BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14477
(112 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 35.8 bits (81), Expect = 0.007, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 37/81 (45%), Gaps = 1/81 (1%)
Query: 29 SLYPSFAEVARTR-LREEGTKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMM 87
++ S +V +TR + +Y S T+ +EG R Y+G +R +M
Sbjct: 217 TVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMF 276
Query: 88 ATYEAVVYVLTAYYQNRDNTF 108
TYE + L A YQ+R+ F
Sbjct: 277 VTYEQLKRALMAAYQSREAPF 297
Score = 34.3 bits (77), Expect = 0.017, Method: Compositional matrix adjust.
Identities = 16/48 (33%), Positives = 26/48 (54%)
Query: 46 GTKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMMATYEAV 93
G +Y+S + T+A EEG RGL++G S + R + TY+ +
Sbjct: 141 GRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLI 188
Score = 33.1 bits (74), Expect = 0.041, Method: Compositional matrix adjust.
Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 11/69 (15%)
Query: 36 EVARTRLREEG-----------TKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTA 84
+ A+ RL+ +G +Y+ T+ T+ EG R LY GL L RQ+ +
Sbjct: 23 DTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFAS 82
Query: 85 IMMATYEAV 93
+ + Y++V
Sbjct: 83 VRIGLYDSV 91
>pdb|3V1Z|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V1Z|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V20|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V20|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|A Chain A, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|B Chain B, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|C Chain C, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|D Chain D, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|E Chain E, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|F Chain F, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|G Chain G, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
pdb|3V21|H Chain H, Crystal Structure Of Type Iif Restriction Endonuclease
Bse634i With Cognate Dna
Length = 293
Score = 28.5 bits (62), Expect = 0.99, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%)
Query: 17 GKPKLDFSVLMFSLYPSFAEVARTRLREEGTKYKSFFQTLATVAHEEGARGLYRGLSTQL 76
GK K D V L S R +L EG KS F L A Y G S++
Sbjct: 184 GKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMAYWNPKAEFKYYGASSEP 243
Query: 77 IRQIPNTAIMMATYEAVVYVLTAYYQNRDNTF 108
+ + + A+ A +V V + + D+ F
Sbjct: 244 VSKADDDALQTAATHTIVNVNSTPERAVDDIF 275
>pdb|1KY8|A Chain A, Crystal Structure Of The Non-Phosphorylating
Glyceraldehyde-3- Phosphate Dehydrogenase
Length = 501
Score = 27.7 bits (60), Expect = 1.6, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 6 GVWGGNLQENLGKPKLDFSVLMFSLYPSFAEVART 40
G WGG+ QE K +D + + + PS EV RT
Sbjct: 25 GEWGGSGQEIEVKSPIDLATIAKVISPSREEVERT 59
>pdb|1UXV|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
Length = 501
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 6 GVWGGNLQENLGKPKLDFSVLMFSLYPSFAEVART 40
G WGG+ QE K +D + + + PS EV RT
Sbjct: 25 GEWGGSGQEIEVKSPIDLATIAKVISPSREEVERT 59
>pdb|1UXN|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
pdb|1UXP|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
pdb|1UXQ|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
pdb|1UXR|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
pdb|1UXT|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-phosphorylating
Glyceraldehyde-3-phosphate Dehydrogenase (gapn) From
Thermoproteus Tenax
pdb|1UXU|A Chain A, Structural Basis For Allosteric Regulation And Substrate
Specificity Of The Non-Phosphorylating
Glyceraldehyde-3-Phosphate Dehydrogenase (Gapn) From
Thermoproteus Tenax
Length = 501
Score = 27.7 bits (60), Expect = 1.7, Method: Composition-based stats.
Identities = 14/35 (40%), Positives = 19/35 (54%)
Query: 6 GVWGGNLQENLGKPKLDFSVLMFSLYPSFAEVART 40
G WGG+ QE K +D + + + PS EV RT
Sbjct: 25 GEWGGSGQEIEVKSPIDLATIAKVISPSREEVERT 59
>pdb|1KNV|A Chain A, Bse634i Restriction Endonuclease
pdb|1KNV|B Chain B, Bse634i Restriction Endonuclease
Length = 293
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 25/92 (27%), Positives = 36/92 (39%)
Query: 17 GKPKLDFSVLMFSLYPSFAEVARTRLREEGTKYKSFFQTLATVAHEEGARGLYRGLSTQL 76
GK K D V L S R +L EG KS F L A Y G S++
Sbjct: 184 GKCKWDSLVAGVGLKTSLRPDRRLQLVHEGNILKSLFAHLKMRYWNPKAEFKYYGASSEP 243
Query: 77 IRQIPNTAIMMATYEAVVYVLTAYYQNRDNTF 108
+ + + A+ A +V V + + D+ F
Sbjct: 244 VSKADDDALQTAATHTIVNVNSTPERAVDDIF 275
>pdb|3TTS|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTS|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus
pdb|3TTY|A Chain A, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|B Chain B, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|C Chain C, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|D Chain D, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|E Chain E, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
pdb|3TTY|F Chain F, Crystal Structure Of Beta-Galactosidase From Bacillus
Circulans Sp. Alkalophilus In Complex With Galactose
Length = 675
Score = 26.6 bits (57), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 13/46 (28%), Positives = 26/46 (56%)
Query: 11 NLQENLGKPKLDFSVLMFSLYPSFAEVARTRLREEGTKYKSFFQTL 56
+++E+L K K+ + +M+ + P FAE + + GT +FF +
Sbjct: 445 SVEEDLSKYKVVIAPVMYMVKPGFAERVERFVAQGGTFVTTFFSGI 490
>pdb|4ASC|A Chain A, Crystal Structure Of The Kelch Domain Of Human Kbtbd5
Length = 315
Score = 26.2 bits (56), Expect = 4.3, Method: Compositional matrix adjust.
Identities = 17/59 (28%), Positives = 24/59 (40%), Gaps = 4/59 (6%)
Query: 52 FFQTLATVAHEEGARGLYRGLS----TQLIRQIPNTAIMMATYEAVVYVLTAYYQNRDN 106
F Q L + EEGA + L Q+P + + T E V+V + N DN
Sbjct: 2 FLQDLIFMISEEGAVAYDPAANECYXASLSSQVPKNHVSLVTKENQVFVAGGLFYNEDN 60
>pdb|1E4G|T Chain T, Ftsa (Atp-Bound Form) From Thermotoga Maritima
Length = 419
Score = 25.8 bits (55), Expect = 6.1, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 13 QENLGKPKLDFSVLMFSLYPSFAEVARTRLREEGTKYKSFFQTLATVAHEEGARGLYRGL 72
+E + LD + + + + + RLRE +K K FF+ + EEG G+ G+
Sbjct: 273 EEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIXSKSKKFFREVEAKIVEEGEIGIPGGV 332
>pdb|1E4F|T Chain T, Ftsa (Apo Form) From Thermotoga Maritima
pdb|4A2A|A Chain A, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2A|B Chain B, Thermotoga Maritima Ftsa:ftsz(336-351)
pdb|4A2B|A Chain A, Thermotoga Maritima Ftsa With Atp Gamma S
Length = 419
Score = 25.4 bits (54), Expect = 8.5, Method: Composition-based stats.
Identities = 16/60 (26%), Positives = 28/60 (46%)
Query: 13 QENLGKPKLDFSVLMFSLYPSFAEVARTRLREEGTKYKSFFQTLATVAHEEGARGLYRGL 72
+E + LD + + + + + RLRE +K K FF+ + EEG G+ G+
Sbjct: 273 EEEIQYRGLDGNTIKTTTAKKLSVIIHARLREIMSKSKKFFREVEAKIVEEGEIGIPGGV 332
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.320 0.134 0.390
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,073,995
Number of Sequences: 62578
Number of extensions: 98708
Number of successful extensions: 258
Number of sequences better than 100.0: 11
Number of HSP's better than 100.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 246
Number of HSP's gapped (non-prelim): 13
length of query: 112
length of database: 14,973,337
effective HSP length: 76
effective length of query: 36
effective length of database: 10,217,409
effective search space: 367826724
effective search space used: 367826724
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 45 (21.9 bits)