Query psy14478
Match_columns 206
No_of_seqs 173 out of 777
Neff 6.9
Searched_HMMs 29240
Date Fri Aug 16 20:51:48 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14478.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14478hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 4f4l_A ION transport protein; 98.4 1.2E-07 4.2E-12 70.7 3.8 75 49-123 30-106 (112)
2 4dxw_A Navrh, ION transport pr 98.4 2.7E-07 9.1E-12 76.0 4.4 72 48-119 156-228 (229)
3 3rvy_A ION transport protein; 98.1 1.7E-06 5.9E-11 73.3 3.3 75 49-123 172-248 (285)
4 2r9r_B Paddle chimera voltage 94.1 0.21 7.1E-06 45.8 9.3 66 51-120 369-434 (514)
5 1t07_A Hypothetical UPF0269 pr 78.8 1.9 6.3E-05 30.7 3.4 41 112-152 31-71 (94)
6 3beh_A MLL3241 protein; transm 77.4 8.8 0.0003 32.4 8.1 62 52-117 156-217 (355)
7 1orq_C Potassium channel; volt 73.9 22 0.00074 27.9 9.1 61 52-116 160-220 (223)
8 1xs8_A UPF0269 protein YGGX; h 70.7 2.2 7.7E-05 30.1 2.1 41 112-152 29-69 (91)
9 4h33_A LMO2059 protein; bilaye 67.5 11 0.00037 27.9 5.6 58 53-116 39-98 (137)
10 2kav_A Sodium channel protein 62.0 0.92 3.1E-05 34.2 -1.4 21 102-122 14-34 (129)
11 3eff_K Voltage-gated potassium 54.3 59 0.002 23.6 10.4 63 52-120 35-99 (139)
12 2a9h_A Voltage-gated potassium 41.3 65 0.0022 24.2 6.2 62 52-117 79-140 (155)
13 2ih3_C Voltage-gated potassium 24.8 1.9E+02 0.0064 20.5 8.1 61 52-118 56-118 (122)
No 1
>4f4l_A ION transport protein; alpha helical membrane protein, voltage-gated sodium channel membrane, metal transport; 3.49A {Magnetococcus marinus}
Probab=98.43 E-value=1.2e-07 Score=70.66 Aligned_cols=75 Identities=17% Similarity=0.229 Sum_probs=47.4
Q ss_pred CccccCCCcHHHHHHHHHHHHhcCCCCCCcc--ccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHH
Q psy14478 49 GVKTSLYSSYLSTWMALFQITLGDYNYPELS--YTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQSEK 123 (206)
Q Consensus 49 ~~~~~~f~s~~~s~~~lf~~~lGe~~~~~~~--~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~a~~ 123 (206)
......|++++.+++++|+.+.||-=.+.+. .....+.+.++|++|.++.+.+++||+||++.++|++.+++.++
T Consensus 30 ~~~~~~F~~~~~s~ltLF~i~T~e~W~~~~~~~~~~~~~~a~iyFi~fi~i~~fi~lNLfiaVi~~~f~~~~~~~~~ 106 (112)
T 4f4l_A 30 ATFPEWFGDLSKSLYTLFQVMTLESWSMGIVRPVMNVHPNAWVFFIPFIMLTTFTVLNLFIGIIVDAMAITKEQEEE 106 (112)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHTTTSTTTHHHHHHHHHHHHHHHHHHHTTTC-------------
T ss_pred CCccccccCHHHHHHHHHHHHHccccHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444569999999999999998873111121 11234567899999999999999999999999999987766554
No 2
>4dxw_A Navrh, ION transport protein; tetrameric, voltage-gated sodium channel, sodium selective, gated ION channel; HET: BNG PX4; 3.05A {Alpha proteobacterium HIMB114}
Probab=98.36 E-value=2.7e-07 Score=75.99 Aligned_cols=72 Identities=17% Similarity=0.134 Sum_probs=55.1
Q ss_pred CCccccCCCcHHHHHHHHHHHHhcCCCCCCccc-cccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhh
Q psy14478 48 PGVKTSLYSSYLSTWMALFQITLGDYNYPELSY-TVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIE 119 (206)
Q Consensus 48 ~~~~~~~f~s~~~s~~~lf~~~lGe~~~~~~~~-~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~ 119 (206)
.+.....|+|+++++.++|+.+.||-=.+.+.+ ....+.+.++|++|.++++.+++||+||++.|+|++.++
T Consensus 156 ~~~~~~~F~~~~~a~~~lf~~~t~~~w~~i~~~~~~~~~~~~~~f~~~~~i~~~i~lNlfiavi~~~f~~~~~ 228 (229)
T 4dxw_A 156 GNDDPSRWGDLGISLITLFQVLTLSSWETVMLPMQEIYWWSWVYFFSFIIICSITILNLVIAILVDVVIQKKL 228 (229)
T ss_dssp TTTSCTTTSSHHHHHHHHHHHHTTSSTHHHHHHHHTTCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred ccCCcccccCHHHHHHHHHHHHccCCHHHHHHHHHHhCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence 344556799999999999999998731111111 112346889999999999999999999999999997543
No 3
>3rvy_A ION transport protein; tetrameric ION channel, voltage-gated sodium-selective ION C membrane, metal transport; HET: PX4; 2.70A {Arcobacter butzleri} PDB: 3rvz_A* 4ekw_A* 3rw0_A*
Probab=98.06 E-value=1.7e-06 Score=73.33 Aligned_cols=75 Identities=13% Similarity=0.251 Sum_probs=51.5
Q ss_pred CccccCCCcHHHHHHHHHHHHhcCC-CCCCc-cccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhhhHH
Q psy14478 49 GVKTSLYSSYLSTWMALFQITLGDY-NYPEL-SYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQSEK 123 (206)
Q Consensus 49 ~~~~~~f~s~~~s~~~lf~~~lGe~-~~~~~-~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~a~~ 123 (206)
+.....|+|+++++.++|+++.|+. .|+.. ......+.+.++|++|.+++.++++|+++|++.+.|++..++.+.
T Consensus 172 ~~~~~~F~s~~~a~~~~~~~~T~~g~~~di~~p~~~~~~~~~~~f~~~~~i~~~~~lnl~~aii~~~f~~~~~~~~~ 248 (285)
T 3rvy_A 172 ERFPEWFGTLGESFYTLFQVMTLESWSMGIVRPLMEVYPYAWVFFIPFIFVVTFVMINLVVAICVDAMAILNQKEEQ 248 (285)
T ss_dssp TTCHHHHSSHHHHHHHHHHHHTTTTCCCCCHHHHHTTCTTTHHHHHHHHHHHHHHHHHHHHHHHHHHC---------
T ss_pred cccccccCCHHHHHHHHHHHHHhCCCcHHHHHHHHHcCChHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3444569999999999999988763 32332 112334567899999999999999999999999999987665443
No 4
>2r9r_B Paddle chimera voltage gated potassium channel KV; voltage sensor, voltage dependent, ION CH shaker, membrane protein, eukaryotic; HET: NAP PGW; 2.40A {Rattus norvegicus} PDB: 3lnm_B* 3lut_B* 2a79_B*
Probab=94.14 E-value=0.21 Score=45.78 Aligned_cols=66 Identities=8% Similarity=0.137 Sum_probs=46.3
Q ss_pred cccCCCcHHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhh
Q psy14478 51 KTSLYSSYLSTWMALFQITLGDYNYPELSYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQ 120 (206)
Q Consensus 51 ~~~~f~s~~~s~~~lf~~~lGe~~~~~~~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~ 120 (206)
....|.+++++++..+..+.+. .|.+.. +....++ +++++.+++.++++|++||++.+.|+...++
T Consensus 369 ~~~~F~s~~~a~y~~~vT~TTv-GYGDi~--P~t~~gr-~f~~~~~l~G~~~l~l~iavI~~~f~~~~~~ 434 (514)
T 2r9r_B 369 RDSQFPSIPDAFWWAVVSMTTV-GYGDMV--PTTIGGK-IVGSLCAIAGVLTIALPVPVIVSNFNYFYHR 434 (514)
T ss_dssp TTCSCSSHHHHHHHHHHHHTTC-CCSSSC--CCSHHHH-HHHHHHHHHHHHHHHTTHHHHHHHHHHHHHH
T ss_pred CCccccchhhhhheeeeEEEec-ccCCCC--CCCcchH-hhehhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3567889999988877766432 233322 2234555 4667777888999999999999999987653
No 5
>1t07_A Hypothetical UPF0269 protein PA5148; structural genomics, APC5047, conserved hypothetical protein, PSI, protein structure initiative; HET: MSE; 1.80A {Pseudomonas aeruginosa} SCOP: d.279.1.1
Probab=78.77 E-value=1.9 Score=30.69 Aligned_cols=41 Identities=17% Similarity=0.349 Sum_probs=30.6
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Q psy14478 112 NTYAHVIEQSEKEWMKQWAKIVVALERAVSQEDCHRYLQEY 152 (206)
Q Consensus 112 ~ty~~V~~~a~~ew~~qrA~~il~~E~~lp~~~~~~~~~~y 152 (206)
+.|++|+++|..+|..++..+|-|.--.+-.+.-++|+...
T Consensus 31 rIy~~VSkeAW~~W~~~QTMLINE~rLnm~d~~aRk~L~~q 71 (94)
T 1t07_A 31 DIYNNVSRKAWDEWQKHQTMLINERRLNMMNAEDRKFLQQE 71 (94)
T ss_dssp HHHHHCBHHHHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhhHhHhhhccCCCCCHHHHHHHHHH
Confidence 56899999999999998877776665556566666676543
No 6
>3beh_A MLL3241 protein; transmembrane protein, membrane protein; HET: LDA; 3.10A {Mesorhizobium loti} PDB: 2zd9_A*
Probab=77.38 E-value=8.8 Score=32.45 Aligned_cols=62 Identities=5% Similarity=0.058 Sum_probs=40.3
Q ss_pred ccCCCcHHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14478 52 TSLYSSYLSTWMALFQITLGDYNYPELSYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHV 117 (206)
Q Consensus 52 ~~~f~s~~~s~~~lf~~~lGe~~~~~~~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V 117 (206)
...|+++++++.-.+..+. ...|.+.. +..+.+++ +.++.++..++++|+.|+.+++.+++-
T Consensus 156 ~~~f~~~~~s~y~~~~t~t-tvGygd~~--p~t~~~~~-~~~~~~~~g~~~~~~~~~~i~~~~~~~ 217 (355)
T 3beh_A 156 PEKFGSIPQAMWWAVVTLS-TTGYGDTI--PQSFAGRV-LAGAVMMSGIGIFGLWAGILATGFYQE 217 (355)
T ss_dssp HHHHSSHHHHHHHHHHHHT-TCCCSSSC--CCSHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CcccccHHHHHHHHHhhee-ecCCCCCC--CCChhHHH-HHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 3457788888777666543 12233222 23355655 455666777999999999999988763
No 7
>1orq_C Potassium channel; voltage-dependent, KVAP, FAB complex, MEM protein; 3.20A {Aeropyrum pernix} SCOP: f.14.1.1 PDB: 2a0l_A
Probab=73.94 E-value=22 Score=27.91 Aligned_cols=61 Identities=16% Similarity=0.244 Sum_probs=39.1
Q ss_pred ccCCCcHHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy14478 52 TSLYSSYLSTWMALFQITLGDYNYPELSYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAH 116 (206)
Q Consensus 52 ~~~f~s~~~s~~~lf~~~lGe~~~~~~~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~ 116 (206)
.+.+.++.+++.-.+..+. ...|.+.. +..+.++++ .++.++..+.++++.+|.+++.+++
T Consensus 160 ~~~~~~~~~s~y~~~~t~t-TvGyGdi~--P~t~~~~~~-~~~~~~~G~~~~~~~i~~i~~~~~~ 220 (223)
T 1orq_C 160 NSSIKSVFDALWWAVVTAT-TVGYGDVV--PATPIGKVI-GIAVMLTGISALTLLIGTVSNMFQK 220 (223)
T ss_dssp TCSCCSHHHHHHHHHHHHT-TCCCCSSC--CCSHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCCcCcchhHHHhHHhHHh-ccCCCCCC--CCCHhHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 4567888888876655442 12222222 233556654 4555667778899999999988876
No 8
>1xs8_A UPF0269 protein YGGX; helix-turn-helix, metal transport; NMR {Salmonella typhimurium} SCOP: d.279.1.1 PDB: 1yhd_A
Probab=70.69 E-value=2.2 Score=30.09 Aligned_cols=41 Identities=7% Similarity=0.258 Sum_probs=29.5
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Q psy14478 112 NTYAHVIEQSEKEWMKQWAKIVVALERAVSQEDCHRYLQEY 152 (206)
Q Consensus 112 ~ty~~V~~~a~~ew~~qrA~~il~~E~~lp~~~~~~~~~~y 152 (206)
+.|++|+++|..+|..++..+|-|.--.+-.+.-++|+...
T Consensus 29 rIy~~VSk~AW~~W~~~QTmLINE~rLnm~d~~~Rk~L~~q 69 (91)
T 1xs8_A 29 RIYNEISKDAWAQWQHKQTMLINEKKLNMMNAEHRKLLEQE 69 (91)
T ss_dssp HHHTTCBHHHHHHHHHHHHHHHHHHCCCTTSHHHHHHHHHH
T ss_pred HHHHHHhHHHHHHHHHhhHHHhhhcccCCCCHHHHHHHHHH
Confidence 56888999999999988877766655555555556666543
No 9
>4h33_A LMO2059 protein; bilayers, KVLM, lipidic cubic phase (LCP), pore module, ION membrane protein; HET: OLC; 3.10A {Listeria monocytogenes} PDB: 4h37_A
Probab=67.51 E-value=11 Score=27.93 Aligned_cols=58 Identities=12% Similarity=0.225 Sum_probs=35.0
Q ss_pred cCCCcHHHHHHHHHHHH--hcCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy14478 53 SLYSSYLSTWMALFQIT--LGDYNYPELSYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAH 116 (206)
Q Consensus 53 ~~f~s~~~s~~~lf~~~--lGe~~~~~~~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~ 116 (206)
+.+.++.+++.-.+..+ .|-.|. . +....++++.+++++ ..+.++-++++.+++.+.+
T Consensus 39 ~~~~~~~~a~y~~~~T~tTvGyGDi---~--P~t~~gr~~~~~~~~-~g~~~~~~~~~~i~~~~~~ 98 (137)
T 4h33_A 39 PEINNYPDALWWAIVTATTVGYGDI---V--PVTPIGRILASIMML-FGIAFIGMITSTITNFFRC 98 (137)
T ss_dssp SSCCSHHHHHHHHHHHHTTCCCSSS---C--CCSHHHHHHHHHHHH-HHHHHHHHHHHHHHTTTTT
T ss_pred cCCCCHHHHHHHHHHHHHcccCCCC---C--CCCHhHHHHHHHHHH-HHHHHHHHHHHHHHHHHHH
Confidence 45667877765544433 233332 1 334667766555554 5667788888888887764
No 10
>2kav_A Sodium channel protein type 2 subunit alpha; voltage-gated sodium channel, alternative splicing, disease epilepsy, glycoprotein, ION transport; NMR {Homo sapiens} PDB: 2kbi_A
Probab=62.03 E-value=0.92 Score=34.17 Aligned_cols=21 Identities=19% Similarity=0.205 Sum_probs=8.1
Q ss_pred HHHHHHHHHhhhHHHHhhhhH
Q psy14478 102 LLNMLIAMMGNTYAHVIEQSE 122 (206)
Q Consensus 102 LLNLLIAmm~~ty~~V~~~a~ 122 (206)
|+||+||++-+.|+.+.++++
T Consensus 14 ~LNLfIAVIlenF~~~~~~~~ 34 (129)
T 2kav_A 14 LVPRGSHMASENFSVATEESA 34 (129)
T ss_dssp ----------CCSCCTTSSCS
T ss_pred hhheeeeeeeccHHHHHHhhc
Confidence 799999999999998776543
No 11
>3eff_K Voltage-gated potassium channel; FULL length KCSA, bulge helix, cell membrane, ION transport, ionic channel, membrane, transmembrane; 3.80A {Streptomyces lividans}
Probab=54.26 E-value=59 Score=23.56 Aligned_cols=63 Identities=10% Similarity=0.097 Sum_probs=37.3
Q ss_pred ccCCCcHHHHHHHHHHHH--hcCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHhhh
Q psy14478 52 TSLYSSYLSTWMALFQIT--LGDYNYPELSYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVIEQ 120 (206)
Q Consensus 52 ~~~f~s~~~s~~~lf~~~--lGe~~~~~~~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~~~ 120 (206)
.+.+.++.++++-.+..+ .|-.|.. +....+.++.+++ +++.+.++-+.++.+.+.+.+-.++
T Consensus 35 ~~~~~~~~~a~yf~~~T~tTvGyGd~~-----P~t~~~r~~~~~~-~~~G~~~~~~~~~~i~~~~~~~~~~ 99 (139)
T 3eff_K 35 GAQLITYPRALWWSVETATTVGYGDLY-----PVTLWGRLVAVVV-MVAGITSFGLVTAALATWFVGREQE 99 (139)
T ss_dssp TCCCCCHHHHHHHHHHHHTTCCCSSSC-----CCSSHHHHHHHHH-HHHHHHHHHHHHHHHTTTTTHHHHH
T ss_pred CcccCCHHHHHHHHheeeecccCCCCc-----CCCcCHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHHHHH
Confidence 445677887776555443 3433321 2234566665555 4566777888888888777654433
No 12
>2a9h_A Voltage-gated potassium channel; potassium channel, KCSA, structure, membrane protein, metal transport; HET: PCA; NMR {Streptomyces lividans} SCOP: f.14.1.1
Probab=41.33 E-value=65 Score=24.23 Aligned_cols=62 Identities=15% Similarity=0.134 Sum_probs=36.4
Q ss_pred ccCCCcHHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHH
Q psy14478 52 TSLYSSYLSTWMALFQITLGDYNYPELSYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHV 117 (206)
Q Consensus 52 ~~~f~s~~~s~~~lf~~~lGe~~~~~~~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V 117 (206)
.+.|.++.+++.-.+..+. ..-|.+.. +....++++.++++ +..+.++-+.++.+.+.+.+-
T Consensus 79 ~~~~~s~~~a~y~s~vTlt-TVGYGDi~--P~t~~gr~~~~~~~-l~Gv~~~a~~~~~i~~~~~~~ 140 (155)
T 2a9h_A 79 GAALISYPDALWWSVETAT-TVGYGDLY--PVTLWGRCVAVVVM-VAGITSYGLVFAAVATWFVGR 140 (155)
T ss_dssp CSSTTSHHHHHHHHHHHHT-TCCCSSSC--CCSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHSC
T ss_pred CCccCcccceeheeeeeee-cccCCCCC--CCChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHH
Confidence 4567788888765544332 22232222 23355666655554 456667788888888777753
No 13
>2ih3_C Voltage-gated potassium channel; ION channel D-amino acid semi-synthetic, membrane protein; HET: 1EM; 1.72A {Streptomyces lividans} PDB: 2ih1_C* 1r3j_C* 1k4d_C* 1r3i_C* 1k4c_C* 1r3k_C* 1r3l_C* 2bob_C* 2boc_C* 2hvj_C* 2hvk_C* 2itc_C 2itd_C 3gb7_C* 3iga_C* 1jvm_A 1s5h_C* 3ifx_A* 1j95_A 2jk5_C* ...
Probab=24.83 E-value=1.9e+02 Score=20.45 Aligned_cols=61 Identities=10% Similarity=0.063 Sum_probs=36.7
Q ss_pred ccCCCcHHHHHHHHHHHH--hcCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHh
Q psy14478 52 TSLYSSYLSTWMALFQIT--LGDYNYPELSYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAHVI 118 (206)
Q Consensus 52 ~~~f~s~~~s~~~lf~~~--lGe~~~~~~~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~V~ 118 (206)
.+.+.++.+++.-.+..+ .|--|.. +....++++.++++ +..+.++-+.++.+++.+++..
T Consensus 56 ~~~~~~~~~a~y~~~~T~tTvGyGDi~-----P~t~~gr~~~~~~~-~~Gi~~~~~~~~~i~~~~~~~~ 118 (122)
T 2ih3_C 56 GAQLITYPRALWWACETATTVAYGDLY-----PVTLWGRLVAVVVM-VAGITSFGLVTAALATWFVGRE 118 (122)
T ss_dssp TCCCCSHHHHHHHHHHHHTTCCCSSSC-----CCSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
T ss_pred CCccCccccchhheeeeeeeeecCCCC-----CCCccHHHHHHHHH-HHHHHHHHHHHHHHHHHHHHHH
Confidence 455678888775554433 2433321 23355666665444 4666777888888888877644
Done!