Query psy14479
Match_columns 125
No_of_seqs 117 out of 1024
Neff 10.0
Searched_HMMs 29240
Date Fri Aug 16 20:53:09 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14479.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14479hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 2lck_A Mitochondrial uncouplin 100.0 1.7E-28 5.8E-33 169.5 9.4 116 1-124 110-228 (303)
2 1okc_A ADP, ATP carrier protei 99.9 5.3E-28 1.8E-32 166.5 8.7 113 1-123 118-234 (297)
3 1okc_A ADP, ATP carrier protei 99.9 9.8E-28 3.4E-32 165.2 9.7 119 1-123 13-137 (297)
4 2lck_A Mitochondrial uncouplin 99.9 7.4E-28 2.5E-32 166.2 6.7 114 1-123 7-129 (303)
5 2acm_A Mucin-1; auto-catalytic 41.7 3.5 0.00012 21.1 -0.7 20 34-53 40-59 (66)
6 1y9i_A Low temperature require 37.7 76 0.0026 20.0 5.0 49 64-115 111-159 (178)
7 2a3d_A Protein (de novo three- 37.6 41 0.0014 16.9 4.0 42 15-59 10-51 (73)
8 1rfz_A Hypothetical protein AP 32.8 56 0.0019 20.4 3.5 49 64-115 113-161 (168)
9 3i71_A Ethanolamine utilizatio 27.6 3.8 0.00013 20.9 -2.0 21 104-124 17-37 (68)
10 2kxa_A Haemagglutinin HA2 chai 19.4 68 0.0023 13.6 1.5 9 104-112 3-11 (30)
No 1
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.95 E-value=1.7e-28 Score=169.46 Aligned_cols=116 Identities=20% Similarity=0.227 Sum_probs=101.2
Q ss_pred ChhhHHHHHHhhhccHHHHHHHHHhcccC--CCCcccHHHHHHHHHHhhcHhhhhchhhhhhhh-hhHHHHHHHHHHHHH
Q psy14479 1 MAITIRFSACSATNPIWFVKTRLQLAHVQ--HGSQVTAMHIIRREYLTSGIKGFYKGITASYFG-ITETIIHFVIYEAIK 77 (125)
Q Consensus 1 ~g~~ag~~~~~v~~Pl~~vk~r~q~~~~~--~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~-~~~~~~~~~~y~~~k 77 (125)
+|++||+++.++++|+|++|+|+|++... ...|.+.++++++|+++||++|||||+.+++++ +|+++++|.+||.+|
T Consensus 110 ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~~ye~~k 189 (303)
T 2lck_A 110 AGSTTGALAVAVAQPTDVVKVRFQAQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAIVNCAELVTYDLIK 189 (303)
T ss_dssp HHHHHHHHHHHHSCHHHHHHHHHHHSCSCCCSSSCCCHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHcCcHHHHHHHHhcccccCCCCCCCCHHHHHHHHHHhcChhhhhCCccHHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999998742 223899999999999999999999999999998 689999999999999
Q ss_pred HHHHhhhccCCCCCCCCcccHHHHHHHHHHHHHHHHHhhccccccCC
Q psy14479 78 AKLMAVRAHQSLDGDKKTRDFVEFMMAGAVSKTCASCIAYPHGKYPN 124 (125)
Q Consensus 78 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvv~~ 124 (125)
+.+.+.. ....+....+++|++||++++++++|+|+||.
T Consensus 190 ~~l~~~~--------~~~~~~~~~~~~g~~ag~~~~~~~~P~dvvkt 228 (303)
T 2lck_A 190 DTLLKAN--------LMTDDLPCHFTSAFGAGFCTTVIASPVDVVKT 228 (303)
T ss_dssp HTTTTTT--------SCCSCHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHhcc--------CCCCchHHHHHHHHHHHHHHHHHcCHHHHHHH
Confidence 9876541 22345667899999999999999999999973
No 2
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.95 E-value=5.3e-28 Score=166.47 Aligned_cols=113 Identities=19% Similarity=0.273 Sum_probs=98.8
Q ss_pred ChhhHHHHHHhhhccHHHHHHHHHhcccC---CCCcccHHHHHHHHHHhhcHhhhhchhhhhhhh-hhHHHHHHHHHHHH
Q psy14479 1 MAITIRFSACSATNPIWFVKTRLQLAHVQ---HGSQVTAMHIIRREYLTSGIKGFYKGITASYFG-ITETIIHFVIYEAI 76 (125)
Q Consensus 1 ~g~~ag~~~~~v~~Pl~~vk~r~q~~~~~---~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~-~~~~~~~~~~y~~~ 76 (125)
+|++||+++.++++|+|+||+|+|++... ...|.+.++++++++++||++|||||+.+++++ +|+++++|.+||.+
T Consensus 118 ag~~ag~~~~~~~~Pld~vktrlq~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye~~ 197 (297)
T 1okc_A 118 SGGAAGATSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSDGLRGLYQGFNVSVQGIIIYRAAYFGVYDTA 197 (297)
T ss_dssp HHHHHHHHHHHHHHHHHHHHHHHHHCCCSSTTTCSCSSHHHHHHHHHHHHCHHHHTTTHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHhCcHHHHHHHHhccccCCCcCcCCCCHHHHHHHHHHhccHHHhcCCchHHHHHHHHHHHHHHHHHHHH
Confidence 37889999999999999999999998532 123899999999999999999999999999998 68999999999999
Q ss_pred HHHHHhhhccCCCCCCCCcccHHHHHHHHHHHHHHHHHhhccccccC
Q psy14479 77 KAKLMAVRAHQSLDGDKKTRDFVEFMMAGAVSKTCASCIAYPHGKYP 123 (125)
Q Consensus 77 k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvv~ 123 (125)
|+.+.+. ...+....+++|++||++++++++|+|+||
T Consensus 198 k~~~~~~----------~~~~~~~~~~~g~~ag~~a~~~t~P~dvvk 234 (297)
T 1okc_A 198 KGMLPDP----------KNVHIIVSWMIAQTVTAVAGLVSYPFDTVR 234 (297)
T ss_dssp HHSSCGG----------GCSCHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHhccC----------CCccHHHHHHHHHHHHHHHHHhcChHHHHH
Confidence 9866433 123466778999999999999999999997
No 3
>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial transporter, nucleotide translocation, membrane protein, transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP: f.42.1.1 PDB: 2c3e_A*
Probab=99.95 E-value=9.8e-28 Score=165.15 Aligned_cols=119 Identities=18% Similarity=0.204 Sum_probs=99.7
Q ss_pred ChhhHHHHHHhhhccHHHHHHHHHhcccC-----CCCcccHHHHHHHHHHhhcHhhhhchhhhhhhh-hhHHHHHHHHHH
Q psy14479 1 MAITIRFSACSATNPIWFVKTRLQLAHVQ-----HGSQVTAMHIIRREYLTSGIKGFYKGITASYFG-ITETIIHFVIYE 74 (125)
Q Consensus 1 ~g~~ag~~~~~v~~Pl~~vk~r~q~~~~~-----~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~-~~~~~~~~~~y~ 74 (125)
+|++||+++.++++|+|++|+|+|++... ...|.++++++++++++||++|||||+.+++++ +|..+++|.+||
T Consensus 13 aG~~ag~~~~~~~~Pld~vKtrlQ~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~~~f~~ye 92 (297)
T 1okc_A 13 AGGVAAAISKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIRYFPTQALNFAFKD 92 (297)
T ss_dssp HHHHHHHHHHHHTHHHHHHHHHHHHGGGCSSCCGGGSCCSHHHHHHHHHHHHCGGGGGTTTHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhcCcHHHHHHHHHhcccccccccccccccHHHHHHHHHhccchhheecccHHHHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999998642 123899999999999999999999999999998 689999999999
Q ss_pred HHHHHHHhhhccCCCCCCCCcccHHHHHHHHHHHHHHHHHhhccccccC
Q psy14479 75 AIKAKLMAVRAHQSLDGDKKTRDFVEFMMAGAVSKTCASCIAYPHGKYP 123 (125)
Q Consensus 75 ~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvv~ 123 (125)
.+|+.+.+... ............+++|++||++++++++|+|+||
T Consensus 93 ~~k~~~~~~~~----~~~~~~~~~~~~~~ag~~ag~~~~~~~~Pld~vk 137 (297)
T 1okc_A 93 KYKQIFLGGVD----RHKQFWRYFAGNLASGGAAGATSLCFVYPLDFAR 137 (297)
T ss_dssp HHHHHHHTTCC----TTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHhccccC----cccchHHHHHHHHHHHHHHHHHHHHHhCcHHHHH
Confidence 99996544310 0111123456789999999999999999999987
No 4
>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton translocator, mitochondrial carrier transport protein, structural genomics; NMR {Mus musculus}
Probab=99.94 E-value=7.4e-28 Score=166.25 Aligned_cols=114 Identities=19% Similarity=0.179 Sum_probs=100.7
Q ss_pred ChhhHHHHHHhhhccHHHHHHHHHhcccC--------CCCcccHHHHHHHHHHhhcHhhhhchhhhhhhh-hhHHHHHHH
Q psy14479 1 MAITIRFSACSATNPIWFVKTRLQLAHVQ--------HGSQVTAMHIIRREYLTSGIKGFYKGITASYFG-ITETIIHFV 71 (125)
Q Consensus 1 ~g~~ag~~~~~v~~Pl~~vk~r~q~~~~~--------~~~~~~~~~~~~~i~~~~G~~gly~G~~~~~~~-~~~~~~~~~ 71 (125)
+|++||+++.++++|+|++|+|+|++... ...|.+.++++++++++||+++||||+.+++++ +|+.+++|.
T Consensus 7 aG~~ag~~~~~~~~Pld~iKtrlQ~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~eG~~glyrG~~~~l~~~~~~~~i~f~ 86 (303)
T 2lck_A 7 GAGTAACIADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTEGPRSLYNGLVAGLQRQMSFASVRIG 86 (303)
T ss_dssp HHHHHHHHHHHTTHHHHHHHHHSSCCTTCCSHHHHCSCSSCSCHHHHHHHHHHHHCHHHHHSSHHHHHHHHHHHHHHTTT
T ss_pred hHHHHHHHHHHHcCcHHHHHHHHHhhhccccccccccCCCCCCHHHHHHHHHHhhCHHHHHcCCHHHHHHHHHHHHHHHH
Confidence 48899999999999999999999998753 123899999999999999999999999999998 689999999
Q ss_pred HHHHHHHHHHhhhccCCCCCCCCcccHHHHHHHHHHHHHHHHHhhccccccC
Q psy14479 72 IYEAIKAKLMAVRAHQSLDGDKKTRDFVEFMMAGAVSKTCASCIAYPHGKYP 123 (125)
Q Consensus 72 ~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~~~P~dvv~ 123 (125)
+||.+|+.+.+.. ...+....+++|++||+++.++++|+|+||
T Consensus 87 ~ye~~k~~~~~~~---------~~~~~~~~~~ag~~ag~~~~~~~~Pld~vk 129 (303)
T 2lck_A 87 LYDSVKQFYTKGS---------EHAGIGSRLLAGSTTGALAVAVAQPTDVVK 129 (303)
T ss_dssp HHHHHHHHHSCCC---------SSCCHHHHHHHHHHHHHHHHHHSCHHHHHH
T ss_pred HHHHHHHHHhcCC---------cCCcHHHHHHHHHHHHHHHHHHcCcHHHHH
Confidence 9999999875430 135677889999999999999999999987
No 5
>2acm_A Mucin-1; auto-catalytic proteolysis, structural protein; NMR {Homo sapiens}
Probab=41.75 E-value=3.5 Score=21.07 Aligned_cols=20 Identities=15% Similarity=0.245 Sum_probs=16.6
Q ss_pred ccHHHHHHHHHHhhcHhhhh
Q psy14479 34 VTAMHIIRREYLTSGIKGFY 53 (125)
Q Consensus 34 ~~~~~~~~~i~~~~G~~gly 53 (125)
+++.+.+.+||+++++.|++
T Consensus 40 r~is~L~lqIykq~~FLgl~ 59 (66)
T 2acm_A 40 RDISEMFLQIYKQGGFLGLS 59 (66)
T ss_dssp HHHHHHHHHHCTTTTEEEEE
T ss_pred HHHHHHHHHHHccCCeeeee
Confidence 56778888999999988875
No 6
>1y9i_A Low temperature requirement C protein; structural genomics, protein structure initiative, PSI; 1.80A {Listeria monocytogenes} SCOP: a.195.1.1
Probab=37.67 E-value=76 Score=19.98 Aligned_cols=49 Identities=6% Similarity=0.153 Sum_probs=29.7
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccHHHHHHHHHHHHHHHHHh
Q psy14479 64 TETIIHFVIYEAIKAKLMAVRAHQSLDGDKKTRDFVEFMMAGAVSKTCASCI 115 (125)
Q Consensus 64 ~~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~ 115 (125)
......|..||..|-........ ..+.....++..+++|..|+++..++
T Consensus 111 ~~gf~~Fr~fDi~KPgpI~~ld~---~~~gg~gimlDDivAgi~A~~~~~l~ 159 (178)
T 1y9i_A 111 SIGFTNYGYIDKVKPGILAKLNE---HDGIAVHTFLDDIVGAIAAAAASRLA 159 (178)
T ss_dssp GGGHHHHHHHHHHCCTHHHHTTC---CCSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHhhhc---ccCCCCcchHHHHHHHHHHHHHHHHH
Confidence 35566677888877665543111 11234455677788888888876544
No 7
>2a3d_A Protein (de novo three-helix bundle); NMR {Synthetic construct} SCOP: k.9.1.1
Probab=37.56 E-value=41 Score=16.87 Aligned_cols=42 Identities=19% Similarity=0.059 Sum_probs=25.2
Q ss_pred cHHHHHHHHHhcccCCCCcccHHHHHHHHHHhhcHhhhhchhhhh
Q psy14479 15 PIWFVKTRLQLAHVQHGSQVTAMHIIRREYLTSGIKGFYKGITAS 59 (125)
Q Consensus 15 Pl~~vk~r~q~~~~~~~~~~~~~~~~~~i~~~~G~~gly~G~~~~ 59 (125)
-+..+|+|+|.-+... ..+...-+.|..-|.-..-|+|-.-+
T Consensus 10 rlaaiktrlqalggse---aelaafekeiaafeselqaykgkgnp 51 (73)
T 2a3d_A 10 RLAAIKTRLQALGGSE---AELAAFEKEIAAFESELQAYKGKGNP 51 (73)
T ss_dssp HHHHHHHHHHHCSSGG---GTHHHHHHHHHHHHHHHHHSSSCCSS
T ss_pred HHHHHHHHHHHhcCcH---HHHHHHHHHHHHHHHHHHHhccCCCh
Confidence 4567999999976432 33444445565555555667665443
No 8
>1rfz_A Hypothetical protein APC35681; structural genomics, PSI, protein structure initiative, midwest center for structural genomics; 2.80A {Geobacillus stearothermophilus} SCOP: a.195.1.1
Probab=32.84 E-value=56 Score=20.36 Aligned_cols=49 Identities=6% Similarity=0.137 Sum_probs=29.4
Q ss_pred hHHHHHHHHHHHHHHHHHhhhccCCCCCCCCcccHHHHHHHHHHHHHHHHHh
Q psy14479 64 TETIIHFVIYEAIKAKLMAVRAHQSLDGDKKTRDFVEFMMAGAVSKTCASCI 115 (125)
Q Consensus 64 ~~~~~~~~~y~~~k~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ag~~~~~~ 115 (125)
......|..||..|-.....-.++ .+.....++..+++|..|+++..++
T Consensus 113 ~~gf~~Fr~fDi~KPgpI~~ld~~---~~gg~gimlDDivAgi~A~~~~~l~ 161 (168)
T 1rfz_A 113 SIGFTNYGYIDKQKPGILQYLNDK---STGKCNTFLDDIVGAIAAAASSRLA 161 (168)
T ss_dssp TTHHHHHHHHHHHCCTHHHHHHCS---SSSCCCTTHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHhccchhHHHhhcc---cCCCCcchHHHHHHHHHHHHHHHHH
Confidence 455667788888876654431111 1234455677788888888776443
No 9
>3i71_A Ethanolamine utilization protein EUTK; helix-turn-helix, unknown function; HET: FLC; 2.10A {Escherichia coli}
Probab=27.57 E-value=3.8 Score=20.88 Aligned_cols=21 Identities=24% Similarity=0.354 Sum_probs=17.4
Q ss_pred HHHHHHHHHHHhhccccccCC
Q psy14479 104 AGAVSKTCASCIAYPHGKYPN 124 (125)
Q Consensus 104 ~g~~ag~~~~~~~~P~dvv~~ 124 (125)
-|+.+|=+++-+.+|+|..||
T Consensus 17 QGMTaGEVAA~f~w~Le~ar~ 37 (68)
T 3i71_A 17 QGMTAGEVAAHFGWPLEKARN 37 (68)
T ss_dssp TCBCHHHHHHHHTCCHHHHHH
T ss_pred ccccHHHHHHHhCCcHHHHHH
Confidence 377888899999999988765
No 10
>2kxa_A Haemagglutinin HA2 chain peptide; fusion peptide, viral protein, immune system; NMR {Influenza a virus}
Probab=19.35 E-value=68 Score=13.63 Aligned_cols=9 Identities=22% Similarity=0.242 Sum_probs=4.9
Q ss_pred HHHHHHHHH
Q psy14479 104 AGAVSKTCA 112 (125)
Q Consensus 104 ~g~~ag~~~ 112 (125)
.|++||++.
T Consensus 3 FGAIAGfie 11 (30)
T 2kxa_A 3 FGAIAGFIE 11 (30)
T ss_dssp HHHHHHHHH
T ss_pred chhhhhhhh
Confidence 456666553
Done!