RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14479
         (125 letters)



>d1okca_ f.42.1.1 (A:) ADP,ATP carrier protein {Cow (Bos taurus),
           heart isoform t1 [TaxId: 9913]}
          Length = 292

 Score = 40.1 bits (92), Expect = 2e-05
 Identities = 13/70 (18%), Positives = 27/70 (38%), Gaps = 3/70 (4%)

Query: 10  CSATNPIWFVKTRLQLAHVQHGSQVT---AMHIIRREYLTSGIKGFYKGITASYFGITET 66
              + P   V+ R+ +   + G+ +     +   R+     G K F+KG  ++       
Sbjct: 223 GLVSYPFDTVRRRMMMQSGRKGADIMYTGTVDCWRKIAKDEGPKAFFKGAWSNVLRGMGG 282

Query: 67  IIHFVIYEAI 76
               V+Y+ I
Sbjct: 283 AFVLVLYDEI 292



 Score = 25.8 bits (55), Expect = 1.4
 Identities = 21/116 (18%), Positives = 36/116 (31%), Gaps = 8/116 (6%)

Query: 9   ACSATNPIWFVKTRLQLAHVQHGSQVTA-----MHIIRREYLTSGIKGFYKGITASYFGI 63
           + +A  PI  VK  LQ+ H              +  + R     G   F++G       +
Sbjct: 20  SKTAVAPIERVKLLLQVQHASKQISAEKQYKGIIDCVVRIPKEQGFLSFWRGN---LANV 76

Query: 64  TETIIHFVIYEAIKAKLMAVRAHQSLDGDKKTRDFVEFMMAGAVSKTCASCIAYPH 119
                   +  A K K   +         +  R F   + +G  +   + C  YP 
Sbjct: 77  IRYFPTQALNFAFKDKYKQIFLGGVDRHKQFWRYFAGNLASGGAAGATSLCFVYPL 132


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.326    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0399    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 469,566
Number of extensions: 18548
Number of successful extensions: 60
Number of sequences better than 10.0: 1
Number of HSP's gapped: 60
Number of HSP's successfully gapped: 7
Length of query: 125
Length of database: 2,407,596
Length adjustment: 75
Effective length of query: 50
Effective length of database: 1,377,846
Effective search space: 68892300
Effective search space used: 68892300
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 48 (23.1 bits)