RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14477
         (112 letters)



>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
           translocator, mitochondrial carrier transport protein,
           structural genomics; NMR {Mus musculus}
          Length = 303

 Score = 60.0 bits (146), Expect = 4e-12
 Identities = 20/79 (25%), Positives = 33/79 (41%), Gaps = 5/79 (6%)

Query: 35  AEVARTRL-----REEGTKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMMAT 89
            +V + R         G +Y+S  +   T+A EEG RGL++G S  + R        + T
Sbjct: 125 TDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVT 184

Query: 90  YEAVVYVLTAYYQNRDNTF 108
           Y+ +   L       D+  
Sbjct: 185 YDLIKDTLLKANLMTDDLP 203



 Score = 59.6 bits (145), Expect = 5e-12
 Identities = 22/74 (29%), Positives = 33/74 (44%), Gaps = 1/74 (1%)

Query: 37  VARTRL-REEGTKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMMATYEAVVY 95
           V +TR       +Y S      T+  +EG R  Y+G     +R      +M  TYE +  
Sbjct: 225 VVKTRYMNSALGQYHSAGHCALTMLRKEGPRAFYKGFMPSFLRLGSWNVVMFVTYEQLKR 284

Query: 96  VLTAYYQNRDNTFY 109
            L A YQ+R+  F+
Sbjct: 285 ALMAAYQSREAPFH 298



 Score = 57.7 bits (140), Expect = 2e-11
 Identities = 16/58 (27%), Positives = 26/58 (44%)

Query: 36 EVARTRLREEGTKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMMATYEAV 93
          E           +Y+    T+ T+   EG R LY GL   L RQ+   ++ +  Y++V
Sbjct: 34 ESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIGLYDSV 91


>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
           transporter, nucleotide translocation, membrane protein,
           transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
           f.42.1.1 PDB: 2c3e_A*
          Length = 297

 Score = 55.3 bits (134), Expect = 1e-10
 Identities = 12/69 (17%), Positives = 28/69 (40%), Gaps = 9/69 (13%)

Query: 31  YPSFAEVARTRL------REEGTKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTA 84
           YP   +  R R+      +     Y         +A +EG +  ++G  + ++R +   A
Sbjct: 228 YP--FDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG-A 284

Query: 85  IMMATYEAV 93
            ++  Y+ +
Sbjct: 285 FVLVLYDEI 293



 Score = 51.1 bits (123), Expect = 4e-09
 Identities = 14/62 (22%), Positives = 24/62 (38%), Gaps = 6/62 (9%)

Query: 36  EVARTRL------REEGTKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMMAT 89
           + ARTRL           ++      +  +   +G RGLY+G +  +   I   A     
Sbjct: 134 DFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGV 193

Query: 90  YE 91
           Y+
Sbjct: 194 YD 195



 Score = 51.1 bits (123), Expect = 5e-09
 Identities = 11/61 (18%), Positives = 20/61 (32%)

Query: 46  GTKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMMATYEAVVYVLTAYYQNRD 105
             +YK     +  +  E+G    +RG    +IR  P  A+  A  +    +         
Sbjct: 47  EKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKDKYKQIFLGGVDRHK 106

Query: 106 N 106
            
Sbjct: 107 Q 107


>2ex4_A Adrenal gland protein AD-003; methyltransferase, structural
           genomics, SGC, structural genomics consortium; HET: SAH;
           1.75A {Homo sapiens} SCOP: c.66.1.42
          Length = 241

 Score = 29.3 bits (65), Expect = 0.21
 Identities = 15/50 (30%), Positives = 23/50 (46%), Gaps = 1/50 (2%)

Query: 5   CGVWGGNLQENLGKPKLDFSVLMFSLYPSFAEVARTRLREEGTKYKSFFQ 54
           CG   G + + L  P     V M  +   F   A+T L EEG + +++F 
Sbjct: 86  CGAGIGRITKRLLLPLFR-EVDMVDITEDFLVQAKTYLGEEGKRVRNYFC 134


>1dm0_A Shiga toxin A subunit; AB5 structure, polypeptide A, blocking,
           active site; 2.50A {Shigella dysenteriae} SCOP:
           d.165.1.2 PDB: 1r4q_A
          Length = 287

 Score = 27.5 bits (60), Expect = 1.0
 Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 1/79 (1%)

Query: 31  YPSFAEVARTRLREEGTKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMMATY 90
           Y     V R+ +        S   +L  +    G       +      +     + +   
Sbjct: 13  YVDSLNVIRSAIGTPLQTISSGGTSLLMIDSGTGDNLFAVDVRGIDPEEGRFNNLRLIVE 72

Query: 91  EAVVYVLTAYYQNRDNTFY 109
              +YV   +    +N FY
Sbjct: 73  RNNLYVT-GFVNRTNNVFY 90


>1k8b_A EIF-2-beta, probable translation initiation factor 2 beta
          subunit; N-terminal domain, AIF2 subunit beta; NMR
          {Methanocaldococcus jannaschii} SCOP: d.241.1.1
          Length = 52

 Score = 24.3 bits (53), Expect = 3.2
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 34 FAEVARTRLREEGTKYKSFFQTLATVAHEEGARGLYRG 71
          F E+A+   R+E    K   +   +  + EG R + + 
Sbjct: 14 FRELAKAVNRDEEFFAKYLLKETGSAGNLEGGRLILQR 51


>3k8x_A Acetyl-COA carboxylase; transferase, carboxyltransferase, AC
           tepraloxydim, ATP-binding, biotin, fatty acid
           biosynthesis; HET: B89; 2.30A {Saccharomyces cerevisiae}
           PDB: 1w2x_A* 3h0s_A* 3h0j_A* 3h0q_A* 1od2_A* 1od4_A*
           3pgq_A* 3tvu_A* 3tv5_A* 3tvw_A* 3tz3_A* 1uyr_A* 1uys_A*
           1uyt_A 1uyv_A
          Length = 758

 Score = 25.2 bits (55), Expect = 7.1
 Identities = 7/42 (16%), Positives = 13/42 (30%), Gaps = 1/42 (2%)

Query: 58  TVAHEEGARG-LYRGLSTQLIRQIPNTAIMMATYEAVVYVLT 98
           T+          Y     Q   Q+    I++    A+  +L 
Sbjct: 251 TLVTCRSVGIGAYLVRLGQRAIQVEGQPIILTGAPAINKMLG 292


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.320    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0605    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,645,492
Number of extensions: 82345
Number of successful extensions: 151
Number of sequences better than 10.0: 1
Number of HSP's gapped: 150
Number of HSP's successfully gapped: 23
Length of query: 112
Length of database: 6,701,793
Length adjustment: 76
Effective length of query: 36
Effective length of database: 4,579,797
Effective search space: 164872692
Effective search space used: 164872692
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 51 (23.7 bits)