RPS-BLAST 2.2.26 [Sep-21-2011]

Database: pdb70 
           27,921 sequences; 6,701,793 total letters

Searching..................................................done

Query= psy14479
         (125 letters)



>1okc_A ADP, ATP carrier protein heart isoform T1; mitochondrial
           transporter, nucleotide translocation, membrane protein,
           transport; HET: CXT CDL LDM PC1; 2.2A {Bos taurus} SCOP:
           f.42.1.1 PDB: 2c3e_A*
          Length = 297

 Score = 60.7 bits (148), Expect = 3e-12
 Identities = 26/122 (21%), Positives = 43/122 (35%), Gaps = 28/122 (22%)

Query: 8   SACSATNPIWFVKTRLQLAHVQHGSQV-------TAMHIIRREYLTSGIKGFYKGITASY 60
           ++     P+ F +TRL     +  +Q            I + +    G++G Y+G   S 
Sbjct: 125 TSLCFVYPLDFARTRLAADVGKGAAQREFTGLGNCITKIFKSD----GLRGLYQGFNVSV 180

Query: 61  FGITETIIH----FVIYEAIKAKLMAVRAHQSLDGDKKTRDFVEFMMAGAVSKTCASCIA 116
            GI   II+    F +Y+  K  L           D K    +   M        A  ++
Sbjct: 181 QGI---IIYRAAYFGVYDTAKGMLP----------DPKNVHIIVSWMIAQTVTAVAGLVS 227

Query: 117 YP 118
           YP
Sbjct: 228 YP 229



 Score = 48.4 bits (116), Expect = 6e-08
 Identities = 16/76 (21%), Positives = 29/76 (38%), Gaps = 11/76 (14%)

Query: 9   ACSATNPIWFVKTRLQLAHVQHGSQV-------TAMHIIRREYLTSGIKGFYKGITASYF 61
           A   + P   V+ R+ +   + G+ +           I + E    G K F+KG  ++  
Sbjct: 223 AGLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDE----GPKAFFKGAWSNVL 278

Query: 62  GITETIIHFVIYEAIK 77
                    V+Y+ IK
Sbjct: 279 RGMGGAFVLVLYDEIK 294



 Score = 48.0 bits (115), Expect = 8e-08
 Identities = 24/117 (20%), Positives = 41/117 (35%), Gaps = 16/117 (13%)

Query: 11  SATNPIWFVKTRLQLAHVQHGSQVTA--------MHIIRREYLTSGIKGFYKGITASYFG 62
           +A  PI  VK  LQ   VQH S+  +        +  + R     G   F++G  A+   
Sbjct: 23  TAVAPIERVKLLLQ---VQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGNLANVIR 79

Query: 63  IT-ETIIHFVIYEAIKAKLMAVRAHQSLDGDKKTRDFVEFMMAGAVSKTCASCIAYP 118
                 ++F   +  K   +           +  R F   + +G  +   + C  YP
Sbjct: 80  YFPTQALNFAFKDKYKQIFLGGVDRH----KQFWRYFAGNLASGGAAGATSLCFVYP 132


>2lck_A Mitochondrial uncoupling protein 2; membrane protein, proton
           translocator, mitochondrial carrier transport protein,
           structural genomics; NMR {Mus musculus}
          Length = 303

 Score = 56.5 bits (137), Expect = 8e-11
 Identities = 23/123 (18%), Positives = 42/123 (34%), Gaps = 26/123 (21%)

Query: 9   ACSATNPIWFVKTRLQLAHVQHGSQV------------TAMHIIRREYLTSGIKGFYKGI 56
           A   T P+   K RLQ+     G               T + ++R E    G +  Y G+
Sbjct: 15  ADLITFPLDTAKVRLQIQGESQGLVRTAASAQYRGVLGTILTMVRTE----GPRSLYNGL 70

Query: 57  TASYFG-ITETIIHFVIYEAIKAKLMAVRAHQSLDGDKKTRDFVEFMMAGAVSKTCASCI 115
            A     ++   +   +Y+++K        H               ++AG+ +   A  +
Sbjct: 71  VAGLQRQMSFASVRIGLYDSVKQFYTKGSEHAG---------IGSRLLAGSTTGALAVAV 121

Query: 116 AYP 118
           A P
Sbjct: 122 AQP 124



 Score = 50.0 bits (120), Expect = 2e-08
 Identities = 23/79 (29%), Positives = 37/79 (46%), Gaps = 7/79 (8%)

Query: 7   FSACSATNPIWFVKTRLQLAHVQHGSQVT--AMHIIRREYLTSGIKGFYKGITASYFGIT 64
           F      +P+  VKTR   + +         A+ ++R+E    G + FYKG   S+  + 
Sbjct: 214 FCTTVIASPVDVVKTRYMNSALGQYHSAGHCALTMLRKE----GPRAFYKGFMPSFLRLG 269

Query: 65  -ETIIHFVIYEAIKAKLMA 82
              ++ FV YE +K  LMA
Sbjct: 270 SWNVVMFVTYEQLKRALMA 288



 Score = 40.0 bits (94), Expect = 6e-05
 Identities = 23/114 (20%), Positives = 37/114 (32%), Gaps = 13/114 (11%)

Query: 9   ACSATNPIWFVKTRLQLAHVQHGSQVT---AMHIIRREYLTSGIKGFYKGITASYF-GIT 64
           A +   P   VK R Q A  + G        +   +      GI+G +KG + +      
Sbjct: 118 AVAVAQPTDVVKVRFQ-AQARAGGGRRYQSTVEAYKTIAREEGIRGLWKGTSPNVARNAI 176

Query: 65  ETIIHFVIYEAIKAKLMAVRAHQSLDGDKKTRDFVEFMMAGAVSKTCASCIAYP 118
                 V Y+ IK  L+       +  D           +   +  C + IA P
Sbjct: 177 VNCAELVTYDLIKDTLL---KANLMTDDLPCH-----FTSAFGAGFCTTVIASP 222


>3nxq_A Angiotensin-converting enzyme; dicarboxy zinc metallopeptidase,
           hydrolase, hydrolase-hydrol inhibitor complex; HET: RX4
           NAG FUC BMA P6G PG4; 1.99A {Homo sapiens} PDB: 2xyd_A*
           2c6n_A* 2c6f_A*
          Length = 629

 Score = 27.9 bits (61), Expect = 1.1
 Identities = 7/44 (15%), Positives = 14/44 (31%)

Query: 5   IRFSACSATNPIWFVKTRLQLAHVQHGSQVTAMHIIRREYLTSG 48
            R   C+            ++ H+Q+  Q   + +  R     G
Sbjct: 343 FRIKQCTRVTMDQLSTVHHEMGHIQYYLQYKDLPVSLRRGANPG 386


>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
            acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
            synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
          Length = 2006

 Score = 27.7 bits (61), Expect = 1.3
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 19/88 (21%)

Query: 29   QHGSQVTAMHIIRREYLTSGI-KGFY----KGITASY-FGITETI--------IHFVIY- 73
            Q GSQ   M      Y TS   +  +         +Y F I + +        IHF    
Sbjct: 1624 Q-GSQEQGM--GMDLYKTSKAAQDVWNRADNHFKDTYGFSILDIVINNPVNLTIHFGGEK 1680

Query: 74   -EAIKAKLMAVRAHQSLDGDKKTRDFVE 100
             + I+    A+     +DG  KT    +
Sbjct: 1681 GKRIRENYSAMIFETIVDGKLKTEKIFK 1708


>4aez_A CDC20, WD repeat-containing protein SLP1; cell cycle, KEN-BOX,
           D-BOX, APC/C; 2.30A {Schizosaccharomyces pombe}
          Length = 401

 Score = 26.4 bits (59), Expect = 2.5
 Identities = 10/35 (28%), Positives = 14/35 (40%), Gaps = 9/35 (25%)

Query: 4   TIRFSACSATNPIWFVKTRLQLAHVQHGSQVTAMH 38
            I F         W   T  ++  V  GSQVT++ 
Sbjct: 285 QIHF---------WNAATGARVNTVDAGSQVTSLI 310


>1uze_A Angiotensin converting enzyme; metalloprotease, inhibitor,
           enalaprilat, zinc dependant peptidase, anti-hypertensive
           drug; HET: EAL; 1.82A {Homo sapiens} SCOP: d.92.1.5 PDB:
           1o8a_A* 1o86_A* 1uzf_A* 2oc2_A* 2ydm_A* 2iux_A* 2iul_A*
           2xy9_A* 3bkk_A* 3bkl_A* 3l3n_A*
          Length = 589

 Score = 25.9 bits (56), Expect = 4.8
 Identities = 6/26 (23%), Positives = 11/26 (42%)

Query: 5   IRFSACSATNPIWFVKTRLQLAHVQH 30
            R   C+  N    V    ++ H+Q+
Sbjct: 329 FRIKQCTTVNLEDLVVAHHEMGHIQY 354


>1ep3_A Dihydroorotate dehydrogenase B (PYRD subunit); heterotetramer,
           alpha-beta barrel, beta sandwich, FAD domain alpha/beta
           NADP domain; HET: FMN FAD; 2.10A {Lactococcus lactis}
           SCOP: c.1.4.1 PDB: 1ep2_A* 1ep1_A*
          Length = 311

 Score = 25.2 bits (56), Expect = 7.3
 Identities = 6/11 (54%), Positives = 8/11 (72%)

Query: 96  RDFVEFMMAGA 106
           +D +E  MAGA
Sbjct: 254 QDVLEMYMAGA 264


>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
           aminotransferase, csgid; 2.05A {Bacillus anthracis}
          Length = 452

 Score = 25.2 bits (56), Expect = 7.8
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 54  KGITASYFGITETIIHFVIYEAIKA 78
           KGIT++Y  ++ T +   IYEA K 
Sbjct: 284 KGITSAYLPLSATAVKREIYEAFKG 308


>3oix_A Putative dihydroorotate dehydrogenase; dihydrooro oxidase; TIM
           barrel, oxidoreductase; HET: MLY FMN; 2.40A
           {Streptococcus mutans}
          Length = 345

 Score = 24.8 bits (54), Expect = 9.7
 Identities = 5/11 (45%), Positives = 7/11 (63%)

Query: 96  RDFVEFMMAGA 106
           RD  E ++ GA
Sbjct: 288 RDAFEHILCGA 298


  Database: pdb70
    Posted date:  Sep 4, 2012  3:40 AM
  Number of letters in database: 6,701,793
  Number of sequences in database:  27,921
  
Lambda     K      H
   0.326    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0769    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,934,466
Number of extensions: 102399
Number of successful extensions: 276
Number of sequences better than 10.0: 1
Number of HSP's gapped: 267
Number of HSP's successfully gapped: 18
Length of query: 125
Length of database: 6,701,793
Length adjustment: 82
Effective length of query: 43
Effective length of database: 4,412,271
Effective search space: 189727653
Effective search space used: 189727653
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (23.3 bits)