Query psy14478
Match_columns 206
No_of_seqs 173 out of 777
Neff 6.9
Searched_HMMs 13730
Date Fri Aug 16 20:51:59 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14478.a3m -d /work/01045/syshi/HHdatabase/scop70.hhm -o /work/01045/syshi/hhsearch_scop/14478hhsearch_scop -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 d1t07a_ d.279.1.1 (A:) Hypothe 74.3 1.5 0.00011 28.8 3.5 42 111-152 30-71 (81)
2 d1r3jc_ f.14.1.1 (C:) Potassiu 67.9 13 0.00095 24.2 8.4 62 51-116 34-95 (103)
3 d1xs8a_ d.279.1.1 (A:) Hypothe 66.2 1.5 0.00011 29.4 2.1 41 112-152 29-69 (91)
4 d2odgc1 a.140.1.1 (C:2-47) Inn 21.5 34 0.0025 19.4 2.5 21 139-159 5-25 (46)
5 d1tc3c_ a.4.1.2 (C:) Transposa 13.7 38 0.0027 19.4 1.4 14 185-198 7-20 (51)
6 d1zq1c1 a.182.1.2 (C:457-512) 9.2 49 0.0036 19.0 0.9 16 140-155 2-17 (56)
7 d2d6fc1 a.182.1.2 (C:445-503) 8.0 65 0.0047 18.7 1.1 16 140-155 2-17 (59)
8 d1b0na1 a.34.1.1 (A:74-108) Si 7.2 1.8E+02 0.013 15.0 3.1 21 131-151 7-28 (35)
9 d1j26a_ d.50.4.1 (A:) Ict1 pro 6.7 2E+02 0.014 18.8 3.3 40 139-187 55-94 (112)
10 d1b0nb_ a.34.1.1 (B:) SinI ant 6.6 1.8E+02 0.013 14.3 3.5 21 130-150 8-29 (31)
No 1
>d1t07a_ d.279.1.1 (A:) Hypothetical protein PA5148 {Pseudomonas aeruginosa [TaxId: 287]}
Probab=74.29 E-value=1.5 Score=28.77 Aligned_cols=42 Identities=17% Similarity=0.334 Sum_probs=32.1
Q ss_pred hhhHHHHhhhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Q psy14478 111 GNTYAHVIEQSEKEWMKQWAKIVVALERAVSQEDCHRYLQEY 152 (206)
Q Consensus 111 ~~ty~~V~~~a~~ew~~qrA~~il~~E~~lp~~~~~~~~~~y 152 (206)
-+.|+.|+++|..+|+.+...+|-|..-.+..+.-++|+...
T Consensus 30 ~~I~~~vSk~AW~~Wl~~QtmLINE~rL~l~~~~~R~~L~~q 71 (81)
T d1t07a_ 30 EDIYNNVSRKAWDEWQKHQTMLINERRLNMMNAEDRKFLQQE 71 (81)
T ss_dssp HHHHHHCBHHHHHHHHHHHHHHHHHHTCCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHhhHhhcccccCCCCCHHHHHHHHHH
Confidence 356889999999999998877777766666666666676544
No 2
>d1r3jc_ f.14.1.1 (C:) Potassium channel protein {Streptomyces coelicolor [TaxId: 1902]}
Probab=67.85 E-value=13 Score=24.24 Aligned_cols=62 Identities=13% Similarity=0.141 Sum_probs=37.8
Q ss_pred cccCCCcHHHHHHHHHHHHhcCCCCCCccccccchhHHHHHHHHHHHHHHHHHHHHHHHHhhhHHH
Q psy14478 51 KTSLYSSYLSTWMALFQITLGDYNYPELSYTVYPTMSKIVFTVFMVLVPILLLNMLIAMMGNTYAH 116 (206)
Q Consensus 51 ~~~~f~s~~~s~~~lf~~~lGe~~~~~~~~~~~~~~~~ilf~~f~il~~IlLLNLLIAmm~~ty~~ 116 (206)
....+.++++++.-.+..+ ....|.|.. +....|+++-++++ +..+.++-+.++.+++.+.+
T Consensus 34 ~~~~~~s~~~aly~~~vT~-tTvGYGDi~--P~t~~gr~~~~~~~-~~Gi~~~~~~~~~i~~~~~~ 95 (103)
T d1r3jc_ 34 PGAQLITYPRALWWSVETA-TTVGYGDLY--PVTLWGRCVAVVVM-VAGITSFGLVTAALATWFVG 95 (103)
T ss_dssp TTCCCCSHHHHHHHHHHHH-TTCCCSSSC--CCSHHHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
T ss_pred CCcccCchhhhhhhheeee-cccccCccc--cCChhHHHHHHHHH-HHHHHHHHHHHHHHHHHHHH
Confidence 3456778888765444333 112222222 33466777655444 46678889999999988775
No 3
>d1xs8a_ d.279.1.1 (A:) Hypothetical protein YggX {Salmonella typhimurium [TaxId: 90371]}
Probab=66.24 E-value=1.5 Score=29.37 Aligned_cols=41 Identities=7% Similarity=0.258 Sum_probs=30.4
Q ss_pred hhHHHHhhhhHHHHHHHHHHHHHHHHHhCCHHHHHHHHHhc
Q psy14478 112 NTYAHVIEQSEKEWMKQWAKIVVALERAVSQEDCHRYLQEY 152 (206)
Q Consensus 112 ~ty~~V~~~a~~ew~~qrA~~il~~E~~lp~~~~~~~~~~y 152 (206)
+.|+.|+++|..+|+.+...+|-|..-.+..+.-++|+...
T Consensus 29 ~I~~~vSk~AW~~Wl~~QtmLINE~rL~l~d~~~R~~L~~q 69 (91)
T d1xs8a_ 29 RIYNEISKDAWAQWQHKQTMLINEKKLNMMNAEHRKLLEQE 69 (91)
T ss_dssp HHHTTCBHHHHHHHHHHHHHHHHHHCCCTTSHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHhhHhhcccccCCCCCHHHHHHHHHH
Confidence 46788999999999998877777666666666656666543
No 4
>d2odgc1 a.140.1.1 (C:2-47) Inner nuclear membrane protein emerin {Human (Homo sapiens) [TaxId: 9606]}
Probab=21.54 E-value=34 Score=19.37 Aligned_cols=21 Identities=29% Similarity=0.512 Sum_probs=18.7
Q ss_pred hCCHHHHHHHHHhcccccCCC
Q psy14478 139 AVSQEDCHRYLQEYSIKLGPG 159 (206)
Q Consensus 139 ~lp~~~~~~~~~~y~~~~~~~ 159 (206)
.+++.+..+.+..|.||.+|-
T Consensus 5 ~lSd~El~~lL~~y~I~HGPv 25 (46)
T d2odgc1 5 DLSDTELTTLLRRYNIPHGPV 25 (46)
T ss_dssp GSCHHHHHHHHHHTTCCCCCC
T ss_pred hhcHHHHHHHHHHhCCCCCCc
Confidence 578888899999999999986
No 5
>d1tc3c_ a.4.1.2 (C:) Transposase tc3a1-65 {Caenorhabditis elegans [TaxId: 6239]}
Probab=13.72 E-value=38 Score=19.44 Aligned_cols=14 Identities=36% Similarity=0.366 Sum_probs=10.6
Q ss_pred hHHhhhhhhhhhhh
Q psy14478 185 FEAFSAALDVMAFT 198 (206)
Q Consensus 185 ~~~~~~~~d~~~~~ 198 (206)
.++..+++|||.-+
T Consensus 7 ~~~e~aqlDVm~~L 20 (51)
T d1tc3c_ 7 SDTERAQLDVMKLL 20 (51)
T ss_dssp CHHHHHHHHHHHHT
T ss_pred hHHHHHHHHHHHHh
Confidence 45677899999853
No 6
>d1zq1c1 a.182.1.2 (C:457-512) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Pyrococcus abyssi [TaxId: 29292]}
Probab=9.17 E-value=49 Score=19.05 Aligned_cols=16 Identities=31% Similarity=0.758 Sum_probs=13.5
Q ss_pred CCHHHHHHHHHhcccc
Q psy14478 140 VSQEDCHRYLQEYSIK 155 (206)
Q Consensus 140 lp~~~~~~~~~~y~~~ 155 (206)
+|...+.||.+.|..+
T Consensus 2 LP~~k~~Ry~~eygLs 17 (56)
T d1zq1c1 2 LPQAKVERYVKEYKLD 17 (56)
T ss_dssp CHHHHHHHHHTTTCCC
T ss_pred CHHHHHHHHHHHcCCC
Confidence 6888899999998774
No 7
>d2d6fc1 a.182.1.2 (C:445-503) Glutamyl-tRNA(Gln) amidotransferase subunit E, GatE, C-terminal domain {Methanobacterium thermoautotrophicum [TaxId: 145262]}
Probab=8.00 E-value=65 Score=18.67 Aligned_cols=16 Identities=19% Similarity=0.547 Sum_probs=13.3
Q ss_pred CCHHHHHHHHHhcccc
Q psy14478 140 VSQEDCHRYLQEYSIK 155 (206)
Q Consensus 140 lp~~~~~~~~~~y~~~ 155 (206)
+|...+.||.+.|..+
T Consensus 2 LP~~k~~R~~~eygLs 17 (59)
T d2d6fc1 2 LPSEKKERIMRDYGLS 17 (59)
T ss_dssp CHHHHHHHHHHTTCCC
T ss_pred CHHHHHHHHHHHcCcC
Confidence 6788899999999773
No 8
>d1b0na1 a.34.1.1 (A:74-108) SinR repressor dimerisation domain {Bacillus subtilis [TaxId: 1423]}
Probab=7.21 E-value=1.8e+02 Score=15.02 Aligned_cols=21 Identities=24% Similarity=0.427 Sum_probs=15.5
Q ss_pred HHHHH-HHHhCCHHHHHHHHHh
Q psy14478 131 KIVVA-LERAVSQEDCHRYLQE 151 (206)
Q Consensus 131 ~~il~-~E~~lp~~~~~~~~~~ 151 (206)
+++-+ +++.+++++.+.|+..
T Consensus 7 ~lVkeAM~SGvSK~QFrEflef 28 (35)
T d1b0na1 7 KLVRDAMTSGVSKKQFREFLDY 28 (35)
T ss_dssp HHHHHHHHSCCCHHHHHHHHHH
T ss_pred HHHHHHHHccCCHHHHHHHHHH
Confidence 35544 7889999998888753
No 9
>d1j26a_ d.50.4.1 (A:) Ict1 protein {Mouse (Mus musculus) [TaxId: 10090]}
Probab=6.69 E-value=2e+02 Score=18.79 Aligned_cols=40 Identities=13% Similarity=0.140 Sum_probs=24.5
Q ss_pred hCCHHHHHHHHHhcccccCCCCCCCcccccceeeeeccCCCCCCcchHH
Q psy14478 139 AVSQEDCHRYLQEYSIKLGPGDEPGTEQRGVLVIKSKTAPEEPAPKFEA 187 (206)
Q Consensus 139 ~lp~~~~~~~~~~y~~~~~~~~~~~~~~~~~~v~~~k~~~~~~~~~~~~ 187 (206)
.+|++.+.+.+..+...+. ..+.++|+.... |-+.+..++
T Consensus 55 ~l~~~~~~~l~~~~~~~i~--------~~g~l~I~s~~~-RsQ~~Nr~~ 94 (112)
T d1j26a_ 55 WIEEPVRQKIALTHKNKIN--------KAGELVLTSESS-RYQFRNLAE 94 (112)
T ss_dssp TSCHHHHHHHHHHTTTTBC--------SSSEEEEEECCC-SSHHHHHHH
T ss_pred cCCHHHHHHHHHHhhhccc--------CCCeEEEEEccc-CCHHHHHHH
Confidence 5788888888887777663 345666655443 444444444
No 10
>d1b0nb_ a.34.1.1 (B:) SinI anti-repressor {Bacillus subtilis [TaxId: 1423]}
Probab=6.58 E-value=1.8e+02 Score=14.34 Aligned_cols=21 Identities=29% Similarity=0.533 Sum_probs=14.4
Q ss_pred HHHHHH-HHHhCCHHHHHHHHH
Q psy14478 130 AKIVVA-LERAVSQEDCHRYLQ 150 (206)
Q Consensus 130 A~~il~-~E~~lp~~~~~~~~~ 150 (206)
..++++ -|..++|+..++|+.
T Consensus 8 velmveakeanispeeirkyll 29 (31)
T d1b0nb_ 8 VELMVEAKEANISPEEIRKYLL 29 (31)
T ss_dssp HHHHHHHHHTTCCHHHHHHHHH
T ss_pred HHHHHHHHHcCCCHHHHHHHHh
Confidence 344444 577899998877764
Done!