RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14476
(303 letters)
>d1nmra_ a.144.1.1 (A:) poly(A) binding protein {Protozoan
(Trypanosoma cruzi) [TaxId: 5693]}
Length = 85
Score = 131 bits (330), Expect = 2e-39
Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 212 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 271
++ QGQ ST+LA P++QK +LGERL+ I + P A K+TGMLLE+DN E+L
Sbjct: 3 SLASQGQN--LSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILN 60
Query: 272 MLEHNESLKSKVEEAVAVLQAHQ 294
+L+ L +KV+EA+ VL H
Sbjct: 61 LLDTPGLLDAKVQEALEVLNRHM 83
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 130 bits (329), Expect = 2e-38
Identities = 87/145 (60%), Positives = 97/145 (66%), Gaps = 10/145 (6%)
Query: 159 GPRGGGPMQAPGPASVSAAGRQTGGYNKYPVRNPGTQPQAQIGGIQPAAAGVQAVHVQGQ 218
GP G P +V G VRNP AQ AVHVQGQ
Sbjct: 1 GPLGSAAAATPAVRTVPQYKYAAG------VRNPQQHLNAQ----PQVTMQQPAVHVQGQ 50
Query: 219 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 278
EPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+MLE ES
Sbjct: 51 EPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPES 110
Query: 279 LKSKVEEAVAVLQAHQAKQAAVKKE 303
L+SKV+EAVAVLQAHQAK+AA K
Sbjct: 111 LRSKVDEAVAVLQAHQAKEAAQKAV 135
>d1ifwa_ a.144.1.1 (A:) poly(A) binding protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 114 bits (288), Expect = 6e-33
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 220 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMY--PELAGKITGMLLEIDNAELLYMLEHNE 277
P + Q+Q+Q LGE+L+ + E AGKITGM+L++ E+ +LE +E
Sbjct: 6 PRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDE 65
Query: 278 SLKSKVEEAVAVLQAHQAKQAAVKKE 303
+ +EA A ++ + +Q ++
Sbjct: 66 LFEQHYKEASAAYESFKKEQEQQTEQ 91
>d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 112 bits (282), Expect = 2e-32
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 234 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 293
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 1 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 60
>d2dita1 d.58.7.1 (A:8-106) HIV Tat-specific factor 1 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 99
Score = 58.4 bits (141), Expect = 1e-11
Identities = 12/47 (25%), Positives = 18/47 (38%)
Query: 4 DGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
D G V F PEEA + ++GR G + + D +
Sbjct: 53 DRHPDGVASVSFRDPEEADYCIQTLDGRWFGGRQITAQAWDGTTDYQ 99
>d1nu4a_ d.58.7.1 (A:) Splicesomal U1A protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 91
Score = 57.0 bits (137), Expect = 2e-11
Identities = 15/53 (28%), Positives = 23/53 (43%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHL 53
+S + +G FV F AT A+ M G KP+ + A+ D A +
Sbjct: 39 VSRSLKMRGQAFVIFKEVSSATNALRSMQGFPFYDKPMRIQYAKTDSDIIAKM 91
>d2f9da1 d.58.7.1 (A:12-125) Pre-mRNA branch site protein p14 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 114
Score = 56.9 bits (137), Expect = 5e-11
Identities = 7/68 (10%), Positives = 26/68 (38%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQR 60
+ ++G +V + +A A ++G + ++ L V + + ++
Sbjct: 39 VGNTPETRGTAYVVYEDIFDAKNACDHLSGFNVCNRYLVVLYYNANRAFQKMDTKKKEEQ 98
Query: 61 IANMRMQQ 68
+ ++ +
Sbjct: 99 LKLLKEKY 106
>d2cpza1 d.58.7.1 (A:383-484) CUG triplet repeat RNA-binding protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 55.5 bits (133), Expect = 1e-10
Identities = 21/50 (42%), Positives = 26/50 (52%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+ SK FGFV + +P A A+ MNG IG K L V L + K D K
Sbjct: 53 DKQTNLSKCFGFVSYDNPVSAQAAIQSMNGFQIGMKRLKVQLKRSKNDSK 102
>d1x5sa1 d.58.7.1 (A:8-97) Cold-inducible RNA-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 54.0 bits (129), Expect = 3e-10
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
+GFGFV F + ++A A+ MNG+ + + + V A + D ++
Sbjct: 47 RGFGFVTFENIDDAKDAMMAMNGKSVDGRQIRVDQAGKSSDNRS 90
>d2cpfa1 d.58.7.1 (A:362-446) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 85
Score = 52.0 bits (124), Expect = 1e-09
Identities = 15/47 (31%), Positives = 25/47 (53%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47
+ S GFGFV + PE+A KA+ ++ G + L V +++R
Sbjct: 36 KAGVLLSMGFGFVEYKKPEQAQKALKQLQGHTVDGHKLEVRISERAT 82
>d2cpha1 d.58.7.1 (A:454-547) Probable RNA-binding protein 19,
Rbm19 {Mouse (Mus musculus) [TaxId: 10090]}
Length = 94
Score = 52.2 bits (125), Expect = 1e-09
Identities = 12/47 (25%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEM-NGRIIGSKPLYVALAQRKEDRK 50
G +GFGFV F + ++A KA + + + + L + A + +
Sbjct: 48 GAHRGFGFVDFITKQDAKKAFNALCHSTHLYGRRLVLEWADSEVTVQ 94
>d1cvja1 d.58.7.1 (A:11-90) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 80
Score = 51.5 bits (123), Expect = 2e-09
Identities = 15/45 (33%), Positives = 24/45 (53%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQR 45
RS G+ +V F P +A +A+ MN +I KP+ + +QR
Sbjct: 35 DMITRRSLGYAYVNFQQPADAERALDTMNFDVIKGKPVRIMWSQR 79
>d1u1qa_ d.58.7.1 (A:) Nuclear ribonucleoprotein A1 (RNP A1, UP1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 183
Score = 53.9 bits (128), Expect = 2e-09
Identities = 11/49 (22%), Positives = 18/49 (36%), Gaps = 1/49 (2%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G+ +GF FV F + K V + V A K++ +
Sbjct: 134 GSGKKRGFAFVTFDDHDSVDKIV-IQKYHTVNGHNCEVRKALSKQEMAS 181
>d1x5ta1 d.58.7.1 (A:8-90) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 50.1 bits (119), Expect = 6e-09
Identities = 14/44 (31%), Positives = 29/44 (65%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
SKG+ F+ F+S + + A+ MNG+ + ++P+ V+ A +K+ +
Sbjct: 39 NSKGYAFINFASFDASDAAIEAMNGQYLCNRPITVSYAFKKDSK 82
>d1wf2a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoproteins
C1/C2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 98
Score = 50.3 bits (120), Expect = 8e-09
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 9 GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
GF FV + + A AV +GR+I + L + LA + +
Sbjct: 51 GFAFVQYVNERNARAAVAGEDGRMIAGQVLDINLAAEPKVNR 92
>d1cvja2 d.58.7.1 (A:91-179) Poly(A)-binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 89
Score = 48.9 bits (116), Expect = 2e-08
Identities = 15/49 (30%), Positives = 32/49 (65%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+ ++ SKG+GFV F + E A +A+ +MNG ++ + ++V + +++R
Sbjct: 41 VCDENGSKGYGFVHFETQEAAERAIEKMNGMLLNDRKVFVGRFKSRKER 89
>d2disa1 d.58.7.1 (A:8-103) Hypothetical protein FLJ20273 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 96
Score = 48.9 bits (116), Expect = 2e-08
Identities = 10/52 (19%), Positives = 20/52 (38%), Gaps = 2/52 (3%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGR--IIGSKPLYVALAQRKEDRKAHLASQ 56
++GF FV + S A A ++ + + V A+ + D +
Sbjct: 44 NRGFAFVEYESHRAAAMARRKLMPGRIQLWGHQIAVDWAEPEIDVDEDVMET 95
>d1h2vz_ d.58.7.1 (Z:) CBP20, 20KDa nuclear cap-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 48.4 bits (115), Expect = 3e-08
Identities = 12/46 (26%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ-RKEDRK 50
+ GF FV + S +A A+ +NG + + + KE R+
Sbjct: 47 TACGFCFVEYYSRADAENAMRYINGTRLDDRIIRTDWDAGFKEGRQ 92
>d2u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 85
Score = 48.1 bits (114), Expect = 3e-08
Identities = 12/41 (29%), Positives = 18/41 (43%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
SKG+ F + +A+ +NG +G K L V A
Sbjct: 41 LSKGYAFCEYVDINVTDQAIAGLNGMQLGDKKLLVQRASVG 81
>d2cpda1 d.58.7.1 (A:223-308) APOBEC1 stimulating protein {Human
(Homo sapiens) [TaxId: 9606]}
Length = 86
Score = 48.1 bits (114), Expect = 3e-08
Identities = 13/45 (28%), Positives = 27/45 (60%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+ + + FV FS+ E+A +A+ +NG+++ P+ V LA+ +
Sbjct: 41 KKIRDYAFVHFSNREDAVEAMKALNGKVLDGSPIEVTLAKPVDKD 85
>d2cqpa1 d.58.7.1 (A:917-1002) RNA-binding protein 12 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 86
Score = 47.7 bits (113), Expect = 4e-08
Identities = 17/43 (39%), Positives = 24/43 (55%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43
+E G G V F S +EAT AV ++N R IGS+ + + L
Sbjct: 44 YNEKGMPTGEAMVAFESRDEATAAVIDLNDRPIGSRKVKLVLG 86
>d2cqga1 d.58.7.1 (A:96-185) TAR DNA-binding protein 43, TDP-43
{Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 47.7 bits (113), Expect = 5e-08
Identities = 13/43 (30%), Positives = 22/43 (51%), Gaps = 2/43 (4%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
SKGFGFV F+ E K +++ + +I + L K+ +
Sbjct: 49 SKGFGFVRFTEYETQVKVMSQRH--MIDGRWCDCKLPNSKQSQ 89
>d1o0pa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 48.1 bits (114), Expect = 5e-08
Identities = 9/48 (18%), Positives = 18/48 (37%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+ G FV F+S + KA+ + GR ++ + +
Sbjct: 53 VEVPGCGKIFVEFTSVFDCQKAMQGLTGRKFANRVVVTKYCDPDSYHR 100
>d1b7fa2 d.58.7.1 (A:205-289) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 85
Score = 47.6 bits (113), Expect = 5e-08
Identities = 18/45 (40%), Positives = 26/45 (57%), Gaps = 2/45 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALA 43
GR +G FV ++ EEA +A++ +N I GS+PL V LA
Sbjct: 41 DKLTGRPRGVAFVRYNKREEAQEAISALNNVIPEGGSQPLSVRLA 85
>d1p1ta_ d.58.7.1 (A:) Cleavage stimulation factor, 64 kda subunit
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 47.4 bits (112), Expect = 8e-08
Identities = 12/42 (28%), Positives = 22/42 (52%)
Query: 9 GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
G+GF + E A A+ +NGR + L V A +++++
Sbjct: 51 GYGFCEYQDQETALSAMRNLNGREFSGRALRVDNAASEKNKE 92
>d1whwa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 99
Score = 46.6 bits (110), Expect = 1e-07
Identities = 17/50 (34%), Positives = 27/50 (54%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
S + KGF FV F PE A KA E++G++ + L+V + K++
Sbjct: 43 DSLTKKPKGFAFVTFMFPEHAVKAYAEVDGQVFQGRMLHVLPSTIKKEAS 92
>d1fjca_ d.58.7.1 (A:) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 96
Score = 46.6 bits (110), Expect = 1e-07
Identities = 14/50 (28%), Positives = 25/50 (50%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+S+DG+SKG ++ F S +A K + E G I + + + K +
Sbjct: 46 VSQDGKSKGIAYIEFKSEADAEKNLEEKQGAEIDGRSVSLYYTGEKGGTR 95
>d1no8a_ d.58.7.1 (A:) Nuclear factor Aly {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 78
Score = 46.1 bits (109), Expect = 1e-07
Identities = 9/35 (25%), Positives = 16/35 (45%)
Query: 10 FGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
V F +A KA+ + NG + +P+ + L
Sbjct: 43 TADVHFERKADALKAMKQYNGVPLDGRPMNIQLVT 77
>d1weya_ d.58.7.1 (A:) Calcipressin-1 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 104
Score = 46.3 bits (109), Expect = 2e-07
Identities = 11/47 (23%), Positives = 18/47 (38%)
Query: 8 KGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLA 54
+ FS+P A A ++ K + + AQ +HLA
Sbjct: 46 FKRVRINFSNPLSAADARLRLHKTEFLGKEMKLYFAQTLHIGSSHLA 92
>d2cqia1 d.58.7.1 (A:1-90) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 90
Score = 45.8 bits (108), Expect = 2e-07
Identities = 15/50 (30%), Positives = 23/50 (46%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
++E + + FV F +A A+ MNGR I K + V A +K
Sbjct: 41 ITEHTSNDPYCFVEFYEHRDAAAALAAMNGRKILGKEVKVNWATTPSSQK 90
>d2ghpa3 d.58.7.1 (A:206-291) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 86
Score = 45.5 bits (107), Expect = 2e-07
Identities = 12/46 (26%), Positives = 26/46 (56%), Gaps = 1/46 (2%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
E + F+ F + + A +A+ +MN ++G++ + V+LA +K
Sbjct: 41 QKEHSFNNCCAFMVFENKDSAERAL-QMNRSLLGNREISVSLADKK 85
>d1x4ba1 d.58.7.1 (A:8-110) Heterogeneous nuclear ribonucleoproteins
A2/B1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 45.8 bits (108), Expect = 3e-07
Identities = 15/45 (33%), Positives = 21/45 (46%), Gaps = 1/45 (2%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
RS+GFGFV FSS E A+ I + + A +E+
Sbjct: 59 KRSRGFGFVTFSSMAEVDAAM-AARPHSIDGRVVEPKRAVAREES 102
>d2cpea1 d.58.7.1 (A:353-453) RNA-binding protein EWS {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 45.2 bits (106), Expect = 5e-07
Identities = 15/47 (31%), Positives = 22/47 (46%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
E G+ KG V + P A AV +G+ L V+LA++K
Sbjct: 53 ETGKPKGDATVSYEDPPTAKAAVEWFDGKDFQGSKLKVSLARKKPPM 99
>d2cpja1 d.58.7.1 (A:65-150) Non-POU domain-containing
octamer-binding protein, NonO {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 86
Score = 44.6 bits (105), Expect = 6e-07
Identities = 10/37 (27%), Positives = 15/37 (40%)
Query: 10 FGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
FGF+ + A A E++ + K L V A
Sbjct: 46 FGFIRLETRTLAEIAKVELDNMPLRGKQLRVRFACHS 82
>d2cqba1 d.58.7.1 (A:1-89) Peptidyl-prolyl cis-trans isomerase E,
N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}
Length = 89
Score = 44.7 bits (105), Expect = 6e-07
Identities = 13/44 (29%), Positives = 22/44 (50%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
+GF FV F E+A A+ MN + + + V LA+ ++
Sbjct: 46 HRGFAFVEFELAEDAAAAIDNMNESELFGRTIRVNLAKPMRIKE 89
>d2cq3a1 d.58.7.1 (A:110-202) RNA-binding protein 9 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 93
Score = 44.7 bits (105), Expect = 7e-07
Identities = 13/48 (27%), Positives = 26/48 (54%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48
+ + SKGFGFV F + +A +A +++G ++ + + V A +
Sbjct: 44 IFNERGSKGFGFVTFENSADADRAREKLHGTVVEGRKIEVNNATARVM 91
>d2cq0a1 d.58.7.1 (A:231-320) Eukaryotic translation initiation
factor 3 subunit 4 {Human (Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 44.3 bits (104), Expect = 7e-07
Identities = 13/42 (30%), Positives = 21/42 (50%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48
SKGF F+ F E+A +A+ ++G L V A+ +
Sbjct: 49 SKGFAFISFHRREDAARAIAGVSGFGYDHLILNVEWAKPSTN 90
>d1b7fa1 d.58.7.1 (A:123-204) Sex-lethal protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 82
Score = 43.4 bits (102), Expect = 1e-06
Identities = 14/44 (31%), Positives = 26/44 (59%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
+ G S G+ FV F+S ++ +A+ +NG + +K L V+ A+
Sbjct: 37 DYKTGYSYGYAFVDFTSEMDSQRAIKVLNGITVRNKRLKVSYAR 80
>d1x5ua1 d.58.7.1 (A:7-99) Splicing factor 3B subunit 4 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 93
Score = 43.5 bits (102), Expect = 2e-06
Identities = 15/47 (31%), Positives = 23/47 (48%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKE 47
G+ +G+GFV F S E+A A+ M+ + KP+ V A
Sbjct: 44 DRVTGQHQGYGFVEFLSEEDADYAIKIMDMIKLYGKPIRVNKASAHN 90
>d1fxla1 d.58.7.1 (A:37-118) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 82
Score = 43.2 bits (101), Expect = 2e-06
Identities = 15/44 (34%), Positives = 27/44 (61%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
G+S G+GFV + P++A KA+ +NG + +K + V+ A+
Sbjct: 37 DKITGQSLGYGFVNYIDPKDAEKAINTLNGLRLQTKTIKVSYAR 80
>d1fxla2 d.58.7.1 (A:119-203) Hu antigen D (Hud) {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 42.7 bits (100), Expect = 2e-06
Identities = 14/45 (31%), Positives = 23/45 (51%), Gaps = 2/45 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIG--SKPLYVALA 43
G S+G GF+ F EA +A+ +NG+ ++P+ V A
Sbjct: 41 DQVTGVSRGVGFIRFDKRIEAEEAIKGLNGQKPSGATEPITVKFA 85
>d1uawa_ d.58.7.1 (A:) Musashi-1 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 77
Score = 42.7 bits (100), Expect = 2e-06
Identities = 12/43 (27%), Positives = 18/43 (41%), Gaps = 1/43 (2%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43
RS+GFGFV F K + + + SK + +A
Sbjct: 35 DPLTKRSRGFGFVTFMDQAGVDKVL-AQSRHELDSKTIDPKVA 76
>d1x4ga1 d.58.7.1 (A:8-103) Nucleolysin TIAR {Human (Homo sapiens)
[TaxId: 9606]}
Length = 96
Score = 43.0 bits (101), Expect = 3e-06
Identities = 13/44 (29%), Positives = 19/44 (43%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
KG+ FV FS+ E A A+ +NG I + + D
Sbjct: 52 PEKGYSFVRFSTHESAAHAIVSVNGTTIEGHVVKCYWGKESPDM 95
>d2bz2a1 d.58.7.1 (A:35-113) Negative elongation factor E, NELF-E
{Human (Homo sapiens) [TaxId: 9606]}
Length = 79
Score = 42.3 bits (99), Expect = 3e-06
Identities = 13/42 (30%), Positives = 22/42 (52%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
+ FV + E A +AV E+NG + S L V +A+++
Sbjct: 36 DPPRNCAFVTYEKMESADQAVAELNGTQVESVQLKVNIARKQ 77
>d1x4aa1 d.58.7.1 (A:9-103) Splicing factor, arginine/serine-rich
1, SFRS1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 95
Score = 42.4 bits (99), Expect = 4e-06
Identities = 12/51 (23%), Positives = 16/51 (31%), Gaps = 2/51 (3%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
+ F FV F P +A AV +G L V + R
Sbjct: 46 LKNRRGGPPFAFVEFEDPRDAEDAVYGRDGYDYDGYRLRVEFP--RSGRGT 94
>d2cqha1 d.58.7.1 (A:2-81) IGF-II mRNA-binding protein 2 isoform A
{Human (Homo sapiens) [TaxId: 9606]}
Length = 80
Score = 41.6 bits (97), Expect = 5e-06
Identities = 10/46 (21%), Positives = 22/46 (47%), Gaps = 1/46 (2%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRI-IGSKPLYVALAQRKEDR 49
G+ FV + A +A+ ++G++ + K + V + K+ R
Sbjct: 34 LLKSGYAFVDYPDQNWAIRAIETLSGKVELHGKIMEVDYSVSKKLR 79
>d2cq4a1 d.58.7.1 (A:132-232) RNA binding protein 23 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 101
Score = 41.9 bits (98), Expect = 7e-06
Identities = 12/44 (27%), Positives = 23/44 (52%), Gaps = 1/44 (2%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
RSKG +V F + A+ + G+ + P+ V +Q +++R
Sbjct: 58 RSKGIAYVEFCEIQSVPLAI-GLTGQRLLGVPIIVQASQAEKNR 100
>d2adba1 d.58.7.1 (A:177-284) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 108
Score = 41.9 bits (98), Expect = 8e-06
Identities = 6/44 (13%), Positives = 17/44 (38%), Gaps = 2/44 (4%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRII--GSKPLYVALAQRKE 47
++ + ++ P A A ++G+ I L + ++
Sbjct: 43 NNQFQALLQYADPVSAQHAKLSLDGQNIYNACCTLRIDFSKLTS 86
>d1wf0a_ d.58.7.1 (A:) TAR DNA-binding protein 43, TDP-43 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 41.2 bits (96), Expect = 8e-06
Identities = 9/42 (21%), Positives = 17/42 (40%), Gaps = 2/42 (4%)
Query: 9 GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRK 50
F FV F+ + A II ++++ A+ K +
Sbjct: 43 AFAFVTFADDQIAQSLC--GEDLIIKGISVHISNAEPKHNSN 82
>d2cpya1 d.58.7.1 (A:536-638) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 103
Score = 41.4 bits (96), Expect = 1e-05
Identities = 8/50 (16%), Positives = 24/50 (48%), Gaps = 1/50 (2%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAH 52
+G+ G V F + ++A K+ ++ + + + +V + ++ R+
Sbjct: 45 NNGQGLGQALVQFKNEDDARKSE-RLHRKKLNGREAFVHVVTLEDMREIE 93
>d1wg4a_ d.58.7.1 (A:) Splicing factor, arginine/serine-rich 9
(SFRS9) {Mouse (Mus musculus) [TaxId: 10090]}
Length = 98
Score = 40.9 bits (95), Expect = 1e-05
Identities = 6/42 (14%), Positives = 16/42 (38%)
Query: 10 FGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
G V + E+ A+ +++ S + + +R +
Sbjct: 52 MGMVEYLRKEDMEYALRKLDDTKFRSHEGETSYIRVYPERSS 93
>d2cqda1 d.58.7.1 (A:1-103) RNA-binding region containing protein
1 {Human (Homo sapiens) [TaxId: 9606]}
Length = 103
Score = 40.9 bits (95), Expect = 2e-05
Identities = 14/51 (27%), Positives = 24/51 (47%), Gaps = 1/51 (1%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
+ G+S+G+GFV + A +A + N I G + V LA ++
Sbjct: 45 DRQTGKSRGYGFVTMADRAAAERACKDPNPIIDG-RKANVNLAYLGAKPRS 94
>d1l3ka1 d.58.7.1 (A:8-91) Nuclear ribonucleoprotein A1 (RNP A1,
UP1) {Human (Homo sapiens) [TaxId: 9606]}
Length = 84
Score = 40.4 bits (94), Expect = 2e-05
Identities = 11/39 (28%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 5 GRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43
RS+GFGFV +++ EE A+ + + + A
Sbjct: 45 KRSRGFGFVTYATVEEVDAAM-NARPHKVDGRVVEPKRA 82
>d1rk8a_ d.58.7.1 (A:) RNA-binding protein 8 {Fruit fly
(Drosophila melanogaster) [TaxId: 7227]}
Length = 88
Score = 39.7 bits (92), Expect = 3e-05
Identities = 11/40 (27%), Positives = 19/40 (47%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
SKG+ V + + ++A A +NG I + + V K
Sbjct: 48 SKGYALVEYETHKQALAAKEALNGAEIMGQTIQVDWCFVK 87
>d2cqca1 d.58.7.1 (A:109-191) Arginine/serine-rich splicing factor
10 {Human (Homo sapiens) [TaxId: 9606]}
Length = 83
Score = 39.3 bits (91), Expect = 4e-05
Identities = 11/34 (32%), Positives = 19/34 (55%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYV 40
S+GF FV F + ++A +A NG + + + V
Sbjct: 50 SRGFAFVYFENVDDAKEAKERANGMELDGRRIRV 83
>d2msta_ d.58.7.1 (A:) Neural RNA-binding protein Musashi-1 {Mouse
(Mus musculus) [TaxId: 10090]}
Length = 75
Score = 38.9 bits (90), Expect = 4e-05
Identities = 13/43 (30%), Positives = 19/43 (44%), Gaps = 1/43 (2%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43
R +GFGFV F S + K E++ I +K + A
Sbjct: 34 DKTTNRHRGFGFVTFESEDIVEKVC-EIHFHEINNKMVECKKA 75
>d1x5oa1 d.58.7.1 (A:8-108) RNA-binding motif,
single-stranded-interacting protein 1, RBMS1 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 39.8 bits (92), Expect = 4e-05
Identities = 11/39 (28%), Positives = 17/39 (43%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
S+G GF S E+ + NG+ I + P A +
Sbjct: 57 TSRGVGFARMESTEKCEAVIGHFNGKFIKTPPGVSAPTE 95
>d1hd0a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein d0
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 38.8 bits (90), Expect = 5e-05
Identities = 13/41 (31%), Positives = 18/41 (43%), Gaps = 1/41 (2%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43
GRS+GFGFV F E K + + + K + A
Sbjct: 36 ITGRSRGFGFVLFKESESVDKVM-DQKEHKLNGKVIDPKRA 75
>d2cq1a1 d.58.7.1 (A:51-138) Polypyrimidine tract-binding protein
2, PTBP2 {Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 39.1 bits (90), Expect = 6e-05
Identities = 8/40 (20%), Positives = 17/40 (42%), Gaps = 2/40 (5%)
Query: 10 FGFVCFSSPEEATKAVTEM--NGRIIGSKPLYVALAQRKE 47
F+ ++ E A V + ++P+Y+ + KE
Sbjct: 46 QAFLELATEEAAITMVNYYSAVTPHLRNQPIYIQYSNHKE 85
>d1wexa_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein
L-like {Mouse (Mus musculus) [TaxId: 10090]}
Length = 104
Score = 39.4 bits (91), Expect = 6e-05
Identities = 7/43 (16%), Positives = 14/43 (32%), Gaps = 2/43 (4%)
Query: 10 FGFVCFSSPEEATKAVTEM--NGRIIGSKPLYVALAQRKEDRK 50
V F + + A + VT I + + + K +
Sbjct: 53 QALVEFENIDSAKECVTFAADVPVYIAGQQAFFNYSTSKRITR 95
>d1jmta_ d.58.7.3 (A:) U2AF35
(35 KDa subunit) {Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 39.2 bits (91), Expect = 6e-05
Identities = 12/40 (30%), Positives = 19/40 (47%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVAL 42
G +V F E+A KAV ++N R +P++ L
Sbjct: 63 LGDHLVGNVYVKFRREEDAEKAVIDLNNRWFNGQPIHAEL 102
>d2cpxa1 d.58.7.1 (A:291-392) RNA-binding protein 41, RBM41 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 102
Score = 39.0 bits (90), Expect = 7e-05
Identities = 12/43 (27%), Positives = 22/43 (51%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+G F+ F + E A +A+ +NG + K L + + K+ R
Sbjct: 59 MRGQAFITFPNKEIAWQALHLVNGYKLYGKILVIEFGKNKKQR 101
>d1wg1a_ d.58.7.1 (A:) Probable RNA-binding protein KIAA1579
{Human (Homo sapiens) [TaxId: 9606]}
Length = 88
Score = 38.6 bits (89), Expect = 8e-05
Identities = 10/40 (25%), Positives = 15/40 (37%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
+K FV + E+A A+ + K L V L
Sbjct: 39 NKRTAFVTLLNGEQAQNAIQMFHQYSFRGKDLIVQLQPTD 78
>d1x4ha1 d.58.7.1 (A:8-105) RNA-binding protein 28 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 98
Score = 38.6 bits (89), Expect = 8e-05
Identities = 13/49 (26%), Positives = 21/49 (42%), Gaps = 6/49 (12%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMN------GRIIGSKPLYVALAQRKEDR 49
SKG F F + E A K + + G + + L V LA +++
Sbjct: 49 SKGCAFAQFMTQEAAQKCLAAASLEAEGGGLKLDGRQLKVDLAVTRDEA 97
>d1wwha1 d.58.7.1 (A:169-249) Nucleoporin 35 {Mouse (Mus musculus)
[TaxId: 10090]}
Length = 81
Score = 38.0 bits (88), Expect = 1e-04
Identities = 10/48 (20%), Positives = 18/48 (37%), Gaps = 2/48 (4%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKP-LYVALAQRKE 47
+ + + + S +A KA+ +GRI G + V K
Sbjct: 32 KHVMSNTGNWMHIRYQSKLQARKAL-SKDGRIFGESIMIGVKPCIDKN 78
>d1x0fa1 d.58.7.1 (A:183-257) Nuclear ribonucleoprotein D0 (AUF1)
{Human (Homo sapiens) [TaxId: 9606]}
Length = 75
Score = 37.6 bits (87), Expect = 1e-04
Identities = 9/37 (24%), Positives = 15/37 (40%), Gaps = 1/37 (2%)
Query: 7 SKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALA 43
+GF F+ F E K + E +G + +A
Sbjct: 40 RRGFCFITFKEEEPVKKIM-EKKYHNVGLSKCEIKVA 75
>d2ghpa1 d.58.7.1 (A:116-196) U4/U6 snRNA-associated-splicing
factor PRP24 {Baker's yeast (Saccharomyces cerevisiae)
[TaxId: 4932]}
Length = 81
Score = 37.5 bits (86), Expect = 2e-04
Identities = 10/39 (25%), Positives = 19/39 (48%)
Query: 6 RSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQ 44
S+ F ++ +S E+A V ++NG I L ++
Sbjct: 41 TSRRFAYIDVTSKEDARYCVEKLNGLKIEGYTLVTKVSN 79
>d1fjeb1 d.58.7.1 (B:1-91) Nucleolin {Golden hamster (Mesocricetus
auratus) [TaxId: 10036]}
Length = 91
Score = 37.6 bits (86), Expect = 2e-04
Identities = 10/46 (21%), Positives = 21/46 (45%), Gaps = 1/46 (2%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRK 46
G ++ FG+V F S E+ KA+ + G + + + + +
Sbjct: 47 DVRTGTNRKFGYVDFESAEDLEKALE-LTGLKVFGNEIKLEKPKGR 91
>d1wela1 d.58.7.1 (A:412-523) RNA-binding protein 12 {Human (Homo
sapiens) [TaxId: 9606]}
Length = 112
Score = 37.9 bits (87), Expect = 2e-04
Identities = 10/49 (20%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
+G++ G GFV F + + A+ + + +G++ + V +K +
Sbjct: 55 PNGKATGEGFVEFRNEADYKAAL-CRHKQYMGNRFIQVHPITKKGMLEK 102
>d2cq2a1 d.58.7.1 (A:25-125) Alkylation repair AlkB homolog 8,
ALKBH8 {Human (Homo sapiens) [TaxId: 9606]}
Length = 101
Score = 37.4 bits (86), Expect = 2e-04
Identities = 8/40 (20%), Positives = 18/40 (45%), Gaps = 5/40 (12%)
Query: 10 FGFVCFSSPEEATKAVTEMNGRIIG-----SKPLYVALAQ 44
+ F + + EE+ +A +NG+ + LY+ +
Sbjct: 58 YSFARYRTTEESKRAYVTLNGKEVVDDLGQKITLYLNFVE 97
>d1u6fa1 d.58.7.1 (A:1-139) RNA-binding protein UBP1 {Trypanosoma
cruzi [TaxId: 5693]}
Length = 139
Score = 37.6 bits (86), Expect = 4e-04
Identities = 17/40 (42%), Positives = 22/40 (55%)
Query: 10 FGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDR 49
+GFV F S A +A+ +NG I +K L VALA R
Sbjct: 86 YGFVKFQSGSSAQQAIAGLNGFNILNKRLKVALAASGHQR 125
>d2adca1 d.58.7.1 (A:335-443) Polypyrimidine tract-binding protein
{Human (Homo sapiens) [TaxId: 9606]}
Length = 109
Score = 36.7 bits (84), Expect = 5e-04
Identities = 11/68 (16%), Positives = 28/68 (41%)
Query: 10 FGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKAHLASQYMQRIANMRMQQM 69
V + +A A++ +NG + KP+ + L++ + + + + +
Sbjct: 42 NALVQMADGNQAQLAMSHLNGHKLHGKPIRITLSKHQNVQLPREGQEDQGLTKDYGNSPL 101
Query: 70 GQLFQPGS 77
+ +PGS
Sbjct: 102 HRFKKPGS 109
>d1u2fa_ d.58.7.1 (A:) Splicing factor U2AF 65 KDa subunit {Human
(Homo sapiens) [TaxId: 9606]}
Length = 90
Score = 35.9 bits (82), Expect = 8e-04
Identities = 11/40 (27%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYV 40
+ + K F F+ F S +E T+A+ +G I + L +
Sbjct: 41 AVQINQDKNFAFLEFRSVDETTQAMA-FDGIIFQGQSLKI 79
>d1x4ea1 d.58.7.1 (A:8-79) RNA-binding motif,
single-stranded-interacting protein 2, RBMS2 {Human
(Homo sapiens) [TaxId: 9606]}
Length = 72
Score = 34.7 bits (79), Expect = 0.001
Identities = 10/27 (37%), Positives = 14/27 (51%)
Query: 12 FVCFSSPEEATKAVTEMNGRIIGSKPL 38
FV F SP A KAVT + + ++
Sbjct: 44 FVDFDSPSAAQKAVTALKASGVQAQMA 70
>d1wg5a_ d.58.7.1 (A:) Heterogeneous nuclear ribonucleoprotein H'
{Human (Homo sapiens) [TaxId: 9606]}
Length = 104
Score = 35.2 bits (80), Expect = 0.002
Identities = 17/49 (34%), Positives = 25/49 (51%), Gaps = 1/49 (2%)
Query: 3 EDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
GRS G FV F+S E A KA+ + IG + + + + R E R +
Sbjct: 52 FQGRSTGEAFVQFASQEIAEKALK-KHKERIGHRYIEIFKSSRAEVRTS 99
>d2b0ga1 d.58.7.1 (A:1-83) Splicesomal U1A protein {Drosophila
melanogaster [TaxId: 7227]}
Length = 83
Score = 34.1 bits (77), Expect = 0.002
Identities = 7/37 (18%), Positives = 18/37 (48%), Gaps = 1/37 (2%)
Query: 10 FGFVCFSSPEEATKAVTEMNG-RIIGSKPLYVALAQR 45
FV F++ ++ A + G +I + + + A++
Sbjct: 47 IAFVEFTTELQSNAAKEALQGFKITPTHAMKITFAKK 83
>d1whya_ d.58.7.1 (A:) Putative RNA-binding protein 15B, Rbm15b
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 97
Score = 34.3 bits (78), Expect = 0.003
Identities = 10/39 (25%), Positives = 18/39 (46%), Gaps = 2/39 (5%)
Query: 10 FGFVCFSSPEEATKAVTEMNGRIIG--SKPLYVALAQRK 46
F ++ + S + A A +M G +G + L V A+
Sbjct: 55 FAYIQYESLDAAQAACAKMRGFPLGGPDRRLRVDFAKSG 93
>d1zh5a2 d.58.7.1 (A:105-189) Lupus LA protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 85
Score = 33.6 bits (76), Expect = 0.005
Identities = 15/48 (31%), Positives = 19/48 (39%), Gaps = 4/48 (8%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKED 48
+ KG FV F S E A K V E G+ L + K+D
Sbjct: 40 RTLHKAFKGSIFVVFDSIESAKKFV-ETPGQKYKETDLLI---LFKDD 83
>d1whxa_ d.58.7.1 (A:) Probable RNA-binding protein 19, Rbm19
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 111
Score = 33.0 bits (74), Expect = 0.010
Identities = 12/43 (27%), Positives = 14/43 (32%)
Query: 9 GFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVALAQRKEDRKA 51
V F P EA KA + PLY+ A A
Sbjct: 47 ITAIVEFLEPLEARKAFRHLAYSKFHHVPLYLEWAPIGVFGAA 89
>d2cpia1 d.58.7.1 (A:101-189) E3 ubiquitin protein ligase CNOT4
{Mouse (Mus musculus) [TaxId: 10090]}
Length = 89
Score = 32.5 bits (73), Expect = 0.010
Identities = 6/41 (14%), Positives = 17/41 (41%)
Query: 1 MSEDGRSKGFGFVCFSSPEEATKAVTEMNGRIIGSKPLYVA 41
+ +V + E+A +A+ +N ++ + L +
Sbjct: 49 YAGSQGPSASAYVTYIRSEDALRAIQCVNNVVVDGRTLKAS 89
>d1x4da1 d.58.7.1 (A:8-96) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 89
Score = 31.2 bits (70), Expect = 0.033
Identities = 11/43 (25%), Positives = 21/43 (48%), Gaps = 2/43 (4%)
Query: 10 FGFVCFSSPEEATKAV--TEMNGRIIGSKPLYVALAQRKEDRK 50
F+ ++ E+A AV ++ KP+ V L+Q+ + K
Sbjct: 47 EAFIEMATTEDAQAAVDYYTTTPALVFGKPVRVHLSQKYKRIK 89
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 29.9 bits (67), Expect = 0.23
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 246 IQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS-KVEEAVAVLQA 292
+ ++ PEL GK+TGM + A + + K K ++ V++
Sbjct: 66 VGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQ 113
>d1x4fa1 d.58.7.1 (A:8-106) Matrin 3 {Mouse (Mus musculus) [TaxId:
10090]}
Length = 99
Score = 27.3 bits (59), Expect = 0.95
Identities = 6/42 (14%), Positives = 15/42 (35%), Gaps = 2/42 (4%)
Query: 9 GFGFVCFSSPEEATKAVT--EMNGRIIGSKPLYVALAQRKED 48
F+ + E+A V + + V L+++ +
Sbjct: 56 SQAFIEMETREDAMAMVDHCLKKALWFQGRCVKVDLSEKYKK 97
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 28.0 bits (62), Expect = 1.0
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 246 IQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS-KVEEAVAVLQA 292
+ + PEL GK+ G + + + + + ++ VEE +L+A
Sbjct: 66 VGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKA 113
>d1r2fa_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Salmonella
typhimurium [TaxId: 90371]}
Length = 283
Score = 27.4 bits (60), Expect = 2.2
Identities = 3/15 (20%), Positives = 7/15 (46%)
Query: 56 QYMQRIANMRMQQMG 70
++ AN + +G
Sbjct: 247 AFLCYNANKALMNLG 261
>d1jk0b_ a.25.1.2 (B:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y4 [TaxId: 4932]}
Length = 285
Score = 27.5 bits (60), Expect = 2.2
Identities = 4/20 (20%), Positives = 9/20 (45%)
Query: 51 AHLASQYMQRIANMRMQQMG 70
Y++ +A+ +Q G
Sbjct: 261 LKSIHTYIEFVADGLLQGFG 280
>d1mxra_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Escherichia coli
[TaxId: 562]}
Length = 339
Score = 27.4 bits (60), Expect = 2.3
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 51 AHLASQYMQRIANMRMQQMG 70
+ QY++ I N+RMQ +G
Sbjct: 301 KDILCQYVEYITNIRMQAVG 320
>d1otga_ d.80.1.2 (A:) 5-carboxymethyl-2-hydroxymuconate isomerase
(CHMI) {Escherichia coli [TaxId: 562]}
Length = 125
Score = 26.3 bits (58), Expect = 2.5
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 226 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML-LEID 265
+ A + E +Q GE LF LI+ + L L EI+
Sbjct: 67 IGAGRSLESRQQAGEMLFELIKTHFAALMESRLLALSFEIE 107
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 26.8 bits (59), Expect = 2.7
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 246 IQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS-KVEEAVAVLQA 292
+ + PEL GK+ GM + + + + E K VEE A L+A
Sbjct: 65 VALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKA 112
>d1w68a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Mouse (Mus
musculus) [TaxId: 10090]}
Length = 281
Score = 27.1 bits (59), Expect = 3.0
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 51 AHLASQYMQRIANMRMQQMG 70
L QY++ +A+ M ++G
Sbjct: 251 CTLMKQYIEFVADRLMLELG 270
>d3dhza1 a.25.1.2 (A:14-297) Ribonucleotide reductase R2
{Corynebacterium ammoniagenes [TaxId: 1697]}
Length = 284
Score = 26.6 bits (58), Expect = 3.3
Identities = 3/16 (18%), Positives = 9/16 (56%)
Query: 55 SQYMQRIANMRMQQMG 70
++++ AN + +G
Sbjct: 248 KRFLRYNANKALNNLG 263
>d1jk0a_ a.25.1.2 (A:) Ribonucleotide reductase R2 {Baker's yeast
(Saccharomyces cerevisiae), Y2 [TaxId: 4932]}
Length = 334
Score = 26.6 bits (58), Expect = 4.4
Identities = 6/20 (30%), Positives = 12/20 (60%)
Query: 51 AHLASQYMQRIANMRMQQMG 70
A L +QY++ +A+ + G
Sbjct: 299 ADLMNQYVEFVADRLLVAFG 318
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 25.6 bits (56), Expect = 5.9
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 246 IQRMYPELAGKITGM 260
+ + P L GK+ G+
Sbjct: 65 VALVLPNLKGKLNGI 79
>d1ut9a1 a.102.1.2 (A:306-816) Cellulose 1,4-beta-cellobiosidase
CbhA {Clostridium thermocellum [TaxId: 1515]}
Length = 511
Score = 25.9 bits (56), Expect = 7.7
Identities = 6/34 (17%), Positives = 10/34 (29%)
Query: 90 QRFYGPTQMTQIRPQPRWAAAPQMRPSGQTAQGF 123
R+ + PQPR+ + A
Sbjct: 166 FRWTALGMLPHEDPQPRYLRPVSTAATLNFAATL 199
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.374
Gapped
Lambda K H
0.267 0.0511 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,031,680
Number of extensions: 45677
Number of successful extensions: 202
Number of sequences better than 10.0: 1
Number of HSP's gapped: 191
Number of HSP's successfully gapped: 98
Length of query: 303
Length of database: 2,407,596
Length adjustment: 85
Effective length of query: 218
Effective length of database: 1,240,546
Effective search space: 270439028
Effective search space used: 270439028
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 53 (24.7 bits)