BLASTP 2.2.26 [Sep-21-2011]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.

Query= psy14478
         (206 letters)

Database: pdbaa 
           62,578 sequences; 14,973,337 total letters

Searching..................................................done



>pdb|1J4B|A Chain A, Recombinant Mouse-muscle Adenylosuccinate Synthetase
 pdb|1IWE|A Chain A, Imp Complex Of The Recombinant Mouse-Muscle
           Adenylosuccinate Synthetase
 pdb|1IWE|B Chain B, Imp Complex Of The Recombinant Mouse-Muscle
           Adenylosuccinate Synthetase
 pdb|1LNY|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
           Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
           Imp, Gdp And Mg
 pdb|1LNY|B Chain B, Crystal Structure Of The Recombinant Mouse-Muscle
           Adenylosuccinate Synthetase Complexed With 6-Phosphoryl-
           Imp, Gdp And Mg
 pdb|1LON|A Chain A, Crystal Structure Of The Recombinant Mouse-Muscle
           Adenylosuccinate Synthetase Complexed With
           6-Phosphoryl-Imp, Gdp And Hadacidin
 pdb|1LOO|A Chain A, Crystal Structure Of The Mouse-Muscle Adenylosuccinate
           Synthetase Ligated With Gtp
 pdb|1MEZ|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
           Synthetase Complexed With Samp, Gdp, So4(2-), And Mg(2+)
 pdb|1MF0|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
           Synthetase Complexed With Amp, Gdp, Hpo4(2-), And Mg(2+)
 pdb|1MF1|A Chain A, Structure Of The Recombinant Mouse-Muscle Adenylosuccinate
           Synthetase Complexed With Amp
 pdb|2DGN|A Chain A, Mouse Muscle Adenylosuccinate Synthetase Partially Ligated
           Complex With Gtp, 2'-Deoxy-Imp
          Length = 457

 Score = 31.2 bits (69), Expect = 0.39,   Method: Compositional matrix adjust.
 Identities = 25/90 (27%), Positives = 40/90 (44%), Gaps = 9/90 (10%)

Query: 119 EQSEKEWMKQWAKIVVALERAVSQEDCHRY---LQEYSIKLGPGDEPGTEQRGVLVIKSK 175
           E++EK+ +K W K ++  +RA    D H+    LQE   +   G   GT ++G+    S 
Sbjct: 114 EKNEKKGLKDWEKRLIISDRAHLVFDFHQAVDGLQEVQRQAQEGKNIGTTKKGIGPTYSS 173

Query: 176 TAPE------EPAPKFEAFSAALDVMAFTH 199
            A        +    F+ FSA    +A  H
Sbjct: 174 KAARTGLRICDLLSDFDEFSARFKNLAHQH 203


>pdb|2X0O|A Chain A, Apo Structure Of The Alcaligin Biosynthesis Protein C
           (Alcc) From Bordetella Bronchiseptica
 pdb|2X0P|A Chain A, Co-Complex Structure Of Alcaligin Biosynthetase Protein C
           (Alcc) With Adenosine From Bordetella Bronchiseptica
 pdb|2X0Q|A Chain A, Co-Complex Structure Of Alcaligin  Biosynthesis Protein C
           (Alcc) With Atp From Bordetella Bronchiseptica
          Length = 618

 Score = 28.1 bits (61), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 15/38 (39%), Positives = 20/38 (52%), Gaps = 1/38 (2%)

Query: 129 WAKIVVALERAVSQEDCHRYLQEYSIKLGPGDEPGTEQ 166
           W K+   L R    E  H +L E   +LGPG+ PG E+
Sbjct: 21  WNKVNRLLVRKAISEYAHEWLLEPQ-RLGPGETPGFER 57


>pdb|2DT7|B Chain B, Solution Structure Of The Second Surp Domain Of Human
           Splicing Factor Sf3a120 In Complex With A Fragment Of
           Human Splicing Factor Sf3a60
          Length = 85

 Score = 27.3 bits (59), Expect = 5.4,   Method: Compositional matrix adjust.
 Identities = 12/34 (35%), Positives = 18/34 (52%)

Query: 168 GVLVIKSKTAPEEPAPKFEAFSAALDVMAFTHDI 201
           G  VI+    P+EP P+FE  +    + AF  D+
Sbjct: 1   GAQVIQETIVPKEPPPEFEFIADPPSISAFDLDV 34


>pdb|2XB3|A Chain A, The Structure Of Cyanobacterial Psbp
          Length = 165

 Score = 26.9 bits (58), Expect = 8.1,   Method: Compositional matrix adjust.
 Identities = 24/64 (37%), Positives = 31/64 (48%), Gaps = 13/64 (20%)

Query: 135 ALERAVSQ--EDCHRYLQEYSIKLGPGDEPGTEQR----------GVLVIKSKTAPEEPA 182
           AL  A SQ  +D   Y+ EY++ L PGD    +QR          G +   S +APEE  
Sbjct: 90  ALIAATSQKADDKTYYILEYAVTL-PGDGNTAQQRHNLSSIAVSRGKVYTLSVSAPEERW 148

Query: 183 PKFE 186
           PK E
Sbjct: 149 PKVE 152


  Database: pdbaa
    Posted date:  Mar 3, 2013 10:34 PM
  Number of letters in database: 14,973,337
  Number of sequences in database:  62,578
  
Lambda     K      H
   0.323    0.137    0.416 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,327,559
Number of Sequences: 62578
Number of extensions: 251398
Number of successful extensions: 463
Number of sequences better than 100.0: 4
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 4
length of query: 206
length of database: 14,973,337
effective HSP length: 94
effective length of query: 112
effective length of database: 9,091,005
effective search space: 1018192560
effective search space used: 1018192560
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 49 (23.5 bits)