BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14480
(190 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 52.0 bits (123), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 32/127 (25%), Positives = 54/127 (42%), Gaps = 15/127 (11%)
Query: 79 ILKICGIIQVNAHEMP---LTEPSYIAIFDRASFIEHNCYPNLYKSFTDSG--------- 126
I I G+I N + + + IF + H+C+PN F +
Sbjct: 170 ISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMFH 229
Query: 127 ---QVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHLQTSKYFICQCERCRDPTELNTFY 183
++ LRA+ I+ G+ L++ Y D L + RR L+ YF C CE C+ + + F
Sbjct: 230 TQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLFL 289
Query: 184 DGVKCPE 190
+ P+
Sbjct: 290 AAKEDPK 296
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 IAIFDRASFIEHNCYPNLYKSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHL 160
+ ++ S + H+C PN F + +LLRA++ I G+ L+ICY D L + RR L
Sbjct: 197 VGLYPSISLLNHSCDPNCSIVF-NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL 255
Query: 161 QTSKYFICQCERCR 174
+ F C C RC+
Sbjct: 256 RDQYCFECDCFRCQ 269
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 IAIFDRASFIEHNCYPNLYKSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHL 160
+ ++ S + H+C PN F + +LLRA++ I G+ L+ICY D L + RR L
Sbjct: 195 VGLYPSISLLNHSCDPNCSIVF-NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL 253
Query: 161 QTSKYFICQCERCR 174
+ F C C RC+
Sbjct: 254 RDQYCFECDCFRCQ 267
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 IAIFDRASFIEHNCYPNLYKSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHL 160
+ ++ S + H+C PN F + +LLRA++ I G+ L+ICY D L + RR L
Sbjct: 195 VGLYPSISLLNHSCDPNCSIVF-NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL 253
Query: 161 QTSKYFICQCERCR 174
+ F C C RC+
Sbjct: 254 RDQYCFECDCFRCQ 267
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 IAIFDRASFIEHNCYPNLYKSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHL 160
+ ++ S + H+C PN F + +LLRA++ I G+ L+ICY D L + RR L
Sbjct: 196 VGLYPSISLLNHSCDPNCSIVF-NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL 254
Query: 161 QTSKYFICQCERCR 174
+ F C C RC+
Sbjct: 255 RDQYCFECDCFRCQ 268
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 50.8 bits (120), Expect = 4e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 IAIFDRASFIEHNCYPNLYKSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHL 160
+ ++ S + H+C PN F + +LLRA++ I G+ L+ICY D L + RR L
Sbjct: 231 VGLYPSISLLNHSCDPNCSIVF-NGPHLLLRAVRDIEVGEELTICYLDMLMTSEERRKQL 289
Query: 161 QTSKYFICQCERCR 174
+ F C C RC+
Sbjct: 290 RDQYCFECDCFRCQ 303
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 50.8 bits (120), Expect = 5e-07, Method: Compositional matrix adjust.
Identities = 26/74 (35%), Positives = 40/74 (54%), Gaps = 1/74 (1%)
Query: 101 IAIFDRASFIEHNCYPNLYKSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHL 160
+ ++ S + H+C PN F + +LLRA++ I G+ L+ICY D L + RR L
Sbjct: 196 VGLYPSISLLNHSCDPNCSIVF-NGPHLLLRAVRDIEVGEELTICYLDXLXTSEERRKQL 254
Query: 161 QTSKYFICQCERCR 174
+ F C C RC+
Sbjct: 255 RDQYCFECDCFRCQ 268
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 50.1 bits (118), Expect = 8e-07, Method: Compositional matrix adjust.
Identities = 41/174 (23%), Positives = 81/174 (46%), Gaps = 19/174 (10%)
Query: 12 HPSYECIIALRCLYKKSHQPQIW--DKLM---QLEAHVEEYKNSPKYENDRRNVVQXXXX 66
+PS + R L K+ P+ +KL+ + E+H++ K +N++++++Q
Sbjct: 101 NPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLD------KLDNEKKDLIQSDIA 154
Query: 67 XXXXXXXXTQE-----EILKICGIIQVNAHEMPLTEPSYI--AIFDRASFIEHNCYPNLY 119
E ++ + + N + E S++ AIF + + H+C PN+
Sbjct: 155 ALHQFYSKYLEFPDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVI 214
Query: 120 KSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHLQTSKYFICQCERC 173
++ + +RA++ I PGD + Y D L+ T +R L+ S +F C+C C
Sbjct: 215 VTYKGT-LAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECREC 267
Score = 26.6 bits (57), Expect = 9.8, Method: Compositional matrix adjust.
Identities = 20/63 (31%), Positives = 28/63 (44%), Gaps = 9/63 (14%)
Query: 130 LRAMKPIAPGDHLSICYTDPLWGTINRR-HHLQ---TSKYFICQCERCRDPTELNTFYDG 185
LRA++P GD L C T+ R HH + K + +C RC+ FY
Sbjct: 21 LRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFARKEGLSKCGRCK-----QAFYCD 75
Query: 186 VKC 188
V+C
Sbjct: 76 VEC 78
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 82/174 (47%), Gaps = 19/174 (10%)
Query: 12 HPSYECIIALRCLYKKSHQPQIW--DKLM---QLEAHVEEYKNSPKYENDRRNVVQXXXX 66
+PS + R L K+ P+ +KL+ + E+H++ K +N++++++Q
Sbjct: 101 NPSETVRLTARILAKQKIHPERTPSEKLLAVKEFESHLD------KLDNEKKDLIQSDIA 154
Query: 67 XXXXXXXX-----TQEEILKICGIIQVNAHEMPLTEPSYI--AIFDRASFIEHNCYPNLY 119
+ ++ + + N + E S++ AIF + + H+C PN+
Sbjct: 155 ALHHFYSKHLGFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVI 214
Query: 120 KSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHLQTSKYFICQCERC 173
++ + +RA++ I PG+ + Y D L+ T +R L+ S +F C+C+ C
Sbjct: 215 VTYKGT-LAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQEC 267
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 130 LRAMKPIAPGDHLSICYTDPLWGTINRR-HHLQ---TSKYFICQCERCRDPTELNTFYDG 185
LRA++P GD L C T+N R +H + T K + +C RC+ FY
Sbjct: 21 LRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCK-----QAFYCN 75
Query: 186 VKC 188
V+C
Sbjct: 76 VEC 78
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 40/174 (22%), Positives = 82/174 (47%), Gaps = 19/174 (10%)
Query: 12 HPSYECIIALRCLYKKSHQPQIW--DKLM---QLEAHVEEYKNSPKYENDRRNVVQXXXX 66
+PS + R L K+ P+ +KL+ + E+H++ K +N++++++Q
Sbjct: 101 NPSETVRLTARILAKQKIHPERTPSEKLLAVKEFESHLD------KLDNEKKDLIQSDIA 154
Query: 67 XXXXXXXXTQE-----EILKICGIIQVNAHEMPLTEPSYI--AIFDRASFIEHNCYPNLY 119
E ++ + + N + E S++ AIF + + H+C PN+
Sbjct: 155 ALHHFYSKHLEFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVI 214
Query: 120 KSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHLQTSKYFICQCERC 173
++ + +RA++ I PG+ + Y D L+ T +R L+ S +F C+C+ C
Sbjct: 215 VTYKGT-LAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQEC 267
Score = 28.1 bits (61), Expect = 3.3, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 130 LRAMKPIAPGDHLSICYTDPLWGTINRR-HHLQ---TSKYFICQCERCRDPTELNTFYDG 185
LRA++P GD L C T+N R +H + T K + +C RC+ FY
Sbjct: 21 LRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCK-----QAFYCN 75
Query: 186 VKC 188
V+C
Sbjct: 76 VEC 78
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 49.3 bits (116), Expect = 1e-06, Method: Compositional matrix adjust.
Identities = 39/174 (22%), Positives = 82/174 (47%), Gaps = 19/174 (10%)
Query: 12 HPSYECIIALRCLYKKSHQPQIW--DKLM---QLEAHVEEYKNSPKYENDRRNVVQXXXX 66
+PS + R L K+ P+ +KL+ + E+H++ K +N++++++Q
Sbjct: 101 NPSETVRLTARILAKQKIHPERTPSEKLLAVKEFESHLD------KLDNEKKDLIQSDIA 154
Query: 67 XXXXXXXX-----TQEEILKICGIIQVNAHEMPLTEPSYI--AIFDRASFIEHNCYPNLY 119
+ ++ + + N + E S++ AIF + + H+C PN+
Sbjct: 155 ALHHFYSKHLGFPDNDSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVI 214
Query: 120 KSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHLQTSKYFICQCERC 173
++ + +RA++ I PG+ + Y D L+ T +R L+ S +F C+C+ C
Sbjct: 215 VTYKGT-LAEVRAVQEIKPGEEVFTSYIDLLYPTEDRNDRLRDSYFFTCECQEC 267
Score = 28.1 bits (61), Expect = 3.4, Method: Compositional matrix adjust.
Identities = 21/63 (33%), Positives = 30/63 (47%), Gaps = 9/63 (14%)
Query: 130 LRAMKPIAPGDHLSICYTDPLWGTINRR-HHLQ---TSKYFICQCERCRDPTELNTFYDG 185
LRA++P GD L C T+N R +H + T K + +C RC+ FY
Sbjct: 21 LRALQPFQVGDLLFSCPAYAYVLTVNERGNHCEYCFTRKEGLSKCGRCK-----QAFYCN 75
Query: 186 VKC 188
V+C
Sbjct: 76 VEC 78
>pdb|3S8P|A Chain A, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
pdb|3S8P|B Chain B, Crystal Structure Of The Set Domain Of Human
Histone-Lysine N- Methyltransferase Suv420h1 In Complex
With S-Adenosyl-L-Methionine
Length = 273
Score = 38.1 bits (87), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 17/49 (34%), Positives = 26/49 (53%)
Query: 107 ASFIEHNCYPNLYKSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTIN 155
A+FI H+C PN T ++A++ I PG+ +S Y D +G N
Sbjct: 206 AAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENN 254
>pdb|3RQ4|A Chain A, Crystal Structure Of Suppressor Of Variegation 4-20
Homolog 2
Length = 247
Score = 35.8 bits (81), Expect = 0.014, Method: Compositional matrix adjust.
Identities = 15/49 (30%), Positives = 25/49 (51%)
Query: 107 ASFIEHNCYPNLYKSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTIN 155
A+FI H+C PN D ++ ++ I PGD ++ Y + +G N
Sbjct: 177 AAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEKN 225
>pdb|2W5Y|A Chain A, Binary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine.
pdb|2W5Z|A Chain A, Ternary Complex Of The Mixed Lineage Leukaemia (Mll1) Set
Domain With The Cofactor Product S-Adenosylhomocysteine
And Histone Peptide
Length = 192
Score = 30.8 bits (68), Expect = 0.44, Method: Compositional matrix adjust.
Identities = 18/53 (33%), Positives = 28/53 (52%), Gaps = 3/53 (5%)
Query: 107 ASFIEHNCYPNLYKSFTD-SGQ--VLLRAMKPIAPGDHLSICYTDPLWGTINR 156
A FI H+C PN Y + GQ +++ AM+ I G+ L+ Y P+ N+
Sbjct: 125 ARFINHSCEPNCYSRVINIDGQKHIVIFAMRKIYRGEELTYDYKFPIEDASNK 177
>pdb|2O8J|A Chain A, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|B Chain B, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|C Chain C, Human Euchromatic Histone Methyltransferase 2
pdb|2O8J|D Chain D, Human Euchromatic Histone Methyltransferase 2
Length = 281
Score = 29.3 bits (64), Expect = 1.4, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 17/81 (20%)
Query: 107 ASFIEHNCYPNL--YKSFT-----DSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHH 159
+ FI H C PN+ + F ++ + + I G+ L Y D W
Sbjct: 196 SRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDI------ 249
Query: 160 LQTSKYFICQC--ERCRDPTE 178
SKYF CQC E+C+ E
Sbjct: 250 --KSKYFTCQCGSEKCKHSAE 268
>pdb|3K5K|A Chain A, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3K5K|B Chain B, Discovery Of A 2,4-Diamino-7-Aminoalkoxy-Quinazoline As A
Potent Inhibitor Of Histone Lysine Methyltransferase,
G9a
pdb|3RJW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
pdb|3RJW|B Chain B, Crystal Structure Of Histone Lysine Methyltransferase G9a
With An Inhibitor
Length = 283
Score = 29.3 bits (64), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 17/81 (20%)
Query: 107 ASFIEHNCYPNL--YKSFT-----DSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHH 159
+ FI H C PN+ + F ++ + + I G+ L Y D W
Sbjct: 198 SRFINHLCDPNIIPVRVFMLHQDLRFPRIAFFSSRDIRTGEELGFDYGDRFWDI------ 251
Query: 160 LQTSKYFICQC--ERCRDPTE 178
SKYF CQC E+C+ E
Sbjct: 252 --KSKYFTCQCGSEKCKHSAE 270
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.137 0.440
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,764,961
Number of Sequences: 62578
Number of extensions: 207460
Number of successful extensions: 359
Number of sequences better than 100.0: 22
Number of HSP's better than 100.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 336
Number of HSP's gapped (non-prelim): 26
length of query: 190
length of database: 14,973,337
effective HSP length: 93
effective length of query: 97
effective length of database: 9,153,583
effective search space: 887897551
effective search space used: 887897551
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 48 (23.1 bits)