Query psy14478
Match_columns 206
No_of_seqs 173 out of 777
Neff 6.9
Searched_HMMs 46136
Date Fri Aug 16 20:51:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14478.a3m -d /work/01045/syshi/HHdatabase/Cdd.hhm -o /work/01045/syshi/hhsearch_cdd/14478hhsearch_cdd -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 KOG3676|consensus 100.0 1.9E-38 4.2E-43 298.8 11.4 180 1-184 497-713 (782)
2 TIGR00870 trp transient-recept 100.0 1.1E-28 2.5E-33 237.9 11.9 139 4-142 465-646 (743)
3 KOG3609|consensus 99.9 1.1E-21 2.4E-26 186.5 9.2 139 6-144 464-644 (822)
4 KOG3614|consensus 99.8 3.5E-19 7.7E-24 175.4 7.5 195 5-199 889-1157(1381)
5 KOG0510|consensus 99.8 3.9E-18 8.5E-23 161.8 13.5 147 6-152 622-795 (929)
6 PLN03223 Polycystin cation cha 99.6 2.1E-15 4.5E-20 149.3 9.3 113 9-121 1293-1429(1634)
7 PF08016 PKD_channel: Polycyst 99.5 2.5E-14 5.4E-19 130.5 7.8 112 5-117 294-425 (425)
8 KOG3599|consensus 99.4 4.2E-12 9.2E-17 123.5 11.7 127 5-133 551-697 (798)
9 PF00520 Ion_trans: Ion transp 98.5 2.6E-07 5.7E-12 73.4 7.3 102 9-110 60-200 (200)
10 KOG2301|consensus 97.5 0.00038 8.3E-09 72.7 8.3 110 48-157 1316-1451(1592)
11 KOG3733|consensus 96.3 0.0057 1.2E-07 56.1 5.0 131 9-154 377-532 (566)
12 KOG2302|consensus 95.6 0.023 4.9E-07 57.1 5.7 70 52-121 1612-1691(1956)
13 KOG2301|consensus 95.6 0.029 6.3E-07 59.1 6.7 64 54-118 600-666 (1592)
14 KOG2302|consensus 95.2 0.1 2.2E-06 52.7 8.6 101 54-154 1316-1429(1956)
15 PF04362 Iron_traffic: Bacteri 79.5 3.2 7E-05 30.1 3.8 44 111-154 28-71 (88)
16 PRK05408 oxidative damage prot 77.6 3.7 8E-05 30.0 3.7 41 111-151 28-68 (90)
17 PF11616 EZH2_WD-Binding: WD r 50.8 24 0.00051 20.4 2.7 24 108-131 2-28 (30)
18 PF09125 COX2-transmemb: Cytoc 50.3 39 0.00084 20.5 3.7 19 87-105 15-33 (38)
19 KOG0498|consensus 49.4 2.1E+02 0.0045 28.7 10.7 70 85-155 318-388 (727)
20 PLN03192 Voltage-dependent pot 44.7 2.5E+02 0.0053 28.1 10.7 30 87-117 277-306 (823)
21 COG2924 Uncharacterized protei 36.6 40 0.00087 24.3 2.7 40 111-152 28-69 (90)
22 PRK13726 conjugal transfer pil 31.6 89 0.0019 25.7 4.5 66 82-147 9-91 (188)
23 PF12065 DUF3545: Protein of u 28.4 65 0.0014 21.7 2.5 32 174-205 16-50 (59)
24 PF10954 DUF2755: Protein of u 24.2 1.4E+02 0.003 21.9 3.8 26 82-107 20-45 (100)
25 KOG3188|consensus 22.5 4.9E+02 0.011 22.2 7.9 33 122-155 48-81 (246)
26 COG4272 Predicted membrane pro 22.4 44 0.00096 25.4 1.0 18 94-111 104-121 (125)
No 1
>KOG3676|consensus
Probab=100.00 E-value=1.9e-38 Score=298.80 Aligned_cols=180 Identities=38% Similarity=0.626 Sum_probs=159.9
Q ss_pred CCchhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhh----------heee----eeecCCcc---------------
Q psy14478 1 MGDKKTEEAILIFAVPGSWFLLMFFAGAIRLTGPFVTMA----------FYFL----YKGFPGVK--------------- 51 (206)
Q Consensus 1 ~g~~~~e~~l~a~a~~l~w~~ll~f~r~~~~~Gp~v~Mi----------F~~l----~~gf~~~~--------------- 51 (206)
+|....+.+++++|.+++|..+|||+|++|.+|||++|| |.++ .+||++++
T Consensus 497 i~~~~~~~~~lvfAl~lgW~~~Lyf~Rgfq~~Gpf~~MIykmI~~DL~RF~~IY~Vfl~GFsqAfy~if~~~~~~~~~~~ 576 (782)
T KOG3676|consen 497 LGAIKWELALLVFALVLGWKNLLYFTRGFQLTGPFVIMIYKMIFGDLFRFLLIYLVFLVGFSQAFYSIFQTCDRDSSPND 576 (782)
T ss_pred HHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCccccccc
Confidence 366788999999999999999999999999999999999 4433 36887543
Q ss_pred --------ccCCCcHHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHH
Q psy14478 52 --------TSLYSSYLSTWMALFQITLGDYNYPELSYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQSEK 123 (206)
Q Consensus 52 --------~~~f~s~~~s~~~lf~~~lGe~~~~~~~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~a~~ 123 (206)
+..|.++...++++|..++|..|++..++..+|++++++|++|+++++|+|+|||||||++||++|.++++.
T Consensus 577 ~~~~~~~m~~~~ds~~~~~l~lf~ftig~~dl~~~~~~~~~~~~kilfv~y~ilv~ILllNMLIAMMg~Ty~~Va~~s~~ 656 (782)
T KOG3676|consen 577 KNVESNPMCNPYDSFSTFLLTLFEFTIGMGDLEACENTDYPVLFKILFVAYMILVTILLLNMLIAMMGNTYETVAQESEK 656 (782)
T ss_pred ccccccccCChhhHHHHHHHHHHHHhhhhhhhhhcccccchHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhHHH
Confidence 124556778889999999999999988888999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccCCCCCCCcccccceeeeeccCCCCCCcc
Q psy14478 124 EWMKQWAKIVVALERAVSQEDCHRYLQEYSIKLGPGDEPGTEQRGVLVIKSKTAPEEPAPK 184 (206)
Q Consensus 124 ew~~qrA~~il~~E~~lp~~~~~~~~~~y~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~ 184 (206)
||++|||++|+++||++||+.|++|+..|++++++++| .|..+++++.++++..|++
T Consensus 657 ~Wk~Q~A~~iL~lErs~p~~~r~~~~~~y~~~~g~~~d----~R~~~~v~~~~~~~~~~~~ 713 (782)
T KOG3676|consen 657 EWKLQWAATILMLERSLPPALRKRFRLGYSRPVGTSGD----VRWLLRVEEVNWTEWNQNL 713 (782)
T ss_pred HHHHHHHHHHHHHHhcCCHHHHHHHhhccceecCCCCc----eeEEEEEcccchhhHHHHH
Confidence 99999999999999999999999999999999998854 6888888888887766543
No 2
>TIGR00870 trp transient-receptor-potential calcium channel protein. after chronic exposure to capsaicin. (McCleskey and Gold, 1999).
Probab=99.95 E-value=1.1e-28 Score=237.87 Aligned_cols=139 Identities=32% Similarity=0.492 Sum_probs=120.8
Q ss_pred hhhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhh----------hee----eeeecCCcc------------------
Q psy14478 4 KKTEEAILIFAVPGSWFLLMFFAGAIRLTGPFVTMA----------FYF----LYKGFPGVK------------------ 51 (206)
Q Consensus 4 ~~~e~~l~a~a~~l~w~~ll~f~r~~~~~Gp~v~Mi----------F~~----l~~gf~~~~------------------ 51 (206)
...+++++|++++++|+|+++|+++++.+||+++|+ |++ +++||+.+.
T Consensus 465 ~~~~~~l~a~~~~l~~~rll~~~~~~~~lGp~~i~l~~mi~~dl~~F~~i~~v~l~aF~~~~~~l~~~~~~~~~~~~~~~ 544 (743)
T TIGR00870 465 TLIEEALFAFALVLSWLNLLYIFRGNQHLGPLQIMIGRMILGDILRFLFIYAVVLFGFACGLNQLYQYYDELKLNECSNP 544 (743)
T ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhchhcCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccccccccc
Confidence 346789999999999999999999999999999988 332 234554211
Q ss_pred --------ccCCCcHHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHH
Q psy14478 52 --------TSLYSSYLSTWMALFQITLGDYNYPELSYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQSEK 123 (206)
Q Consensus 52 --------~~~f~s~~~s~~~lf~~~lGe~~~~~~~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~a~~ 123 (206)
...|+++..++.++|++++|+.|+....+..++++|+++|++|+++++|||+|||||||++||++|+++++.
T Consensus 545 ~~~~~~~~~~~f~~~~~s~~~lf~~~~G~~~~~~~~~~~~~~~~~il~~~y~~i~~ilLlNlLIAmm~~t~~~v~~~~~~ 624 (743)
T TIGR00870 545 HARSCEKQGNAYSTLFETSQELFWAIIGLGDLLANEHKFTEFVGLLLFGAYNVIMYILLLNMLIAMMGNTYQLIADDADE 624 (743)
T ss_pred cccccccccccccCHHHHHHHHHHHHcCCcccccccccchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHhhhHH
Confidence 156889999999999999999988665555678999999999999999999999999999999999999999
Q ss_pred HHHHHHHHHHHHHHHh---CCH
Q psy14478 124 EWMKQWAKIVVALERA---VSQ 142 (206)
Q Consensus 124 ew~~qrA~~il~~E~~---lp~ 142 (206)
||++|||++++++|+. +||
T Consensus 625 ~wk~~r~~~~~~y~~~~~~~p~ 646 (743)
T TIGR00870 625 EWKFQRAKLWMSYEREGGTCPP 646 (743)
T ss_pred HHHHHHHHHHHHHHhcCCCCCC
Confidence 9999999999999985 555
No 3
>KOG3609|consensus
Probab=99.85 E-value=1.1e-21 Score=186.49 Aligned_cols=139 Identities=24% Similarity=0.348 Sum_probs=114.5
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhh---------heeee----eecCC----------------------c
Q psy14478 6 TEEAILIFAVPGSWFLLMFFAGAIRLTGPFVTMA---------FYFLY----KGFPG----------------------V 50 (206)
Q Consensus 6 ~e~~l~a~a~~l~w~~ll~f~r~~~~~Gp~v~Mi---------F~~l~----~gf~~----------------------~ 50 (206)
+.++++|+|.+++++|+++++..++.+||+++.+ |+++| .+|+. .
T Consensus 464 l~E~lfAiA~V~S~lrl~~i~t~n~~lGPlqISlGrmv~Di~kF~~I~~lvl~aF~iGl~qLy~yy~~~~~~~~~~~~~~ 543 (822)
T KOG3609|consen 464 LAEGLFAIANVLSFLKLFYIFTMNPSLGPLQISLGRMVGDIYKFLFIFVLVLVAFSIGLNQLYDYYLNRKTMKIDQDYTK 543 (822)
T ss_pred HHHHHHHHHHHHHHHHHHHHhhccccccchhhhHHHHHHHHHHHHHHHHHHHHHHHhccchHhhhhcchhhccccccccc
Confidence 6899999999999999999999999999999854 44332 23321 0
Q ss_pred cccCCCcHHHHHHHHHHHHhcCCCCCCc----cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHH
Q psy14478 51 KTSLYSSYLSTWMALFQITLGDYNYPEL----SYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQSEKEWM 126 (206)
Q Consensus 51 ~~~~f~s~~~s~~~lf~~~lGe~~~~~~----~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~a~~ew~ 126 (206)
.+..|+|...|..++||.++|-.+.... ......++|.++|++|.+++.|+|||||||||+++||.|.++||.|||
T Consensus 544 ~~~~fsti~eS~~tLFWsiFglv~~~~~~l~~~Hkf~e~ig~~lfG~Y~vi~vIVLLNmLIAMmnnSyQeIeD~ADvEWK 623 (822)
T KOG3609|consen 544 TTDSFSTIGESSKTLFWSIFGLVVLGSVVLPYKHKFTEFIGEVLFGVYNVILIIVLLNLLIAMMSNSYQEIEDDADVEWK 623 (822)
T ss_pred cccccccHHHHHHHHHHHHHhcccccceecccchhHHHHHHHHHHHhhheeeHHHHHHHHHHHHHhHHHHHhhcchhHHH
Confidence 1226999999999999999987663322 123457999999999999999999999999999999999999999999
Q ss_pred HHHHHHHHH---HHHhCCHHH
Q psy14478 127 KQWAKIVVA---LERAVSQED 144 (206)
Q Consensus 127 ~qrA~~il~---~E~~lp~~~ 144 (206)
+.||++.++ -++++||+.
T Consensus 624 FARAKLw~syF~eg~tLPpPF 644 (822)
T KOG3609|consen 624 FARAKLWMSYFDEGMALPPPF 644 (822)
T ss_pred HHHHHHHHHHhcCCCCCCCCc
Confidence 999999776 345788774
No 4
>KOG3614|consensus
Probab=99.77 E-value=3.5e-19 Score=175.43 Aligned_cols=195 Identities=16% Similarity=0.281 Sum_probs=144.0
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhh-------heeee------eecCCccc--------cCCCcHHHHHH
Q psy14478 5 KTEEAILIFAVPGSWFLLMFFAGAIRLTGPFVTMA-------FYFLY------KGFPGVKT--------SLYSSYLSTWM 63 (206)
Q Consensus 5 ~~e~~l~a~a~~l~w~~ll~f~r~~~~~Gp~v~Mi-------F~~l~------~gf~~~~~--------~~f~s~~~s~~ 63 (206)
...|+++++-.+++.+|++.|+..++.+||+++|+ |+++| +.|+.+-+ ....-+.+.++
T Consensus 889 ~~GRvIl~~d~i~~t~rLl~~f~V~~~lGPyI~mv~kMm~dmf~flfllaV~LlsfGVarQaIl~P~e~~~w~l~R~i~y 968 (1381)
T KOG3614|consen 889 YSGRVILCFDFILFTLRLLHYFTVSKQLGPYIVMVKKMMKDMFFFLFLLAVVLLSFGVARQAILRPDEPRHWWLFRNIFY 968 (1381)
T ss_pred ecceeeeeehHHHHHHHHhhheeeccccCchhHHHHHHHHHHHHHHHHHHHHHHHhhhhhhhhcCCCCCchHHHHHHHHH
Confidence 35788999999999999999999999999999987 44332 34443221 12334567888
Q ss_pred HHHHHHhcCCCCCCcc-----------------------ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhh
Q psy14478 64 ALFQITLGDYNYPELS-----------------------YTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQ 120 (206)
Q Consensus 64 ~lf~~~lGe~~~~~~~-----------------------~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~ 120 (206)
..|.|++|+.--++++ +....|+.+++.++|+++.+|||+||||||.++||+.|+++
T Consensus 969 ~PYlmifGeV~a~eID~~~~e~~~~~~p~~~~~s~~~~~c~pg~wl~plLl~~yLLv~nILL~NLLIA~Fn~tf~~v~~~ 1048 (1381)
T KOG3614|consen 969 WPYLMLFGEVPADEIDTCTCEKSFCGEPLRYESSPGNPSCPPGSWLTPLLLVIYLLVTNILLVNLLIAMFSYTFGNVQEN 1048 (1381)
T ss_pred HHHHHHhccccHhhhhhhcccccccCCCcccCCCCCCCCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence 8999999986422110 11234899999999999999999999999999999999999
Q ss_pred hHHHHHHHHHHHHHHHHHh--CCHHHH-HHH----HHhcccccCCCCCC-----------------------Ccccccce
Q psy14478 121 SEKEWMKQWAKIVVALERA--VSQEDC-HRY----LQEYSIKLGPGDEP-----------------------GTEQRGVL 170 (206)
Q Consensus 121 a~~ew~~qrA~~il~~E~~--lp~~~~-~~~----~~~y~~~~~~~~~~-----------------------~~~~~~~~ 170 (206)
+++.|++||.++|.|++.. +||+.- .-| ++..+.++++.+++ ..-.+.++
T Consensus 1049 sd~iWkFQRY~limeyh~rP~LPPPfiilsHi~l~~~r~~~~~~~~~~~~~~~~~~klfls~e~~~kl~~fEe~~vE~~~ 1128 (1381)
T KOG3614|consen 1049 SDQIWKFQRYSLIMEYHSRPALPPPFIILSHIYLLLKRLSNSFRGDKRARDKDESLKLFLSKEENKKLHTFEEVCVENFL 1128 (1381)
T ss_pred HHHHHHHHHHHHHHHhhcCCCCCCCcHHHHHHHHHHHHHHcccCcccccchhhhhhHhhCCHHHHhhhhHHHHHHHHHHH
Confidence 9999999999999999984 777752 222 22222233322110 12233556
Q ss_pred eeeeccCCCCCCcchHHhhhhhhhhhhhh
Q psy14478 171 VIKSKTAPEEPAPKFEAFSAALDVMAFTH 199 (206)
Q Consensus 171 v~~~k~~~~~~~~~~~~~~~~~d~~~~~~ 199 (206)
..+.+.++...++|++.+++++|.|..++
T Consensus 1129 r~~~~~~~~s~~Erir~t~~rvd~~~~~l 1157 (1381)
T KOG3614|consen 1129 RKREMEQNSSTEERIRRTANRVDLILNRL 1157 (1381)
T ss_pred HHHHHHhccCchhhHHHHHHHHHHHHHHH
Confidence 66666777778899999999999998765
No 5
>KOG0510|consensus
Probab=99.77 E-value=3.9e-18 Score=161.84 Aligned_cols=147 Identities=20% Similarity=0.354 Sum_probs=127.3
Q ss_pred hHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhh-------------heeeeeecCCcc------ccCCCcHHHHHHHHH
Q psy14478 6 TEEAILIFAVPGSWFLLMFFAGAIRLTGPFVTMA-------------FYFLYKGFPGVK------TSLYSSYLSTWMALF 66 (206)
Q Consensus 6 ~e~~l~a~a~~l~w~~ll~f~r~~~~~Gp~v~Mi-------------F~~l~~gf~~~~------~~~f~s~~~s~~~lf 66 (206)
....+.|+|++++|++++.+++.++.+|.||+|+ |.++.+||+.++ ++.|++.+.+...+|
T Consensus 622 ~Q~~laa~aV~l~W~nllLmi~~~p~~gIfvvM~~~I~ktflk~f~vfs~lliaF~lsFYVll~~~~eFs~p~ms~l~t~ 701 (929)
T KOG0510|consen 622 LQWVLAAFAVLLGWMNLLLMIGRFPVFGIFVVMLEVILKTFLKSFMVFSILLIAFGLSFYVLLNKSSEFSNPFMSKLETF 701 (929)
T ss_pred HHHHHHHHHHHHHHHHHHHHHccCCccceehHHHHHHHHHHHHHHHHHHHHHHHhhhhheeeecCCCCcCCCcchhhhhH
Confidence 4567899999999999999999999999999998 333446777554 457999999999999
Q ss_pred HHHhcCCCCCC-c-------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHH
Q psy14478 67 QITLGDYNYPE-L-------SYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQSEKEWMKQWAKIVVALER 138 (206)
Q Consensus 67 ~~~lGe~~~~~-~-------~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~a~~ew~~qrA~~il~~E~ 138 (206)
.|++||.||.. . .+...|..+.+.|++|+++|+|||+||||++..++.+.|+++|+..-..-+..++.++|+
T Consensus 702 ~MMiGe~dft~~~~~~~~~~~~l~~~v~s~~~f~~F~IfmtIvLMNLLiGLAV~DIq~vqk~A~LkrlamQv~L~s~iE~ 781 (929)
T KOG0510|consen 702 VMMIGENDFTKVMFTEEFKRNSLAHPVLSFAIFVLFTIFMTIVLMNLLIGLAVGDIQGVQKHAELKRLAMQVNLHSRIEQ 781 (929)
T ss_pred HHhhcccccccccccchhhcCcccchHHHHHHHHHHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 99999999872 1 123568999999999999999999999999999999999999999888888889999999
Q ss_pred hCCHHHHHHHHHhc
Q psy14478 139 AVSQEDCHRYLQEY 152 (206)
Q Consensus 139 ~lp~~~~~~~~~~y 152 (206)
.+|-..+.+..+.-
T Consensus 782 ~L~~~~l~~~~k~~ 795 (929)
T KOG0510|consen 782 KLPHHFLQRVDKKS 795 (929)
T ss_pred HccchhHhhhhhcc
Confidence 99999988876643
No 6
>PLN03223 Polycystin cation channel protein; Provisional
Probab=99.60 E-value=2.1e-15 Score=149.29 Aligned_cols=113 Identities=18% Similarity=0.296 Sum_probs=91.7
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhhh-------------heeeeeecC-------CccccCCCcHHHHHHHHHHH
Q psy14478 9 AILIFAVPGSWFLLMFFAGAIRLTGPFVTMA-------------FYFLYKGFP-------GVKTSLYSSYLSTWMALFQI 68 (206)
Q Consensus 9 ~l~a~a~~l~w~~ll~f~r~~~~~Gp~v~Mi-------------F~~l~~gf~-------~~~~~~f~s~~~s~~~lf~~ 68 (206)
.+.++.+++.|+|+++++|.++.++.+...+ |+++|++|+ +.....|+++..|+.++|+|
T Consensus 1293 aL~GIlIFLsiLKfLRLLRFNPrL~vLt~TLrrAapDLa~F~IIF~IVF~AFAqLG~LLFGt~ve~FSTf~sSL~TLFqM 1372 (1634)
T PLN03223 1293 TLSGINIILLLGRILKLMDFQPRLGVITRTLWLAGADLMHFFVIFGMVFVGYAFIGHVIFGNASVHFSDMTDSINSLFEN 1372 (1634)
T ss_pred HHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCchhhcCHHHHHHHHHHH
Confidence 3667889999999999999999999887543 233333432 33456899999999999999
Q ss_pred HhcCCCC--CCccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhh
Q psy14478 69 TLGDYNY--PELSY--TVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQS 121 (206)
Q Consensus 69 ~lGe~~~--~~~~~--~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~a 121 (206)
++|+++| +++.. ...+++|+++|++|++++.++||||+|||+.++|++|+++.
T Consensus 1373 LLGDfdYF~eDLk~l~e~nrVLGPIYFfSFILLV~FILLNMFIAII~DSFsEVK~d~ 1429 (1634)
T PLN03223 1373 LLGDITYFNEDLKNLTGLQFVVGMIYFYSYNIFVFMILFNFLLAIICDAFGEVKANA 1429 (1634)
T ss_pred HHcCchHHHHHHHhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence 9999985 22221 24689999999999999999999999999999999998764
No 7
>PF08016 PKD_channel: Polycystin cation channel; InterPro: IPR013122 Polycystic kidney diseases (PKD) are disorders characterised by large numbers of cysts distributed throughout grossly-enlarged kidneys. Cyst development is associated with impairment of kidney function, and ultimately kidney failure and death []. Most cases of autosomal dominant PKD result from mutations in the PKD1 gene that cause premature protein termination. A second gene for autosomal dominant polycystic kidney disease has been identified by positional cloning []. The predicted 968-amino acid sequence of the PKD2 gene product (polycystin-2) contains 6 transmembrane domains, with intracellular N- and C-termini. Polycystin-2 shares some similarity with the family of voltage-activated calcium (and sodium) channels, and contains a potential calcium-binding domain. Polycystin-2 is strongly expressed in ovary, foetal and adult kidney, testis, and small intestine. Polycystin-1 requires the presence of this protein for stable expression and is believed to interact with it via its C terminus. All mutations between exons 1 and 11 result in a truncated polycystin-2 that lacks a calcium-binding EF-hand domain and the cytoplasmic domains required for the interaction of polycystin-2 with polycystin-1 []. PKD2, although clinically milder than PKD1, has a deleterious impact on life expectancy. This entry contains proteins belonging to the polycystin family including Mucolipin and Polycystin-1 and -2 (PKD1 and PKD2). The domain contains the cation channel region of PKD1 and PKD2 proteins. PKD1 and PKD2 may function through a common signalling pathway that is necessary for normal tubulogenesis. The PKD2 gene product has six transmembrane spans with intracellular amino- and carboxyl-termini []. Mucolipin is a cationic channel which probably plays a role in the endocytic pathway and in the control of membrane trafficking of proteins and lipids. It could play a major role in the calcium ion transport regulating lysosomal exocytosis [, , ].
Probab=99.52 E-value=2.5e-14 Score=130.53 Aligned_cols=112 Identities=29% Similarity=0.528 Sum_probs=97.8
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhh---------h----eeeeeecC-------CccccCCCcHHHHHHH
Q psy14478 5 KTEEAILIFAVPGSWFLLMFFAGAIRLTGPFVTMA---------F----YFLYKGFP-------GVKTSLYSSYLSTWMA 64 (206)
Q Consensus 5 ~~e~~l~a~a~~l~w~~ll~f~r~~~~~Gp~v~Mi---------F----~~l~~gf~-------~~~~~~f~s~~~s~~~ 64 (206)
+..+.+.|+.+++.|+|+++++|.++.++.+..++ | +++++||+ +.....|+|+..++.+
T Consensus 294 ~~~~~l~a~~vfl~~lrll~~l~f~~~~~~~~~tl~~a~~~l~~f~~~~~i~~~~fa~~g~l~fG~~~~~f~s~~~s~~t 373 (425)
T PF08016_consen 294 QLYRYLLAFLVFLLWLRLLKLLRFNRRLSLLSRTLRRAAKDLLGFFVIFLIIFLAFAQAGYLLFGSYSEDFSSFSSSLVT 373 (425)
T ss_pred HHHHHHHHHHHHHHHHHHhhheeecchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCCccccCCHHHHHHH
Confidence 34678899999999999999999999999999876 2 23345554 3456789999999999
Q ss_pred HHHHHhcCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14478 65 LFQITLGDYNYPELSYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHV 117 (206)
Q Consensus 65 lf~~~lGe~~~~~~~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V 117 (206)
++.+++|+++++++.+ .++++|++++.+|++++.++++|++|||+.++|++|
T Consensus 374 l~~~l~g~~~~~~~~~-~~~~lg~l~~~~~~~~~~~illNl~iaIi~~~y~~V 425 (425)
T PF08016_consen 374 LFRMLLGDFDYDELYQ-ANPVLGPLFFFSFMFLVFFILLNLFIAIINDSYEEV 425 (425)
T ss_pred HHHHhcCCCchhhhhc-ccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence 9999999999998764 679999999999999999999999999999999975
No 8
>KOG3599|consensus
Probab=99.36 E-value=4.2e-12 Score=123.48 Aligned_cols=127 Identities=20% Similarity=0.371 Sum_probs=107.5
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHhhhhhhhhHhhh-------------heeeeeecC-------CccccCCCcHHHHHHH
Q psy14478 5 KTEEAILIFAVPGSWFLLMFFAGAIRLTGPFVTMA-------------FYFLYKGFP-------GVKTSLYSSYLSTWMA 64 (206)
Q Consensus 5 ~~e~~l~a~a~~l~w~~ll~f~r~~~~~Gp~v~Mi-------------F~~l~~gf~-------~~~~~~f~s~~~s~~~ 64 (206)
..++.+.|+.+++.|+|+.+++|.++.++.+..++ |.+++++++ +.....|+++..++++
T Consensus 551 ~~~~~l~a~lvfl~tiK~~k~l~f~~t~~~~s~TL~ra~~~I~gf~l~~~I~~~aya~l~~llfG~~v~~f~~f~~s~~t 630 (798)
T KOG3599|consen 551 IAARNLLAFLVFLTTIKLWKVLRFNKTMSQFSSTLSRAWKEIVGFALMFLILFFAYAQLGYLLFGNQVSDFRTFVASIVT 630 (798)
T ss_pred HHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCccCChHHHHHHHHH
Confidence 35788999999999999999999999999999877 333344443 3456789999999999
Q ss_pred HHHHHhcCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHH
Q psy14478 65 LFQITLGDYNYPELSYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQSEKEWMKQWAKIV 133 (206)
Q Consensus 65 lf~~~lGe~~~~~~~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~a~~ew~~qrA~~i 133 (206)
++..++|++++.++.. .++++|+++|.+|++++..|++||+.|+++++|+++++..+++ ..+..+++
T Consensus 631 ~~~~~~G~~~~~~i~~-~~r~LG~~~~~~~v~~v~~illnmF~aiI~~~~~evk~~~~~~-~~~~~~l~ 697 (798)
T KOG3599|consen 631 LLRYILGDFCPAEIFH-ANRILGPLLFLTYVFVVSFILLNLFVAIINDTYGEVKADLAKE-RSSEVELI 697 (798)
T ss_pred HHHHHhccCCcccccc-CCchHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhHHHhhc-cccchhHH
Confidence 9999999998888764 7899999999999999999999999999999999999887775 44444443
No 9
>PF00520 Ion_trans: Ion transport protein calcium channel signature potassium channel signature sodium channel signature; InterPro: IPR005821 This group of proteins is found in sodium, potassium, and calcium ion channels proteins. The proteins have 6 transmembrane helices in which the last two helices flank a loop which determines ion selectivity. In some Na channels proteins the domain is repeated four times, whereas in others (e.g. K channels) the protein forms a tetramer in the membrane. A bacterial structure of the protein is known for the last two helices but is not included in the Pfam family due to it lacking the first four helices. ; GO: 0005216 ion channel activity, 0006811 ion transport, 0055085 transmembrane transport, 0016020 membrane; PDB: 3VMX_B 1QG9_A 1UJL_A 2LE7_A 2LCM_A 3A2A_A 3RW0_A 4EKW_A 3RVY_B 3RVZ_B ....
Probab=98.54 E-value=2.6e-07 Score=73.42 Aligned_cols=102 Identities=23% Similarity=0.267 Sum_probs=78.0
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhhh---------h-----eee--e--e-----ecC--------------Ccc
Q psy14478 9 AILIFAVPGSWFLLMFFAGAIRLTGPFVTMA---------F-----YFL--Y--K-----GFP--------------GVK 51 (206)
Q Consensus 9 ~l~a~a~~l~w~~ll~f~r~~~~~Gp~v~Mi---------F-----~~l--~--~-----gf~--------------~~~ 51 (206)
.+.++..++.|+|++++++.++.+|+++.++ + +++ + . |-. ...
T Consensus 60 ~~~~~~~~l~~~R~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~a~~~~~lf~~~~~~~~~~~~~~~~~~~~ 139 (200)
T PF00520_consen 60 SLLRIFRLLRLLRLLRLLRRFRSLRRLLRALIRSFPDLFKFILLLFIVLLFFACIGYQLFGGSDNSCCDPTWDSENDIYG 139 (200)
T ss_dssp HCHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTTS-------SS----SST
T ss_pred ceEEEEEeeccccccccccccccccccccccccccccccccccccccccccccchhheeccccccccccccccccccccc
Confidence 4678888999999999999999999997654 0 000 0 1 111 111
Q ss_pred ccCCCcHHHHHHHHHHHHhcCCCCCCccc--cccchhHHHHHHHHHHHHHHHHHHHHHHHH
Q psy14478 52 TSLYSSYLSTWMALFQITLGDYNYPELSY--TVYPTMSKIVFTVFMVLVPILLLNMLIAMM 110 (206)
Q Consensus 52 ~~~f~s~~~s~~~lf~~~lGe~~~~~~~~--~~~~~~~~ilf~~f~il~~IlLLNLLIAmm 110 (206)
...|++++.++.++++++.|+...+.... +..++.+.+++++|.++++++++|++||+|
T Consensus 140 ~~~f~~~~~s~~~~~~~~t~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~l~nlliavi 200 (200)
T PF00520_consen 140 YENFDSFGESLYWLFQTMTGEGWGDVMPSCMSARSWLAVIFFISFIIIVSILLLNLLIAVI 200 (200)
T ss_dssp HHHHSSHHHHHHHHHHHHTTTTCCCCHHHHHHTTSTTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccccccccccccccccccccCCccccccccccccchhHhHHhhhhhhhHHHHHHHHHHhcC
Confidence 34678999999999999998876655443 245788999999999999999999999987
No 10
>KOG2301|consensus
Probab=97.46 E-value=0.00038 Score=72.68 Aligned_cols=110 Identities=15% Similarity=0.321 Sum_probs=82.2
Q ss_pred CCccccCCCcHHHHHHHHHHHHhcCC-C--------------CCCcc---ccccchhHHHHHHHHHHHHHHHHHHHHHHH
Q psy14478 48 PGVKTSLYSSYLSTWMALFQITLGDY-N--------------YPELS---YTVYPTMSKIVFTVFMVLVPILLLNMLIAM 109 (206)
Q Consensus 48 ~~~~~~~f~s~~~s~~~lf~~~lGe~-~--------------~~~~~---~~~~~~~~~ilf~~f~il~~IlLLNLLIAm 109 (206)
.......|.|++.++..+|++..||- + .++.. ++.++..|+++|++|.++++.|.+||+||+
T Consensus 1316 ~i~~~~NF~tf~~a~i~LFr~~Tge~W~~im~~~l~s~p~Cdp~~~~~~~dCGn~~~Ai~YF~Sf~iIs~~IvvNLfVAV 1395 (1592)
T KOG2301|consen 1316 GINDHNNFRTFPNSMVVLFRCATGEGWNDIMDDCLNSKPFCDPDDGNNGTDCGNPTVAIIYFVSWILISSYIVVNLFVAV 1395 (1592)
T ss_pred ccCCCcccccchhheeeeeehhhhhhHHHHHHHHhcCCCCCCCCCCCcccccCCCCcceehhhHHHHHHHHHHHHHHHHH
Confidence 33456789999999999999888753 1 11111 467799999999999999999999999999
Q ss_pred HhhhHHHHhhhhH--------HHHHHHHHHHHHHHHHhCCHHHHHHHHHhcccccC
Q psy14478 110 MGNTYAHVIEQSE--------KEWMKQWAKIVVALERAVSQEDCHRYLQEYSIKLG 157 (206)
Q Consensus 110 m~~ty~~V~~~a~--------~ew~~qrA~~il~~E~~lp~~~~~~~~~~y~~~~~ 157 (206)
+-+.|+-..++++ .+...-|++.==+-++.+|-.....+++.-+.|++
T Consensus 1396 ImeNFs~~t~~~s~~Ls~~d~~~F~~vW~~fDpeatg~I~~~~~~~~lr~L~ppL~ 1451 (1592)
T KOG2301|consen 1396 ILENFSYATEDSSEGLSEDDFEKFYEAWDEFDPEATQEIPYSDLSAFLRSLDPPLD 1451 (1592)
T ss_pred HHhhhhhhcccccccCCcccHHHHHHHHHhcChhhheeeeHhhHHHHHHhcCCccc
Confidence 9999998887766 45666676665556666776666666665555443
No 11
>KOG3733|consensus
Probab=96.33 E-value=0.0057 Score=56.07 Aligned_cols=131 Identities=18% Similarity=0.341 Sum_probs=87.5
Q ss_pred HHHHHHHHHHHHHHHHHHHhhhhhhhhHhhh---------he----eeeeecC-------CccccCCCcHHHHHHHHHHH
Q psy14478 9 AILIFAVPGSWFLLMFFAGAIRLTGPFVTMA---------FY----FLYKGFP-------GVKTSLYSSYLSTWMALFQI 68 (206)
Q Consensus 9 ~l~a~a~~l~w~~ll~f~r~~~~~Gp~v~Mi---------F~----~l~~gf~-------~~~~~~f~s~~~s~~~lf~~ 68 (206)
.++..+.++.|+.++.|++.|+.-..++..+ |. ++|+|+- +.....|.+....--++|..
T Consensus 377 I~LGtstLLVW~GVIRYLgfF~~YNvlIlTl~~alPkVlRFc~ca~mIYlGy~FCGWIVLGPYHdKFrsLntvsECLFSL 456 (566)
T KOG3733|consen 377 ILLGTSTLLVWFGVIRYLGFFKTYNVLILTLKKALPKVLRFCCCAAMIYLGYCFCGWIVLGPYHDKFRSLNTVSECLFSL 456 (566)
T ss_pred HHhCcchhHHHHHHHHHHHHHHhhhHHHHHHHhhhHHHHHHHHHHHHHHHHHhheeeEEecchHHhhhhHHHHHHHHHHh
Confidence 4567788999999999999999877777654 32 2344432 34455677776666777766
Q ss_pred HhcCCCCCC---cccc--ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHHHHHhCCHH
Q psy14478 69 TLGDYNYPE---LSYT--VYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQSEKEWMKQWAKIVVALERAVSQE 143 (206)
Q Consensus 69 ~lGe~~~~~---~~~~--~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~a~~ew~~qrA~~il~~E~~lp~~ 143 (206)
.-|+=-+.. +... ---+++.++..+|.=+-.-+.|.++||+++|+|+++++ .| ....|..
T Consensus 457 INGDDMFaTFA~mqqkS~lvWlFsqiYLYSFISLfIYmvLSLFIAlItdaYDTIK~-------~q--------q~GfpeT 521 (566)
T KOG3733|consen 457 INGDDMFATFATMQQKSTLVWLFSQIYLYSFISLFIYMVLSLFIALITDAYDTIKA-------YQ--------QDGFPET 521 (566)
T ss_pred hCchhHHHHHHHHhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhchHHHHHH-------hh--------hCCCChh
Confidence 666532221 1111 11245677777777777777899999999999999774 22 3467888
Q ss_pred HHHHHHHhccc
Q psy14478 144 DCHRYLQEYSI 154 (206)
Q Consensus 144 ~~~~~~~~y~~ 154 (206)
..+.|..+.+-
T Consensus 522 dLqafi~ec~d 532 (566)
T KOG3733|consen 522 DLQAFITECAD 532 (566)
T ss_pred HHHHHHHHhcc
Confidence 88888765443
No 12
>KOG2302|consensus
Probab=95.59 E-value=0.023 Score=57.09 Aligned_cols=70 Identities=17% Similarity=0.390 Sum_probs=54.8
Q ss_pred ccCCCcHHHHHHHHHHHHhcCC-C---CCCc------cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhh
Q psy14478 52 TSLYSSYLSTWMALFQITLGDY-N---YPEL------SYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQS 121 (206)
Q Consensus 52 ~~~f~s~~~s~~~lf~~~lGe~-~---~~~~------~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~a 121 (206)
...|++|+.+++++|+...|+- + -+.+ +.+-.+++++++|+.|.+....+|+|..||++..--++-.+++
T Consensus 1612 hatf~nfgmafltlfrvstgdnwngimkdtlrdc~~e~~cls~~~sp~yfvsfvltaqfvlvnvvvavlmkhleesnkea 1691 (1956)
T KOG2302|consen 1612 HATFENFGMAFLTLFRVSTGDNWNGIMKDTLRDCTHEESCLSQFVSPLYFVSFVLTAQFVLVNVVVAVLMKHLEESNKEA 1691 (1956)
T ss_pred ccchhhhchHhhhheeeccCCcccchhhhhHhhcccchhhhhhhccchhhhhhhhhhhhHHHHHHHHHHHHHHHhhchhh
Confidence 4579999999999999999873 2 1111 1245689999999999999999999999999887666544433
No 13
>KOG2301|consensus
Probab=95.55 E-value=0.029 Score=59.11 Aligned_cols=64 Identities=14% Similarity=0.430 Sum_probs=50.5
Q ss_pred CCCcHHHHHHHHHHHHhcCCC---CCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q psy14478 54 LYSSYLSTWMALFQITLGDYN---YPELSYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVI 118 (206)
Q Consensus 54 ~f~s~~~s~~~lf~~~lGe~~---~~~~~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~ 118 (206)
.|.+|+.+++++|+.+-|++. |+.... ...++..++|+.+.++.+.++||+++|+..++++.-.
T Consensus 600 ~~~~fp~sfl~vFqlt~e~W~evm~~~~~~-~~~~~~~i~Fi~~~l~gn~vvLnlFlAl~~~n~~~~e 666 (1592)
T KOG2301|consen 600 HFTDFPHSFLSVFQITCEEWTDVMWDCMEA-AGQPLCAIYFIAYFLFGNLVVLNLFLALILDNFESDE 666 (1592)
T ss_pred chhhCHHHHHHHHHHcCCchHHHHHHHHHH-hccchhhhHHHHHHHHHHHHHHHHHHHHHHhhchhhh
Confidence 577899999999995445543 333332 2568888999999999999999999999999988644
No 14
>KOG2302|consensus
Probab=95.19 E-value=0.1 Score=52.71 Aligned_cols=101 Identities=18% Similarity=0.321 Sum_probs=67.5
Q ss_pred CCCcHHHHHHHHHHHHh-cC---CCCCCccc--------cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhh
Q psy14478 54 LYSSYLSTWMALFQITL-GD---YNYPELSY--------TVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQS 121 (206)
Q Consensus 54 ~f~s~~~s~~~lf~~~l-Ge---~~~~~~~~--------~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~a 121 (206)
.|.+.+.+++++|...- .+ +-|+.++. ..+.++-.++|++|.+++....+||++....+.+-+-.+++
T Consensus 1316 NfdnlgqalmSLFvLaSkDgWv~ImyDgldavavdqqPI~nhnpwmllYfIsfllIvsffVlnmfVgvvvenfhKcrqhq 1395 (1956)
T KOG2302|consen 1316 NFDNLGQALMSLFVLASKDGWVNIMYDGLDAVAVDQQPILNHNPWMLLYFISFLLIVSFFVLNMFVGVVVENFHKCRQHQ 1395 (1956)
T ss_pred ccchHHHHHHHHHHHhcccchhhhhccchhhceeeeeccccCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 45677888999997653 11 12333211 12234457899999999999999999999999998877777
Q ss_pred HHHHHHHHHH-HHHHHHHhCCHHHHHHHHHhccc
Q psy14478 122 EKEWMKQWAK-IVVALERAVSQEDCHRYLQEYSI 154 (206)
Q Consensus 122 ~~ew~~qrA~-~il~~E~~lp~~~~~~~~~~y~~ 154 (206)
++|=.+.|-+ .+-.+|+..-..+++.|-..|+.
T Consensus 1396 e~EeArRreEKrLrrlekkrR~Aq~kpyyseyt~ 1429 (1956)
T KOG2302|consen 1396 EAEEARRREEKRLRRLEKKRRAAQRKPYYSEYTM 1429 (1956)
T ss_pred HHHHHHHHHHHHHHHHHHHHHhccCCcccccccH
Confidence 7654333333 44457776666666666555543
No 15
>PF04362 Iron_traffic: Bacterial Fe(2+) trafficking; InterPro: IPR007457 The protein represented by this entry, YggX, serves to protect Fe-S clusters from oxidative damage []. The effect is two-fold: proteins that rely on Fe-S clusters do not become inactivated, and the release of free iron and hydrogen peroxide--a DNA damaging agent--is prevented. These observations are consistent with the hypothesis that YggX chelates free iron, and recent experiments show that YggX can indeed bind Fe(II) in vitro and in vivo []. Furthermore, YggX has a positive effect on the action of at least one Fe(II)-responsive protein. The combined actions of YggX is reminiscent of iron trafficking proteins [], and YggX is therefore proposed to play a role in Fe(II) trafficking []. In Escherichia coli, YggX was shown to be under the transcriptional control of the redox-sensing SoxRS system []. ; GO: 0005506 iron ion binding; PDB: 1YHD_A 1T07_A 1XS8_A.
Probab=79.54 E-value=3.2 Score=30.14 Aligned_cols=44 Identities=11% Similarity=0.355 Sum_probs=32.7
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhccc
Q psy14478 111 GNTYAHVIEQSEKEWMKQWAKIVVALERAVSQEDCHRYLQEYSI 154 (206)
Q Consensus 111 ~~ty~~V~~~a~~ew~~qrA~~il~~E~~lp~~~~~~~~~~y~~ 154 (206)
-..|++|+++|..+|..++..+|-|.--.+.++.-++|+...-.
T Consensus 28 ~~I~~~iSk~AW~~W~~~QTmLINE~rLn~~dp~~R~~L~~qM~ 71 (88)
T PF04362_consen 28 QRIYDNISKEAWQEWLEHQTMLINEYRLNMMDPEARKFLEEQME 71 (88)
T ss_dssp HHHHHHSBHHHHHHHHHHHHHHHHHHT--TTSHHHHHHHHHHHH
T ss_pred HHHHHHHhHHHHHHHHHHHHHHHHhccCCCCCHHHHHHHHHHHH
Confidence 35689999999999999998888877777777776677655433
No 16
>PRK05408 oxidative damage protection protein; Provisional
Probab=77.64 E-value=3.7 Score=29.96 Aligned_cols=41 Identities=15% Similarity=0.429 Sum_probs=30.1
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHh
Q psy14478 111 GNTYAHVIEQSEKEWMKQWAKIVVALERAVSQEDCHRYLQE 151 (206)
Q Consensus 111 ~~ty~~V~~~a~~ew~~qrA~~il~~E~~lp~~~~~~~~~~ 151 (206)
-+.|++|+++|..+|..+...+|-|.--++-++.-++|+..
T Consensus 28 krI~~~ISk~AW~~W~~~QTmLINE~rLn~~dp~ar~~L~~ 68 (90)
T PRK05408 28 KRIYENISKEAWQEWLKHQTMLINEKRLNMMDPEARKFLEE 68 (90)
T ss_pred HHHHHHHHHHHHHHHHHhhHhhhhhccCCCCCHHHHHHHHH
Confidence 35689999999999999887777766555555555556543
No 17
>PF11616 EZH2_WD-Binding: WD repeat binding protein EZH2; InterPro: IPR021654 This family of proteins represents Enhancer of zest homologue 2, (EZH2) a 30 residue peptide which binds to a WD-repeat domain of EED by residues 39-68. EED is a component of PRC2 complex which is involved in gene expression []. This interaction is required for the HMTase activity of PCR2 []. ; GO: 0018024 histone-lysine N-methyltransferase activity; PDB: 2QXV_B.
Probab=50.78 E-value=24 Score=20.42 Aligned_cols=24 Identities=21% Similarity=0.501 Sum_probs=15.6
Q ss_pred HHHhhhHHHHhhhhH---HHHHHHHHH
Q psy14478 108 AMMGNTYAHVIEQSE---KEWMKQWAK 131 (206)
Q Consensus 108 Amm~~ty~~V~~~a~---~ew~~qrA~ 131 (206)
||.+..+++|.+.++ .||+.-|.+
T Consensus 2 alf~sNr~Ki~e~t~iLN~eWk~lRiQ 28 (30)
T PF11616_consen 2 ALFSSNRQKIQERTDILNEEWKKLRIQ 28 (30)
T ss_dssp -HHHHHHHHHHHHHHHHHHHHHH----
T ss_pred chhHhhHHHHHHHHHHHHHHHHHhccC
Confidence 677888999998875 578876654
No 18
>PF09125 COX2-transmemb: Cytochrome C oxidase subunit II, transmembrane; InterPro: IPR015209 This N-terminal domain forms the transmembrane region in subunit II of cytochrome c oxidase from Thermus thermophilus. This domain adopts a tertiary structure consisting of two antiparallel transmembrane helices, in a transmembrane helix hairpin fold []. ; PDB: 1EHK_B 2QPE_B 3S8F_B 4EV3_B 3BVD_B 3S8G_B 3EH3_B 3S3C_B 3S39_B 3QJQ_B ....
Probab=50.32 E-value=39 Score=20.53 Aligned_cols=19 Identities=37% Similarity=0.508 Sum_probs=13.7
Q ss_pred HHHHHHHHHHHHHHHHHHH
Q psy14478 87 SKIVFTVFMVLVPILLLNM 105 (206)
Q Consensus 87 ~~ilf~~f~il~~IlLLNL 105 (206)
+++.|.++|+++.++++--
T Consensus 15 ~Wi~F~l~mi~vFi~li~y 33 (38)
T PF09125_consen 15 GWIAFALAMILVFIALIGY 33 (38)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred hHHHHHHHHHHHHHHHHHH
Confidence 6788888888877666543
No 19
>KOG0498|consensus
Probab=49.44 E-value=2.1e+02 Score=28.65 Aligned_cols=70 Identities=19% Similarity=0.264 Sum_probs=47.7
Q ss_pred hhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHHHHHHHHHHHHHH-HHHhCCHHHHHHHHHhcccc
Q psy14478 85 TMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQSEKEWMKQWAKIVVA-LERAVSQEDCHRYLQEYSIK 155 (206)
Q Consensus 85 ~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~a~~ew~~qrA~~il~-~E~~lp~~~~~~~~~~y~~~ 155 (206)
..+-.+|.++.++...+|-=+||+=|++-.|+..... .+|+-++-++--- --+.+|++.|.|.+..+..+
T Consensus 318 ~~~E~iFsi~~mi~GllL~A~lIGNmt~~iqs~tsR~-~~~r~k~rd~e~~m~~~~LP~~LRqRi~~y~q~k 388 (727)
T KOG0498|consen 318 NMGEKIFSIFIMLFGLLLFAYLIGNMTALLQSLTSRT-EEMRDKMRDAEQWMSRRQLPPDLRQRIRRYEQYK 388 (727)
T ss_pred CcHHHHHHHHHHHHhHHHHHHHHhhHHHhHHHHhHHH-HHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHH
Confidence 4466788888888999999999999998888866533 3454433322211 23579999887776655443
No 20
>PLN03192 Voltage-dependent potassium channel; Provisional
Probab=44.74 E-value=2.5e+02 Score=28.11 Aligned_cols=30 Identities=27% Similarity=0.264 Sum_probs=15.7
Q ss_pred HHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14478 87 SKIVFTVFMVLVPILLLNMLIAMMGNTYAHV 117 (206)
Q Consensus 87 ~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V 117 (206)
..++-+ +.+++.+.+.-.+|+-|++...+.
T Consensus 277 E~i~~i-~~ml~g~~~~a~~ig~i~~li~~~ 306 (823)
T PLN03192 277 EMIFII-FYMLFNLGLTAYLIGNMTNLVVEG 306 (823)
T ss_pred hHHHHH-HHHHHHHHHHHHHHHHHHHHHHHH
Confidence 444433 333445555666666666655543
No 21
>COG2924 Uncharacterized protein conserved in bacteria [Function unknown]
Probab=36.58 E-value=40 Score=24.28 Aligned_cols=40 Identities=13% Similarity=0.323 Sum_probs=25.6
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhCCHH--HHHHHHHhc
Q psy14478 111 GNTYAHVIEQSEKEWMKQWAKIVVALERAVSQE--DCHRYLQEY 152 (206)
Q Consensus 111 ~~ty~~V~~~a~~ew~~qrA~~il~~E~~lp~~--~~~~~~~~y 152 (206)
-+.|+.|++++..+|.... ++|--|+.++.. .-++++..+
T Consensus 28 krI~~~isk~aWa~W~~~Q--TMLINE~rLnm~n~e~Rk~Leqe 69 (90)
T COG2924 28 KRIYNNISKEAWAQWQKKQ--TMLINEKRLNMMNAEHRKLLEQE 69 (90)
T ss_pred HHHHHHHhHHHHHHHHHhh--heeechhhcCcCCHHHHHHHHHH
Confidence 3568899999999996654 555666655433 334454443
No 22
>PRK13726 conjugal transfer pilus assembly protein TraE; Provisional
Probab=31.58 E-value=89 Score=25.72 Aligned_cols=66 Identities=17% Similarity=0.201 Sum_probs=45.0
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH-----------------HhhhhHHHHHHHHHHHHHHHHHhCCHHH
Q psy14478 82 VYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAH-----------------VIEQSEKEWMKQWAKIVVALERAVSQED 144 (206)
Q Consensus 82 ~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~-----------------V~~~a~~ew~~qrA~~il~~E~~lp~~~ 144 (206)
..+.++..+...=.+++..++.|++.+.+....++ -...++.+++.++|..++.+--..+|+.
T Consensus 9 ~~~~~~~~~~~l~~l~~~~~~~~v~l~~~~~~~~~~q~~vlvPp~~~~~~~vs~~~ad~~YLe~ma~~~~~L~lNvTP~n 88 (188)
T PRK13726 9 TSRVMAIAFIFLSVLIVLSLSVNVIQGVNNYRLQNEQRTAVTPMAFNAPFAVSQNSADASYLQQMALSFIALRLNVSPET 88 (188)
T ss_pred chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcEEEEECCcCCccEEEECCcCCHHHHHHHHHHHHHHhcCCChhh
Confidence 44556555555555566667778877777543332 1234678999999999999988888886
Q ss_pred HHH
Q psy14478 145 CHR 147 (206)
Q Consensus 145 ~~~ 147 (206)
...
T Consensus 89 Vd~ 91 (188)
T PRK13726 89 VDA 91 (188)
T ss_pred HHH
Confidence 433
No 23
>PF12065 DUF3545: Protein of unknown function (DUF3545); InterPro: IPR021932 This family of proteins is functionally uncharacterised. This protein is found in bacteria. Proteins in this family are typically between 60 to 77 amino acids in length. This protein has two completely conserved residues (R and L) that may be functionally important.
Probab=28.42 E-value=65 Score=21.66 Aligned_cols=32 Identities=16% Similarity=0.215 Sum_probs=21.2
Q ss_pred eccCCCCCCcchHHhhhhhh---hhhhhhccccCC
Q psy14478 174 SKTAPEEPAPKFEAFSAALD---VMAFTHDIDLGN 205 (206)
Q Consensus 174 ~k~~~~~~~~~~~~~~~~~d---~~~~~~~~~~~~ 205 (206)
.++++++.+||=|++.+==| --.+++|||.+.
T Consensus 16 ~~sr~k~~KRKWREIEAikDr~rL~kEL~d~D~~~ 50 (59)
T PF12065_consen 16 RRSRSKPKKRKWREIEAIKDRQRLRKELQDMDMCF 50 (59)
T ss_pred ccccCCccchhHHHHHHHHHHHHHHHHHHHccccc
Confidence 35566678888888776333 356777887653
No 24
>PF10954 DUF2755: Protein of unknown function (DUF2755); InterPro: IPR020513 This entry contains membrane proteins with no known function.; GO: 0016021 integral to membrane
Probab=24.23 E-value=1.4e+02 Score=21.86 Aligned_cols=26 Identities=27% Similarity=0.410 Sum_probs=22.7
Q ss_pred ccchhHHHHHHHHHHHHHHHHHHHHH
Q psy14478 82 VYPTMSKIVFTVFMVLVPILLLNMLI 107 (206)
Q Consensus 82 ~~~~~~~ilf~~f~il~~IlLLNLLI 107 (206)
...-+++.+|+.|.+-.--=+||||+
T Consensus 20 t~gNiAYAlFVLfcfWaGaQlLn~Lv 45 (100)
T PF10954_consen 20 TPGNIAYALFVLFCFWAGAQLLNMLV 45 (100)
T ss_pred CcchhHHHHHHHHHHHhhHHHHHHHH
Confidence 34578899999999999999999997
No 25
>KOG3188|consensus
Probab=22.47 E-value=4.9e+02 Score=22.17 Aligned_cols=33 Identities=15% Similarity=0.045 Sum_probs=22.1
Q ss_pred HHHH-HHHHHHHHHHHHHhCCHHHHHHHHHhcccc
Q psy14478 122 EKEW-MKQWAKIVVALERAVSQEDCHRYLQEYSIK 155 (206)
Q Consensus 122 ~~ew-~~qrA~~il~~E~~lp~~~~~~~~~~y~~~ 155 (206)
-+|| ..+||+...+--+.+|+.-. +-++.|.++
T Consensus 48 v~e~q~l~rAr~Lr~ng~~l~~~Sf-~aRk~yl~~ 81 (246)
T KOG3188|consen 48 VKEGQYLIRARLLRENGNFLPPQSF-AARKEYLNN 81 (246)
T ss_pred hhhhHHHHHHHHHHhccCCCCHHHH-HHHHHHhhc
Confidence 3455 57899999988888888742 234455553
No 26
>COG4272 Predicted membrane protein [Function unknown]
Probab=22.40 E-value=44 Score=25.40 Aligned_cols=18 Identities=28% Similarity=0.641 Sum_probs=15.2
Q ss_pred HHHHHHHHHHHHHHHHHh
Q psy14478 94 FMVLVPILLLNMLIAMMG 111 (206)
Q Consensus 94 f~il~~IlLLNLLIAmm~ 111 (206)
|..++.|+|.|+++||..
T Consensus 104 YvaitiiVlfnL~famlv 121 (125)
T COG4272 104 YVAITIIVLFNLFFAMLV 121 (125)
T ss_pred EEehHHHHHHHHHHHHHh
Confidence 567788999999999964
Done!