RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14477
         (112 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 57.8 bits (138), Expect = 8e-12
 Identities = 8/48 (16%), Positives = 21/48 (43%), Gaps = 1/48 (2%)

Query: 46  GTKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMMATYEAV 93
              Y         +A +EG +  ++G  + ++R +   A ++  Y+ +
Sbjct: 246 DIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG-AFVLVLYDEI 292


>d1gvha1 a.1.1.2 (A:1-146) Flavohemoglobin, N-terminal domain
           {Escherichia coli [TaxId: 562]}
          Length = 146

 Score = 26.5 bits (58), Expect = 0.66
 Identities = 17/92 (18%), Positives = 29/92 (31%)

Query: 12  LQENLGKPKLDFSVLMFSLYPSFAEVARTRLREEGTKYKSFFQTLATVAHEEGARGLYRG 71
           L E   K    F   MF+  P   E+     +  G + ++ F  +A  A           
Sbjct: 17  LVETGPKLTAHFYDRMFTHNPELKEIFNMSNQRNGDQREALFNAIAAYASNIENLPALLP 76

Query: 72  LSTQLIRQIPNTAIMMATYEAVVYVLTAYYQN 103
              ++ ++  +  I    Y  V   L A    
Sbjct: 77  AVEKIAQKHTSFQIKPEQYNIVGEHLLATLDE 108


>d1r4qa_ d.165.1.2 (A:) Shiga toxin, A-chain {Shigella dysenteriae,
           toxin I [TaxId: 622]}
          Length = 289

 Score = 24.5 bits (53), Expect = 3.0
 Identities = 11/79 (13%), Positives = 22/79 (27%), Gaps = 1/79 (1%)

Query: 31  YPSFAEVARTRLREEGTKYKSFFQTLATVAHEEGARGLYRGLSTQLIRQIPNTAIMMATY 90
           Y     V R+ +        S   +L  +    G       +      +     + +   
Sbjct: 13  YVDSLNVIRSAIGTPLQTISSGGTSLLMIDSGTGDNLFAVDVRGIDPEEGRFNNLRLIVE 72

Query: 91  EAVVYVLTAYYQNRDNTFY 109
              +YV   +    +N FY
Sbjct: 73  RNNLYVT-GFVNRTNNVFY 90


>d1k8ba_ d.241.1.1 (A:) Translation initiation factor 2 beta,
          aIF2beta, N-terminal domain {Archaeon Methanococcus
          jannaschii [TaxId: 2190]}
          Length = 52

 Score = 22.6 bits (49), Expect = 4.6
 Identities = 9/38 (23%), Positives = 17/38 (44%)

Query: 34 FAEVARTRLREEGTKYKSFFQTLATVAHEEGARGLYRG 71
          F E+A+   R+E    K   +   +  + EG R + + 
Sbjct: 14 FRELAKAVNRDEEFFAKYLLKETGSAGNLEGGRLILQR 51


>d2cwla1 a.25.1.3 (A:1-299) Manganese catalase (T-catalase) {Thermus
           thermophilus [TaxId: 274]}
          Length = 299

 Score = 23.3 bits (50), Expect = 7.8
 Identities = 18/106 (16%), Positives = 32/106 (30%), Gaps = 18/106 (16%)

Query: 12  LQENLGKPKLDFSVLMFSLYPSFAEVARTRLREEGTKYKSFFQTLATV--AHEE----GA 65
           +Q  LG    + S LM  +Y SF      R ++    Y      +AT    H E      
Sbjct: 26  VQALLGGRFGEMSTLMNYMYQSFN----FRGKKALKPYYDLIANIATEELGHIELVAATI 81

Query: 66  RGLYRGLSTQLIRQI--PNTAIMMATYEA------VVYVLTAYYQN 103
             L      + + +   P +A +    +       +     +    
Sbjct: 82  NSLLAKNPGKDLEEGVDPESAPLGFAKDVRNAAHFIAGGANSLVMG 127


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.320    0.134    0.390 

Gapped
Lambda     K      H
   0.267   0.0596    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 385,676
Number of extensions: 14251
Number of successful extensions: 21
Number of sequences better than 10.0: 1
Number of HSP's gapped: 20
Number of HSP's successfully gapped: 7
Length of query: 112
Length of database: 2,407,596
Length adjustment: 71
Effective length of query: 41
Effective length of database: 1,432,766
Effective search space: 58743406
Effective search space used: 58743406
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 47 (22.2 bits)