RPS-BLAST 2.2.26 [Sep-21-2011]
Database: CDD.v3.10
44,354 sequences; 10,937,602 total letters
Searching..................................................done
Query= psy14477
(112 letters)
>gnl|CDD|215754 pfam00153, Mito_carr, Mitochondrial carrier protein.
Length = 96
Score = 65.4 bits (160), Expect = 2e-15
Identities = 26/70 (37%), Positives = 32/70 (45%), Gaps = 6/70 (8%)
Query: 28 FSLYPSFAEVARTRL----REEGTKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNT 83
YP +V +TRL KYK + EEG RGLY+GL L+R P
Sbjct: 21 TVTYP--LDVVKTRLQSSAAGGSRKYKGILDCFKKIYKEEGIRGLYKGLLPNLLRVAPAA 78
Query: 84 AIMMATYEAV 93
AI TYE +
Sbjct: 79 AIYFGTYETL 88
>gnl|CDD|152168 pfam11732, Thoc2, Transcription- and export-related complex
subunit. The THO/TREX complex is the transcription-
and export-related complex associated with spliceosomes
that preferentially deal with spliced mRNAs as opposed
to unspliced mRNAs. Thoc2 plays a role in RNA
polymerase II (RNA pol II)-dependent transcription and
is required for the stability of DNA repeats. In
humans, the TRE complex is comprised of the
exon-junction-associated proteins Aly/REF and UAP56
together with the THO proteins THOC1 (hHpr1/p84), Thoc2
(hRlr1), THOC3 (hTex1), THOC5 (fSAP79), THOC6 (fSAP35),
and THOC7 (fSAP24). Although much evidence indicates
that the function of the TREX complex as an adaptor
between the mRNA and components of the export machinery
is conserved among eukaryotes, in Drosophila the
majority of mRNAs can be exported from the nucleus
independently of the THO complex.
Length = 77
Score = 29.2 bits (66), Expect = 0.16
Identities = 15/38 (39%), Positives = 21/38 (55%)
Query: 21 LDFSVLMFSLYPSFAEVARTRLREEGTKYKSFFQTLAT 58
L + VL F L S R+RL+E+GT + Q LA+
Sbjct: 40 LGYDVLTFVLLESLTNSGRSRLQEDGTNISLWLQALAS 77
>gnl|CDD|240302 PTZ00169, PTZ00169, ADP/ATP transporter on adenylate translocase;
Provisional.
Length = 300
Score = 29.7 bits (67), Expect = 0.22
Identities = 15/58 (25%), Positives = 23/58 (39%)
Query: 48 KYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMMATYEAVVYVLTAYYQNRD 105
+Y V+ E+G L+RG + +IR P A A + + Y Q D
Sbjct: 51 RYSGIVNCFRRVSKEQGVLSLWRGNTANVIRYFPTQAFNFAFKDYFKNMFPKYNQKTD 108
>gnl|CDD|176699 cd08351, ChaP_like, ChaP, an enzyme involved in the biosynthesis of
the antitumor agent chartreusin (cha); and similar
proteins. ChaP is an enzyme involved in the
biosynthesis of the potent antitumor agent chartreusin
(cha). Cha is an aromatic polyketide glycoside produced
by Streptomyces chartreusis. ChaP may play a role as a
meta-cleavage dioxygenase in the oxidative rearrangement
of the anthracyclic polyketide. ChaP belongs to a
conserved domain superfamily that is found in a variety
of structurally related metalloproteins, including the
bleomycin resistance protein, glyoxalase I, and type I
ring-cleaving dioxygenases.
Length = 123
Score = 28.4 bits (64), Expect = 0.44
Identities = 9/31 (29%), Positives = 14/31 (45%), Gaps = 2/31 (6%)
Query: 41 RLREEGTKYKS--FFQTLATVAHEEGARGLY 69
R+RE G Y + + +G RG+Y
Sbjct: 77 RIRERGIDYWADPQRTEPGQINTNDGGRGVY 107
>gnl|CDD|236179 PRK08188, PRK08188, ribonucleotide-diphosphate reductase subunit
alpha; Validated.
Length = 714
Score = 28.1 bits (63), Expect = 0.99
Identities = 19/48 (39%), Positives = 24/48 (50%), Gaps = 4/48 (8%)
Query: 17 GKPKLDFSVLMFSLYPSFAEVARTRLREEGTKYKSFFQTLATVAHEEG 64
GKP D SV Y VA R+R++ + FFQTLA + E G
Sbjct: 319 GKPFADISVT--EKYDEM--VADERIRKKKINAREFFQTLAEIQFESG 362
>gnl|CDD|215532 PLN02982, PLN02982, galactinol-raffinose
galactosyltransferase/ghydrolase, hydrolyzing O-glycosyl
compounds.
Length = 865
Score = 27.9 bits (62), Expect = 1.2
Identities = 13/39 (33%), Positives = 16/39 (41%), Gaps = 5/39 (12%)
Query: 53 FQTLATVAHEEG-----ARGLYRGLSTQLIRQIPNTAIM 86
TL V E G A+ Y GLS L + T I+
Sbjct: 491 IHTLEYVCEEYGGRVELAKAYYDGLSESLAKNFNGTGII 529
>gnl|CDD|183178 PRK11525, dinD, DNA-damage-inducible protein D; Provisional.
Length = 279
Score = 27.7 bits (62), Expect = 1.2
Identities = 15/57 (26%), Positives = 20/57 (35%), Gaps = 21/57 (36%)
Query: 37 VARTRLREEGTKYKSFFQTLATVAHEEGA--------------RGLYRGLSTQLIRQ 79
R L+E + L+ A E G +GLY GL T+ I Q
Sbjct: 135 FLRNELKEH-------NKQLSEAAQEAGVATAIDFAIFQNHGYQGLYGGLDTKAIHQ 184
>gnl|CDD|238815 cd01637, IMPase_like, Inositol-monophosphatase-like domains. This
family of phosphatases is dependent on bivalent metal
ions such as Mg++, and many members are inhibited by Li+
(which is thought to displace a bivalent ion in the
active site). Substrates include
fructose-1,6-bisphosphate, inositol poly- and
monophosphates, PAP and PAPS,
sedoheptulose-1,7-bisphosphate and probably others.
Length = 238
Score = 26.9 bits (60), Expect = 2.5
Identities = 12/38 (31%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Query: 73 STQLIRQIPNTAIMMATYEAVVYVLTAYYQ-NRDNTFY 109
+T + +PN A+ +A YE VL Y D +Y
Sbjct: 85 TTNFVAGLPNFAVSIALYEDGKPVLGVIYDPMLDELYY 122
>gnl|CDD|223021 PHA03247, PHA03247, large tegument protein UL36; Provisional.
Length = 3151
Score = 26.8 bits (59), Expect = 3.1
Identities = 13/36 (36%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
Query: 7 VWG--GNLQENLGKPKLDFSVLMFSLYPSFAEVART 40
+WG G +E L P D + + L+P+F EV R
Sbjct: 1071 LWGLLGQYREALEHPTPDTATALSGLHPNFVEVLRD 1106
>gnl|CDD|177642 PHA03414, PHA03414, virion protein; Provisional.
Length = 1337
Score = 26.6 bits (58), Expect = 3.7
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 5/46 (10%)
Query: 53 FQTLATVAHEEGARGLYR-----GLSTQLIRQIPNTAIMMATYEAV 93
F++ AH + RG Y G+++ L Q P TA+MM A+
Sbjct: 1190 FRSFVAFAHNKLLRGTYENSGVLGVASLLAFQYPLTALMMGAKAAI 1235
>gnl|CDD|218734 pfam05758, Ycf1, Ycf1. The chloroplast genomes of most higher
plants contain two giant open reading frames designated
ycf1 and ycf2. Although the function of Ycf1 is
unknown, it is known to be an essential gene.
Length = 832
Score = 26.5 bits (59), Expect = 4.1
Identities = 13/37 (35%), Positives = 19/37 (51%), Gaps = 10/37 (27%)
Query: 24 SVLMFSLY----------PSFAEVARTRLREEGTKYK 50
SV++ LY PS+ + R R+ EEGT+ K
Sbjct: 1 SVVVVGLYYGFLTTFSIGPSYLFLLRARVLEEGTEKK 37
>gnl|CDD|223644 COG0571, Rnc, dsRNA-specific ribonuclease [Transcription].
Length = 235
Score = 25.3 bits (56), Expect = 7.2
Identities = 11/32 (34%), Positives = 15/32 (46%), Gaps = 2/32 (6%)
Query: 14 ENLGKPKLDFSVL--MFSLYPSFAEVARTRLR 43
E LG L V +F YP+ E ++LR
Sbjct: 48 EFLGDAVLGLVVAEYLFKKYPNLPEGELSKLR 79
>gnl|CDD|215599 PLN03140, PLN03140, ABC transporter G family member; Provisional.
Length = 1470
Score = 25.6 bits (56), Expect = 7.8
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 3/46 (6%)
Query: 58 TVAHEEGARGLYRGLS---TQLIRQIPNTAIMMATYEAVVYVLTAY 100
TV + E A G+Y L Q++ +IP I Y +VY + A+
Sbjct: 1275 TVFYRERAAGMYSALPYAIAQVVCEIPYVLIQTTYYTLIVYAMVAF 1320
>gnl|CDD|226196 COG3670, COG3670, Lignostilbene-alpha,beta-dioxygenase and related
enzymes [Secondary metabolites biosynthesis, transport,
and catabolism].
Length = 490
Score = 25.4 bits (56), Expect = 8.2
Identities = 10/50 (20%), Positives = 19/50 (38%), Gaps = 12/50 (24%)
Query: 51 SFFQTLATVAHEEGARGLYRGLSTQ------------LIRQIPNTAIMMA 88
F +T +A E + L+ GL ++ NT+++M
Sbjct: 94 RFVRTQGYLAENEAGKPLWGGLGETQPPGVRPHSRTGDLKNAANTSVIMH 143
>gnl|CDD|226081 COG3551, COG3551, Uncharacterized protein conserved in bacteria
[Function unknown].
Length = 402
Score = 25.3 bits (55), Expect = 8.8
Identities = 16/74 (21%), Positives = 27/74 (36%), Gaps = 12/74 (16%)
Query: 8 WGGNLQE-NLGKPKLDFSVLMFSLYPSFAEVARTRLREEGTKYKSFFQTLATVAHE-EGA 65
W G +E + P L++ + S + TR E+ +A +A
Sbjct: 265 WKGLEREFSRAMPLLEYVGELLWQSASSHNESMTRFSEQ----------VADLAMSYTAQ 314
Query: 66 RGLYRGLSTQLIRQ 79
R L GL +L+
Sbjct: 315 RQLNDGLRDRLLEA 328
>gnl|CDD|177643 PHA03415, PHA03415, putative internal virion protein; Provisional.
Length = 1019
Score = 25.4 bits (55), Expect = 8.9
Identities = 15/45 (33%), Positives = 24/45 (53%), Gaps = 5/45 (11%)
Query: 53 FQTLATVAHEEGARGL-----YRGLSTQLIRQIPNTAIMMATYEA 92
F++ + AH + RG +GL++ L Q P T +M+A EA
Sbjct: 861 FRSFVSFAHNKLLRGTINADGPKGLASLLAFQYPLTFLMVAANEA 905
>gnl|CDD|235387 PRK05283, PRK05283, deoxyribose-phosphate aldolase; Provisional.
Length = 257
Score = 24.9 bits (55), Expect = 9.1
Identities = 10/18 (55%), Positives = 13/18 (72%)
Query: 30 LYPSFAEVARTRLREEGT 47
+YP F +AR LRE+GT
Sbjct: 47 IYPRFIPIARKTLREQGT 64
>gnl|CDD|233200 TIGR00940, 2a6301s01, Tmonovalent cation:proton antiporter. This
family of proteins constists of bacterial multicomponent
K+:H+ and Na+:H+ antiporters. The best characterized
systems are the PhaABCDEFG system of Rhizobium meliloti
which functions in pH adaptation and as a K+ efflux
system and the MnhABCDEFG system of Staphylococcus
aureus which functions as a Na+:H+ antiporter [Transport
and binding proteins, Cations and iron carrying
compounds].
Length = 793
Score = 25.2 bits (55), Expect = 9.2
Identities = 14/55 (25%), Positives = 19/55 (34%)
Query: 16 LGKPKLDFSVLMFSLYPSFAEVARTRLREEGTKYKSFFQTLATVAHEEGARGLYR 70
LG P + +Y A A L T S F + HE G R + +
Sbjct: 315 LGSPSYHYQGDDSKIYALAAVAAVFHLINHATFKGSLFMAAGIIDHETGTRDIRK 369
>gnl|CDD|235714 PRK06142, PRK06142, enoyl-CoA hydratase; Provisional.
Length = 272
Score = 24.9 bits (55), Expect = 9.2
Identities = 10/36 (27%), Positives = 17/36 (47%)
Query: 6 GVWGGNLQENLGKPKLDFSVLMFSLYPSFAEVARTR 41
GV+G ++ L +P+ D + L + VA R
Sbjct: 74 GVFGQLGKDGLARPRTDLRREILRLQAAINAVADCR 109
Database: CDD.v3.10
Posted date: Mar 20, 2013 7:55 AM
Number of letters in database: 10,937,602
Number of sequences in database: 44,354
Lambda K H
0.320 0.134 0.390
Gapped
Lambda K H
0.267 0.0755 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 44354
Number of Hits to DB: 5,537,581
Number of extensions: 458209
Number of successful extensions: 386
Number of sequences better than 10.0: 1
Number of HSP's gapped: 386
Number of HSP's successfully gapped: 28
Length of query: 112
Length of database: 10,937,602
Length adjustment: 76
Effective length of query: 36
Effective length of database: 7,566,698
Effective search space: 272401128
Effective search space used: 272401128
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 53 (24.1 bits)