BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14479
(125 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2LCK|A Chain A, Structure Of The Mitochondrial Uncoupling Protein 2
Determined By Nmr Molecular Fragment Replacement
Length = 303
Score = 35.8 bits (81), Expect = 0.006, Method: Compositional matrix adjust.
Identities = 26/80 (32%), Positives = 43/80 (53%), Gaps = 9/80 (11%)
Query: 14 NPIWFVKTRLQLAHVQ--HGSQVTAMHIIRREYLTSGIKGFYKGITASYFGITE-TIIHF 70
+P+ VKTR + + H + A+ ++R+E G + FYKG S+ + ++ F
Sbjct: 221 SPVDVVKTRYMNSALGQYHSAGHCALTMLRKE----GPRAFYKGFMPSFLRLGSWNVVMF 276
Query: 71 VIYEAIKAKLMAVRAHQSLD 90
V YE +K LMA A+QS +
Sbjct: 277 VTYEQLKRALMA--AYQSRE 294
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 28.1 bits (61), Expect = 1.3, Method: Composition-based stats.
Identities = 12/26 (46%), Positives = 17/26 (65%)
Query: 54 KGITASYFGITETIIHFVIYEAIKAK 79
KGIT++Y ++ T + IYEA K K
Sbjct: 284 KGITSAYLPLSATAVKREIYEAFKGK 309
>pdb|1CYW|A Chain A, Quinol Oxidase (Periplasmic Fragment Of Subunit Ii) (Cyoa)
Length = 205
Score = 28.1 bits (61), Expect = 1.3, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 4 TIRFSACSATNPIWFVKTRLQLAH----VQHGSQVTAMHIIR-REYLTSGIKGFYKGITA 58
T+ A A P++F T + + + GSQ+ AM ++ R +L + G Y GI+A
Sbjct: 39 TVNEIAFPANTPVYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISA 98
Query: 59 SYFG 62
SY G
Sbjct: 99 SYSG 102
>pdb|1FFT|B Chain B, The Structure Of Ubiquinol Oxidase From Escherichia Coli
pdb|1FFT|G Chain G, The Structure Of Ubiquinol Oxidase From Escherichia Coli
Length = 315
Score = 27.3 bits (59), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 21/64 (32%), Positives = 33/64 (51%), Gaps = 5/64 (7%)
Query: 4 TIRFSACSATNPIWFVKTRLQLAHV----QHGSQVTAMHIIR-REYLTSGIKGFYKGITA 58
T+ A A P++F T + + + GSQ+ AM ++ R +L + G Y GI+A
Sbjct: 149 TVNEIAFPANTPVYFKVTSNSVMNSFFIPRLGSQIYAMAGMQTRLHLIANEPGTYDGISA 208
Query: 59 SYFG 62
SY G
Sbjct: 209 SYSG 212
>pdb|3NVA|A Chain A, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
pdb|3NVA|B Chain B, Dimeric Form Of Ctp Synthase From Sulfolobus Solfataricus
Length = 535
Score = 26.9 bits (58), Expect = 3.2, Method: Composition-based stats.
Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 3/52 (5%)
Query: 51 GFYKGITASYFGITETIIHFVIYEAIKAKLMAVRAHQSLDGDKKTRDFVEFM 102
G Y + SY I E I H Y ++ KL+ + +S D + T++ E +
Sbjct: 300 GKYTKLKDSYISIKEAIYHASAYIGVRPKLIWI---ESTDLESDTKNLNEIL 348
>pdb|1FB5|A Chain A, Low Resolution Structure Of Ovine Ornithine
Transcarbmoylase In The Unliganded State
Length = 320
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 25 LAHVQHGSQVTAMHIIRREYLTSGIKGFYKGITASYFGITETIIHFVIYEAIK 77
L+ + H Q+ A ++ +E+ +S KG+T S+ G I+H ++ A K
Sbjct: 129 LSDLYHPIQILADYLTLQEHYSS-----LKGLTLSWIGDGNNILHSIMMSAAK 176
>pdb|1OTH|A Chain A, Crystal Structure Of Human Ornithine Transcarbamoylase
Complexed With N-Phosphonacetyl-L-Ornithine
pdb|1C9Y|A Chain A, Human Ornithine Transcarbamylase: Crystallographic
Insights Into Substrate Recognition And Catalytic
Mechanism
pdb|1EP9|A Chain A, Human Ornithine Transcarbamylase: Crystallographic
Insights Into Substrate Recognition And Conformational
Change
pdb|1FVO|A Chain A, Crystal Structure Of Human Ornithine Transcarbamylase
Complexed With Carbamoyl Phosphate
pdb|1FVO|B Chain B, Crystal Structure Of Human Ornithine Transcarbamylase
Complexed With Carbamoyl Phosphate
Length = 321
Score = 26.9 bits (58), Expect = 3.2, Method: Compositional matrix adjust.
Identities = 15/53 (28%), Positives = 28/53 (52%), Gaps = 5/53 (9%)
Query: 25 LAHVQHGSQVTAMHIIRREYLTSGIKGFYKGITASYFGITETIIHFVIYEAIK 77
L+ + H Q+ A ++ +E+ +S KG+T S+ G I+H ++ A K
Sbjct: 130 LSDLYHPIQILADYLTLQEHYSS-----LKGLTLSWIGDGNNILHSIMMSAAK 177
>pdb|2EG5|A Chain A, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|C Chain C, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|E Chain E, The Structure Of Xanthosine Methyltransferase
pdb|2EG5|G Chain G, The Structure Of Xanthosine Methyltransferase
Length = 372
Score = 26.2 bits (56), Expect = 4.4, Method: Compositional matrix adjust.
Identities = 13/29 (44%), Positives = 19/29 (65%), Gaps = 2/29 (6%)
Query: 40 IRREYLTSGIKGFYKGITASYFGITETII 68
I+ EY+ S ++ Y+ I AS+FG E II
Sbjct: 308 IKAEYVASSVRAVYEPILASHFG--EAII 334
>pdb|2CQ8|A Chain A, Solution Structure Of Rsgi Ruh-033, A Pp-Binding Domain
Of 10-Fthfdh From Human Cdna
Length = 110
Score = 25.8 bits (55), Expect = 7.1, Method: Compositional matrix adjust.
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 2/33 (6%)
Query: 46 TSGIKGFYKGITASYFGITETIIHFVIYEAIKA 78
+SG GF+KG +S +TE V EA+++
Sbjct: 2 SSGSSGFFKGAASSVLELTEA--ELVTAEAVRS 32
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.326 0.135 0.413
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,443,471
Number of Sequences: 62578
Number of extensions: 109399
Number of successful extensions: 283
Number of sequences better than 100.0: 9
Number of HSP's better than 100.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 281
Number of HSP's gapped (non-prelim): 9
length of query: 125
length of database: 14,973,337
effective HSP length: 86
effective length of query: 39
effective length of database: 9,591,629
effective search space: 374073531
effective search space used: 374073531
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)