490
Query: 173 SVSAA 177
+ A
Sbjct: 491 VMGCA 495
Score = 233 (87.1 bits), Expect = 1.8e-53, Sum P(2) = 1.8e-53
Identities = 48/67 (71%), Positives = 57/67 (85%)
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT+++LAAA EQKQM+GERL+PLI M+ +LAGKITGMLLEIDN+ELL MLE ES
Sbjct: 527 EPLTASVLAAAPLHEQKQMIGERLYPLIYNMHTQLAGKITGMLLEIDNSELLLMLESPES 586
Query: 279 LKSKVEE 285
L +KVEE
Sbjct: 587 LSAKVEE 593
Score = 131 (51.2 bits), Expect = 6.5e-30, Sum P(2) = 6.5e-30
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G S+GFGFV F E+A KAVT+MNG+ + + LYV AQ++ +R+ L ++ Q
Sbjct: 223 MRDDSGHSRGFGFVNFEKHEDAQKAVTDMNGKEVSGRLLYVGRAQKRVERQNELKRRFEQ 282
Score = 98 (39.6 bits), Expect = 1.8e-26, Sum P(2) = 1.8e-26
Identities = 18/57 (31%), Positives = 35/57 (61%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+D S+GFGFV F + E A A+ MNG ++ + ++V + + +R+A L ++ ++
Sbjct: 133 DDHGSRGFGFVHFETHEAAQNAIRTMNGMLLNDRKVFVGHFKSRREREAELGARALE 189
Score = 77 (32.2 bits), Expect = 2.9e-24, Sum P(2) = 2.9e-24
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS G+ ++ F P +A +A+ MN +I +P+ + +QR RK+ + + +++ +
Sbjct: 50 RSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNVFIKNL 106
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 549 (198.3 bits), Expect = 4.9e-53, P = 4.9e-53
Identities = 143/299 (47%), Positives = 175/299 (58%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRMQQ---MGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
++ MR +G QP S YF+P +PQP +YG +T +P PRW + P R
Sbjct: 386 LSTMRTLSNPLLGSFQQPSS---YFLPAMPQPPAQAAYYGCGPVTPTQPAPRWTSQPP-R 441
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQT---VIRGANMSARPIT-GQSTMGPRGGGPMQAPG 170
PS + P +P+ A +S Q V R + R G T GP G G PG
Sbjct: 442 PSCASMVRPPVVPRRPPAHISSVRQASTQVPRTVPHTQRVANIGTQTTGPSGVGCC-TPG 500
Query: 171 ----PASVSAAGRQTGGYNKYPVRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTML 226
P S+A T + V PG EPLT++ML
Sbjct: 501 RPLLPCKCSSAAHSTYRVQEPAVHIPGQ------------------------EPLTASML 536
Query: 227 AAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
AAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ESL +K++E
Sbjct: 537 AAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDE 595
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 544 (196.6 bits), Expect = 1.7e-52, P = 1.7e-52
Identities = 141/295 (47%), Positives = 177/295 (60%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M++ G S+GFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+RKA L +QY+QR
Sbjct: 326 MTDGGHSRGFGFVCFSSPEEATKAVTEMNGRIVSTKPLYVALAQRKEERKAILTNQYIQR 385
Query: 61 IANMRM---QQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA-AAPQMRPS 116
+A++R + +Q GS GY++ ++PQ + FY + +RP PRWA AP R
Sbjct: 386 LASIRAIPGPAIPTTYQQGS--GYYMTSVPQVRSFYNA--VPNLRPAPRWAFQAP--RTQ 439
Query: 117 GQTAQGFPNIPQF--RSAPRA-STGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
G FP QF ++ PR ST + +R A+ I M G Q G +
Sbjct: 440 GP----FP--AQFVRQAVPRRPSTTISTVRQASTQVPHINNTQRMANIG---TQTAGGRA 490
Query: 174 VSAAGRQTGGYNKYP--VRN-PGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQ 230
A R Y KY VRN EPLT++MLAAA
Sbjct: 491 AGTAVRGVSQY-KYSAGVRNVQQVINAPAPVVHQVVQNTEPAVHMKGQEPLTASMLAAAP 549
Query: 231 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+EQKQ+LGERL+PLIQ ++P LAGKITGMLLEIDN+ELL+MLE ESL +KVEE
Sbjct: 550 LKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNSELLHMLESPESLHAKVEE 604
Score = 133 (51.9 bits), Expect = 6.3e-06, P = 6.3e-06
Identities = 29/66 (43%), Positives = 44/66 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E GRS+GFGFV F + +A +AVTEMNG+ + + LYV AQ++ +R+ L ++ Q I
Sbjct: 226 ERGRSRGFGFVNFVNHGDARRAVTEMNGKELNGRVLYVGRAQKRLERQGELKRKFEQ-IK 284
Query: 63 NMRMQQ 68
R+Q+
Sbjct: 285 QERIQR 290
>UNIPROTKB|F1M0P4 [details] [associations]
symbol:F1M0P4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570 GO:GO:2000623
IPI:IPI00778598 ProteinModelPortal:F1M0P4
Ensembl:ENSRNOT00000035783 OMA:KHKFEQM Uniprot:F1M0P4
Length = 338
Score = 324 (119.1 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 79/182 (43%), Positives = 99/182 (54%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E G SK FGF+CFSS EEA KAV EMNG+I+ +KPLYVALAQ KE+ + HL +QYM R
Sbjct: 59 MMEGGHSKRFGFICFSSHEEAFKAVMEMNGKIVATKPLYVALAQHKEECQTHLTNQYMHR 118
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA----- 110
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP P W A
Sbjct: 119 MASVRTVPNPVINPYQPAPPSGYFMAAIPQTQNHAAYYPPSQIAQLRPSPCWIAQGARPH 178
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
P G P P F PR Q V AN S + TMGPR + A
Sbjct: 179 PFQNMPGAICPAAPR-PPFSMVPRVMPTQHV---ANTSTQ------TMGPRSAAVVTAAT 228
Query: 171 PA 172
PA
Sbjct: 229 PA 230
Score = 232 (86.7 bits), Expect = 6.1e-52, Sum P(2) = 6.1e-52
Identities = 49/67 (73%), Positives = 57/67 (85%)
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
E LT++MLA+A PQEQKQMLGE LFPLIQ ++P AGKITGMLLEIDN+ELL+ML ES
Sbjct: 245 EHLTASMLASAPPQEQKQMLGEWLFPLIQVLHPSPAGKITGMLLEIDNSELLHMLASPES 304
Query: 279 LKSKVEE 285
L SKV+E
Sbjct: 305 LHSKVDE 311
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 526 (190.2 bits), Expect = 1.3e-50, P = 1.3e-50
Identities = 137/297 (46%), Positives = 172/297 (57%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E GRSKGFGFVCFSSPEEATKAV+EMNGRI+ +KPLYVALAQRKE+R+AHL +QY+QR
Sbjct: 326 MTEGGRSKGFGFVCFSSPEEATKAVSEMNGRIVATKPLYVALAQRKEERQAHLTNQYIQR 385
Query: 61 IANMRM--QQMGQLFQPGSTGGYFVPTLPQPQRFYG--PTQMTQIRPQPRWAAAPQMRPS 116
+A++R + +QP +G Y V +PQ Q P+Q+ Q P RW A
Sbjct: 386 MASVRSGPNSLINAYQPAPSG-YSVAAVPQTQNCAPCCPSQIVQPSPSTRWTA------Q 438
Query: 117 GQTAQGFPNIP--QFRSAPRASTGQTVIRGAN------MSARPITGQSTMGPRGGGPMQA 168
G FPN+ +AP++S T +R ++ M+A+ IT S G P A
Sbjct: 439 GARPHPFPNVSGASHPAAPKSSF--TTVRPSSSHVPQVMAAQRITNTSAQ-TTGQRPALA 495
Query: 169 PGPASVSAAGRQTGGYNKYPVRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAA 228
PA+ R Y KY T EP T++ L
Sbjct: 496 SSPATTPV--RSIPQY-KY-----ATGVRNSQQHLNAQLVQQPSVCIQGQEPWTASTLGT 547
Query: 229 AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+E L+ML+ ESL S+ +E
Sbjct: 548 A-PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEPLHMLDSPESLCSRAQE 603
Score = 141 (54.7 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 29/57 (50%), Positives = 37/57 (64%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K DR L ++ Q
Sbjct: 226 EGGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKHIYVGPAQKKVDRHIELKRKFEQ 282
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 138/294 (46%), Positives = 160/294 (54%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL++QYMQR+A
Sbjct: 338 EGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLSNQYMQRMA 397
Query: 63 NMR-MQQMG-QLFQPGS-TGGYFVP-TLPQPQR--FYGPTQMTQIRPQPRWAAAPQMRPS 116
+ + G FQP GYF+ T P R +Y P Q TQ P R +A
Sbjct: 398 STSAVPNPGINPFQPAQGLSGYFMTATAPTQNRGTYYAPNQTTQQGPSARGSA------Q 451
Query: 117 GQTAQGFPN----IPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPA 172
G A F N I + P ST A T MGP A PA
Sbjct: 452 GTRAHPFQNMSSAIHPSNTMPSFSTSGPTSSQAVRHRTASTSTQMMGPHPAAASTAAAPA 511
Query: 173 SVSAAG-RQTGGYNKYPVRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQP 231
+ + + T G VRNP E LT +MLA+A P
Sbjct: 512 ARTVTQYKYTAG-----VRNPPQHLNTQPQVTTQRSAVSAQGK----ESLTVSMLASAPP 562
Query: 232 QEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
Q QKQMLGE LF LIQ M+P LAGKITGMLLEIDN EL +MLE E L +KV+E
Sbjct: 563 QAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLELRHMLESPECLHTKVDE 616
Score = 142 (55.0 bits), Expect = 6.2e-07, P = 6.2e-07
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 226 ESGKSKGFGFVSFERHEDARKAVDEMNGKDLNGKQIYVGRAQKKVERQTELKHKFGQ 282
Score = 117 (46.2 bits), Expect = 0.00044, P = 0.00044
Identities = 23/69 (33%), Positives = 44/69 (63%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+G SKG+GFV F + EEA +A+ +MNG + + ++V + + DR+A L ++ +
Sbjct: 134 ENG-SKGYGFVHFETQEEAERAIEKMNGMFLNDRKVFVGRFKSRRDRQAELGAR-AKEFT 191
Query: 63 NMRMQQMGQ 71
N+ ++ +G+
Sbjct: 192 NVYIKNLGE 200
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 515 (186.3 bits), Expect = 2.0e-49, P = 2.0e-49
Identities = 140/303 (46%), Positives = 169/303 (55%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E+GRSKGFGFVCF PEEAT AVT+MN ++IG+KPLYVALAQRKEDR+A LASQYMQR
Sbjct: 376 VDENGRSKGFGFVCFEKPEEATAAVTDMNSKMIGAKPLYVALAQRKEDRRAQLASQYMQR 435
Query: 61 IANMRMQQ-------MGQLFQPGSTGGYFVPTLPQPQRFYG-PTQMTQIRPQP-RWAAAP 111
+A +RM Q M QL+QPG G YFVP Q G Q QIR P +
Sbjct: 436 LATLRMGQQASGVPAMTQLYQPGQQG-YFVPNPMNAQGRPGFQPQSAQIRGPPGQRVFQN 494
Query: 112 QM---RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGP---RGGGP 165
QM P Q Q +P Q R R + G+ M+ RP GP GG P
Sbjct: 495 QMFMQYPFNQR-QVYPQ-QQGRPPMRTNDGRPQY---GMAPRPAGAPRVGGPGVQMGGAP 549
Query: 166 MQAPGPASVSAAGRQTGGYNKYP-VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTST 224
++ GPA A Q Y P + P E LTS
Sbjct: 550 IRQQGPAPRGAP--QKPFYQGPPRQQQPQQHSQQPAQQPGQQGQGQSGIVIHGQETLTSH 607
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYP--ELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
MLA A PQEQKQ+LGER++ LI++M+P + AGKITGM+LEIDNAEL+ ML+ E +SK
Sbjct: 608 MLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDAELFRSK 667
Query: 283 VEE 285
VEE
Sbjct: 668 VEE 670
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 319 (117.4 bits), Expect = 3.5e-49, Sum P(2) = 3.5e-49
Identities = 83/175 (47%), Positives = 99/175 (56%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+GRSKGFGFVCF PEEAT AVTEMN +++ SKPLYVA+AQRKEDR+A LASQYMQR+A
Sbjct: 352 ENGRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQRKEDRRAQLASQYMQRLA 411
Query: 63 NMRMQQM---GQLFQPGSTG-GYFVPTLPQPQR-FYGPTQMTQIRPQPRWAAAPQMRPSG 117
+MRM ++ P G GY+V Q QR F G QM +RP RW Q
Sbjct: 412 SMRMHGNVPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQM--VRPGGRWGMQNQYPVQN 469
Query: 118 Q--TAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
Q AQG P + Q R R Q RG + Q + +G Q PG
Sbjct: 470 QYMMAQG-PGVYQNRMG-RPQNQQGGPRGPPQQYNQVA-QGGVRMQGPPRTQNPG 521
Score = 226 (84.6 bits), Expect = 3.5e-49, Sum P(2) = 3.5e-49
Identities = 45/69 (65%), Positives = 59/69 (85%)
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYP--ELAGKITGMLLEIDNAELLYMLEHN 276
EPLTS MLAAA PQEQKQ+LGER++ LI+++YP + AGKITGM+LEIDN+EL+ ML+ +
Sbjct: 567 EPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDS 626
Query: 277 ESLKSKVEE 285
E +SKV+E
Sbjct: 627 ELFRSKVDE 635
Score = 126 (49.4 bits), Expect = 6.3e-31, Sum P(3) = 6.3e-31
Identities = 31/70 (44%), Positives = 45/70 (64%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRII-GSK-PLYVALAQRKEDRKAHLASQYM 58
M+ +G+SKGFGFV F++PEEA AV ++ I G+ L+V AQ+K +R A L ++
Sbjct: 245 MTVEGKSKGFGFVAFANPEEAETAVQALHDSTIEGTDLKLHVCRAQKKSERHAELKKKHE 304
Query: 59 QRIANMRMQQ 68
Q A RMQ+
Sbjct: 305 QHKAE-RMQK 313
Score = 107 (42.7 bits), Expect = 5.9e-29, Sum P(3) = 5.9e-29
Identities = 23/70 (32%), Positives = 37/70 (52%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ EDG SKG+GFV F + E A A+ ++NG ++ K ++V Q + R L Q
Sbjct: 153 IDEDGFSKGYGFVHFETEEAAQNAIQKVNGMLLAGKKVFVGKFQPRAQRNRELGETAKQ- 211
Query: 61 IANMRMQQMG 70
N+ ++ G
Sbjct: 212 FTNVYVKNFG 221
Score = 67 (28.6 bits), Expect = 8.0e-25, Sum P(3) = 8.0e-25
Identities = 13/39 (33%), Positives = 22/39 (56%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
S G+ +V F P +A +A+ MN + KP+ + +QR
Sbjct: 72 SLGYAYVNFQQPADAERAMDTMNFEALHGKPMRIMWSQR 110
Score = 47 (21.6 bits), Expect = 8.2e-06, Sum P(2) = 8.2e-06
Identities = 28/96 (29%), Positives = 35/96 (36%)
Query: 56 QYMQRI-ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQM-TQIRPQPRWAAAPQM 113
QY Q +RMQ + PG VP PQ Q+ P + PQP A Q
Sbjct: 500 QYNQVAQGGVRMQGPPRTQNPG-VQQQNVPRPPQQQQQQRPAPTGPKAPPQPYQAY--QQ 556
Query: 114 RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSA 149
RP G G + A A Q + G + A
Sbjct: 557 RPQGIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYA 592
Score = 42 (19.8 bits), Expect = 6.3e-31, Sum P(3) = 6.3e-31
Identities = 32/121 (26%), Positives = 45/121 (37%)
Query: 76 GSTGGYFVPTLPQPQRFYGP-TQMTQ--IRPQPRWAAAPQMRPSGQTAQGFPNIPQFRSA 132
G + G+ +P+ T+M + +P + A Q R + AQ Q R A
Sbjct: 354 GRSKGFGFVCFEKPEEATSAVTEMNSKMVCSKPLYVAIAQ-RKEDRRAQLASQYMQ-RLA 411
Query: 133 PRASTGQTVIRGANM--SARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVR 190
G + GA M +P G P A G V GR G N+YPV+
Sbjct: 412 SMRMHGN--VPGAAMYNPTQPGPGYYVANPMQQQRNFAGGQQMVRPGGRW-GMQNQYPVQ 468
Query: 191 N 191
N
Sbjct: 469 N 469
Score = 38 (18.4 bits), Expect = 2.1e-24, Sum P(3) = 2.1e-24
Identities = 10/23 (43%), Positives = 14/23 (60%)
Query: 104 QPRWAAAPQMRPSGQTAQGFPNI 126
QPR A + R G+TA+ F N+
Sbjct: 196 QPR---AQRNRELGETAKQFTNV 215
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 378 (138.1 bits), Expect = 1.8e-47, Sum P(2) = 1.8e-47
Identities = 106/241 (43%), Positives = 130/241 (53%)
Query: 57 YMQRIANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAA- 110
YMQR+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 342 YMQRMASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTAQG 401
Query: 111 ----PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPM 166
P G P P F S R ++ Q V R + T TMGPR P
Sbjct: 402 ARPHPFQNMPGAIRPAAPR-PPF-STMRPASSQ-VPRVMSTQRVANTSTQTMGPR---P- 454
Query: 167 QAPGPASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTST 224
A A+ + A R Y KY VRNP EPLT++
Sbjct: 455 -AAAAAAATPAVRTVPQY-KYAAGVRNP----QQHLNAQPQVTMQQPAVHVQGQEPLTAS 508
Query: 225 MLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVE 284
MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+
Sbjct: 509 MLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVD 568
Query: 285 E 285
E
Sbjct: 569 E 569
Score = 143 (55.4 bits), Expect = 1.8e-47, Sum P(2) = 1.8e-47
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 282
Score = 108 (43.1 bits), Expect = 8.5e-44, Sum P(2) = 8.5e-44
Identities = 21/69 (30%), Positives = 44/69 (63%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+G SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 134 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFT 191
Query: 63 NMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 NVYIKNFGE 200
Score = 79 (32.9 bits), Expect = 9.4e-41, Sum P(2) = 9.4e-41
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS G+ +V F P +A +A+ MN +I KP+ + +QR RK+ + + +++ +
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQRDPSLRKSGVGNIFIKNL 106
>UNIPROTKB|H0YEU6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000527718 Uniprot:H0YEU6
Length = 249
Score = 422 (153.6 bits), Expect = 1.4e-39, P = 1.4e-39
Identities = 107/201 (53%), Positives = 120/201 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 53 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 112
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW Q
Sbjct: 113 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGFQGM 171
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQT-VIRGANMSARPITGQSTMGPRGGGPMQAPGPAS 173
PS G P P R A TG RG P T Q P + AP A
Sbjct: 172 PSAIRQSG-PR-PTLRHL--APTGNAPASRGL-----PTTTQRVGVPTAVQNL-APRAAV 221
Query: 174 VSAAGRQTGGYNKYP--VRNP 192
+AA R Y KY VR+P
Sbjct: 222 AAAAPRAVAPY-KYASSVRSP 241
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 417 (151.9 bits), Expect = 4.8e-39, P = 4.8e-39
Identities = 93/163 (57%), Positives = 109/163 (66%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 81 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 140
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 141 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGG--R 197
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSAR--PITGQ 155
P G QG P+ + +S PR + G ++R P T Q
Sbjct: 198 PQG--FQGMPSALR-QSGPRPALRHLAPTGNAPASRGLPTTAQ 237
Score = 282 (104.3 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 85/205 (41%), Positives = 106/205 (51%)
Query: 88 QPQRFYG-PTQMTQIRPQPRWAAAPQMRPSGQT--AQGFPNIPQFRSAPRASTGQTVIRG 144
+PQ F G P+ + Q P+P A + P+G ++G P Q + G
Sbjct: 197 RPQGFQGMPSALRQSGPRP---ALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFGG 253
Query: 145 ANMSARPITGQSTMG--PRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTXXXXXX 200
A + + +T G P P AP +AA R Y KY VR+P
Sbjct: 254 AGAAQQGLTDSCQSGGVPTAV-PNLAPRATVAAAAPRAVAPY-KYASNVRSPHPAIQPLQ 311
Query: 201 XXXXXXXXXXXXXXXXXXEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGM 260
EPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGM
Sbjct: 312 APQPAVHVQGQ-------EPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGM 364
Query: 261 LLEIDNAELLYMLEHNESLKSKVEE 285
LLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 365 LLEIDNSELLHMLESPESLRSKVDE 389
Score = 80 (33.2 bits), Expect = 1.4e-31, Sum P(2) = 1.4e-31
Identities = 16/37 (43%), Positives = 25/37 (67%)
Query: 23 KAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 1 KAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQ 37
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 417 (151.9 bits), Expect = 7.0e-39, P = 7.0e-39
Identities = 94/174 (54%), Positives = 111/174 (63%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRAST---GQTVIRGANMSARPITGQSTMGPRGGGP 165
P G QG P+ + +S PR + T + A + P + PR P
Sbjct: 443 PQG--FQGMPSAIR-QSGPRPTLRHLAPTGVPTAVQNLAPRAAVAAAAPRAVAP 493
Score = 266 (98.7 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 82/187 (43%), Positives = 98/187 (52%)
Query: 105 PRWAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSA-RPITGQSTMGPRG- 162
P+ P Q AQ PN P+++ R Q + S RP + P G
Sbjct: 414 PQAQGRPPYYTPNQLAQMRPN-PRWQQGGRPQGFQGMPSAIRQSGPRPTLRH--LAPTGV 470
Query: 163 GGPMQ--APGPASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXX 218
+Q AP A +AA R Y KY VR+P
Sbjct: 471 PTAVQNLAPRAAVAAAAPRAVAPY-KYASSVRSPHPAIQPLQAPQPAVHVQGQ------- 522
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ES
Sbjct: 523 EPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPES 582
Query: 279 LKSKVEE 285
L+SKV+E
Sbjct: 583 LRSKVDE 589
Score = 138 (53.6 bits), Expect = 3.1e-34, Sum P(2) = 3.1e-34
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 227 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 282
Score = 105 (42.0 bits), Expect = 9.1e-31, Sum P(2) = 9.1e-31
Identities = 21/69 (30%), Positives = 43/69 (62%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+G SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 134 ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFT 191
Query: 63 NMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 NVYIKNFGE 200
Score = 81 (33.6 bits), Expect = 3.0e-28, Sum P(2) = 3.0e-28
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS G+ +V F P +A +A+ MN +I KP+ + +QR RK+ + + +++ +
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNL 106
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 417 (151.9 bits), Expect = 1.3e-38, P = 1.3e-38
Identities = 93/163 (57%), Positives = 109/163 (66%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 326 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 385
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 386 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGG--R 442
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSAR--PITGQ 155
P G QG P+ + +S PR + G ++R P T Q
Sbjct: 443 PQG--FQGMPSALR-QSGPRPALRHLAPTGNAPASRGLPTTAQ 482
Score = 282 (104.3 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 85/205 (41%), Positives = 106/205 (51%)
Query: 88 QPQRFYG-PTQMTQIRPQPRWAAAPQMRPSGQT--AQGFPNIPQFRSAPRASTGQTVIRG 144
+PQ F G P+ + Q P+P A + P+G ++G P Q + G
Sbjct: 442 RPQGFQGMPSALRQSGPRP---ALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFGG 498
Query: 145 ANMSARPITGQSTMG--PRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTXXXXXX 200
A + + +T G P P AP +AA R Y KY VR+P
Sbjct: 499 AGAAQQGLTDSCQSGGVPTAV-PNLAPRATVAAAAPRAVAPY-KYASNVRSPHPAIQPLQ 556
Query: 201 XXXXXXXXXXXXXXXXXXEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGM 260
EPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGM
Sbjct: 557 APQPAVHVQGQ-------EPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGM 609
Query: 261 LLEIDNAELLYMLEHNESLKSKVEE 285
LLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 610 LLEIDNSELLHMLESPESLRSKVDE 634
Score = 136 (52.9 bits), Expect = 1.3e-35, Sum P(2) = 1.3e-35
Identities = 26/55 (47%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ + K ++V AQ+K +R+A L ++ Q
Sbjct: 228 GKSKGFGFVSYEKHEDANKAVEEMNGKEMSGKSIFVGRAQKKVERQAELKRKFEQ 282
Score = 106 (42.4 bits), Expect = 1.8e-32, Sum P(2) = 1.8e-32
Identities = 21/69 (30%), Positives = 43/69 (62%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+G SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 134 ENG-SKGYAFVHFETQEAANKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFT 191
Query: 63 NMRMQQMGQ 71
N+ ++ G+
Sbjct: 192 NVYIKNFGE 200
Score = 81 (33.6 bits), Expect = 7.4e-30, Sum P(2) = 7.4e-30
Identities = 17/57 (29%), Positives = 33/57 (57%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS G+ +V F P +A +A+ MN +I KP+ + +QR RK+ + + +++ +
Sbjct: 50 RSLGYAYVNFQQPADAERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNL 106
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 417 (151.9 bits), Expect = 1.9e-38, P = 1.9e-38
Identities = 93/163 (57%), Positives = 109/163 (66%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M EDGRSKGFGFVCFSSPEEATKAVTEMNGRI+GSKPLYVALAQRKE+RKAHL +QYMQR
Sbjct: 366 MLEDGRSKGFGFVCFSSPEEATKAVTEMNGRIVGSKPLYVALAQRKEERKAHLTNQYMQR 425
Query: 61 IANMRMQQMGQL---FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMR 114
+A MR + FQP + GGYFVP +PQ Q +Y P Q+ Q+RP PRW R
Sbjct: 426 VAGMRALPANAILNQFQPAA-GGYFVPAVPQAQGRPPYYTPNQLAQMRPNPRWQQGG--R 482
Query: 115 PSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSAR--PITGQ 155
P G QG P+ + +S PR + G ++R P T Q
Sbjct: 483 PQG--FQGMPSAIR-QSGPRPALRHLAPTGNAPASRGLPTTAQ 522
Score = 282 (104.3 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 85/204 (41%), Positives = 107/204 (52%)
Query: 88 QPQRFYG-PTQMTQIRPQPRWAAAPQMRPSGQT--AQGFPNIPQFRSAPRASTGQTVIRG 144
+PQ F G P+ + Q P+P A + P+G ++G P Q + G
Sbjct: 482 RPQGFQGMPSAIRQSGPRP---ALRHLAPTGNAPASRGLPTTAQRVGSECPDRLAMDFGG 538
Query: 145 ANMSARPIT-GQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTXXXXXXX 201
A + + +T G + G AP A +AA R Y KY VR+P
Sbjct: 539 AGAAQQGLTDGCQSGGVPTAVQTLAPRAAVAAAAPRAVAPY-KYASSVRSPHPAIQPLQA 597
Query: 202 XXXXXXXXXXXXXXXXXEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML 261
EPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGML
Sbjct: 598 PQPAVHVQGQ-------EPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGML 650
Query: 262 LEIDNAELLYMLEHNESLKSKVEE 285
LEIDN+ELL+MLE ESL+SKV+E
Sbjct: 651 LEIDNSELLHMLESPESLRSKVDE 674
Score = 138 (53.6 bits), Expect = 1.0e-35, Sum P(2) = 1.0e-35
Identities = 27/55 (49%), Positives = 38/55 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 268 GKSKGFGFVSYEKHEDANKAVEEMNGKEISGKVIFVGRAQKKVERQAELKRKFEQ 322
Score = 105 (42.0 bits), Expect = 3.0e-32, Sum P(2) = 3.0e-32
Identities = 21/69 (30%), Positives = 43/69 (62%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+G SKG+ FV F + E A KA+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 174 ENG-SKGYAFVHFETQEAADKAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAK-AKEFT 231
Query: 63 NMRMQQMGQ 71
N+ ++ G+
Sbjct: 232 NVYIKNFGE 240
Score = 47 (21.6 bits), Expect = 3.5e-26, Sum P(2) = 3.5e-26
Identities = 11/42 (26%), Positives = 24/42 (57%)
Query: 21 ATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
A +A+ MN +I KP+ + +QR RK+ + + +++ +
Sbjct: 105 AERALDTMNFDVIKGKPIRIMWSQRDPSLRKSGVGNVFIKNL 146
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 409 (149.0 bits), Expect = 1.2e-37, P = 1.2e-37
Identities = 117/292 (40%), Positives = 154/292 (52%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RIAN 63
G S+G GFV FS+PEEAT+A+TEMNG++I +KPLYVALAQRKEDRKA L +Q+ Q R N
Sbjct: 364 GVSRGSGFVAFSTPEEATRAITEMNGKMIVTKPLYVALAQRKEDRKARLQAQFSQMRPVN 423
Query: 64 MRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGF 123
M +G Q GG P + Q Q FYG I PQP + Q+ P G G
Sbjct: 424 MP-PAVGPRMQMYPPGG---PPMGQ-QLFYGQGPPAMI-PQPGFGYQQQLVP-GMRPGGS 476
Query: 124 PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPM-QAPGPASVSAAGRQTG 182
P +P F P GQ + RP G+ RG P Q P P + G
Sbjct: 477 P-MPNF-FMPMMQQGQQQQQQQQQQQRPGGGR-----RGALPQPQQPSPM-MQQQMHPRG 528
Query: 183 GYNKYPVRN----PG-TXXXXXXXXXXXXXXXXXXXXXXXXEPLT----STMLAAAQPQE 233
+YP R+ PG T +P+ +T LA A P++
Sbjct: 529 RMYRYPQRDVNTMPGPTQNMLSVPYDVSSGGGVHHRDSPTSQPVPIVALATRLANAAPEQ 588
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
Q+ MLGE L+PL++++ PE A K+TGMLLE+D E+L++LE E+LK+KV E
Sbjct: 589 QRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTE 640
Score = 123 (48.4 bits), Expect = 9.8e-05, P = 9.8e-05
Identities = 23/67 (34%), Positives = 39/67 (58%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G+SKGFGFV F + ++A +AV +NG+ K +V AQ+K +R+ L ++ Q +
Sbjct: 260 EGKSKGFGFVNFENSDDAARAVDALNGKTFDDKEWFVGKAQKKSERETELKQKFEQSLKE 319
Query: 64 MRMQQMG 70
+ G
Sbjct: 320 AADKSQG 326
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 405 (147.6 bits), Expect = 4.9e-37, P = 4.9e-37
Identities = 125/303 (41%), Positives = 155/303 (51%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+SKGFGFVCFSSP+EA+KAVTEMN R++ KPLYVALAQRK+ R++ L + R N+
Sbjct: 414 GKSKGFGFVCFSSPDEASKAVTEMNQRMVNGKPLYVALAQRKDVRRSQLEASIQAR-NNI 472
Query: 65 RMQQ------MGQLFQ-------PGSTGGYFVPTLPQPQRFYGPTQMTQIRPQP-RWAAA 110
R QQ MGQ + PG G F+P + F P Q + P R
Sbjct: 473 RQQQAAAAAGMGQAYMAPAVFYGPGQQG--FIPGAQRGGMF--PPQPGMMMGMPGRPGQY 528
Query: 111 PQMRPSGQTAQGF-PNI---PQFRSAPR-ASTGQTVIRGANMSARPITGQSTMGPRGGGP 165
P P Q +G PN P F+ P A G + G M + GQ G RG G
Sbjct: 529 PGPFPGQQGGRGVGPNQQIPPNFQGLPMGAMQGPGIPNG--MGYPMVQGQFG-GGRGRG- 584
Query: 166 MQAPGPASVSAAGRQTGGYNKYPV---RNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLT 222
Q PG G GG P+ PG LT
Sbjct: 585 -QVPGMGGPMRGG-YGGGRGGVPLGGQMRPGQGGRGQAVGQPGPETPVGV--------LT 634
Query: 223 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 282
+ L+AA PQ+QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE +E+L++K
Sbjct: 635 AQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALRAK 694
Query: 283 VEE 285
V+E
Sbjct: 695 VDE 697
Score = 134 (52.2 bits), Expect = 6.1e-06, P = 6.1e-06
Identities = 27/54 (50%), Positives = 37/54 (68%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G+S+GFGFV FS+ E A AV EMN + + S+ LYV AQ+K +R+ L QY
Sbjct: 259 EGKSRGFGFVNFSTHESAQAAVEEMNDKEVRSQKLYVGRAQKKHEREEELRKQY 312
>UNIPROTKB|H0YB86 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523636
Uniprot:H0YB86
Length = 165
Score = 367 (134.2 bits), Expect = 9.5e-34, P = 9.5e-34
Identities = 71/114 (62%), Positives = 87/114 (76%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 17 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 76
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAA 109
+A++R + +QP GYF+ +PQ Q +Y P+Q+ Q+RP PRW A
Sbjct: 77 MASVRAVPNPVINPYQPAPPSGYFMAAIPQTQNRAAYYPPSQIAQLRPSPRWTA 130
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 230 (86.0 bits), Expect = 5.5e-33, Sum P(2) = 5.5e-33
Identities = 63/166 (37%), Positives = 88/166 (53%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIAN 63
+G SKG GFV F++PEEAT+A+++++G++I SKPLYVA+AQRKEDR+ L +Q+ Q +
Sbjct: 354 NGTSKGSGFVAFATPEEATEAMSQLSGKMIESKPLYVAIAQRKEDRRVRLQAQFSQ-VRP 412
Query: 64 MRMQ-QMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWA----AAPQMRPSGQ 118
+ MQ +G GG P + Q Q FYG I PQP + P MRP G
Sbjct: 413 VAMQPSVGPRMPVYPPGG---PGIGQ-QMFYGQAPPAMIPPQPGYGYQQQLVPGMRPGGG 468
Query: 119 TAQGF--PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRG 162
F P + + P I+ + P+ Q M PRG
Sbjct: 469 PVPSFFMPMVQPQQQRPGGGRRPGGIQHSQQQ-NPMM-QQQMHPRG 512
Score = 164 (62.8 bits), Expect = 5.5e-33, Sum P(2) = 5.5e-33
Identities = 35/70 (50%), Positives = 51/70 (72%)
Query: 220 PLTSTMLAA----AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEH 275
PLT LA+ A P++Q+ MLGE L+PL++++ E A K+TGMLLE+D E+L++LE
Sbjct: 537 PLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLES 596
Query: 276 NESLKSKVEE 285
E+LK+KV E
Sbjct: 597 PEALKAKVAE 606
Score = 126 (49.4 bits), Expect = 9.1e-19, Sum P(2) = 9.1e-19
Identities = 24/58 (41%), Positives = 36/58 (62%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+G+SKGFGFV F + ++A +AV +NG K YV AQ+K +R+ L +Y Q +
Sbjct: 251 EGKSKGFGFVNFENADDAARAVESLNGHKFDDKEWYVGRAQKKSERETELRVRYEQNL 308
Score = 106 (42.4 bits), Expect = 1.1e-16, Sum P(2) = 1.1e-16
Identities = 21/67 (31%), Positives = 40/67 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-----KAHLAS 55
+ G+SKG+GFV +++ E A KA+ ++NG ++ K +YV R+++R K +
Sbjct: 157 VDSSGQSKGYGFVQYANEESAQKAIEKLNGMLLNDKQVYVGPFLRRQERDSTANKTKFTN 216
Query: 56 QYMQRIA 62
Y++ +A
Sbjct: 217 VYVKNLA 223
Score = 80 (33.2 bits), Expect = 5.6e-14, Sum P(2) = 5.6e-14
Identities = 15/40 (37%), Positives = 27/40 (67%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
RS G+G+V F++P++A +A+ E+N + KP+ V + R
Sbjct: 75 RSLGYGYVNFTNPQDAARAIQELNYIPLYGKPIRVMYSHR 114
Score = 38 (18.4 bits), Expect = 6.4e-05, Sum P(2) = 6.4e-05
Identities = 8/22 (36%), Positives = 12/22 (54%)
Query: 220 PLTSTMLAAAQPQEQKQMLGER 241
P+ S + QPQ+Q+ G R
Sbjct: 469 PVPSFFMPMVQPQQQRPGGGRR 490
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 220 (82.5 bits), Expect = 9.0e-33, Sum P(2) = 9.0e-33
Identities = 60/162 (37%), Positives = 84/162 (51%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
++ G S+GFGFV +S+PEEA +A++EMNG++IG KPLY+ALAQRKEDR+AHL + + Q
Sbjct: 365 LNPQGMSRGFGFVAYSNPEEALRALSEMNGKMIGRKPLYIALAQRKEDRRAHLQALFSQI 424
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQP-RWAAAPQMRPSGQT 119
A M G PG +P PQ + G + + QP + PQ P +
Sbjct: 425 RAPGPMS--GFHHPPGGP----MPGPPQ-HMYVGQNGASMVPSQPIGYGFQPQFMPGMRP 477
Query: 120 AQGFPN--IPQ-FRSAPRASTGQTVIRGANMSARPITGQSTM 158
G N +P + P+ RGA + I Q M
Sbjct: 478 GSGPGNFIVPYPLQRQPQTGPRMGFRRGATNVQQHIQQQQLM 519
Score = 173 (66.0 bits), Expect = 9.0e-33, Sum P(2) = 9.0e-33
Identities = 35/65 (53%), Positives = 51/65 (78%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LTS+ LA+A P ++ +MLGE+L+PL++R P K+TGMLLE+D AE+L+++E E+LK
Sbjct: 575 LTSS-LASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALK 633
Query: 281 SKVEE 285
SKV E
Sbjct: 634 SKVSE 638
Score = 118 (46.6 bits), Expect = 3.8e-19, Sum P(2) = 3.8e-19
Identities = 28/72 (38%), Positives = 38/72 (52%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RI 61
+ G S+ FGFV F E A AV +MNG +G LYV AQ+K +R+ L ++ Q RI
Sbjct: 264 QSGNSRCFGFVNFECTEAAASAVEKMNGISLGDDVLYVGRAQKKSEREEELRRKFEQERI 323
Query: 62 ANMRMQQMGQLF 73
Q L+
Sbjct: 324 NRFEKSQGANLY 335
Score = 99 (39.9 bits), Expect = 3.6e-17, Sum P(2) = 3.6e-17
Identities = 19/49 (38%), Positives = 30/49 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
M GRSKG+GFV F E A A+ ++NG ++ K ++V R+++R
Sbjct: 169 MDVTGRSKGYGFVQFEKEESAQAAIDKLNGMLMNDKQVFVGHFIRRQER 217
Score = 68 (29.0 bits), Expect = 6.1e-14, Sum P(2) = 6.1e-14
Identities = 12/43 (27%), Positives = 27/43 (62%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
++ RS G+ ++ FS+P +A +A+ +N + +P+ + L+ R
Sbjct: 84 QNRRSLGYAYINFSNPNDAYRAMEALNYTPLFDRPIRIMLSNR 126
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 204 (76.9 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 39/65 (60%), Positives = 51/65 (78%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT+ LA+A P QKQ+LGE LFPL+ +P LAGKITGM+LE+DN+ELL +LE+ E LK
Sbjct: 802 LTAAALASAPPSMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLK 861
Query: 281 SKVEE 285
K++E
Sbjct: 862 KKIDE 866
Score = 169 (64.5 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 41/88 (46%), Positives = 53/88 (60%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E +SKGFGFVCF+S EEA KAVTEM+ +II KPLYV LA+++E R + L ++ R+
Sbjct: 485 EKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF--RMH 542
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQ 90
+R L P Y P PQ Q
Sbjct: 543 PIRHHMNNPLNTPMQ---YASPQSPQLQ 567
Score = 98 (39.6 bits), Expect = 8.1e-23, Sum P(2) = 8.1e-23
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH---LASQYMQ 59
E G+SK +GFV + E A +A+ ++NG +GSK +YV +K +R + + Y++
Sbjct: 139 EFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVK 198
Query: 60 RIANMRMQ-QMGQLFQP 75
+ + + QLF P
Sbjct: 199 NFPDSVTETHLRQLFNP 215
Score = 50 (22.7 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII 33
D +++ F F+ ++ E A A+ +NG+ I
Sbjct: 227 DNKNRKFCFINYADAESAKNAMDNLNGKKI 256
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 204 (76.9 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 39/65 (60%), Positives = 51/65 (78%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
LT+ LA+A P QKQ+LGE LFPL+ +P LAGKITGM+LE+DN+ELL +LE+ E LK
Sbjct: 802 LTAAALASAPPSMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLILLENEEQLK 861
Query: 281 SKVEE 285
K++E
Sbjct: 862 KKIDE 866
Score = 169 (64.5 bits), Expect = 3.0e-30, Sum P(2) = 3.0e-30
Identities = 41/88 (46%), Positives = 53/88 (60%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E +SKGFGFVCF+S EEA KAVTEM+ +II KPLYV LA+++E R + L ++ R+
Sbjct: 485 EKEQSKGFGFVCFASQEEANKAVTEMHLKIINGKPLYVGLAEKREQRLSRLQQRF--RMH 542
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQ 90
+R L P Y P PQ Q
Sbjct: 543 PIRHHMNNPLNTPMQ---YASPQSPQLQ 567
Score = 98 (39.6 bits), Expect = 8.1e-23, Sum P(2) = 8.1e-23
Identities = 24/77 (31%), Positives = 42/77 (54%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH---LASQYMQ 59
E G+SK +GFV + E A +A+ ++NG +GSK +YV +K +R + + Y++
Sbjct: 139 EFGKSKSYGFVHYEDEESAKEAIEKVNGVQLGSKNVYVGPFIKKSERATNDTKFTNLYVK 198
Query: 60 RIANMRMQ-QMGQLFQP 75
+ + + QLF P
Sbjct: 199 NFPDSVTETHLRQLFNP 215
Score = 50 (22.7 bits), Expect = 8.2e-18, Sum P(2) = 8.2e-18
Identities = 9/30 (30%), Positives = 18/30 (60%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRII 33
D +++ F F+ ++ E A A+ +NG+ I
Sbjct: 227 DNKNRKFCFINYADAESAKNAMDNLNGKKI 256
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 250 (93.1 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 74/173 (42%), Positives = 89/173 (51%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ E G+SKGFGFVCF++PEEATKA+TEMN R+I KPLYVALAQRK+ R++ L Q R
Sbjct: 369 VDEAGKSKGFGFVCFTTPEEATKAITEMNTRMINGKPLYVALAQRKDVRRSQLEQQIQAR 428
Query: 61 IANMRMQQM------GQLFQPGSTG--GYFVPTLPQPQRFYGPT--QMTQIRPQPRWAAA 110
MRMQ GQ P G G+F P + GP M + R QP
Sbjct: 429 -NQMRMQNAAAGGLPGQFIPPMFYGQQGFFPPNGRGNAPYPGPNPQMMMRGRGQPFPEQW 487
Query: 111 PQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGG 163
P+ P+GQ + PQF Q G NM RP Q PRGG
Sbjct: 488 PRPGPNGQPVPVYGIPPQF---------QQDFNGQNM--RP-QQQQQQQPRGG 528
Score = 138 (53.6 bits), Expect = 2.1e-14, Sum P(2) = 2.1e-14
Identities = 31/72 (43%), Positives = 41/72 (56%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RI 61
+DG+SKGFGFV F E A KAV E+N + I + +YV AQ+K +R L QY R+
Sbjct: 268 QDGKSKGFGFVNFEDHESAVKAVEELNDKEINGQKIYVGRAQKKRERLEELKKQYEAVRL 327
Query: 62 ANMRMQQMGQLF 73
+ Q LF
Sbjct: 328 EKLAKYQGVNLF 339
Score = 116 (45.9 bits), Expect = 3.9e-30, Sum P(2) = 3.9e-30
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 226 LAAAQPQEQ-KQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
+ ++ PQ+Q K++LGE L+P I + PE AGKITGM+L ++N E+L +L+ +E
Sbjct: 544 IISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDDELFN 603
Query: 281 SKVEE 285
+ E+
Sbjct: 604 NHFED 608
Score = 93 (37.8 bits), Expect = 2.1e-09, Sum P(2) = 2.1e-09
Identities = 25/81 (30%), Positives = 42/81 (51%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR-------KAHLAS 55
E G+SK FGFV + + E A A+ +NG ++ + ++V K+DR KA+ +
Sbjct: 175 EFGQSKCFGFVHYETAEAAEAAIENVNGMLLNDREVFVGKHISKKDRESKFEEMKANFTN 234
Query: 56 QYMQRI-ANMRMQQMGQLFQP 75
Y++ I N + +LF P
Sbjct: 235 IYVKNIDLNYSEESFEKLFSP 255
Score = 59 (25.8 bits), Expect = 6.5e-06, Sum P(2) = 6.5e-06
Identities = 12/40 (30%), Positives = 22/40 (55%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
+S G+ +V + E+ KA+ E+N I +P + +QR
Sbjct: 91 KSLGYAYVNYHKYEDGEKAIEELNYNPIEGRPCRIMWSQR 130
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 314 (115.6 bits), Expect = 2.6e-27, P = 2.6e-27
Identities = 83/194 (42%), Positives = 103/194 (53%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E G SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QYMQR
Sbjct: 326 MTEGGHSKGFGFVCFSSPEEATKAVTEMNGRILGTKPLYVALAQRKEERKAILTNQYMQR 385
Query: 61 IANMRM---QQMGQLFQPGSTGGYFVPTLPQP-QR--FYGPTQMTQIRPQPRWAAAP--- 111
++ +R +G QP S YF+P++PQ R F + + P W + P
Sbjct: 386 LSTVRALGGPLLGSFHQPTS---YFLPSVPQKLDRPPFKNFFSVVHLLHTPFWPSMPGCM 442
Query: 112 QMRPSGQTAQGFPNIPQFRSA--PRA-STGQTVIRGANMSARPITGQSTMGPRGGGPMQA 168
P+ Q A G + + P + S G V+R GP
Sbjct: 443 TTSPNQQRASGISAACRALACGLPASLSAGGHVLRSTAWEGSSQDLDCLSGPATSHVAAP 502
Query: 169 PGPASVSAAGRQTG 182
PGP AG G
Sbjct: 503 PGPGQQCQAGLYPG 516
Score = 234 (87.4 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 63/142 (44%), Positives = 77/142 (54%)
Query: 145 ANMSARPITGQSTM-GPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTXXXXXXXXX 203
++++A P GQ G G AP P S S +G + Y P P
Sbjct: 497 SHVAAPPGPGQQCQAGLYPGATPGAPHPKSGSLSGPNSPAYLLQPTLVPRPQEPAGPHVQ 556
Query: 204 XXXXXXXXXXXXXXXEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLE 263
EPLT++MLAAA EQKQM+GERL+PLI + +LAGKITGMLLE
Sbjct: 557 VQEPAVRILGQ----EPLTASMLAAAPLHEQKQMIGERLYPLIYNTHTQLAGKITGMLLE 612
Query: 264 IDNAELLYMLEHNESLKSKVEE 285
IDN+ELL MLE ESL +KVEE
Sbjct: 613 IDNSELLLMLESPESLNAKVEE 634
Score = 131 (51.2 bits), Expect = 6.3e-30, Sum P(2) = 6.3e-30
Identities = 27/60 (45%), Positives = 40/60 (66%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
M +D G S+GFGFV F EEA KAV +MNG+ + + LYV AQ++ +R++ L ++ Q
Sbjct: 223 MRDDSGHSRGFGFVNFQKHEEAQKAVMDMNGKEVSGRLLYVGRAQKRVERQSELKRRFEQ 282
Score = 104 (41.7 bits), Expect = 4.2e-27, Sum P(2) = 4.2e-27
Identities = 19/57 (33%), Positives = 36/57 (63%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+D S+GFGFV F + E A +A+T MNG ++ + ++V + + +R+ L ++ M+
Sbjct: 133 DDHGSRGFGFVHFETHEAAQQAITTMNGMLLNDRKVFVGHFKSRREREVELGARAME 189
Score = 76 (31.8 bits), Expect = 3.6e-24, Sum P(2) = 3.6e-24
Identities = 15/57 (26%), Positives = 33/57 (57%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS G+ ++ F P +A +A+ MN +I +P+ + +QR RK+ + + +++ +
Sbjct: 50 RSLGYAYINFQQPADAERALDTMNFEVIKGQPIRIMWSQRDPGLRKSGVGNIFIKNL 106
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 227 (85.0 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 81/249 (32%), Positives = 107/249 (42%)
Query: 53 LASQYMQRIANMRMQQMGQ--LFQPGSTGGYFVPT----LPQPQRFYGPTQMTQIRPQPR 106
L Q A M Q M + PGS G+ P +P PQ G M RP
Sbjct: 488 LRMQQAAAAAGMPQQYMQAPVFYGPGSQPGFMPPAGGRGMPYPQ---GGMPMQPGRPGQF 544
Query: 107 WAA-APQMRPSGQTAQGFP---NIP-QFRSA---PRASTGQTVIRGANMSARPITGQSTM 158
A A Q G QG P +P QF P+ + Q + + + G
Sbjct: 545 PAGFAAQQGGRGAMPQGIPPMYGLPGQFPPQGPFPQPNNPQFLAAMQQIQQSALAG-GRG 603
Query: 159 GPRGGGPMQAPGPASVSAAGRQTGGYNKYP-VRNPGTXXXXXXXXXXXXXXXXXXXXXXX 217
GP G GPMQ P G G+ + PG
Sbjct: 604 GPAGRGPMQGGVPVPGMPGGAGLPGFPPNARQQGPGAGRGAAAGRAPAGAPAGARGAGAP 663
Query: 218 XEPLTSTMLAAAQ-PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHN 276
E L + A A P +QKQ+LGE +FP IQ ++PELAGKITGMLLE+DN EL+ ++E++
Sbjct: 664 -EGLQGQLAAVADNPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVEND 722
Query: 277 ESLKSKVEE 285
+L+SKV+E
Sbjct: 723 GALRSKVDE 731
Score = 217 (81.4 bits), Expect = 1.0e-16, P = 1.0e-16
Identities = 77/204 (37%), Positives = 97/204 (47%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
S+ G+SKGFGFVCF++P++ATKAV EMN R++ +KPLYVALAQRK+ RK L Q +Q
Sbjct: 427 SKLGKSKGFGFVCFANPDDATKAVAEMNQRMVNNKPLYVALAQRKDVRKNQL-EQSIQAR 485
Query: 62 ANMRMQQ------MGQLFQ-------PGSTGGYFVPT----LPQPQRFYGPTQMTQIRPQ 104
+RMQQ M Q + PGS G+ P +P PQ G M RP
Sbjct: 486 NQLRMQQAAAAAGMPQQYMQAPVFYGPGSQPGFMPPAGGRGMPYPQ---GGMPMQPGRPG 542
Query: 105 PRWAA-APQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGAN----MSARPITGQSTM- 158
A A Q G QG P P + P Q N ++A QS +
Sbjct: 543 QFPAGFAAQQGGRGAMPQGIP--PMY-GLPGQFPPQGPFPQPNNPQFLAAMQQIQQSALA 599
Query: 159 GPRGGGPMQAPGPASVSAAGRQTG 182
G RGG + P V G G
Sbjct: 600 GGRGGPAGRGPMQGGVPVPGMPGG 623
Score = 129 (50.5 bits), Expect = 1.1e-28, Sum P(2) = 1.1e-28
Identities = 26/55 (47%), Positives = 37/55 (67%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
E G+S+GFGFV F+S E+A+KAV E+N + + LYV AQ+K +R+ L Y
Sbjct: 278 ETGKSRGFGFVNFTSHEDASKAVQELNEKEFHGQNLYVGRAQKKHEREEELRKSY 332
Score = 103 (41.3 bits), Expect = 5.6e-26, Sum P(2) = 5.6e-26
Identities = 19/49 (38%), Positives = 33/49 (67%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
E+G SKG+GFV + + E A++A+ +NG ++ K +YV K+DR++
Sbjct: 184 ENGNSKGYGFVHYETDEAASQAIKHVNGMLLNEKKVYVGHHIPKKDRQS 232
Score = 63 (27.2 bits), Expect = 8.4e-22, Sum P(2) = 8.4e-22
Identities = 12/40 (30%), Positives = 24/40 (60%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
RS G+ +V +++ + KA+ E+N +I +P + +QR
Sbjct: 100 RSLGYAYVNYNTTADGEKALEELNYTLIKGRPCRIMWSQR 139
>SGD|S000000967 [details] [associations]
symbol:PAB1 "Poly(A) binding protein" species:4932
"Saccharomyces cerevisiae" [GO:0008143 "poly(A) RNA binding"
evidence=IDA;IMP] [GO:0005634 "nucleus" evidence=IEA;IDA]
[GO:0005840 "ribosome" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IEA;IDA] [GO:0006446 "regulation of translational
initiation" evidence=IMP;IDA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0006417 "regulation of translation" evidence=IEA] [GO:0006810
"transport" evidence=IEA] [GO:0051028 "mRNA transport"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IMP;IDA] [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
SGD:S000000967 GO:GO:0005634 GO:GO:0000166 GO:GO:0006446
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005840 EMBL:BK006939
GO:GO:0051028 EMBL:U18922 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 GO:GO:0060211
GeneTree:ENSGT00640000091232 OrthoDB:EOG4QJVWJ EMBL:M12780
EMBL:M13371 EMBL:D00023 EMBL:AY692854 PIR:A25221 RefSeq:NP_011092.1
PDB:1IFW PDBsum:1IFW ProteinModelPortal:P04147 SMR:P04147
DIP:DIP-2275N IntAct:P04147 MINT:MINT-693056 STRING:P04147
PaxDb:P04147 PeptideAtlas:P04147 EnsemblFungi:YER165W GeneID:856912
KEGG:sce:YER165W OMA:ITEKNQQ EvolutionaryTrace:P04147
NextBio:983356 Genevestigator:P04147 GermOnline:YER165W
Uniprot:P04147
Length = 577
Score = 249 (92.7 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 62/136 (45%), Positives = 78/136 (57%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRI 61
+E+G+SKGFGFVCFS+PEEATKA+TE N +I+ KPLYVA+AQRK+ R++ LA Q R
Sbjct: 356 TENGKSKGFGFVCFSTPEEATKAITEKNQQIVAGKPLYVAIAQRKDVRRSQLAQQIQAR- 414
Query: 62 ANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYG--PTQMTQIR-PQPRWAAAPQMRP-SG 117
MR QQ + G +P P FYG P + P P+ QM P G
Sbjct: 415 NQMRYQQATAAAAAAAAG---MPGQFMPPMFYGVMPPRGVPFNGPNPQ-----QMNPMGG 466
Query: 118 QTAQGFPNIPQFRSAP 133
G P PQFR+ P
Sbjct: 467 MPKNGMP--PQFRNGP 480
Score = 121 (47.7 bits), Expect = 5.5e-10, Sum P(2) = 5.5e-10
Identities = 29/71 (40%), Positives = 38/71 (53%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRIA 62
DG+ KGFGFV + E+A KAV +N + + LYV AQ+K +R L QY R+
Sbjct: 255 DGKLKGFGFVNYEKHEDAVKAVEALNDSELNGEKLYVGRAQKKNERMHVLKKQYEAYRLE 314
Query: 63 NMRMQQMGQLF 73
M Q LF
Sbjct: 315 KMAKYQGVNLF 325
Score = 112 (44.5 bits), Expect = 6.3e-09, Sum P(2) = 6.3e-09
Identities = 27/79 (34%), Positives = 47/79 (59%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRK-----EDRKAHLAS 55
E+G+SKGFGFV F A +A+ +NG ++ + +YVA L++++ E+ KAH +
Sbjct: 161 ENGKSKGFGFVHFEEEGAAKEAIDALNGMLLNGQEIYVAPHLSRKERDSQLEETKAHYTN 220
Query: 56 QYMQRI-ANMRMQQMGQLF 73
Y++ I + +Q +LF
Sbjct: 221 LYVKNINSETTDEQFQELF 239
Score = 92 (37.4 bits), Expect = 1.1e-27, Sum P(2) = 1.1e-27
Identities = 21/56 (37%), Positives = 35/56 (62%)
Query: 232 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
Q+Q+Q LGE+L+ + + E AGKITGM+L++ E+ +LE +E + +E
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKE 558
>UNIPROTKB|H0YAR2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519100
Uniprot:H0YAR2
Length = 284
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 60/90 (66%), Positives = 72/90 (80%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 195 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 254
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQ 88
+A++R + +QP GYF+ +PQ
Sbjct: 255 MASVRAVPNPVINPYQPAPPSGYFMAAIPQ 284
Score = 143 (55.4 bits), Expect = 9.5e-08, P = 9.5e-08
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 95 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 151
Score = 109 (43.4 bits), Expect = 0.00097, P = 0.00097
Identities = 24/84 (28%), Positives = 47/84 (55%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+G SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 6 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFT 63
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTL 86
N+ ++ G+ F P L
Sbjct: 64 NVYIKNFGEDMDDERLKDLFGPAL 87
>UNIPROTKB|H0YBQ4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519596
Uniprot:H0YBQ4
Length = 258
Score = 308 (113.5 bits), Expect = 1.7e-27, P = 1.7e-27
Identities = 60/90 (66%), Positives = 72/90 (80%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M E GRSKGFGFVCFSSPEEATKAVTEMNGRI+ +KPLYVALAQRKE+R+AHL +QYMQR
Sbjct: 159 MMEGGRSKGFGFVCFSSPEEATKAVTEMNGRIVATKPLYVALAQRKEERQAHLTNQYMQR 218
Query: 61 IANMRMQQMGQL--FQPGSTGGYFVPTLPQ 88
+A++R + +QP GYF+ +PQ
Sbjct: 219 MASVRAVPNPVINPYQPAPPSGYFMAAIPQ 248
Score = 143 (55.4 bits), Expect = 6.8e-08, P = 6.8e-08
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 59 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 115
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 302 (111.4 bits), Expect = 4.3e-26, P = 4.3e-26
Identities = 76/186 (40%), Positives = 98/186 (52%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
M+E SKGFGFVCFSSPEEATKAVTEMNGRI+G+KPLYVALAQRKE+RKA L +QY +R
Sbjct: 326 MTESSHSKGFGFVCFSSPEEATKAVTEMNGRIVGTKPLYVALAQRKEERKAILTNQYRRR 385
Query: 61 IANMRMQQMGQLFQPGSTGGYFVPTLPQPQR---FYGPTQMTQIRPQPRWAAAPQMRPSG 117
++ + QP S Y +P + Q +Y + ++P PRW A P PS
Sbjct: 386 LSR---SVLSSFQQPTS---YLLPAVHQSTTQTMYYSSASIAPMQPDPRWTAQPH-GPSS 438
Query: 118 QTAQGFPNIPQFRSAPRA----STGQTVIRGANMSARPIT-GQSTMGPRGGGPMQAPGPA 172
+ +AP S+ + R + G T GP G G PG
Sbjct: 439 TCPPAASVVQPLSTAPHPCIHLSSASQASSQVPHTQRVVNIGTQTTGPGGEGSC-IPGQP 497
Query: 173 SVSAAG 178
++ G
Sbjct: 498 LLAHRG 503
Score = 188 (71.2 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 65/180 (36%), Positives = 80/180 (44%)
Query: 110 APQMRPSGQ-TAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQA 168
AP M+P + TAQ P+ P P AS V++ + + P S+ Q
Sbjct: 421 AP-MQPDPRWTAQ--PHGPSSTCPPAAS----VVQPLSTAPHPCIHLSSASQASS---QV 470
Query: 169 PGPASVSAAGRQT---GGYNKYPVRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTM 225
P V G QT GG P +PLT +M
Sbjct: 471 PHTQRVVNIGTQTTGPGGEGSCIPGQPLLAHRGSSAVHSAHGVQESTVYVPGHQPLTVSM 530
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
L AA EQKQM+GERL+ LI L GKITGMLLE+DN ELL +LE ESL +K EE
Sbjct: 531 LDAAPLHEQKQMIGERLYSLIHDACAPLTGKITGMLLEMDNLELLLLLESPESLHAKAEE 590
Score = 124 (48.7 bits), Expect = 1.2e-22, Sum P(2) = 1.2e-22
Identities = 24/56 (42%), Positives = 37/56 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+S+GFGF+ F EEA KAV MNG+ + + LYV AQ++ +R+ L ++ Q
Sbjct: 227 NGQSRGFGFINFEKHEEAQKAVDHMNGKEVSGQLLYVGRAQKRAERQNELKRRFEQ 282
Score = 99 (39.9 bits), Expect = 4.8e-20, Sum P(2) = 4.8e-20
Identities = 20/55 (36%), Positives = 35/55 (63%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQ 56
+E G S+GFGFV F + E A KA+ MNG ++ + ++V + ++ R+A L ++
Sbjct: 133 NEHG-SRGFGFVHFETHEAAQKAINTMNGMLLNDRKVFVGHFKSRQKREAELGAR 186
>UNIPROTKB|H0Y6X6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 SMART:SM00517
GO:GO:0003723 EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
ProteinModelPortal:H0Y6X6 PRIDE:H0Y6X6 Ensembl:ENST00000437136
Bgee:H0Y6X6 Uniprot:H0Y6X6
Length = 195
Score = 265 (98.3 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 54/67 (80%), Positives = 61/67 (91%)
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+MLE ES
Sbjct: 107 EPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPES 166
Query: 279 LKSKVEE 285
L+SKV+E
Sbjct: 167 LRSKVDE 173
Score = 43 (20.2 bits), Expect = 6.4e-26, Sum P(2) = 6.4e-26
Identities = 24/75 (32%), Positives = 31/75 (41%)
Query: 108 AAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPIT-GQSTMGPRGG-GP 165
AA + S Q+ G P Q APRA+ V A + P S P P
Sbjct: 40 AAQQGLTDSCQSG-GVPTAVQ-NLAPRAA----VAAAAPRAVAPYKYASSVRSPHPAIQP 93
Query: 166 MQAPGPASVSAAGRQ 180
+QAP PA V G++
Sbjct: 94 LQAPQPA-VHVQGQE 107
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 191 (72.3 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 41/86 (47%), Positives = 52/86 (60%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E G+SKGFGFVCFS+PEEA AV +G++ KPLYVA+AQ+KEDRK L Q+ R+
Sbjct: 339 EKGKSKGFGFVCFSTPEEAIDAVKTFHGQMFHGKPLYVAIAQKKEDRKMQLQVQFGNRV- 397
Query: 63 NMRMQQMGQLFQPGSTGG-YFVPTLP 87
R PG+ Y+ T P
Sbjct: 398 EARKSSSSASVNPGTYAPLYYTNTHP 423
Score = 140 (54.3 bits), Expect = 2.3e-25, Sum P(2) = 2.3e-25
Identities = 27/52 (51%), Positives = 40/52 (76%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+ Q+LGE L PL++++ P+LA KITGMLLE+D +ELL +L+ E L +V+E
Sbjct: 525 EMQLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDE 576
Score = 117 (46.2 bits), Expect = 8.8e-15, Sum P(2) = 8.8e-15
Identities = 24/64 (37%), Positives = 38/64 (59%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+ +G+ FV F +PE+A +A +NG GSK LYV AQ+K +R+ L Q+ ++
Sbjct: 236 ENRLCRGYAFVNFDNPEDARRAAETVNGTKFGSKCLYVGRAQKKAEREQLLREQFKEKHE 295
Query: 63 NMRM 66
+M
Sbjct: 296 EQKM 299
Score = 103 (41.3 bits), Expect = 2.5e-13, Sum P(2) = 2.5e-13
Identities = 19/47 (40%), Positives = 28/47 (59%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
EDG+S+G+GFV F + A A+ +N I+ K +YV +K DR
Sbjct: 147 EDGKSRGYGFVQFEQEDAAHAAIQTLNSTIVADKEIYVGKFMKKTDR 193
Score = 70 (29.7 bits), Expect = 6.5e-10, Sum P(2) = 6.5e-10
Identities = 27/105 (25%), Positives = 49/105 (46%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQR 60
+ GRS +G+ F S ++A A+ + N ++ K + V + R D R+ + + +++
Sbjct: 59 ASSGRSLCYGYANFLSRQDANLAIEKKNNSLLNGKMIRVMWSVRAPDARRNGVGNVFVKN 118
Query: 61 ----IANMRMQQMGQLFQPGSTGGYFVPTLPQPQ-RFYGPTQMTQ 100
+ N +Q M + F G+ V TL + R YG Q Q
Sbjct: 119 LPESVTNAVLQDMFKKF--GNIVSCKVATLEDGKSRGYGFVQFEQ 161
>UNIPROTKB|H0YB75 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR002004
Pfam:PF00658 PROSITE:PS51309 SMART:SM00517 GO:GO:0005737
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AP001205
HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000522658 Bgee:H0YB75
Uniprot:H0YB75
Length = 183
Score = 277 (102.6 bits), Expect = 3.3e-24, P = 3.3e-24
Identities = 79/161 (49%), Positives = 92/161 (57%)
Query: 127 PQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNK 186
P F S R ++ Q V R + T TMGPR P A A+ + A R Y K
Sbjct: 8 PPF-STMRPASSQ-VPRVMSTQRVANTSTQTMGPR---P--AAAAAAATPAVRTVPQY-K 59
Query: 187 YP--VRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQPQEQKQMLGERLFP 244
Y VRNP EPLT++MLA+A PQEQKQMLGERLFP
Sbjct: 60 YAAGVRNP----QQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFP 115
Query: 245 LIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LIQ M+P LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 116 LIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 156
>UNIPROTKB|H0YAS6 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 SMART:SM00517
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AP001205
HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000520868
Uniprot:H0YAS6
Length = 169
Score = 276 (102.2 bits), Expect = 4.2e-24, P = 4.2e-24
Identities = 72/135 (53%), Positives = 82/135 (60%)
Query: 153 TGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNPGTXXXXXXXXXXXXXXXX 210
T TMGPR P A A+ + A R Y KY VRNP
Sbjct: 18 TSTQTMGPR---P--AAAAAAATPAVRTVPQY-KYAAGVRNP----QQHLNAQPQVTMQQ 67
Query: 211 XXXXXXXXEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELL 270
EPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL
Sbjct: 68 PAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELL 127
Query: 271 YMLEHNESLKSKVEE 285
+MLE ESL+SKV+E
Sbjct: 128 HMLESPESLRSKVDE 142
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 265 (98.3 bits), Expect = 3.8e-22, P = 3.8e-22
Identities = 67/154 (43%), Positives = 87/154 (56%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRM 66
SKGFGFVC+++P+EAT+AVTEMNGR+IG+KPLYVALAQRK+ R+A L Q+ Q+
Sbjct: 324 SKGFGFVCYTAPDEATRAVTEMNGRMIGTKPLYVALAQRKDIRRAQLEMQHQQKFKTGIR 383
Query: 67 QQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPR-WAAAPQMRPSGQTAQ-GFP 124
QQM + GS +F P PQ Y Q+ P+PR W P P GQ A +
Sbjct: 384 QQMPPTY--GSGPVFFTPAPVNPQVVY-----QQMMPRPRNWNGQPVGVPQGQYANMNYA 436
Query: 125 NIPQFRSAPRASTGQTVIRGAN---MSARPITGQ 155
++ PR + GQ G A+PI Q
Sbjct: 437 RGQPRQNGPRQNGGQPRQNGPRPDVSGAQPIPVQ 470
Score = 124 (48.7 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 26/54 (48%), Positives = 34/54 (62%)
Query: 1 MSED-GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
M++D G+SKGFGF F S E A V NG+I KP+Y AQ+K +R+A L
Sbjct: 220 MADDKGKSKGFGFANFESAEAAKNVVENENGKIFHGKPIYAGRAQKKIEREAEL 273
Score = 116 (45.9 bits), Expect = 7.5e-13, Sum P(2) = 7.5e-13
Identities = 51/164 (31%), Positives = 66/164 (40%)
Query: 128 QFRSAPRASTGQTV--IRG--ANMS-ARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTG 182
Q PR GQ V +G ANM+ AR GQ PR GP Q G +
Sbjct: 410 QMMPRPRNWNGQPVGVPQGQYANMNYAR---GQ----PRQNGPRQNGGQPRQNGPRPDVS 462
Query: 183 GYNKYPVRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTSTMLAAAQPQEQKQMLGERL 242
G PV+ T L S + ++ Q Q LGE L
Sbjct: 463 GAQPIPVQQQTTLDVAQTQQAASSAESALN--------LQSIINLPSRDQ-QNVALGEHL 513
Query: 243 FPLIQRMYPELAGKITGMLLE-IDNAELLYMLEHNESLKSKVEE 285
+PLI P+LAGKITGMLL+ + EL + + + L K+ E
Sbjct: 514 YPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADKIRE 557
Score = 93 (37.8 bits), Expect = 1.6e-09, Sum P(2) = 1.6e-09
Identities = 18/50 (36%), Positives = 33/50 (66%)
Query: 1 MSEDGRS-KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+++DG S KGFGFV + + E A KA+ ++NG +I + ++V + ++R
Sbjct: 130 VTDDGNSSKGFGFVHYETQESADKAIAKVNGMMINGQKVFVGPFKSSKER 179
Score = 46 (21.3 bits), Expect = 0.00011, Sum P(2) = 0.00010
Identities = 12/57 (21%), Positives = 29/57 (50%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS + +V + + +A +A+ +N I K + +QR RK+ + + +++ +
Sbjct: 49 RSLSYAYVNYYNGADAERALDTLNNTPIRGKACRIMWSQRDPSLRKSGVGNVFIKNL 105
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 224 (83.9 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 69/183 (37%), Positives = 93/183 (50%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G SKG GFV FS+ EA++ + EMNG+++G KPLYVALAQRKE+R+A L +Q+ Q +
Sbjct: 365 GTSKGSGFVAFSAASEASRVLNEMNGKMVGGKPLYVALAQRKEERRAKLQAQFSQ-MRPA 423
Query: 65 RMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQ-GF 123
+ +G P TGG P L Q Q FYG I QP + PQ+ P + A G
Sbjct: 424 FIPGVGPRM-PIFTGG--APGLGQ-QIFYGQGPPPIIPHQPGFGYQPQLVPGMRPAFFGG 479
Query: 124 PNIPQFRSAPRAS---TGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQ 180
P + + PR +G +R + P Q M PRG G G ++ G
Sbjct: 480 PMMQPGQQGPRPGGRRSGDGPMRHQHQQPMPYM-QPQMMPRGRGYRYPSGGRNMPD-GPM 537
Query: 181 TGG 183
GG
Sbjct: 538 PGG 540
Score = 172 (65.6 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 75/245 (30%), Positives = 106/245 (43%)
Query: 53 LASQYMQRIANMRMQ--QMGQLFQPGSTGGYF------VPTLPQPQRFYGPTQMTQIRPQ 104
LA + +R A ++ Q QM F PG G P L Q Q FYG I Q
Sbjct: 402 LAQRKEERRAKLQAQFSQMRPAFIPG-VGPRMPIFTGGAPGLGQ-QIFYGQGPPPIIPHQ 459
Query: 105 PRWAAAPQMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGG 164
P + PQ+ P + P F P GQ +G R +G M +
Sbjct: 460 PGFGYQPQLVPGMR--------PAFFGGPMMQPGQ---QGPRPGGRR-SGDGPMRHQHQQ 507
Query: 165 PMQAPGPASVSAAGRQTGGYNKYPVRNPGTXXXXXXXXXXXXXXXXXXXXXXXXEPLTS- 223
PM P + GR GY +YP + G +P+++
Sbjct: 508 PMPYMQP-QMMPRGR---GY-RYP--SGGRNMPDGPMPGGMVPVAYDMNVMPYSQPMSAG 560
Query: 224 ---TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 280
T LA A P +Q+ +LGE L+PL+ ++ E A K+TGMLLE+D E+L++LE E+L
Sbjct: 561 QLATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALN 620
Query: 281 SKVEE 285
+KV E
Sbjct: 621 AKVSE 625
Score = 130 (50.8 bits), Expect = 3.0e-20, Sum P(2) = 3.0e-20
Identities = 25/56 (44%), Positives = 37/56 (66%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
DG+S+ FGFV F +PE+A +AV +NG+ K YV AQ+K +R+ L+ +Y Q
Sbjct: 261 DGKSRCFGFVNFENPEDAARAVEALNGKKFDDKEWYVGKAQKKSERELELSRRYEQ 316
Score = 105 (42.0 bits), Expect = 1.2e-17, Sum P(2) = 1.2e-17
Identities = 20/67 (29%), Positives = 43/67 (64%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+S+G+GFV F + + A A+ ++NG+++ K ++V RKE+R++ A+ M + N+
Sbjct: 171 GQSRGYGFVQFDTEDSAKNAIEKLNGKVLNDKQIFVGPFLRKEERES--AADKM-KFTNV 227
Query: 65 RMQQMGQ 71
++ + +
Sbjct: 228 YVKNLSE 234
Score = 64 (27.6 bits), Expect = 2.2e-13, Sum P(2) = 2.2e-13
Identities = 12/56 (21%), Positives = 33/56 (58%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
S G+G+V +S+ ++A KA+ ++N + K + + + R R++ + + +++ +
Sbjct: 86 SLGYGYVNYSNTDDAEKAMQKLNYSYLNGKMIRITYSSRDSSARRSGVGNLFVKNL 141
>UNIPROTKB|Q4VXT4 [details] [associations]
symbol:PABPC1L "HCG2019100, isoform CRA_b" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 SMART:SM00517
EMBL:AL008725 EMBL:CH471077 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797
IPI:IPI00640219 SMR:Q4VXT4 STRING:Q4VXT4 Ensembl:ENST00000372824
UCSC:uc002xmw.2 HOGENOM:HOG000136546 HOVERGEN:HBG093144
Uniprot:Q4VXT4
Length = 168
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 46/67 (68%), Positives = 57/67 (85%)
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ES
Sbjct: 83 EPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPES 142
Query: 279 LKSKVEE 285
L +K++E
Sbjct: 143 LHAKIDE 149
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 232 (86.7 bits), Expect = 1.9e-18, P = 1.9e-18
Identities = 65/165 (39%), Positives = 85/165 (51%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E G+SKGFGFVC+++PEEA KAVTEMN R++ KPLYVALAQRKE R++ L +Q R
Sbjct: 399 EQGKSKGFGFVCYTTPEEANKAVTEMNQRMLAGKPLYVALAQRKEVRRSQLEAQIQAR-N 457
Query: 63 NMRMQQM-----G-QLFQPGSTGG--YFVPTLPQPQRFYG---PTQMTQIRPQPRWAAAP 111
R+QQ G Q G+TG Y P P G P P P + P
Sbjct: 458 QFRLQQQVAAAAGIPAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVPGHNGPMPMYPGMP 517
Query: 112 QMRPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQS 156
P+G A G+P + P A ++ G+ SA P ++
Sbjct: 518 TQFPAGGPAPGYPGMNARGPVP-AQGRPMMMPGSVPSAGPAEAEA 561
Score = 155 (59.6 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 61/190 (32%), Positives = 85/190 (44%)
Query: 100 QIRPQPRWAAAPQMRPSGQTAQGFPNI--PQFRSAPRASTGQ--TVIRGANMSARPITGQ 155
Q R Q + AAA + P+ Q P I P P A G+ ++ G N G
Sbjct: 458 QFRLQQQVAAAAGI-PAVQYGATGPLIYGPGGYPIPAAVNGRGMPMVPGHNGPMPMYPGM 516
Query: 156 STMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTXXXXXXXXXXXXXXXXXXXXX 215
T P GGP APG ++A G P+ PG+
Sbjct: 517 PTQFP-AGGP--APGYPGMNARGPVPA--QGRPMMMPGSVPSAGPAEAEAVPAVPGMP-- 569
Query: 216 XXXEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEH 275
E T+ LAA + +KQ+LGE L+P + +L+GKITGMLLE+ N+ELL +LE
Sbjct: 570 ---ERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLED 626
Query: 276 NESLKSKVEE 285
+ +L +V E
Sbjct: 627 DSALNERVNE 636
Score = 117 (46.2 bits), Expect = 1.4e-16, Sum P(2) = 1.4e-16
Identities = 27/72 (37%), Positives = 42/72 (58%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RI 61
++ + +GFGFV +++ E A KAV E+N + K LYV AQ+K +R+ L +Y Q ++
Sbjct: 296 QNDKPRGFGFVNYANHECAQKAVDELNDKEYKGKKLYVGRAQKKHEREEELRKRYEQMKL 355
Query: 62 ANMRMQQMGQLF 73
M Q LF
Sbjct: 356 EKMNKYQGVNLF 367
Score = 98 (39.6 bits), Expect = 1.3e-14, Sum P(2) = 1.3e-14
Identities = 25/81 (30%), Positives = 44/81 (54%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQRK-----EDRKAHL 53
+ E G +KG+GFV F S E A A+ +NG ++ K +YV +++R+ E KA+
Sbjct: 201 VDELGNAKGYGFVHFDSVESANAAIEHVNGMLLNDKKVYVGHHVSRRERQSKVEALKANF 260
Query: 54 ASQYMQRI-ANMRMQQMGQLF 73
+ Y++ + + Q+ LF
Sbjct: 261 TNVYIKNLDTEITEQEFSDLF 281
Score = 70 (29.7 bits), Expect = 1.0e-11, Sum P(2) = 1.0e-11
Identities = 16/57 (28%), Positives = 31/57 (54%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED-RKAHLASQYMQRI 61
RS G+ +V F + E+ KA+ E+N +I +P + +QR RK + +++ +
Sbjct: 119 RSLGYAYVNFHNMEDGEKALDELNYTLIKGRPCRIMWSQRDPSLRKMGTGNVFIKNL 175
>UNIPROTKB|Q4VXT6 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 EMBL:AL008725
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AL109839
UniGene:Hs.641481 HGNC:HGNC:15797 HOGENOM:HOG000136546
HOVERGEN:HBG093144 IPI:IPI00641237 SMR:Q4VXT6 STRING:Q4VXT6
Ensembl:ENST00000372819 UCSC:uc002xmx.3 Uniprot:Q4VXT6
Length = 149
Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
Identities = 45/65 (69%), Positives = 55/65 (84%)
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ES
Sbjct: 83 EPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPES 142
Query: 279 LKSKV 283
L +K+
Sbjct: 143 LHAKI 147
>UNIPROTKB|H0Y386 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 EMBL:AL008725
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AL109839
HGNC:HGNC:15797 ChiTaRS:PABPC1L ProteinModelPortal:H0Y386
Ensembl:ENST00000372826 Uniprot:H0Y386
Length = 152
Score = 219 (82.2 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 45/66 (68%), Positives = 55/66 (83%)
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ES
Sbjct: 65 EPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPES 124
Query: 279 LKSKVE 284
L +K +
Sbjct: 125 LHAKAQ 130
>UNIPROTKB|Q4VXT5 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 EMBL:AL008725
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AL109839
UniGene:Hs.641481 HGNC:HGNC:15797 HOGENOM:HOG000136546
HOVERGEN:HBG093144 IPI:IPI00643455 SMR:Q4VXT5 STRING:Q4VXT5
Ensembl:ENST00000217075 Uniprot:Q4VXT5
Length = 171
Score = 217 (81.4 bits), Expect = 7.5e-18, P = 7.5e-18
Identities = 45/64 (70%), Positives = 54/64 (84%)
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLAAA EQKQM+GERL+PLI ++ +LAGKITGMLLEIDN+ELL MLE ES
Sbjct: 83 EPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPES 142
Query: 279 LKSK 282
L +K
Sbjct: 143 LHAK 146
>UNIPROTKB|H0YAS7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 SMART:SM00517
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AP001205
HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000517990 Bgee:H0YAS7
Uniprot:H0YAS7
Length = 136
Score = 199 (75.1 bits), Expect = 6.0e-16, P = 6.0e-16
Identities = 45/67 (67%), Positives = 53/67 (79%)
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLA+A PQEQKQML M+P LAGKITGMLLEIDN+ELL+MLE ES
Sbjct: 52 EPLTASMLASAPPQEQKQMLA---------MHPTLAGKITGMLLEIDNSELLHMLESPES 102
Query: 279 LKSKVEE 285
L+SKV+E
Sbjct: 103 LRSKVDE 109
>UNIPROTKB|P0CB38 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 TIGRFAMs:TIGR01628 EMBL:AC015631
EMBL:BX648831 IPI:IPI00885166 UniGene:Hs.49889
ProteinModelPortal:P0CB38 SMR:P0CB38 PhosphoSite:P0CB38
DMDM:259515737 PaxDb:P0CB38 PRIDE:P0CB38 Ensembl:ENST00000421491
UCSC:uc010ioe.3 GeneCards:GC04M135117 HGNC:HGNC:31955
neXtProt:NX_P0CB38 eggNOG:NOG246493 OrthoDB:EOG4M398T NextBio:83098
Bgee:P0CB38 Genevestigator:P0CB38 Uniprot:P0CB38
Length = 370
Score = 192 (72.6 bits), Expect = 1.1e-14, P = 1.1e-14
Identities = 35/45 (77%), Positives = 42/45 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+SKGFG +CFSSPE+ATKA+TEMNGRI+GSKPL +ALAQR
Sbjct: 325 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 369
Score = 139 (54.0 bits), Expect = 5.4e-07, P = 5.4e-07
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++V AQ+K +R+A L + Q
Sbjct: 227 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 281
Score = 111 (44.1 bits), Expect = 0.00093, P = 0.00093
Identities = 23/70 (32%), Positives = 42/70 (60%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
MS+D SKG+ FV F + A +A+ EMNG+++ ++V + ++DR+A L S+ +
Sbjct: 130 MSDDQGSKGYAFVHFQNQSAADRAIEEMNGKLLKGCKVFVGRFKNRKDREAELRSKASE- 188
Query: 61 IANMRMQQMG 70
N+ ++ G
Sbjct: 189 FTNVYIKNFG 198
>UNIPROTKB|J3KTH5 [details] [associations]
symbol:PABPC4L "Polyadenylate-binding protein 4-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126 TIGRFAMs:TIGR01628
EMBL:AC015631 UniGene:Hs.49889 HGNC:HGNC:31955
RefSeq:NP_001108206.2 ProteinModelPortal:J3KTH5
Ensembl:ENST00000529122 GeneID:132430 KEGG:hsa:132430 CTD:132430
Uniprot:J3KTH5
Length = 428
Score = 192 (72.6 bits), Expect = 1.7e-14, P = 1.7e-14
Identities = 35/45 (77%), Positives = 42/45 (93%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E+G+SKGFG +CFSSPE+ATKA+TEMNGRI+GSKPL +ALAQR
Sbjct: 383 MQEEGQSKGFGLICFSSPEDATKAMTEMNGRILGSKPLSIALAQR 427
Score = 139 (54.0 bits), Expect = 7.2e-07, P = 7.2e-07
Identities = 29/55 (52%), Positives = 37/55 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G+SKGFGFV F S E A KAV EMNGR I + ++V AQ+K +R+A L + Q
Sbjct: 285 GKSKGFGFVSFDSHEAAKKAVEEMNGRDINGQLIFVGRAQKKVERQAELKQMFEQ 339
>UNIPROTKB|F1RKX5 [details] [associations]
symbol:F1RKX5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR002004
Pfam:PF00658 PROSITE:PS51309 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:CU915426
Ensembl:ENSSSCT00000008676 Uniprot:F1RKX5
Length = 157
Score = 183 (69.5 bits), Expect = 3.0e-14, P = 3.0e-14
Identities = 41/65 (63%), Positives = 51/65 (78%)
Query: 219 EPLTSTMLA-AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 277
EP+T++MLA A++ QEQKQMLG+ LF IQ M+ LAGKITGMLLEIDN+ELL+ E E
Sbjct: 70 EPVTASMLAIASRHQEQKQMLGKHLFLFIQTMHANLAGKITGMLLEIDNSELLHTPEPPE 129
Query: 278 SLKSK 282
+L K
Sbjct: 130 TLLPK 134
>UNIPROTKB|Q5JQF3 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
HOVERGEN:HBG002295 EMBL:AL662874 UniGene:Hs.246590 HGNC:HGNC:13629
IPI:IPI00647470 SMR:Q5JQF3 STRING:Q5JQF3 Ensembl:ENST00000373105
HOGENOM:HOG000138175 OrthoDB:EOG4X3H3C Uniprot:Q5JQF3
Length = 218
Score = 165 (63.1 bits), Expect = 2.8e-12, P = 2.8e-12
Identities = 33/46 (71%), Positives = 37/46 (80%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q +
Sbjct: 170 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 215
Score = 121 (47.7 bits), Expect = 1.7e-05, P = 1.7e-05
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A L ++
Sbjct: 72 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 124
>UNIPROTKB|H0YAW6 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0005737 "cytoplasm" evidence=IDA]
GO:GO:0005737 EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1
Ensembl:ENST00000517403 Uniprot:H0YAW6
Length = 187
Score = 150 (57.9 bits), Expect = 1.6e-10, P = 1.6e-10
Identities = 58/179 (32%), Positives = 80/179 (44%)
Query: 36 KPLYVALAQRKEDRKAHLASQY--MQRIANMRMQQMGQL----------FQPGSTGGYFV 83
K +YV AQ+K +R+ L ++ M++ R Q+M + +QP GYF+
Sbjct: 4 KQIYVGRAQKKVERQTELKRKFEQMKQDRITRYQRMASVRAVPNPVINPYQPAPPSGYFM 63
Query: 84 PTLPQPQR---FYGPTQMTQIRPQPRWAAA-----PQMRPSGQTAQGFPNIPQFRSAPRA 135
+PQ Q +Y P+Q+ Q+RP PRW A P G P P F S R
Sbjct: 64 AAIPQTQNRAAYYPPSQIAQLRPSPRWTAQGARPHPFQNMPGAIRPAAPR-PPF-STMRP 121
Query: 136 STGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYP--VRNP 192
++ Q V R + T TMGPR P A A+ + A R Y KY VRNP
Sbjct: 122 ASSQ-VPRVMSTQRVANTSTQTMGPR---P--AAAAAAATPAVRTVPQY-KYAAGVRNP 173
>UNIPROTKB|H0YER0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AL845289
HGNC:HGNC:8557 ChiTaRS:PABPC4 Ensembl:ENST00000530186
Uniprot:H0YER0
Length = 68
Score = 148 (57.2 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 31/41 (75%), Positives = 36/41 (87%)
Query: 245 LIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 2 LIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 42
>UNIPROTKB|Q96DU9 [details] [associations]
symbol:PABPC5 "Polyadenylate-binding protein 5"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:CH471115 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AJ278963 EMBL:AK290105
EMBL:AL662874 EMBL:BC063113 EMBL:AL122118 IPI:IPI00061206
PIR:T34543 RefSeq:NP_543022.1 UniGene:Hs.246590
ProteinModelPortal:Q96DU9 SMR:Q96DU9 IntAct:Q96DU9 STRING:Q96DU9
PhosphoSite:Q96DU9 DMDM:28201851 PaxDb:Q96DU9 PRIDE:Q96DU9
DNASU:140886 Ensembl:ENST00000312600 GeneID:140886 KEGG:hsa:140886
UCSC:uc004efg.3 CTD:140886 GeneCards:GC0XP090689 HGNC:HGNC:13629
HPA:HPA000164 HPA:HPA000165 MIM:300407 neXtProt:NX_Q96DU9
PharmGKB:PA32884 InParanoid:Q96DU9 OMA:FSEYGPT PhylomeDB:Q96DU9
GenomeRNAi:140886 NextBio:84542 ArrayExpress:Q96DU9 Bgee:Q96DU9
CleanEx:HS_PABPC5 Genevestigator:Q96DU9 GermOnline:ENSG00000174740
Uniprot:Q96DU9
Length = 382
Score = 165 (63.1 bits), Expect = 4.4e-10, P = 4.4e-10
Identities = 33/46 (71%), Positives = 37/46 (80%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
M E G+ KGFG VCFSS EEATKAV EMNGRI+GSKPL+V L Q +
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEATKAVDEMNGRIVGSKPLHVTLGQAR 379
Score = 121 (47.7 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A L ++
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
>TAIR|locus:2009036 [details] [associations]
symbol:PAB1 "poly(A) binding protein 1" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002684 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
KO:K13126 IPI:IPI00540782 RefSeq:NP_174676.2 UniGene:At.51928
ProteinModelPortal:F4HT49 SMR:F4HT49 PRIDE:F4HT49
EnsemblPlants:AT1G34140.1 GeneID:840313 KEGG:ath:AT1G34140
OMA:VLSIRIC ArrayExpress:F4HT49 Uniprot:F4HT49
Length = 407
Score = 165 (63.1 bits), Expect = 5.0e-10, P = 5.0e-10
Identities = 31/54 (57%), Positives = 44/54 (81%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
+G SKG GFV FS+ EEA+KA+ +MNG+++G+KP+YV+LAQ KE K HL +Q+
Sbjct: 259 NGISKGVGFVEFSTSEEASKAMLKMNGKMVGNKPIYVSLAQCKEQHKLHLQTQF 312
Score = 113 (44.8 bits), Expect = 0.00064, P = 0.00064
Identities = 23/59 (38%), Positives = 38/59 (64%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY-MQRI 61
+G+S+ FGFV F E A A+ +MNG ++ K L+V AQRK +R L +++ +++I
Sbjct: 155 EGKSRRFGFVNFEKAEAAVTAIEKMNGVVVDEKELHVGRAQRKTNRTEDLKAKFELEKI 213
>RGD|1559517 [details] [associations]
symbol:Pabpc4l "poly(A) binding protein, cytoplasmic 4-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 RGD:1559517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
TIGRFAMs:TIGR01628 OrthoDB:EOG4M398T GeneTree:ENSGT00640000091232
CTD:132430 EMBL:CH474091 IPI:IPI00367682 RefSeq:NP_001099899.1
UniGene:Rn.218503 Ensembl:ENSRNOT00000017012 GeneID:295010
KEGG:rno:295010 UCSC:RGD:1559517 NextBio:638845 Uniprot:D3ZGA4
Length = 370
Score = 162 (62.1 bits), Expect = 9.5e-10, P = 9.5e-10
Identities = 30/45 (66%), Positives = 36/45 (80%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
M E G+SKGFG +CF SPE A KA+ EMNGRI+GSKPL +AL Q+
Sbjct: 325 MQEAGQSKGFGLICFFSPEAAAKAMAEMNGRILGSKPLNIALGQK 369
Score = 128 (50.1 bits), Expect = 1.0e-05, P = 1.0e-05
Identities = 28/70 (40%), Positives = 43/70 (61%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ-RIAN 63
G+SK FGFV F S + A AV +MNGR I + ++V AQ+K +R+A L + Q +
Sbjct: 227 GKSKRFGFVSFDSHKAAKNAVEDMNGRDINGQTIFVGRAQKKVERQAELKEMFEQMKKER 286
Query: 64 MRMQQMGQLF 73
+R +Q +L+
Sbjct: 287 IRARQAAKLY 296
>UNIPROTKB|H0YAP2 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000519622
Uniprot:H0YAP2
Length = 131
Score = 143 (55.4 bits), Expect = 1.1e-09, P = 1.1e-09
Identities = 28/57 (49%), Positives = 38/57 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L ++ Q
Sbjct: 24 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRKFEQ 80
>UNIPROTKB|F1N4Q4 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
KO:K13126 TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT EMBL:DAAA02070194 IPI:IPI00700504
RefSeq:NP_001179218.1 UniGene:Bt.60242 ProteinModelPortal:F1N4Q4
Ensembl:ENSBTAT00000026566 GeneID:511286 KEGG:bta:511286
NextBio:20869865 Uniprot:F1N4Q4
Length = 382
Score = 160 (61.4 bits), Expect = 1.8e-09, P = 1.8e-09
Identities = 32/46 (69%), Positives = 36/46 (78%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
M E G+ KGFG +CFSS EEATKAV EMNGRI+GSKPL V L Q +
Sbjct: 334 MVEVGQGKGFGVICFSSFEEATKAVDEMNGRIVGSKPLQVTLGQAR 379
Score = 121 (47.7 bits), Expect = 7.0e-05, P = 7.0e-05
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A L ++
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSIDGKVLYVGRAQKKIERLAELRRRF 288
>UNIPROTKB|F1PQV8 [details] [associations]
symbol:PABPC5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676 KO:K13126
GeneTree:ENSGT00640000091232 CTD:140886 OMA:FSEYGPT
EMBL:AAEX03026633 RefSeq:XP_549122.2 ProteinModelPortal:F1PQV8
Ensembl:ENSCAFT00000027652 GeneID:492002 KEGG:cfa:492002
Uniprot:F1PQV8
Length = 382
Score = 156 (60.0 bits), Expect = 5.5e-09, P = 5.5e-09
Identities = 31/46 (67%), Positives = 36/46 (78%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
M E G+ KGFG VCFSS E+ATKAV EMNGR +GSKPL+V L Q +
Sbjct: 334 MVEVGQGKGFGVVCFSSFEDATKAVDEMNGRTVGSKPLHVTLGQAR 379
Score = 122 (48.0 bits), Expect = 5.4e-05, P = 5.4e-05
Identities = 25/53 (47%), Positives = 36/53 (67%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G+SKGFGFV + + E A KAV +++G+ I K LYV AQ+K +R A L ++
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLDLHGKSINGKVLYVGRAQKKIERLAELRRRF 288
>RGD|2322083 [details] [associations]
symbol:LOC100360473 "poly A binding protein, cytoplasmic 5-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 RGD:2322083 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 KO:K13126 EMBL:CH473969 GeneTree:ENSGT00640000091232
CTD:140886 OMA:FSEYGPT IPI:IPI00369761 RefSeq:NP_001103836.1
UniGene:Rn.218841 Ensembl:ENSRNOT00000004462 GeneID:688518
KEGG:rno:688518 OrthoDB:EOG4DZ1VH NextBio:736678 Uniprot:D4A5H0
Length = 382
Score = 153 (58.9 bits), Expect = 1.3e-08, P = 1.3e-08
Identities = 30/46 (65%), Positives = 36/46 (78%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
M E G+ KGFG VCFSS EEA+KAV EMNGR++GSK L+V L Q +
Sbjct: 334 MMEVGQGKGFGVVCFSSFEEASKAVNEMNGRVVGSKTLHVTLGQAR 379
Score = 115 (45.5 bits), Expect = 0.00035, P = 0.00035
Identities = 25/53 (47%), Positives = 35/53 (66%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQY 57
G+SKGFGFV + + E A KAV E++G+ I K L V AQ+K +R A L ++
Sbjct: 236 GKSKGFGFVRYETHEAAQKAVLELHGKSIDGKVLCVGRAQKKIERLAELRRRF 288
>TAIR|locus:2094922 [details] [associations]
symbol:PAB6 "poly(A) binding protein 6" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0003743 "translation
initiation factor activity" evidence=ISS] [GO:0006413
"translational initiation" evidence=TAS] [GO:0016071 "mRNA
metabolic process" evidence=TAS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0016071 GO:GO:0000166
GO:GO:0006413 Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AB023046
EMBL:AC001645 eggNOG:COG0724 KO:K13126 HOGENOM:HOG000217922
HSSP:P11940 IPI:IPI00530520 RefSeq:NP_188259.1 UniGene:At.51274
ProteinModelPortal:O04319 SMR:O04319 EnsemblPlants:AT3G16380.1
GeneID:820885 KEGG:ath:AT3G16380 TAIR:At3g16380 InParanoid:O04319
OMA:CKVVEEN PhylomeDB:O04319 ProtClustDB:CLSN2913349
Genevestigator:O04319 Uniprot:O04319
Length = 537
Score = 153 (58.9 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 31/57 (54%), Positives = 41/57 (71%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E+GRSKGFGFVCFS+ EE+ +A +NG ++ KP+ V +A+RKEDR L QY Q
Sbjct: 339 ENGRSKGFGFVCFSNCEESKQAKRYLNGFLVDGKPIVVRVAERKEDRIKRL-QQYFQ 394
Score = 125 (49.1 bits), Expect = 4.2e-05, P = 4.2e-05
Identities = 29/68 (42%), Positives = 42/68 (61%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR-IA- 62
GRS+GFGFV F +PE A KA+ + G +GSK L+V A +K++R+ L ++ IA
Sbjct: 239 GRSRGFGFVNFCNPENAKKAMESLCGLQLGSKKLFVGKALKKDERREMLKQKFSDNFIAK 298
Query: 63 -NMRMQQM 69
NMR +
Sbjct: 299 PNMRWSNL 306
>TAIR|locus:2090654 [details] [associations]
symbol:MPC "maternally expressed pab C-terminal"
species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006417 "regulation of translation" evidence=TAS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR002004 Pfam:PF00658
PROSITE:PS51309 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006417 GO:GO:0003723 EMBL:AB025624 Gene3D:1.10.1900.10
SUPFAM:SSF63570 HSSP:P11940 EMBL:BT024667 IPI:IPI00529629
RefSeq:NP_188566.1 UniGene:At.50202 ProteinModelPortal:Q9LT82
SMR:Q9LT82 STRING:Q9LT82 EnsemblPlants:AT3G19350.1 GeneID:821469
KEGG:ath:AT3G19350 TAIR:At3g19350 eggNOG:NOG272598
HOGENOM:HOG000153094 InParanoid:Q9LT82 OMA:VEELEPQ PhylomeDB:Q9LT82
ProtClustDB:CLSN2915372 Genevestigator:Q9LT82 Uniprot:Q9LT82
Length = 103
Score = 131 (51.2 bits), Expect = 2.4e-08, P = 2.4e-08
Identities = 24/60 (40%), Positives = 43/60 (71%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
LA+ P+EQ+ ++GE LF +++ + P+ A KITGM+LE+D ++L++L ++ K V+E
Sbjct: 23 LASLPPKEQRDLIGETLFFMVEELEPQFAPKITGMILELDQDKVLHLLVTPKAFKEMVKE 82
>UNIPROTKB|H0YCC8 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AL365277 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000474378 Uniprot:H0YCC8
Length = 197
Score = 138 (53.6 bits), Expect = 3.5e-08, P = 3.5e-08
Identities = 27/56 (48%), Positives = 39/56 (69%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
+G+SKGFGFV + E+A KAV EMNG+ I K ++V AQ+K +R+A L ++ Q
Sbjct: 140 NGKSKGFGFVSYEKHEDANKAVEEMNGKEISGKIIFVGRAQKKVERQAELKRKFEQ 195
>DICTYBASE|DDB_G0290745 [details] [associations]
symbol:pabpc1B "putative polyadenylate binding
protein (PABP)" species:44689 "Dictyostelium discoideum"
[GO:0003723 "RNA binding" evidence=IEA] [GO:0003676 "nucleic acid
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=ISS]
[GO:0006378 "mRNA polyadenylation" evidence=ISS] [GO:0005737
"cytoplasm" evidence=IEA;ISS] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0290745 GO:GO:0005634 GO:GO:0005737
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0006378
GenomeReviews:CM000154_GR eggNOG:COG0724 EMBL:AAFI02000169
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
RefSeq:XP_001134510.1 ProteinModelPortal:Q1ZXC2 SMR:Q1ZXC2
EnsemblProtists:DDB0233386 GeneID:8627795 KEGG:ddi:DDB_G0290745
OMA:NAIASIH Uniprot:Q1ZXC2
Length = 814
Score = 120 (47.3 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 42/169 (24%), Positives = 70/169 (41%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+ R+KGFGF+ FS +EA KA+ +NG GSK + V+ + + ++ + + +I
Sbjct: 505 ENARNKGFGFISFSEIQEAQKALDSLNGFTFGSKQIQVSFSNKDNNQINNKLNGNSTKIT 564
Query: 63 NMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYGPTQMTQIRPQ-PRWAAAPQMRPSGQTAQ 121
+ Q G++ + LP R+ I P + PQ + S ++Q
Sbjct: 565 K-------NIIQGGASASQYTGYLPI-NRYQQHLPHQHINPMYTQQPYFPQQQQSSSSSQ 616
Query: 122 GFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG 170
+ PQ S+P G T N +T + P A G
Sbjct: 617 PSSSQPQ-PSSPSHLNGNTTTTSPNTRYSKTLNGTTPFKKSNLPQNANG 664
Score = 89 (36.4 bits), Expect = 0.00016, Sum P(2) = 0.00016
Identities = 19/47 (40%), Positives = 29/47 (61%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
E G SKG+G+V F + + A KA+ ++NG +I KP+ V K +R
Sbjct: 308 EKGISKGYGYVHFETNDSAEKAIEKVNGTLILGKPINVERFVSKVER 354
Score = 78 (32.5 bits), Expect = 4.9e-08, Sum P(2) = 4.9e-08
Identities = 20/69 (28%), Positives = 37/69 (53%)
Query: 221 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYP---ELAGKITGMLLE-IDNAELLYMLEHN 276
+T + A +E + LG ++ L+ Y ELA KI GM+++ + + L+ + N
Sbjct: 735 ITLEFITNATAEEATETLGSEVYNLVLAKYNNNIELAAKIAGMIVDAVPEHKELFEIISN 794
Query: 277 ESLKSKVEE 285
++SK+EE
Sbjct: 795 GQIQSKIEE 803
>UNIPROTKB|H3BNY3 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL359757 TIGRFAMs:TIGR01628
HGNC:HGNC:8556 ProteinModelPortal:H3BNY3 SMR:H3BNY3
Ensembl:ENST00000569397 Bgee:H3BNY3 Uniprot:H3BNY3
Length = 347
Score = 141 (54.7 bits), Expect = 2.7e-07, P = 2.7e-07
Identities = 28/57 (49%), Positives = 37/57 (64%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
E G+SKGFGFV F E+A KAV EMNG+ + K +YV AQ+K +R+ L + Q
Sbjct: 226 ESGKSKGFGFVSFERHEDAQKAVDEMNGKELNGKQIYVGRAQKKVERQTELKRTFEQ 282
>UNIPROTKB|E7ET84 [details] [associations]
symbol:UBR5 "E3 ubiquitin-protein ligase UBR5" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS50237 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 GO:GO:0016567 GO:GO:0003723
GO:GO:0005622 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 ChiTaRS:UBR5 EMBL:AP002907 HGNC:HGNC:16806
EMBL:AP002981 IPI:IPI00977666 ProteinModelPortal:E7ET84 SMR:E7ET84
Ensembl:ENST00000518205 ArrayExpress:E7ET84 Bgee:E7ET84
Uniprot:E7ET84
Length = 527
Score = 140 (54.3 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 123 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 173
>UNIPROTKB|I3LGM1 [details] [associations]
symbol:LOC100738301 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS50237 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 GO:GO:0016567 GO:GO:0003723
GO:GO:0005622 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 GeneTree:ENSGT00640000091448 EMBL:CU207279
Ensembl:ENSSSCT00000023965 OMA:GRPRITH Uniprot:I3LGM1
Length = 1000
Score = 140 (54.3 bits), Expect = 1.9e-06, P = 1.9e-06
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 596 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 646
>UNIPROTKB|K7GPI8 [details] [associations]
symbol:LOC100738301 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS50237 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 GeneTree:ENSGT00640000091448 EMBL:CU207279
Ensembl:ENSSSCT00000035758 Uniprot:K7GPI8
Length = 1585
Score = 140 (54.3 bits), Expect = 3.2e-06, P = 3.2e-06
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 1181 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 1231
>UNIPROTKB|J9P5M9 [details] [associations]
symbol:UBR5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 InterPro:IPR003126 Pfam:PF00658 Pfam:PF02207
PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309 SMART:SM00119
SMART:SM00517 GO:GO:0008270 GO:GO:0016567 GO:GO:0003723
GO:GO:0005622 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 GeneTree:ENSGT00640000091448 InterPro:IPR013993
SMART:SM00396 EMBL:AAEX03008693 EMBL:AAEX03008694
Ensembl:ENSCAFT00000047363 Uniprot:J9P5M9
Length = 2307
Score = 140 (54.3 bits), Expect = 4.9e-06, P = 4.9e-06
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 1903 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 1953
>POMBASE|SPAC343.07 [details] [associations]
symbol:mug28 "RNA-binding protein Mug28" species:4896
"Schizosaccharomyces pombe" [GO:0003723 "RNA binding" evidence=ISM]
[GO:0005619 "ascospore wall" evidence=IDA] [GO:0005628 "prospore
membrane" evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA]
[GO:0030437 "ascospore formation" evidence=IMP] [GO:0031321
"ascospore-type prospore assembly" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
PomBase:SPAC343.07 GO:GO:0007126 GO:GO:0005737 EMBL:CU329670
GenomeReviews:CU329670_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0005628 GO:GO:0005619 eggNOG:COG0724
GO:GO:0031321 PIR:T38656 RefSeq:NP_593427.1 HSSP:Q60900
ProteinModelPortal:Q9UT83 STRING:Q9UT83 EnsemblFungi:SPAC343.07.1
GeneID:2543165 KEGG:spo:SPAC343.07 OMA:YTHIVER OrthoDB:EOG447K4G
NextBio:20804191 Uniprot:Q9UT83
Length = 609
Score = 132 (51.5 bits), Expect = 8.1e-06, P = 8.1e-06
Identities = 25/53 (47%), Positives = 37/53 (69%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
SKG+GFV FS P EA +A+ +NG + G K L+V A+++EDRK L++ + Q
Sbjct: 461 SKGYGFVSFSHPFEAVQAINTLNGVLFGKKRLFVNYAEKREDRKKRLSAIFSQ 513
>RGD|621236 [details] [associations]
symbol:Ubr5 "ubiquitin protein ligase E3 component n-recognin 5"
species:10116 "Rattus norvegicus" [GO:0000209 "protein
polyubiquitination" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA;IBA;TAS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0005737 "cytoplasm"
evidence=IBA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=ISO;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=TAS] [GO:0033160 "positive regulation of
protein import into nucleus, translocation" evidence=ISO]
[GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=ISO]
[GO:0035413 "positive regulation of catenin import into nucleus"
evidence=ISO] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IBA]
[GO:0043130 "ubiquitin binding" evidence=IEA] [GO:0050847
"progesterone receptor signaling pathway" evidence=ISO;IBA]
[GO:0090263 "positive regulation of canonical Wnt receptor
signaling pathway" evidence=ISO] [GO:1901315 "negative regulation
of histone H2A K63-linked ubiquitination" evidence=ISO;ISS]
[GO:2000780 "negative regulation of double-strand break repair"
evidence=ISO;ISS] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 InterPro:IPR003126 InterPro:IPR024725
Pfam:PF00658 Pfam:PF02207 Pfam:PF11547 PROSITE:PS50237
PROSITE:PS51157 PROSITE:PS51309 SMART:SM00119 SMART:SM00517
UniPathway:UPA00143 RGD:621236 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0008270 GO:GO:0006281 GO:GO:0006974
GO:GO:0003723 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
GO:GO:0004842 GO:GO:0090263 GO:GO:0000209 GO:GO:0042787
GO:GO:0035413 GO:GO:0034450 GO:GO:0033160 Gene3D:1.10.1900.10
SUPFAM:SSF63570 SUPFAM:SSF56204 eggNOG:COG5021 InterPro:IPR013993
SMART:SM00396 GO:GO:0050847 GO:GO:2000780 GO:GO:1901315 PDB:3NTW
PDBsum:3NTW HOGENOM:HOG000046848 OrthoDB:EOG4QVCB2 EMBL:X64411
IPI:IPI00768617 PIR:S22659 UniGene:Rn.54812 STRING:Q62671
PhosphoSite:Q62671 PRIDE:Q62671 UCSC:RGD:621236 InParanoid:Q62671
ArrayExpress:Q62671 Genevestigator:Q62671
GermOnline:ENSRNOG00000006816 Uniprot:Q62671
Length = 2788
Score = 143 (55.4 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++VEE
Sbjct: 2384 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEE 2434
Score = 41 (19.5 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 135 ASTGQTVIRGANMSARP--ITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRN 191
+ TG+T R S P ++G T+G G + + + V +G + G + R+
Sbjct: 86 SGTGRTS-RPGRTSDSPWFLSGSETLGRLAGNTLGSRWSSGVGGSGGGSSGRSSAGARD 143
Score = 36 (17.7 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 151 PITGQSTMGPRGGG--PMQA--PGPAS 173
P G T GGG P + PGP++
Sbjct: 1034 PAVGSLTTAATGGGQGPSTSTIPGPST 1060
>UNIPROTKB|Q62671 [details] [associations]
symbol:Ubr5 "E3 ubiquitin-protein ligase UBR5"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043130 "ubiquitin binding" evidence=IEA] Pfam:PF00632
InterPro:IPR000569 InterPro:IPR002004 InterPro:IPR003126
InterPro:IPR024725 Pfam:PF00658 Pfam:PF02207 Pfam:PF11547
PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309 SMART:SM00119
SMART:SM00517 UniPathway:UPA00143 RGD:621236 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 GO:GO:0006281
GO:GO:0006974 GO:GO:0003723 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 GO:GO:0090263 GO:GO:0000209
GO:GO:0042787 GO:GO:0035413 GO:GO:0034450 GO:GO:0033160
Gene3D:1.10.1900.10 SUPFAM:SSF63570 SUPFAM:SSF56204 eggNOG:COG5021
InterPro:IPR013993 SMART:SM00396 GO:GO:0050847 GO:GO:2000780
GO:GO:1901315 PDB:3NTW PDBsum:3NTW HOGENOM:HOG000046848
OrthoDB:EOG4QVCB2 EMBL:X64411 IPI:IPI00768617 PIR:S22659
UniGene:Rn.54812 STRING:Q62671 PhosphoSite:Q62671 PRIDE:Q62671
UCSC:RGD:621236 InParanoid:Q62671 ArrayExpress:Q62671
Genevestigator:Q62671 GermOnline:ENSRNOG00000006816 Uniprot:Q62671
Length = 2788
Score = 143 (55.4 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++VEE
Sbjct: 2384 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEE 2434
Score = 41 (19.5 bits), Expect = 9.3e-06, Sum P(2) = 9.3e-06
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 135 ASTGQTVIRGANMSARP--ITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRN 191
+ TG+T R S P ++G T+G G + + + V +G + G + R+
Sbjct: 86 SGTGRTS-RPGRTSDSPWFLSGSETLGRLAGNTLGSRWSSGVGGSGGGSSGRSSAGARD 143
Score = 36 (17.7 bits), Expect = 3.0e-05, Sum P(2) = 3.0e-05
Identities = 10/27 (37%), Positives = 13/27 (48%)
Query: 151 PITGQSTMGPRGGG--PMQA--PGPAS 173
P G T GGG P + PGP++
Sbjct: 1034 PAVGSLTTAATGGGQGPSTSTIPGPST 1060
>TAIR|locus:2077137 [details] [associations]
symbol:AT3G46020 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0005575 "cellular_component" evidence=ND] [GO:0008150
"biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002686 GenomeReviews:BA000014_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003676 EMBL:AL162459 eggNOG:COG0724
HOGENOM:HOG000276232 HSSP:Q61474 EMBL:BT012586 EMBL:BT015095
IPI:IPI00521590 RefSeq:NP_190188.1 UniGene:At.35968
ProteinModelPortal:Q9LZT1 SMR:Q9LZT1 EnsemblPlants:AT3G46020.1
GeneID:823745 KEGG:ath:AT3G46020 TAIR:At3g46020 InParanoid:Q9LZT1
OMA:QIKEARL PhylomeDB:Q9LZT1 ProtClustDB:CLSN2915511
Genevestigator:Q9LZT1 Uniprot:Q9LZT1
Length = 102
Score = 107 (42.7 bits), Expect = 1.2e-05, P = 1.2e-05
Identities = 20/54 (37%), Positives = 36/54 (66%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLAS 55
SE R KGFGF+ F S ++A KA+ ++G+I+ + ++V +A+ E+ +A + S
Sbjct: 42 SETQRPKGFGFITFDSEDDARKALKSLDGKIVDGRLIFVEVAKNAEEVRAGINS 95
>UNIPROTKB|Q29RT0 [details] [associations]
symbol:RBMX "RNA-binding motif protein, X chromosome"
species:9913 "Bos taurus" [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0000381 "regulation of alternative mRNA splicing,
via spliceosome" evidence=ISS] [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] [GO:0045944 "positive
regulation of transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0001047 "core promoter binding" evidence=ISS]
[GO:0070062 "extracellular vesicular exosome" evidence=ISS]
[GO:0006366 "transcription from RNA polymerase II promoter"
evidence=ISS] [GO:0003682 "chromatin binding" evidence=ISS]
[GO:0003723 "RNA binding" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0048025 "negative regulation
of mRNA splicing, via spliceosome" evidence=ISS] [GO:0071013
"catalytic step 2 spliceosome" evidence=ISS] [GO:0005719 "nuclear
euchromatin" evidence=ISS] [GO:0005634 "nucleus" evidence=ISS]
[GO:0003729 "mRNA binding" evidence=ISS] [GO:0071347 "cellular
response to interleukin-1" evidence=ISS] [GO:0006509 "membrane
protein ectodomain proteolysis" evidence=ISS] [GO:0008380 "RNA
splicing" evidence=IEA] [GO:0006397 "mRNA processing" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381 GO:GO:0044530
EMBL:BC114040 IPI:IPI00721392 RefSeq:NP_001040075.1
RefSeq:XP_001250252.1 UniGene:Bt.59490 ProteinModelPortal:Q29RT0
SMR:Q29RT0 Ensembl:ENSBTAT00000066112 GeneID:617969 GeneID:782306
KEGG:bta:617969 KEGG:bta:782306 CTD:27288
GeneTree:ENSGT00700000104336 HOGENOM:HOG000276235
HOVERGEN:HBG063314 InParanoid:Q29RT0 OMA:GDFDLRP OrthoDB:EOG4WSWBK
NextBio:20900925 InterPro:IPR012604 Pfam:PF08081 Uniprot:Q29RT0
Length = 396
Score = 126 (49.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 55/183 (30%), Positives = 77/183 (42%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR---KEDRKAHLASQYMQ 59
E +S+GF F+ F SP +A AV +MNG+ + K + VA A + + R+ S+
Sbjct: 44 ETNKSRGFAFITFESPADAKAAVRDMNGKSLDGKAIKVAQATKPAFESGRRGPPLSRSRG 103
Query: 60 RIANMRMQQMGQLFQPGSTGG------YFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQM 113
R +R + G +P S GG Y +P R P M + P PR A P
Sbjct: 104 RSRGLRGARGGGPRRPPSRGGPADDGGYAGDFDLRPSR--APLPMKRGPPPPRRAGPPPK 161
Query: 114 R--PSGQTAQGFPNIPQFRSAPRASTGQTVIRGA-NMSARPITGQSTMGPRGGGPMQAPG 170
R PSG G + R AP A+ G+ G P +G R GG G
Sbjct: 162 RAAPSGPARSGSGGGMRGR-AP-AARGRDGYEGPPRRDPPPPRRDPYLGSREGGYSPRDG 219
Query: 171 PAS 173
+S
Sbjct: 220 YSS 222
Score = 38 (18.4 bits), Expect = 1.6e-05, Sum P(2) = 1.6e-05
Identities = 7/20 (35%), Positives = 9/20 (45%)
Query: 160 PRGGGPMQAPGPASVSAAGR 179
PR P + P P+ GR
Sbjct: 292 PRSAAPARGPPPSYGGGGGR 311
>MGI|MGI:1918040 [details] [associations]
symbol:Ubr5 "ubiquitin protein ligase E3 component
n-recognin 5" species:10090 "Mus musculus" [GO:0000209 "protein
polyubiquitination" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IBA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IBA] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006464 "cellular
protein modification process" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0033160 "positive regulation of protein import into nucleus,
translocation" evidence=ISO] [GO:0034450 "ubiquitin-ubiquitin
ligase activity" evidence=ISO] [GO:0035413 "positive regulation of
catenin import into nucleus" evidence=ISO] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IBA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0050847 "progesterone receptor signaling pathway"
evidence=ISO;IBA] [GO:0090263 "positive regulation of canonical Wnt
receptor signaling pathway" evidence=ISO] [GO:1901315 "negative
regulation of histone H2A K63-linked ubiquitination" evidence=ISO]
[GO:2000780 "negative regulation of double-strand break repair"
evidence=ISO] Pfam:PF00632 InterPro:IPR000569 InterPro:IPR002004
InterPro:IPR003126 InterPro:IPR024725 Pfam:PF00658 Pfam:PF02207
Pfam:PF11547 PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 UniPathway:UPA00143 MGI:MGI:1918040
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008270
GO:GO:0006281 GO:GO:0006974 GO:GO:0003723 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 GO:GO:0042787
Gene3D:1.10.1900.10 SUPFAM:SSF63570 SUPFAM:SSF56204 eggNOG:COG5021
KO:K10593 ChiTaRS:UBR5 InterPro:IPR013993 SMART:SM00396
GO:GO:0050847 GO:GO:2000780 GO:GO:1901315 CTD:51366
HOVERGEN:HBG096012 OrthoDB:EOG4QVCB2 EMBL:AY550908 EMBL:AK122398
EMBL:BC049162 EMBL:BC049224 EMBL:BC057458 EMBL:BC057923
EMBL:AK014485 IPI:IPI00831567 RefSeq:NP_001074828.2
RefSeq:NP_001106192.1 UniGene:Mm.476840 ProteinModelPortal:Q80TP3
SMR:Q80TP3 DIP:DIP-56890N IntAct:Q80TP3 STRING:Q80TP3
PhosphoSite:Q80TP3 PaxDb:Q80TP3 PRIDE:Q80TP3 GeneID:70790
KEGG:mmu:70790 UCSC:uc007vno.1 NextBio:332258 Genevestigator:Q80TP3
GermOnline:ENSMUSG00000037487 Uniprot:Q80TP3
Length = 2792
Score = 140 (54.3 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2388 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2438
Score = 41 (19.5 bits), Expect = 2.1e-05, Sum P(2) = 2.1e-05
Identities = 14/59 (23%), Positives = 26/59 (44%)
Query: 135 ASTGQTVIRGANMSARP--ITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRN 191
+ TG+T R S P ++G T+G G + + + V +G + G + R+
Sbjct: 96 SGTGRTS-RPGRTSDSPWFLSGSETLGRLAGNTLGSRWSSGVGGSGGGSSGRSSAGARD 153
>FB|FBgn0004838 [details] [associations]
symbol:Hrb27C "Heterogeneous nuclear ribonucleoprotein at
27C" species:7227 "Drosophila melanogaster" [GO:0030529
"ribonucleoprotein complex" evidence=ISS;NAS;IDA;IPI] [GO:0005730
"nucleolus" evidence=IDA] [GO:0003697 "single-stranded DNA binding"
evidence=IDA] [GO:0005654 "nucleoplasm" evidence=IDA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS;NAS]
[GO:0048027 "mRNA 5'-UTR binding" evidence=NAS;TAS] [GO:0007319
"negative regulation of oskar mRNA translation" evidence=TAS]
[GO:0003730 "mRNA 3'-UTR binding" evidence=IDA;TAS] [GO:0007317
"regulation of pole plasm oskar mRNA localization" evidence=IMP]
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0045451 "pole
plasm oskar mRNA localization" evidence=IMP] [GO:0048024
"regulation of mRNA splicing, via spliceosome" evidence=IMP]
[GO:0007298 "border follicle cell migration" evidence=IMP]
[GO:0045727 "positive regulation of translation" evidence=IDA]
[GO:0043234 "protein complex" evidence=IPI] [GO:0005515 "protein
binding" evidence=IPI] [GO:0007411 "axon guidance" evidence=IMP]
[GO:0046331 "lateral inhibition" evidence=IMP] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005737 GO:GO:0007411 GO:GO:0043234 GO:GO:0005654
EMBL:AE014134 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0007298
GO:GO:0048027 GO:GO:0003730 GO:GO:0003697 GO:GO:0030529
GO:GO:0046331 GO:GO:0045727 GO:GO:0048024 GO:GO:0007319
eggNOG:COG0724 GO:GO:0045451 KO:K14411 GeneTree:ENSGT00700000104255
EMBL:X62639 EMBL:DQ062784 EMBL:AY069699 EMBL:AY128430 EMBL:S51720
PIR:D41732 RefSeq:NP_001162897.1 RefSeq:NP_001162898.1
RefSeq:NP_001245917.1 RefSeq:NP_001245918.1 RefSeq:NP_001245919.1
RefSeq:NP_476869.1 RefSeq:NP_723228.1 RefSeq:NP_723229.1
UniGene:Dm.1997 ProteinModelPortal:P48809 SMR:P48809 IntAct:P48809
MINT:MINT-939547 STRING:P48809 PaxDb:P48809
EnsemblMetazoa:FBtr0079346 EnsemblMetazoa:FBtr0079347
EnsemblMetazoa:FBtr0079348 EnsemblMetazoa:FBtr0301403
EnsemblMetazoa:FBtr0301404 EnsemblMetazoa:FBtr0307030
EnsemblMetazoa:FBtr0307031 EnsemblMetazoa:FBtr0307032 GeneID:33968
KEGG:dme:Dmel_CG10377 CTD:33968 FlyBase:FBgn0004838
InParanoid:P48809 OMA:GGYDMYN OrthoDB:EOG4CJSZQ PhylomeDB:P48809
ChiTaRS:Hrb27C GenomeRNAi:33968 NextBio:786189 Bgee:P48809
GermOnline:CG10377 Uniprot:P48809
Length = 421
Score = 94 (38.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 39/123 (31%), Positives = 46/123 (37%)
Query: 75 PGSTGGYFVPTLPQ---PQ--RFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGF------ 123
PGS G+ P PQ PQ + GP Q + + PSG + G
Sbjct: 255 PGSYQGWGAPPGPQGPPPQWSNYAGPQQTQGYGGYDMYNSTSTGAPSGPSGGGSWNSWNM 314
Query: 124 -PNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPG-PASVSAAGRQT 181
PN AP A G + A G ST GP GG P PG AS S +
Sbjct: 315 PPNSAGPTGAPGAGAGTATDMYSRAQAWATGGPSTTGPVGGMPRTGPGNSASKSGSEYDY 374
Query: 182 GGY 184
GGY
Sbjct: 375 GGY 377
Score = 74 (31.1 bits), Expect = 2.2e-05, Sum P(2) = 2.2e-05
Identities = 16/40 (40%), Positives = 22/40 (55%)
Query: 2 SEDGRSKGFGFVCFSSPEEATKAVTE----MNGRIIGSKP 37
+E GRS+GFGFV F+ P + ++GR I KP
Sbjct: 42 NESGRSRGFGFVTFADPTNVNHVLQNGPHTLDGRTIDPKP 81
>UNIPROTKB|Q6IRQ4 [details] [associations]
symbol:rbmx "RNA-binding motif protein, X chromosome"
species:8355 "Xenopus laevis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0007275
GO:GO:0008380 GO:GO:0000166 GO:GO:0070062 GO:GO:0051260
GO:GO:0003729 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0045944
GO:GO:0003682 GO:GO:0006366 GO:GO:0006509 GO:GO:0001047
GO:GO:0005719 GO:GO:0071347 GO:GO:0071013 GO:GO:0048025
GO:GO:0048026 GO:GO:0000381 GO:GO:0044530 HOVERGEN:HBG063314
InterPro:IPR012604 Pfam:PF08081 CTD:27316 KO:K12885 EMBL:BC070649
RefSeq:NP_001084981.1 UniGene:Xl.25221 HSSP:P08579
ProteinModelPortal:Q6IRQ4 SMR:Q6IRQ4 GeneID:432041 KEGG:xla:432041
Xenbase:XB-GENE-6078824 Uniprot:Q6IRQ4
Length = 370
Score = 95 (38.5 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
E +S+GF FV F SP +A A E+NG+ + KP+ V A +
Sbjct: 44 ETNKSRGFAFVTFESPADAKDAARELNGKALDGKPIKVEQATK 86
Score = 71 (30.1 bits), Expect = 2.4e-05, Sum P(2) = 2.4e-05
Identities = 30/91 (32%), Positives = 37/91 (40%)
Query: 114 RPSGQTA--QGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGP---MQA 168
+PS T +G P P+ R PR G RG S + + PR GGP A
Sbjct: 86 KPSFSTPSRRGPPTSPRSRGPPRGLRGS---RGGGSSRGQMPLKRGPPPRSGGPPPKRSA 142
Query: 169 P-GPASVSAAG------RQTGGYNKYPVRNP 192
P GP S G R+ GY P R+P
Sbjct: 143 PSGPLRSSEMGGRAPLSRERDGYGAPPRRDP 173
>UNIPROTKB|A9UMT9 [details] [associations]
symbol:LOC100135403 "LOC100135403 protein" species:8364
"Xenopus (Silurana) tropicalis" [GO:0000381 "regulation of
alternative mRNA splicing, via spliceosome" evidence=ISS]
[GO:0001047 "core promoter binding" evidence=ISS] [GO:0003682
"chromatin binding" evidence=ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0003729 "mRNA binding" evidence=ISS] [GO:0005634
"nucleus" evidence=ISS] [GO:0005719 "nuclear euchromatin"
evidence=ISS] [GO:0006366 "transcription from RNA polymerase II
promoter" evidence=ISS] [GO:0006509 "membrane protein ectodomain
proteolysis" evidence=ISS] [GO:0044530 "supraspliceosomal complex"
evidence=ISS] [GO:0045944 "positive regulation of transcription
from RNA polymerase II promoter" evidence=ISS] [GO:0048025
"negative regulation of mRNA splicing, via spliceosome"
evidence=ISS] [GO:0048026 "positive regulation of mRNA splicing,
via spliceosome" evidence=ISS] [GO:0051260 "protein
homooligomerization" evidence=ISS] [GO:0070062 "extracellular
vesicular exosome" evidence=ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISS] [GO:0071347 "cellular response to
interleukin-1" evidence=ISS] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0000166
GO:GO:0070062 GO:GO:0051260 GO:GO:0003729 Gene3D:3.30.70.330
GO:GO:0045944 GO:GO:0003682 GO:GO:0006366 GO:GO:0006509
GO:GO:0001047 GO:GO:0005719 GO:GO:0071347 GO:GO:0071013
GO:GO:0048025 eggNOG:COG0724 GO:GO:0048026 GO:GO:0000381
GO:GO:0044530 HOVERGEN:HBG063314 InterPro:IPR012604 Pfam:PF08081
EMBL:BC157792 UniGene:Str.67350 ProteinModelPortal:A9UMT9
STRING:A9UMT9 Uniprot:A9UMT9
Length = 375
Score = 95 (38.5 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 18/43 (41%), Positives = 26/43 (60%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
E +S+GF FV F SP +A A E+NG+ + KP+ V A +
Sbjct: 44 ETNKSRGFAFVTFESPADAKDAARELNGKALDGKPIKVEQATK 86
Score = 70 (29.7 bits), Expect = 3.2e-05, Sum P(2) = 3.2e-05
Identities = 28/87 (32%), Positives = 35/87 (40%)
Query: 116 SGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGP---MQAP-GP 171
S + +G P P+ R PR G RG S + + PR GGP AP GP
Sbjct: 90 SAPSRRGPPPPPRSRGPPRGLRGS---RGGGSSRGQMPLKRGPPPRSGGPPPKRSAPSGP 146
Query: 172 ASVSAAG------RQTGGYNKYPVRNP 192
S G R+ GY P R+P
Sbjct: 147 VRSSGMGGRAPLSRERDGYGAPPRRDP 173
>ZFIN|ZDB-GENE-030131-6559 [details] [associations]
symbol:ubr5 "ubiquitin protein ligase E3 component
n-recognin 5" species:7955 "Danio rerio" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA;IBA] [GO:0006464
"cellular protein modification process" evidence=IEA] [GO:0043130
"ubiquitin binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0050847 "progesterone receptor
signaling pathway" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IBA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 InterPro:IPR003126 InterPro:IPR024725
Pfam:PF00658 Pfam:PF02207 Pfam:PF11547 PROSITE:PS50237
PROSITE:PS51157 PROSITE:PS51309 SMART:SM00119 SMART:SM00517
ZFIN:ZDB-GENE-030131-6559 GO:GO:0005634 GO:GO:0005737 GO:GO:0008270
GO:GO:0003723 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
GO:GO:0004842 GO:GO:0042787 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 GeneTree:ENSGT00640000091448 InterPro:IPR013993
SMART:SM00396 GO:GO:0050847 EMBL:CR293507 IPI:IPI00618527
Ensembl:ENSDART00000134444 ArrayExpress:F1QT71 Bgee:F1QT71
Uniprot:F1QT71
Length = 2822
Score = 138 (53.6 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P + M P A KITGMLLE+ A+LL +L +SL+++VEE
Sbjct: 2417 RQALGERLYPRVHAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEE 2467
Score = 40 (19.1 bits), Expect = 4.6e-05, Sum P(2) = 4.6e-05
Identities = 13/51 (25%), Positives = 21/51 (41%)
Query: 142 IRGANMSARP---------ITGQSTMGPRGGGPMQAPGPASVSAAGRQTGG 183
+ GA S+RP ++G T+G G + + V+ G GG
Sbjct: 95 VSGAGRSSRPGRTSDPPWFLSGSDTLGRLAGNTLGTRWSSGVNGGGSGGGG 145
Score = 38 (18.4 bits), Expect = 7.4e-05, Sum P(2) = 7.4e-05
Identities = 12/42 (28%), Positives = 17/42 (40%)
Query: 142 IRGANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGG 183
+ G + R +G + G GGG G S +G GG
Sbjct: 123 LAGNTLGTRWSSGVNG-GGSGGGGSSGGGAGGGSGSGGGAGG 163
>UNIPROTKB|F1PBF9 [details] [associations]
symbol:UBR5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043130 "ubiquitin binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR002004
InterPro:IPR003126 InterPro:IPR024725 Pfam:PF00658 Pfam:PF02207
Pfam:PF11547 PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 GO:GO:0008270 GO:GO:0016567
GO:GO:0003723 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 GeneTree:ENSGT00640000091448 KO:K10593 OMA:ERCDGNR
InterPro:IPR013993 SMART:SM00396 CTD:51366 EMBL:AAEX03008693
EMBL:AAEX03008694 RefSeq:XP_532290.2 Ensembl:ENSCAFT00000000972
GeneID:475055 KEGG:cfa:475055 Uniprot:F1PBF9
Length = 2798
Score = 140 (54.3 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2394 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2444
Score = 37 (18.1 bits), Expect = 5.5e-05, Sum P(2) = 5.5e-05
Identities = 13/58 (22%), Positives = 25/58 (43%)
Query: 135 ASTGQTVIRG-ANMSARPITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRN 191
+ G+T G N S ++G T+G G + + + V +G + G + R+
Sbjct: 96 SGAGRTSRPGRTNDSPWFLSGSETLGRLAGNTLGSRWSSGVGGSGGGSSGRSSAGARD 153
>TAIR|locus:2160752 [details] [associations]
symbol:AT5G06210 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] [GO:0009507
"chloroplast" evidence=ISM] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 EMBL:CP002688
GenomeReviews:BA000015_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 eggNOG:COG0724 EMBL:AP002544 HOGENOM:HOG000276232
HSSP:Q61474 EMBL:AY062714 EMBL:AY093349 EMBL:AY087577
IPI:IPI00530408 RefSeq:NP_196239.1 UniGene:At.27256
ProteinModelPortal:Q9FFZ6 SMR:Q9FFZ6 STRING:Q9FFZ6 PaxDb:Q9FFZ6
PRIDE:Q9FFZ6 EnsemblPlants:AT5G06210.1 GeneID:830508
KEGG:ath:AT5G06210 TAIR:At5g06210 InParanoid:Q9FFZ6 OMA:SDRSKGF
PhylomeDB:Q9FFZ6 ProtClustDB:CLSN2686837 ArrayExpress:Q9FFZ6
Genevestigator:Q9FFZ6 Uniprot:Q9FFZ6
Length = 146
Score = 105 (42.0 bits), Expect = 5.9e-05, P = 5.9e-05
Identities = 20/42 (47%), Positives = 30/42 (71%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47
RSKGFGFV F+S +EA KA+ E NG+ + + ++V A+ K+
Sbjct: 73 RSKGFGFVTFASADEAQKALMEFNGQQLNGRTIFVDYAKAKQ 114
>UNIPROTKB|F1P0U1 [details] [associations]
symbol:Gga.55416 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR002004
InterPro:IPR003126 InterPro:IPR024725 Pfam:PF00658 Pfam:PF02207
Pfam:PF11547 PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 GO:GO:0008270 GO:GO:0016567
GO:GO:0003723 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 GeneTree:ENSGT00640000091448 OMA:ERCDGNR
InterPro:IPR013993 SMART:SM00396 EMBL:AADN02023127
EMBL:AADN02023128 EMBL:AADN02023129 EMBL:AADN02023130
EMBL:AADN02023131 EMBL:AADN02023132 EMBL:AADN02023133
EMBL:AADN02023134 EMBL:AADN02023135 EMBL:AADN02023136
EMBL:AADN02023137 EMBL:AADN02023138 EMBL:AADN02023139
IPI:IPI00575408 Ensembl:ENSGALT00000025850 Uniprot:F1P0U1
Length = 2775
Score = 140 (54.3 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2371 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2421
Score = 36 (17.7 bits), Expect = 6.8e-05, Sum P(2) = 6.8e-05
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 135 ASTGQTVIRGANMSARP--ITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRN 191
+ G+T R S P ++G T+G G + + + V +G + G + R+
Sbjct: 76 SGAGRTS-RPGRTSDSPWFLSGSETLGRLAGNTLGSRWSSGVGGSGGGSSGRSSAGARD 133
>UNIPROTKB|E7EMW7 [details] [associations]
symbol:UBR5 "E3 ubiquitin-protein ligase UBR5" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR002004
InterPro:IPR003126 InterPro:IPR024725 Pfam:PF00658 Pfam:PF02207
Pfam:PF11547 PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 GO:GO:0008270 GO:GO:0016567
GO:GO:0003723 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 ChiTaRS:UBR5 InterPro:IPR013993 SMART:SM00396
EMBL:AP002907 HGNC:HGNC:16806 EMBL:AP002981 IPI:IPI00983716
ProteinModelPortal:E7EMW7 SMR:E7EMW7 Ensembl:ENST00000521922
ArrayExpress:E7EMW7 Bgee:E7EMW7 Uniprot:E7EMW7
Length = 2792
Score = 140 (54.3 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2388 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2438
Score = 36 (17.7 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 135 ASTGQTVIRGANMSARP--ITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRN 191
+ G+T R S P ++G T+G G + + + V +G + G + R+
Sbjct: 96 SGAGRTS-RPGRTSDSPWFLSGSETLGRLAGNTLGSRWSSGVGGSGGGSSGRSSAGARD 153
>UNIPROTKB|F1N0L2 [details] [associations]
symbol:UBR5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000780 "negative regulation of double-strand break
repair" evidence=IEA] [GO:1901315 "negative regulation of histone
H2A K63-linked ubiquitination" evidence=IEA] [GO:0090263 "positive
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0050847 "progesterone receptor signaling pathway"
evidence=IEA] [GO:0035413 "positive regulation of catenin import
into nucleus" evidence=IEA] [GO:0034450 "ubiquitin-ubiquitin ligase
activity" evidence=IEA] [GO:0033160 "positive regulation of protein
import into nucleus, translocation" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000209 "protein polyubiquitination"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 InterPro:IPR003126 InterPro:IPR024725
Pfam:PF00658 Pfam:PF02207 Pfam:PF11547 PROSITE:PS50237
PROSITE:PS51157 PROSITE:PS51309 SMART:SM00119 SMART:SM00517
GO:GO:0005634 GO:GO:0008270 GO:GO:0006974 GO:GO:0003723
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0090263
GO:GO:0000209 GO:GO:0035413 GO:GO:0034450 GO:GO:0033160
Gene3D:1.10.1900.10 SUPFAM:SSF63570 SUPFAM:SSF56204
GeneTree:ENSGT00640000091448 KO:K10593 OMA:ERCDGNR
InterPro:IPR013993 SMART:SM00396 GO:GO:0050847 CTD:51366
EMBL:DAAA02039335 IPI:IPI00711165 RefSeq:NP_001179346.1
UniGene:Bt.30209 PRIDE:F1N0L2 Ensembl:ENSBTAT00000028262
GeneID:515582 KEGG:bta:515582 NextBio:20871904 Uniprot:F1N0L2
Length = 2798
Score = 140 (54.3 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2394 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2444
Score = 36 (17.7 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 135 ASTGQTVIRGANMSARP--ITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRN 191
+ G+T R S P ++G T+G G + + + V +G + G + R+
Sbjct: 96 SGAGRTS-RPGRTSDSPWFLSGSETLGRLAGNTLGSRWSSGVGGSGGGSSGRSSAGARD 153
>UNIPROTKB|J3KMW7 [details] [associations]
symbol:UBR5 "E3 ubiquitin-protein ligase UBR5" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR002004
InterPro:IPR003126 InterPro:IPR024725 Pfam:PF00658 Pfam:PF02207
Pfam:PF11547 PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 GO:GO:0008270 GO:GO:0016567
GO:GO:0003723 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 ChiTaRS:UBR5 InterPro:IPR013993 SMART:SM00396
EMBL:AP002907 HGNC:HGNC:16806 EMBL:AP002981
ProteinModelPortal:J3KMW7 Ensembl:ENST00000220959 Uniprot:J3KMW7
Length = 2798
Score = 140 (54.3 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2394 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2444
Score = 36 (17.7 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 135 ASTGQTVIRGANMSARP--ITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRN 191
+ G+T R S P ++G T+G G + + + V +G + G + R+
Sbjct: 96 SGAGRTS-RPGRTSDSPWFLSGSETLGRLAGNTLGSRWSSGVGGSGGGSSGRSSAGARD 153
>UNIPROTKB|O95071 [details] [associations]
symbol:UBR5 "E3 ubiquitin-protein ligase UBR5" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IBA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IBA] [GO:1901315 "negative regulation of histone H2A
K63-linked ubiquitination" evidence=IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IDA;IMP] [GO:2000780 "negative
regulation of double-strand break repair" evidence=IMP] [GO:0004842
"ubiquitin-protein ligase activity" evidence=TAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0008283 "cell proliferation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0050847 "progesterone receptor
signaling pathway" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0035413 "positive regulation of catenin import
into nucleus" evidence=IMP] [GO:0033160 "positive regulation of
protein import into nucleus, translocation" evidence=IMP]
[GO:0090263 "positive regulation of canonical Wnt receptor
signaling pathway" evidence=IMP] [GO:0000209 "protein
polyubiquitination" evidence=IDA] [GO:0034450 "ubiquitin-ubiquitin
ligase activity" evidence=IDA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 InterPro:IPR003126 InterPro:IPR024725
Pfam:PF00658 Pfam:PF02207 Pfam:PF11547 PROSITE:PS50237
PROSITE:PS51157 PROSITE:PS51309 SMART:SM00119 SMART:SM00517
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0008283 GO:GO:0008270 GO:GO:0006281 GO:GO:0006974
GO:GO:0003723 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
GO:GO:0090263 GO:GO:0000209 GO:GO:0042787 GO:GO:0035413
GO:GO:0034450 GO:GO:0033160 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 eggNOG:COG5021 KO:K10593 OMA:ERCDGNR ChiTaRS:UBR5
InterPro:IPR013993 SMART:SM00396 GO:GO:0050847 GO:GO:2000780
GO:GO:1901315 PDB:2QHO PDBsum:2QHO EMBL:AF006010 EMBL:U95000
EMBL:AB020703 EMBL:BC137234 IPI:IPI00026320 RefSeq:NP_056986.2
UniGene:Hs.492445 PDB:1I2T PDB:3PT3 PDBsum:1I2T PDBsum:3PT3
ProteinModelPortal:O95071 SMR:O95071 DIP:DIP-32930N IntAct:O95071
MINT:MINT-196086 STRING:O95071 PhosphoSite:O95071 PaxDb:O95071
PRIDE:O95071 Ensembl:ENST00000520539 GeneID:51366 KEGG:hsa:51366
UCSC:uc003ykr.2 CTD:51366 GeneCards:GC08M103265 H-InvDB:HIX0025542
HGNC:HGNC:16806 HPA:HPA024728 MIM:608413 neXtProt:NX_O95071
PharmGKB:PA162408175 HOGENOM:HOG000046848 HOVERGEN:HBG096012
InParanoid:O95071 OrthoDB:EOG4QVCB2 EvolutionaryTrace:O95071
GenomeRNAi:51366 NextBio:54837 ArrayExpress:O95071 Bgee:O95071
CleanEx:HS_UBR5 Genevestigator:O95071 GermOnline:ENSG00000104517
Uniprot:O95071
Length = 2799
Score = 140 (54.3 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 235 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 285
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2394 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2444
Score = 36 (17.7 bits), Expect = 6.9e-05, Sum P(2) = 6.9e-05
Identities = 13/59 (22%), Positives = 25/59 (42%)
Query: 135 ASTGQTVIRGANMSARP--ITGQSTMGPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRN 191
+ G+T R S P ++G T+G G + + + V +G + G + R+
Sbjct: 96 SGAGRTS-RPGRTSDSPWFLSGSETLGRLAGNTLGSRWSSGVGGSGGGSSGRSSAGARD 153
>POMBASE|SPAC31G5.01 [details] [associations]
symbol:sap49 "U2 snRNP-associated RNA-binding protein
Sap49" species:4896 "Schizosaccharomyces pombe" [GO:0003723 "RNA
binding" evidence=ISM] [GO:0005634 "nucleus" evidence=IDA]
[GO:0005686 "U2 snRNP" evidence=ISO] [GO:0005829 "cytosol"
evidence=IDA] [GO:0045292 "mRNA cis splicing, via spliceosome"
evidence=TAS] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 PomBase:SPAC31G5.01 GO:GO:0005829
EMBL:CU329670 GenomeReviews:CU329670_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 GO:GO:0005686 GO:GO:0045292
eggNOG:NOG282907 HOGENOM:HOG000200535 KO:K12831 OrthoDB:EOG4Q886Z
RefSeq:NP_594001.2 ProteinModelPortal:O14102 SMR:O14102
IntAct:O14102 STRING:O14102 EnsemblFungi:SPAC31G5.01.1
GeneID:2542426 KEGG:spo:SPAC31G5.01 OMA:QVARDEN NextBio:20803483
Uniprot:O14102
Length = 335
Score = 120 (47.3 bits), Expect = 7.2e-05, P = 7.2e-05
Identities = 49/183 (26%), Positives = 77/183 (42%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE---DRKAHLASQYMQ 59
E+GRSKG+GFV + S E A A+ MN + + +KP+ V+ A ++E +R +A + +
Sbjct: 135 ENGRSKGYGFVSYDSFETADAAIEAMNNQFLMNKPITVSYAFKREGKGERHGDIAERKLA 194
Query: 60 RIANMRMQQMGQLFQPGSTGGYFVPTLPQPQRFYG-PTQM--TQIRPQPRWAAAPQMRPS 116
A + ++ Q G F P P P P + T I P P P + +
Sbjct: 195 AAA--KKNKVAVTPQSTLPPG-FSPATPAPTSAANTPATIAATSIPPVPN---VPLVGAT 248
Query: 117 GQTAQ-GFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQAPGPASVS 175
PN+ F +A G + N+ P P G M +P PA+ +
Sbjct: 249 TAVPPLSIPNVLPFTAAQHFP-GMPAMPMMNVPMGPGGAPLVPPPPPGMVMASPSPAAAT 307
Query: 176 AAG 178
G
Sbjct: 308 IPG 310
>FB|FBgn0035016 [details] [associations]
symbol:CG4612 species:7227 "Drosophila melanogaster"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 EMBL:AE013599 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0008143 HSSP:P11940 eggNOG:NOG246493
GeneTree:ENSGT00630000089747 EMBL:AY060413 RefSeq:NP_001246492.1
RefSeq:NP_001246493.1 RefSeq:NP_611924.1 UniGene:Dm.773 SMR:Q9W158
IntAct:Q9W158 MINT:MINT-870450 STRING:Q9W158
EnsemblMetazoa:FBtr0072346 EnsemblMetazoa:FBtr0306137 GeneID:37914
KEGG:dme:Dmel_CG4612 UCSC:CG4612-RA FlyBase:FBgn0035016
InParanoid:Q9W158 OMA:EPYGRIT OrthoDB:EOG4KPRS4 GenomeRNAi:37914
NextBio:806022 Uniprot:Q9W158
Length = 307
Score = 118 (46.6 bits), Expect = 0.00010, P = 0.00010
Identities = 27/74 (36%), Positives = 46/74 (62%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIG-SKPLYVALAQRKEDRKAHLASQYMQ 59
+ E+GRS+ FGFV + +P+ A AV ++G+ +G +K LYVA A K +R+ + + +
Sbjct: 236 LDEEGRSRRFGFVAYENPQSALAAVIGLHGKQLGDNKFLYVARALSKAERQQEINRKLEE 295
Query: 60 RIANMRMQQMGQLF 73
R + Q+ GQ+F
Sbjct: 296 R----KRQKAGQIF 305
Score = 112 (44.5 bits), Expect = 0.00051, P = 0.00051
Identities = 25/78 (32%), Positives = 47/78 (60%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA--LAQR-KEDRKA-HLASQYM 58
EDG S+G+GFV F S E A A+ ++NG + ++ ++V + +R +E KA H + Y+
Sbjct: 148 EDGNSRGYGFVHFDSEEAARAAIEKVNGMLCNNQKVHVVKFIPRRDREQEKATHFKNLYV 207
Query: 59 QRIAN-MRMQQMGQLFQP 75
+ ++ Q + ++F+P
Sbjct: 208 KNLSEEFTEQHLREMFEP 225
>TAIR|locus:2049816 [details] [associations]
symbol:AT2G37510 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 EMBL:AC005896 GO:GO:0003676 HOGENOM:HOG000276232
HSSP:P11940 EMBL:AY084740 EMBL:BT028941 IPI:IPI00545899 PIR:F84793
RefSeq:NP_181287.1 UniGene:At.37414 ProteinModelPortal:Q8S8L4
SMR:Q8S8L4 PRIDE:Q8S8L4 EnsemblPlants:AT2G37510.1 GeneID:818327
KEGG:ath:AT2G37510 TAIR:At2g37510 eggNOG:NOG305672
InParanoid:Q8S8L4 OMA:NKTIGWC PhylomeDB:Q8S8L4
ProtClustDB:CLSN2683075 ArrayExpress:Q8S8L4 Genevestigator:Q8S8L4
Uniprot:Q8S8L4
Length = 142
Score = 102 (41.0 bits), Expect = 0.00013, P = 0.00013
Identities = 20/48 (41%), Positives = 32/48 (66%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+ GRSKGFGFV +++ E+A KA EMN + + ++V A+ +E R+
Sbjct: 70 DSGRSKGFGFVTYATIEDAEKAKAEMNAKFLDGWVIFVDPARPREPRR 117
>UNIPROTKB|H0YBN4 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102
SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000523555
Uniprot:H0YBN4
Length = 175
Score = 108 (43.1 bits), Expect = 0.00026, P = 0.00026
Identities = 21/69 (30%), Positives = 44/69 (63%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIA 62
E+G SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R+A L ++ +
Sbjct: 81 ENG-SKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKEREAELGAR-AKEFT 138
Query: 63 NMRMQQMGQ 71
N+ ++ G+
Sbjct: 139 NVYIKNFGE 147
>TAIR|locus:2076096 [details] [associations]
symbol:GRP4 "glycine-rich RNA-binding protein 4"
species:3702 "Arabidopsis thaliana" [GO:0000166 "nucleotide
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=ISS;IDA]
[GO:0005739 "mitochondrion" evidence=IDA] [GO:0003690
"double-stranded DNA binding" evidence=IDA] [GO:0003697
"single-stranded DNA binding" evidence=IDA] [GO:0006970 "response
to osmotic stress" evidence=IMP] [GO:0009409 "response to cold"
evidence=IEP] [GO:0009414 "response to water deprivation"
evidence=IEP] [GO:0009651 "response to salt stress" evidence=IMP]
[GO:0006364 "rRNA processing" evidence=RCA] [GO:0009664 "plant-type
cell wall organization" evidence=RCA] [GO:0042545 "cell wall
modification" evidence=RCA] InterPro:IPR000504 InterPro:IPR012677
Pfam:PF00076 PROSITE:PS50102 SMART:SM00360 GO:GO:0005739
EMBL:CP002686 GO:GO:0000166 GO:GO:0009651 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0003690 GO:GO:0003697 EMBL:AP001297
eggNOG:COG0724 HOGENOM:HOG000276232 HSSP:Q14103
ProtClustDB:PLN03134 EMBL:AY070755 EMBL:AY097374 EMBL:AY085838
IPI:IPI00523873 RefSeq:NP_189025.1 RefSeq:NP_850629.1
UniGene:At.8272 ProteinModelPortal:Q9LIS2 SMR:Q9LIS2 STRING:Q9LIS2
PaxDb:Q8LDS0 PRIDE:Q9LIS2 EnsemblPlants:AT3G23830.1
EnsemblPlants:AT3G23830.2 GeneID:821966 KEGG:ath:AT3G23830
GeneFarm:3951 TAIR:At3g23830 InParanoid:Q9LIS2 OMA:CEDSANN
PhylomeDB:Q9LIS2 Genevestigator:Q9LIS2 Uniprot:Q9LIS2
Length = 136
Score = 98 (39.6 bits), Expect = 0.00035, P = 0.00035
Identities = 19/44 (43%), Positives = 28/44 (63%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
E GRS+GFGFV FS + A A+ EM+G+ + + + V LA +
Sbjct: 71 ETGRSRGFGFVSFSCEDSANNAIKEMDGKELNGRQIRVNLATER 114
>TAIR|locus:2831834 [details] [associations]
symbol:AT5G03580 species:3702 "Arabidopsis thaliana"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676 "nucleic
acid binding" evidence=IEA;ISS] [GO:0003723 "RNA binding"
evidence=ISS] [GO:0005575 "cellular_component" evidence=ND]
[GO:0008150 "biological_process" evidence=ND] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:CP002688 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
IPI:IPI00525082 RefSeq:NP_195978.1 UniGene:At.65484
ProteinModelPortal:F4KGN7 SMR:F4KGN7 PRIDE:F4KGN7
EnsemblPlants:AT5G03580.1 GeneID:831785 KEGG:ath:AT5G03580
OMA:DNHGSSS PhylomeDB:F4KGN7 Uniprot:F4KGN7
Length = 101
Score = 92 (37.4 bits), Expect = 0.00054, P = 0.00054
Identities = 19/44 (43%), Positives = 27/44 (61%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48
G S+GF F+ F S + A +A+ M+GR+IG K L V + ED
Sbjct: 54 GESRGFAFIEFESADSAGRAMLHMDGRLIGQKILCVQRTPKVED 97
>CGD|CAL0004726 [details] [associations]
symbol:orf19.7368 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=IEA] [GO:0008266
"poly(U) RNA binding" evidence=IEA] [GO:0043488 "regulation of mRNA
stability" evidence=IEA] [GO:0034063 "stress granule assembly"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
CGD:CAL0004726 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
EMBL:AACQ01000066 eggNOG:COG0724 HOGENOM:HOG000206748 KO:K13201
RefSeq:XP_716609.1 ProteinModelPortal:Q5A4G6 STRING:Q5A4G6
GeneID:3641737 KEGG:cal:CaO19.7368 Uniprot:Q5A4G6
Length = 510
Score = 114 (45.2 bits), Expect = 0.00070, P = 0.00070
Identities = 48/196 (24%), Positives = 80/196 (40%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA-HLASQ----Y 57
+ RS+G+GFV F + +A A+ MNG + + + A K+ ++ H +Q Y
Sbjct: 209 QTSRSRGYGFVTFGNQSDAELALQTMNGEWLCGRAIRCNWASHKQQQQQQHYNNQHGGGY 268
Query: 58 MQRI-----ANMRMQQMGQL--FQPGSTGGYFVPTLPQPQRFYG--PTQMTQIRPQPRWA 108
+ N +Q Q G+ G+ P + +F G P Q Q + Q +
Sbjct: 269 SRGYRNNNGGNNNNRQFRQFNNINNGNNNGFSQPLVNNNPQFIGQQPPQPDQHQHQQQ-- 326
Query: 109 AAPQMRPSGQTAQGFPNIPQ--FRSAPRASTGQ-TVIRGANMSARPITGQSTMGPRGGGP 165
Q + Q+ G +PQ + + G T I G+N +A T G G P
Sbjct: 327 --QQQQQQQQSVNGANGVPQQMLQGLTNGNLGPGTPINGSNNAAGGFNNNGTAGNVAGAP 384
Query: 166 MQAPGPASVSAAGRQT 181
+ A GP ++ Q+
Sbjct: 385 V-AGGPGAIPVMSPQS 399
>UNIPROTKB|G4NFS0 [details] [associations]
symbol:MGG_08741 "tRNA selenocysteine-associated protein 1"
species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0008150 "biological_process"
evidence=ND] InterPro:IPR000504 InterPro:IPR012677 Pfam:PF00076
PROSITE:PS50102 SMART:SM00360 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003676 EMBL:CM001236 RefSeq:XP_003719244.1
EnsemblFungi:MGG_08741T0 GeneID:2679034 KEGG:mgr:MGG_08741
Uniprot:G4NFS0
Length = 415
Score = 108 (43.1 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 31/99 (31%), Positives = 44/99 (44%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANM 64
G+S+G+GFV F+ + +A+ EM G G++P+ ++ A K +Q M
Sbjct: 179 GQSRGYGFVRFTDESDQQRALVEMQGVYCGNRPMRISTATPKTRSHQQYGNQGPHGAGPM 238
Query: 65 RMQQMGQLFQPGSTG-GYFVPTLPQPQR-FYGPTQ-MTQ 100
M Q Q G GY P P P F P Q M Q
Sbjct: 239 NMTPPAQNMQWGMNPYGYQQPQAPPPNTAFNNPMQPMNQ 277
Score = 43 (20.2 bits), Expect = 0.00075, Sum P(2) = 0.00075
Identities = 9/17 (52%), Positives = 9/17 (52%)
Query: 159 GPRGGGPMQAPGPASVS 175
GP GG P PG VS
Sbjct: 394 GPFGGNPPPPPGGLQVS 410
>UNIPROTKB|Q4VY17 [details] [associations]
symbol:PABPC1L "EPAB" species:9606 "Homo sapiens"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
EMBL:AL008725 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
HOVERGEN:HBG002295 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797 EMBL:EU190483
IPI:IPI00306870 SMR:Q4VY17 STRING:Q4VY17 Ensembl:ENST00000217074
Ensembl:ENST00000537323 Uniprot:Q4VY17
Length = 330
Score = 111 (44.1 bits), Expect = 0.00076, P = 0.00076
Identities = 23/55 (41%), Positives = 33/55 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQ 59
G S+ FGFV F EEA KAV MNG+ + + LY AQ++ +R+ L ++ Q
Sbjct: 228 GHSRCFGFVNFEKHEEAQKAVVHMNGKEVSGRLLYAGRAQKRVERQNELKRRFEQ 282
>UNIPROTKB|Q7ZWM3 [details] [associations]
symbol:tnrc4-b "CUGBP Elav-like family member 3-B"
species:8355 "Xenopus laevis" [GO:0048026 "positive regulation of
mRNA splicing, via spliceosome" evidence=ISS] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0005634 GO:GO:0005737 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:Q92879 HOVERGEN:HBG107646
KO:K13207 GO:GO:0048026 EMBL:BC046942 RefSeq:NP_001080695.1
UniGene:Xl.12160 ProteinModelPortal:Q7ZWM3 SMR:Q7ZWM3 GeneID:380387
KEGG:xla:380387 CTD:380387 Xenbase:XB-GENE-5796640 Uniprot:Q7ZWM3
Length = 462
Score = 113 (44.8 bits), Expect = 0.00078, P = 0.00078
Identities = 58/205 (28%), Positives = 84/205 (40%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNG-RII--GSKPLYVALAQRKEDRKAHLASQYMQR 60
DG SKG FV F + EA A+ ++G R + S L V A +++R + MQ+
Sbjct: 131 DGTSKGCAFVKFQTHTEAQAAINALHGSRTLPGASSSLVVKFADTEKER----GLRRMQQ 186
Query: 61 IANMRMQQMGQLFQPGST--GGYFVPT------LPQPQRFYGPTQMTQIRPQPRWAAAP- 111
+AN Q+G +F P + G Y T L Q Q Q + P AA
Sbjct: 187 VAN----QLG-MFSPIALQFGAYSAYTQAVSDQLMQQQAALVAAQSAYLNPMATMAAVQM 241
Query: 112 -QM---RPSGQTAQGFPNIPQFRSAPRASTGQTVIRGANMSARPITGQSTMGPRGGGPMQ 167
QM P+G A I S+ ST T + +SA P +T+G G +
Sbjct: 242 QQMATINPNGIIATPITQINSITSSSGTSTPPT-LTATPVSAIP----ATLGVNGYSAVP 296
Query: 168 APGPASVSAAGRQTGGYNKYPVRNP 192
S+ T G + YP ++P
Sbjct: 297 TQSTVQPSSEAIYTNGLHPYPAQSP 321
>UNIPROTKB|K7EML2 [details] [associations]
symbol:RBM42 "RNA-binding protein 42" species:9606 "Homo
sapiens" [GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
Gene3D:3.30.70.330 EMBL:AC002115 HGNC:HGNC:28117
Ensembl:ENST00000586618 Uniprot:K7EML2
Length = 184
Score = 105 (42.0 bits), Expect = 0.00081, P = 0.00081
Identities = 17/43 (39%), Positives = 30/43 (69%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47
G++KG+GFV F P + +A+ EMNG+ +GS+P+ + + K+
Sbjct: 123 GKTKGYGFVSFKDPSDYVRAMREMNGKYVGSRPIKLRKSMWKD 165
>UNIPROTKB|F1P5J4 [details] [associations]
symbol:BRUNOL6 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR012677 Pfam:PF00076 PROSITE:PS50102 SMART:SM00360
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003676
GeneTree:ENSGT00560000076837 EMBL:AADN02051058 EMBL:AADN02051059
IPI:IPI00591656 Ensembl:ENSGALT00000003051 Uniprot:F1P5J4
Length = 354
Score = 111 (44.1 bits), Expect = 0.00086, P = 0.00086
Identities = 57/199 (28%), Positives = 88/199 (44%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGR--IIG-SKPLYVALAQRKEDRKAHLASQYMQR 60
DG SKG FV +SS EA A++ ++G + G S L V A ++R + M +
Sbjct: 39 DGASKGCAFVKYSSHAEAQAAISSLHGSQTMPGASSSLVVKFADTDKERTL----RRMHQ 94
Query: 61 IANMRMQQMGQLFQP-----GSTGGYFVPTLPQPQRFYGPTQMTQIRPQPRWAAAPQMRP 115
+A Q+G +F P G+ G Y + Q Q T + P AAA QM+
Sbjct: 95 MAG----QLG-IFNPMTIQFGAYGAYTQAIMQQQAALMAAAQGTCLNPMAAIAAA-QMQ- 147
Query: 116 SGQTAQGFPNIPQFRSAPRA-STGQTVIRGANMSARPITGQST-MGPRGGGPMQAPGPAS 173
Q A F N+ +AP S+G + G +S P+ +T +G G P+
Sbjct: 148 --QMA-AF-NVSGLVAAPLTPSSGTSTPPG--ISTAPVPSIATPIGVNGFSPLPPQTNGQ 201
Query: 174 VSAAGRQTGGYNKYPVRNP 192
++ T G + YP ++P
Sbjct: 202 PTSETIYTNGIHPYPAQSP 220
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.382 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 303 262 0.00091 114 3 11 22 0.37 34
32 0.49 36
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 122
No. of states in DFA: 590 (63 KB)
Total size of DFA: 168 KB (2098 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 24.34u 0.07s 24.41t Elapsed: 00:00:15
Total cpu time: 24.37u 0.07s 24.44t Elapsed: 00:00:18
Start: Thu Aug 15 12:08:46 2013 End: Thu Aug 15 12:09:04 2013
WARNINGS ISSUED: 1