Query psy14477
Match_columns 112
No_of_seqs 121 out of 1397
Neff 8.5
Searched_HMMs 29240
Date Fri Aug 16 20:50:05 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14477.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14477hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 99.8 4.1E-20 1.4E-24 132.6 2.3 85 15-101 205-290 (303)
2 2lck_A Mitochondrial uncouplin 99.7 2.1E-18 7.2E-23 123.7 7.4 84 15-100 107-195 (303)
3 1okc_A ADP, ATP carrier protei 99.7 6E-18 2.1E-22 120.8 8.7 84 14-99 9-100 (297)
4 1okc_A ADP, ATP carrier protei 99.7 3.9E-18 1.3E-22 121.8 7.2 82 16-99 116-203 (297)
5 3tgu_G UQCRQ, mitochondrial ub 83.3 2.2 7.6E-05 24.5 4.2 46 63-108 32-77 (81)
6 1pp9_G Ubiquinol-cytochrome C 82.6 2.6 8.9E-05 24.2 4.4 46 63-108 32-77 (81)
7 3f2e_A SIRV coat protein; four 44.5 13 0.00046 21.2 1.9 38 43-80 2-43 (100)
8 3cx5_H Cytochrome B-C1 complex 37.8 34 0.0011 20.1 3.0 38 63-100 42-79 (93)
9 2a3d_A Protein (de novo three- 32.8 59 0.002 17.3 3.7 38 35-72 11-48 (73)
10 2czy_A Paired amphipathic heli 30.5 5.8 0.0002 22.3 -1.1 25 34-58 10-34 (77)
11 2cr7_A Paired amphipathic heli 28.9 5.6 0.00019 22.6 -1.4 24 34-57 16-39 (80)
12 1e91_A Paired amphipathic heli 28.0 6 0.0002 22.7 -1.4 30 34-64 13-42 (85)
13 2acm_A Mucin-1; auto-catalytic 25.4 9.3 0.00032 20.7 -0.8 20 50-69 40-59 (66)
14 1g1e_B SIN3A; four-helix bundl 25.3 12 0.00042 21.6 -0.4 26 34-59 16-41 (89)
15 2f05_A Paired amphipathic heli 22.3 15 0.00052 22.0 -0.4 29 34-63 13-41 (105)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.78 E-value=4.1e-20 Score=132.62 Aligned_cols=85 Identities=24% Similarity=0.312 Sum_probs=74.5
Q ss_pred ccCCchhHHHHHHHHhCCchhHHHHHHHHhCC-CCCCCHHHHHHHHHHHhChhhcccChHHHHHHHHHHHhHHHHHHHHH
Q psy14477 15 NLGKPKLDFSVLMFSLYPSFAEVARTRLREEG-TKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMMATYEAV 93 (112)
Q Consensus 15 ~l~~~~~~~~~~~~~~~P~~~d~ik~r~q~~~-~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~r~~~~~~~~f~~ye~~ 93 (112)
.+.+++.+++.+.++++| +|++|+|+|.+. ..|+++++++++|+++||++|||||+.++++|.+|.++++|.+||.+
T Consensus 205 ~~~~g~~ag~~~~~~~~P--~dvvktrlq~~~~~~y~~~~~~~~~i~~~eG~~glyrG~~~~~~r~~p~~~i~f~~ye~~ 282 (303)
T 2lck_A 205 HFTSAFGAGFCTTVIASP--VDVVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQL 282 (303)
T ss_dssp HHHHHHHHHHHHHHHHHH--HHHHHHHHTTCCSSSCCSHHHHHHHHHHSSCTHHHHSCCHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCH--HHHHHHHHHhccccccCCHHHHHHHHHHHcChHHhhccHHHHHHHHHhHHHHHHHHHHHH
Confidence 344556666677779999 999999999984 46899999999999999999999999999999999999999999999
Q ss_pred HHHHHhhc
Q psy14477 94 VYVLTAYY 101 (112)
Q Consensus 94 k~~~~~~~ 101 (112)
|+.+.+..
T Consensus 283 k~~l~~~~ 290 (303)
T 2lck_A 283 KRALMAAY 290 (303)
T ss_dssp HSCCCCHH
T ss_pred HHHHHHhc
Confidence 98775443
No 2
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.75 E-value=2.1e-18 Score=123.67 Aligned_cols=84 Identities=24% Similarity=0.375 Sum_probs=74.2
Q ss_pred ccCCchhHHHHHHHHhCCchhHHHHHHHHhCCC-----CCCCHHHHHHHHHHHhChhhcccChHHHHHHHHHHHhHHHHH
Q psy14477 15 NLGKPKLDFSVLMFSLYPSFAEVARTRLREEGT-----KYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMMAT 89 (112)
Q Consensus 15 ~l~~~~~~~~~~~~~~~P~~~d~ik~r~q~~~~-----~~~~~~~~~~~i~~~~G~~gly~G~~~~~~r~~~~~~~~f~~ 89 (112)
.+.+++.+++.+.++++| +|++|+|+|.+.. .|+++++++++|+++||++|||||+.++++|.+|.++++|.+
T Consensus 107 ~~~ag~~ag~~~~~~~~P--ld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ 184 (303)
T 2lck_A 107 RLLAGSTTGALAVAVAQP--TDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVT 184 (303)
T ss_dssp HHHHHHHHHHHHHHHSCH--HHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHcCc--HHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHH
Confidence 344555666666779999 9999999999843 689999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHhh
Q psy14477 90 YEAVVYVLTAY 100 (112)
Q Consensus 90 ye~~k~~~~~~ 100 (112)
||.+|+.+.+.
T Consensus 185 ye~~k~~l~~~ 195 (303)
T 2lck_A 185 YDLIKDTLLKA 195 (303)
T ss_dssp HHHHHHTTTTT
T ss_pred HHHHHHHHHhc
Confidence 99999988643
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.74 E-value=6e-18 Score=120.81 Aligned_cols=84 Identities=17% Similarity=0.292 Sum_probs=74.6
Q ss_pred cccCCchhHHHHHHHHhCCchhHHHHHHHHhCC--------CCCCCHHHHHHHHHHHhChhhcccChHHHHHHHHHHHhH
Q psy14477 14 ENLGKPKLDFSVLMFSLYPSFAEVARTRLREEG--------TKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAI 85 (112)
Q Consensus 14 ~~l~~~~~~~~~~~~~~~P~~~d~ik~r~q~~~--------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~r~~~~~~~ 85 (112)
..+.+++.+++.+.++++| +|++|+|+|.+. ..|+++++++++++++||++|||||+.+.+++.+|.+++
T Consensus 9 ~~~~aG~~ag~~~~~~~~P--ld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~ 86 (297)
T 1okc_A 9 KDFLAGGVAAAISKTAVAP--IERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQAL 86 (297)
T ss_dssp HHHHHHHHHHHHHHHHTHH--HHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHhcCc--HHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHH
Confidence 4455677777777789999 999999999973 258999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHh
Q psy14477 86 MMATYEAVVYVLTA 99 (112)
Q Consensus 86 ~f~~ye~~k~~~~~ 99 (112)
+|.+||.+|+.+.+
T Consensus 87 ~f~~ye~~k~~~~~ 100 (297)
T 1okc_A 87 NFAFKDKYKQIFLG 100 (297)
T ss_dssp HHHHHHHHHHHHHT
T ss_pred HHHHHHHHHHHhcc
Confidence 99999999996543
No 4
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.74 E-value=3.9e-18 Score=121.80 Aligned_cols=82 Identities=22% Similarity=0.374 Sum_probs=72.3
Q ss_pred cCCchhHHHHHHHHhCCchhHHHHHHHHhCC------CCCCCHHHHHHHHHHHhChhhcccChHHHHHHHHHHHhHHHHH
Q psy14477 16 LGKPKLDFSVLMFSLYPSFAEVARTRLREEG------TKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMMAT 89 (112)
Q Consensus 16 l~~~~~~~~~~~~~~~P~~~d~ik~r~q~~~------~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~r~~~~~~~~f~~ 89 (112)
+.+++.+++.+.++++| +|++|+|+|.+. ..|+++++++++|+++||++|||||+.++++|.+|.++++|.+
T Consensus 116 ~~ag~~ag~~~~~~~~P--ld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ 193 (297)
T 1okc_A 116 LASGGAAGATSLCFVYP--LDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGV 193 (297)
T ss_dssp HHHHHHHHHHHHHHHHH--HHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHhCc--HHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHH
Confidence 44555666666679999 999999999983 3588999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHh
Q psy14477 90 YEAVVYVLTA 99 (112)
Q Consensus 90 ye~~k~~~~~ 99 (112)
||.+|+.+.+
T Consensus 194 ye~~k~~~~~ 203 (297)
T 1okc_A 194 YDTAKGMLPD 203 (297)
T ss_dssp HHHHHHSSCG
T ss_pred HHHHHHHhcc
Confidence 9999997643
No 5
>3tgu_G UQCRQ, mitochondrial ubiquinol-cytochrome C reductase UB binding protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein; HET: HEM WF3 UQ CDL PEE HEC BOG; 2.70A {Gallus gallus} PDB: 3cwb_G* 3h1i_G* 3h1h_G* 3h1k_G* 3h1l_G* 3h1j_G* 3l71_G* 3l72_G* 3l73_G* 3l74_G* 3l75_G* 3l70_G*
Probab=83.29 E-value=2.2 Score=24.54 Aligned_cols=46 Identities=11% Similarity=0.158 Sum_probs=35.1
Q ss_pred hChhhcccChHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCCCCC
Q psy14477 63 EGARGLYRGLSTQLIRQIPNTAIMMATYEAVVYVLTAYYQNRDNTF 108 (112)
Q Consensus 63 ~G~~gly~G~~~~~~r~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~ 108 (112)
+|+...+|-+..++...+|...+.+.+|++.++.-.....+++..+
T Consensus 32 ~~i~N~~RR~~~q~l~v~pPfi~~Y~i~~Wa~~~ne~l~rKnpady 77 (81)
T 3tgu_G 32 DALPNVWRRFSSQVFKVAPPFLGAYLLYSWGTQEFERLKRKNPADY 77 (81)
T ss_dssp CCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCCGGGS
T ss_pred hhhhHHHHHHHHhhhHhhHHHHHHHHHHHHHHHHHHHHhCCCHHHh
Confidence 4555556667778888999999999999999998876655555444
No 6
>1pp9_G Ubiquinol-cytochrome C reductase complex ubiquino protein QP-C; cytochrome BC1, membrane protein, heme protein, rieske iron protein, cytochrome B, complex III; HET: BHG HEM HEC SMA UQ CDL PEE; 2.10A {Bos taurus} SCOP: f.23.13.1 PDB: 1bgy_G* 1be3_G* 1l0n_G* 1ntk_G* 1ntm_G* 1ntz_G* 1nu1_G* 1l0l_G* 1ppj_G* 1sqb_G* 1sqp_G* 1sqq_G* 1sqv_G* 1sqx_G* 2a06_G* 2fyu_G* 2ybb_G* 1bcc_G* 2bcc_G* 3bcc_G* ...
Probab=82.57 E-value=2.6 Score=24.23 Aligned_cols=46 Identities=11% Similarity=0.166 Sum_probs=35.4
Q ss_pred hChhhcccChHHHHHHHHHHHhHHHHHHHHHHHHHHhhcCCCCCCC
Q psy14477 63 EGARGLYRGLSTQLIRQIPNTAIMMATYEAVVYVLTAYYQNRDNTF 108 (112)
Q Consensus 63 ~G~~gly~G~~~~~~r~~~~~~~~f~~ye~~k~~~~~~~~~~~~~~ 108 (112)
+|+...+|-+..++...+|...+.+.+|++.++.-.....+++..+
T Consensus 32 ~~i~n~~RR~~~~~l~v~pPfv~~Y~i~~Wa~~~~e~~~rKnp~d~ 77 (81)
T 1pp9_G 32 KGIPNVLRRTRACILRVAPPFVAFYLVYTWGTQEFEKSKRKNPAAY 77 (81)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSSCC---
T ss_pred hhhhHHHHHHHhcceeeehhHHHHHHHHHHHHHHHHHHhCCCHHHh
Confidence 5666667778888889999999999999999998876665555544
No 7
>3f2e_A SIRV coat protein; four helix bundle, virus coat protein, viral protein; HET: CIT; 1.67A {Sulfolobus islandicus rudivirus 1 variorganism_taxid}
Probab=44.48 E-value=13 Score=21.22 Aligned_cols=38 Identities=18% Similarity=0.468 Sum_probs=22.1
Q ss_pred HhCCCCCCCHHHHHHHHHHHhCh----hhcccChHHHHHHHH
Q psy14477 43 REEGTKYKSFFQTLATVAHEEGA----RGLYRGLSTQLIRQI 80 (112)
Q Consensus 43 q~~~~~~~~~~~~~~~i~~~~G~----~gly~G~~~~~~r~~ 80 (112)
|..-+++.++-+-+..++.+-|+ +.+|+|+...+.|..
T Consensus 2 qtnvpkftsvne~vsavltqygvtgpnraiyqgfglkvaral 43 (100)
T 3f2e_A 2 QTNVPKFTAVAEQVSAVLSQYGITGPNRAIYQGFGLKVARAL 43 (100)
T ss_dssp ------CHHHHHHHHHHHHHHTCCGGGHHHHHHHHHHHHHHH
T ss_pred CCCCccchhHHHHHHHHHHHhcCCCccHHHHhhhhHHHHHHH
Confidence 44434566666666666666664 678888887777754
No 8
>3cx5_H Cytochrome B-C1 complex subunit 8; complex III, electron transfer complex, cytochrome BC1 complex, mitochondrialtransmembrane complex; HET: M3L SUC 6PH UMQ HEM SMA 8PE 9PE CN5 7PH CN3; 1.90A {Saccharomyces cerevisiae} SCOP: f.23.13.1 PDB: 1kb9_H* 1kyo_H* 1p84_H* 1ezv_G* 3cxh_H* 2ibz_G*
Probab=37.79 E-value=34 Score=20.05 Aligned_cols=38 Identities=8% Similarity=0.011 Sum_probs=31.7
Q ss_pred hChhhcccChHHHHHHHHHHHhHHHHHHHHHHHHHHhh
Q psy14477 63 EGARGLYRGLSTQLIRQIPNTAIMMATYEAVVYVLTAY 100 (112)
Q Consensus 63 ~G~~gly~G~~~~~~r~~~~~~~~f~~ye~~k~~~~~~ 100 (112)
+|+...+|-+..+++..+|...+.+.+|++.++.....
T Consensus 42 ~~i~N~~RR~~~q~l~v~pPfv~~Y~i~~Wa~~~~e~l 79 (93)
T 3cx5_H 42 NAVFNSFRRFKSQFLYVLIPAGIYWYWWKNGNEYNEFL 79 (93)
T ss_dssp TTSSSCSHHHHTTHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred hcchHHHHHHHhcceEEechHhHHHHHHHHHHHHHHHH
Confidence 67777778888888889999999999999999876543
No 9
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=32.82 E-value=59 Score=17.29 Aligned_cols=38 Identities=21% Similarity=0.202 Sum_probs=23.4
Q ss_pred hHHHHHHHHhCCCCCCCHHHHHHHHHHHhChhhcccCh
Q psy14477 35 AEVARTRLREEGTKYKSFFQTLATVAHEEGARGLYRGL 72 (112)
Q Consensus 35 ~d~ik~r~q~~~~~~~~~~~~~~~i~~~~G~~gly~G~ 72 (112)
+..+|+|+|.-++.-..+...-++|..-|.-.--|+|-
T Consensus 11 laaiktrlqalggseaelaafekeiaafeselqaykgk 48 (73)
T 2a3d_A 11 LAAIKTRLQALGGSEAELAAFEKEIAAFESELQAYKGK 48 (73)
T ss_dssp HHHHHHHHHHCSSGGGTHHHHHHHHHHHHHHHHHSSSC
T ss_pred HHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHhccC
Confidence 67799999998654444555455555544444456653
No 10
>2czy_A Paired amphipathic helix protein SIN3B; SIN3, PAH1, transcriptional repressor, gene regulation; NMR {Mus musculus}
Probab=30.50 E-value=5.8 Score=22.32 Aligned_cols=25 Identities=12% Similarity=0.486 Sum_probs=17.7
Q ss_pred hhHHHHHHHHhCCCCCCCHHHHHHH
Q psy14477 34 FAEVARTRLREEGTKYKSFFQTLAT 58 (112)
Q Consensus 34 ~~d~ik~r~q~~~~~~~~~~~~~~~ 58 (112)
+++.||.|.|.++..|....+.++.
T Consensus 10 yl~~VK~~F~~~p~~Y~~FL~im~~ 34 (77)
T 2czy_A 10 YLDQVKIRFGSDPATYNGFLEIMKE 34 (77)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHH
Confidence 5788999999875566666665553
No 11
>2cr7_A Paired amphipathic helix protein SIN3B; paired amphipathic helix repeat, transcriptional repressor, structural genomics, NPPSFA; NMR {Mus musculus} PDB: 2rmr_A 2rms_A
Probab=28.86 E-value=5.6 Score=22.58 Aligned_cols=24 Identities=13% Similarity=0.508 Sum_probs=17.0
Q ss_pred hhHHHHHHHHhCCCCCCCHHHHHH
Q psy14477 34 FAEVARTRLREEGTKYKSFFQTLA 57 (112)
Q Consensus 34 ~~d~ik~r~q~~~~~~~~~~~~~~ 57 (112)
+++.||.|.|.++..|..+.++++
T Consensus 16 yl~~VK~rF~~~p~~Y~~FL~im~ 39 (80)
T 2cr7_A 16 YLDQVKIRFGSDPATYNGFLEIMK 39 (80)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHH
Confidence 478899999876555666666555
No 12
>1e91_A Paired amphipathic helix protein SIN3B; eukaryotic transcriptional regulation, SIN3, PAH domains, protein-protein interactions; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1pd7_A
Probab=28.02 E-value=6 Score=22.74 Aligned_cols=30 Identities=23% Similarity=0.461 Sum_probs=22.1
Q ss_pred hhHHHHHHHHhCCCCCCCHHHHHHHHHHHhC
Q psy14477 34 FAEVARTRLREEGTKYKSFFQTLATVAHEEG 64 (112)
Q Consensus 34 ~~d~ik~r~q~~~~~~~~~~~~~~~i~~~~G 64 (112)
++..||.|.|.++..|..+.++++ .++++.
T Consensus 13 yv~kVK~rF~~~p~~Y~~FL~il~-~yk~~~ 42 (85)
T 1e91_A 13 YVNKIKTRFLDHPEIYRSFLEILH-TYQKEQ 42 (85)
T ss_dssp HHHHHHHHTSSCHHHHHHHHHHHH-HHHHTT
T ss_pred HHHHHHHHHhcChHHHHHHHHHHH-HHHHcc
Confidence 478899999987677888887776 445443
No 13
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=25.45 E-value=9.3 Score=20.67 Aligned_cols=20 Identities=15% Similarity=0.277 Sum_probs=16.6
Q ss_pred CCHHHHHHHHHHHhChhhcc
Q psy14477 50 KSFFQTLATVAHEEGARGLY 69 (112)
Q Consensus 50 ~~~~~~~~~i~~~~G~~gly 69 (112)
+++...+..|++++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56778888999999988875
No 14
>1g1e_B SIN3A; four-helix bundle, protein-peptide complex, transcription; NMR {Mus musculus} SCOP: a.59.1.1 PDB: 1s5q_B 1s5r_B 2l9s_B
Probab=25.26 E-value=12 Score=21.59 Aligned_cols=26 Identities=23% Similarity=0.501 Sum_probs=20.2
Q ss_pred hhHHHHHHHHhCCCCCCCHHHHHHHH
Q psy14477 34 FAEVARTRLREEGTKYKSFFQTLATV 59 (112)
Q Consensus 34 ~~d~ik~r~q~~~~~~~~~~~~~~~i 59 (112)
++..||+|.|.++..|+.++++++.-
T Consensus 16 YvnkVK~rF~~~p~~Y~~FL~IL~~y 41 (89)
T 1g1e_B 16 YVNKIKNRFQGQPDIYKAFLEILHTY 41 (89)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHHHH
Confidence 47789999998877788887777744
No 15
>2f05_A Paired amphipathic helix protein SIN3B; helix bundle, transcription repressor; NMR {Mus musculus} SCOP: a.59.1.1
Probab=22.29 E-value=15 Score=21.95 Aligned_cols=29 Identities=24% Similarity=0.488 Sum_probs=21.6
Q ss_pred hhHHHHHHHHhCCCCCCCHHHHHHHHHHHh
Q psy14477 34 FAEVARTRLREEGTKYKSFFQTLATVAHEE 63 (112)
Q Consensus 34 ~~d~ik~r~q~~~~~~~~~~~~~~~i~~~~ 63 (112)
++..||+|.|.++..|+.++++++ .++.+
T Consensus 13 YvnkVK~rF~d~p~vY~~FL~IL~-~yk~~ 41 (105)
T 2f05_A 13 YVNKIKTRFLDHPEIYRSFLEILH-TYQKE 41 (105)
T ss_dssp HHHHHHHHTTTCHHHHHHHHHHHH-HHHHH
T ss_pred HHHHHHHHHccChHHHHHHHHHHH-HHHhc
Confidence 478899999988777888888776 44443
Done!