RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14480
(190 letters)
>3qww_A SET and MYND domain-containing protein 2; methyltransferase, HSP90,
transferase-transferase inhibitor; HET: SFG; 1.80A {Mus
musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A* 3s7f_A* 3s7j_A*
3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 129 bits (324), Expect = 6e-36
Identities = 37/188 (19%), Positives = 80/188 (42%), Gaps = 4/188 (2%)
Query: 4 KISNFTTPHPSYECIIALRCLYKKSHQPQIWDKLMQLEAHVEEYKNSPKYENDRRNVVQF 63
+ N + I+A + ++ + + + + E+H+++ N K + + ++
Sbjct: 98 ENWNPSETVRLTARILAKQKIHPERTPSEKLLAVREFESHLDKLDNE-KKDLIQSDIAAL 156
Query: 64 LLNFFKLNEEFTQEEILKICGIIQVNAHEMPLTEPSYI--AIFDRASFIEHNCYPNLYKS 121
+ K E ++ + + N + E S++ AIF + + H+C PN+ +
Sbjct: 157 HQFYSKYLEFPDHSSLVVLFAQVNCNGFTIEDEELSHLGSAIFPDVALMNHSCCPNVIVT 216
Query: 122 FTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHLQTSKYFICQCERCRDPTELNT 181
+ +RA++ I PGD + Y D L+ T +R L+ S +F C+C C +
Sbjct: 217 Y-KGTLAEVRAVQEIHPGDEVFTSYIDLLYPTEDRNDRLRDSYFFTCECRECTTKDKDKA 275
Query: 182 FYDGVKCP 189
+ K
Sbjct: 276 KVEVRKLS 283
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 121 bits (304), Expect = 3e-33
Identities = 32/183 (17%), Positives = 67/183 (36%), Gaps = 6/183 (3%)
Query: 12 HPSYECIIALRCLYKKSHQPQIWDKLMQLEAHVEEYKNSPK--YENDRRNVVQFLLNFFK 69
+ + + + + LE+++ + K F+ +
Sbjct: 102 SVRLLGRVVFKLMDGAPSESEKLYSFYDLESNINKLTEDRKEGLRQLVMTFQHFMREEIQ 161
Query: 70 LNEEF-TQEEILKICGIIQVNAHEM--PLTEPSYIAIFDRASFIEHNCYPNLYKSFTDSG 126
+ ++ + + N+ + + + ++ S + H+C PN F +
Sbjct: 162 DASQLPPAFDLFEAFAKVICNSFTICNAEMQEVGVGLYPSISLLNHSCDPNCSIVF-NGP 220
Query: 127 QVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHLQTSKYFICQCERCRDPTELNTFYDGV 186
+LLRA++ I G+ L+ICY D L + RR L+ F C C RC+ + G
Sbjct: 221 HLLLRAVRDIEVGEELTICYLDMLMTSEERRKQLRDQYCFECDCFRCQTQDKDADMLTGD 280
Query: 187 KCP 189
+
Sbjct: 281 EQV 283
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 120 bits (302), Expect = 1e-32
Identities = 42/188 (22%), Positives = 76/188 (40%), Gaps = 16/188 (8%)
Query: 18 IIALRCLYKKSHQPQIWDKLMQLEAHVEEYKNSPKYENDRRNVVQFLLNFFKLNEEFTQE 77
I+ + L+ HVE + + + R +V FL + +++F+ +
Sbjct: 110 IMWRVEREGTGLTEGCLVSVDDLQNHVEHFGE-EEQKELRVDVDTFLQYWPPQSQQFSMQ 168
Query: 78 EILKICGIIQVNAHEMPLTE---PSYIAIFDRASFIEHNCYPNLYKSFTDSG-------- 126
I I G+I N + + IF + H+C+PN F +
Sbjct: 169 YISHIFGVINCNGFTLSDQRGLQAVGVGIFPNLGLVNHDCWPNCTVIFNNGNHEAVKSMF 228
Query: 127 ----QVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHLQTSKYFICQCERCRDPTELNTF 182
++ LRA+ I+ G+ L++ Y D L + RR L+ YF C CE C+ + + F
Sbjct: 229 HTQMRIELRALGKISEGEELTVSYIDFLHLSEERRRQLKKQYYFDCSCEHCQKGLKDDLF 288
Query: 183 YDGVKCPE 190
+ P+
Sbjct: 289 LAAKEDPK 296
>3rq4_A Histone-lysine N-methyltransferase SUV420H2; suppressor,
variegation 4-20 homolog 2, structural genomics,
structural genomics consortium, SGC; HET: SAM; 1.80A
{Homo sapiens}
Length = 247
Score = 44.6 bits (105), Expect = 4e-06
Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 10/69 (14%)
Query: 107 ASFIEHNCYPNLYKSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHLQTSKYF 166
A+FI H+C PN D ++ ++ I PGD ++ Y + +G N
Sbjct: 177 AAFINHDCKPNCKFVPADGNAACVKVLRDIEPGDEVTCFYGEGFFGEKNEH--------- 227
Query: 167 ICQCERCRD 175
C+C C
Sbjct: 228 -CECHTCER 235
>3s8p_A Histone-lysine N-methyltransferase SUV420H1; SET domain, histone
methyltransferase, transcription regulat histone lysine,
SAM, methylation, nucleus; HET: MSE SAM; 1.85A {Homo
sapiens}
Length = 273
Score = 39.3 bits (91), Expect = 3e-04
Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 10/68 (14%)
Query: 107 ASFIEHNCYPNLYKSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHHLQTSKYF 166
A+FI H+C PN T ++A++ I PG+ +S Y D +G N
Sbjct: 206 AAFINHDCRPNCKFVSTGRDTACVKALRDIEPGEEISCYYGDGFFGENNEF--------- 256
Query: 167 ICQCERCR 174
C+C C
Sbjct: 257 -CECYTCE 263
>1n3j_A A612L, histone H3 lysine methyltransferase; beta barrel, homodimer;
NMR {Paramecium bursaria chlorella virus 1} SCOP:
b.85.7.2 PDB: 2g46_A* 3kma_A 3kmj_A 3kmt_A*
Length = 119
Score = 37.7 bits (88), Expect = 4e-04
Identities = 14/52 (26%), Positives = 24/52 (46%), Gaps = 1/52 (1%)
Query: 107 ASFIEHNCYPNLYKSFTDSGQ-VLLRAMKPIAPGDHLSICYTDPLWGTINRR 157
+ H+ PN T + + + +KPIA G+ ++I Y D W + R
Sbjct: 65 GAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDDYWLSRPRL 116
>3hna_A Histone-lysine N-methyltransferase, H3 lysine-9 specific 5; EHMT1,
structural genomics, SGC, structural genomics
consortium, alternative splicing, ANK repeat; HET: MLZ
SAH; 1.50A {Homo sapiens} PDB: 2rfi_A* 2igq_A* 3mo0_A*
3mo2_A* 3mo5_A* 3sw9_A* 3swc_A* 3fpd_A* 3k5k_A* 3nni_A*
3rjw_A* 2o8j_A*
Length = 287
Score = 35.7 bits (82), Expect = 0.005
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 17/77 (22%)
Query: 107 ASFIEHNCYPNLY--KSFTDSGQ-----VLLRAMKPIAPGDHLSICYTDPLWGTINRRHH 159
+ FI H+C PNL + F + + + I G+ L Y + W
Sbjct: 217 SRFINHHCEPNLVPVRVFMAHQDLRFPRIAFFSTRLIEAGEQLGFDYGERFWDI------ 270
Query: 160 LQTSKYFICQC--ERCR 174
K F C+C +CR
Sbjct: 271 --KGKLFSCRCGSPKCR 285
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine
methyltransferase, transferase, network VIA methyllysine
signaling; HET: SAM; 2.09A {Homo sapiens} PDB: 3rc0_A*
Length = 449
Score = 35.3 bits (80), Expect = 0.008
Identities = 18/155 (11%), Positives = 50/155 (32%), Gaps = 18/155 (11%)
Query: 31 PQIWDKLMQLEAHVEEYKNSPKYENDRRNVVQFLLNFFKLNEEFTQEEILKICGIIQVNA 90
+ + + + A++ Y++ ++ + F L + E ++ ++ +
Sbjct: 147 TGVPEAVEKDLANIRSE-----YQSIVLPFMEAHPDLFSL-RVRSLELYHQLVALVMAYS 200
Query: 91 HEMPLTEPSYIAIFDR------ASFIEHNCYPNLYKSFTDSGQVLLRAMKPIAPGDHLSI 144
+ PL E + A + H N ++ + + A +PI G +
Sbjct: 201 FQEPLEEEEDEKEPNSPVMVPAADILNHLANHNANLEYSA-NCLRMVATQPIPKGHEIFN 259
Query: 145 CYTDPLWGTINRRHHLQTSKYFICQCERCRDPTEL 179
Y G + + + + D ++
Sbjct: 260 TY-----GQMANWQLIHMYGFVEPYPDNTDDTADI 289
>1ml9_A Histone H3 methyltransferase DIM-5; adoMet-dependent
methyltransferase histone H3 lysine- 9 methylation;
1.98A {Neurospora crassa} SCOP: b.85.7.1 PDB: 1peg_A*
Length = 302
Score = 34.2 bits (78), Expect = 0.016
Identities = 21/78 (26%), Positives = 31/78 (39%), Gaps = 10/78 (12%)
Query: 107 ASFIEHNCYPNL--YKSFTDSGQVLLR-----AMKPIAPGDHLSICYTDPLWGTINRRHH 159
FI H+C PN+ + D + A+K I G L+ Y + L G + H
Sbjct: 221 TRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHD 280
Query: 160 LQ-TSKYFICQC--ERCR 174
S+ C C +CR
Sbjct: 281 PSKISEMTKCLCGTAKCR 298
>3ope_A Probable histone-lysine N-methyltransferase ASH1L; SET, nucleus;
HET: SAM; 2.90A {Homo sapiens}
Length = 222
Score = 31.5 bits (72), Expect = 0.12
Identities = 18/71 (25%), Positives = 32/71 (45%), Gaps = 14/71 (19%)
Query: 109 FIEHNCYPNLY-KSFTDSGQ--VLLRAMKPIAPGDHLSICYTDPLWGTINRRHHLQTSKY 165
FI H+C PN + ++ +G + L A+K + G L+ Y + +
Sbjct: 149 FINHSCDPNCEMQKWSVNGVYRIGLYALKDMPAGTELTYDYNFHSFNVEKQ--------- 199
Query: 166 FICQC--ERCR 174
+C+C E+CR
Sbjct: 200 QLCKCGFEKCR 210
>2zxe_A Na, K-ATPase alpha subunit; membrane protein, ION pump, ATPase, K+
binding, haloacid dehydrogenease superfamily, phosphate
analogue; HET: CLR NAG NDG; 2.40A {Squalus acanthias}
PDB: 3a3y_A* 3b8e_A* 3kdp_A* 3n2f_A* 3n23_A* 1mo7_A
1mo8_A* 1q3i_A
Length = 1028
Score = 31.8 bits (73), Expect = 0.13
Identities = 14/66 (21%), Positives = 20/66 (30%), Gaps = 13/66 (19%)
Query: 77 EEILKICGIIQVNAHEMPLTEPSYIAIFDRASFIEHNCYPNLYKSFTDSGQ-VLLRAMKP 135
E IL C I +N E PL E + +F G+ VL
Sbjct: 517 ERILDRCSTILLNGAEEPLKED------MKEAFQNAY------LELGGLGERVLGFCHFA 564
Query: 136 IAPGDH 141
+ +
Sbjct: 565 LPEDKY 570
>3ixz_A Potassium-transporting ATPase alpha; ION pump, H+, K+-ATPase,
P-type ATPase, membrane protein, hydrolase, aluminium
fluoride, ATP-binding; 6.50A {Sus scrofa} PDB: 2xzb_A
1iwc_A 1iwf_A
Length = 1034
Score = 31.5 bits (72), Expect = 0.19
Identities = 15/66 (22%), Positives = 24/66 (36%), Gaps = 13/66 (19%)
Query: 77 EEILKICGIIQVNAHEMPLTEPSYIAIFDRASFIEHNCYPNLYKSFTDSGQ-VLLRAMKP 135
E +L+ C I + E+PL E R +F S G+ VL
Sbjct: 522 ERVLERCSSILIKGQELPLDEQ------WREAFQTAY------LSLGGLGERVLGFCQLY 569
Query: 136 IAPGDH 141
++ D+
Sbjct: 570 LSEKDY 575
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET: SAM;
2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3 PDB:
2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 31.0 bits (69), Expect = 0.21
Identities = 18/118 (15%), Positives = 33/118 (27%), Gaps = 12/118 (10%)
Query: 39 QLEAHVEEYKNSPKYENDRRNVVQFLLNFFKLNEEFTQEEILKICGIIQVNAHEMPLTEP 98
QL K K E + L N + T ++ GI + +
Sbjct: 124 QLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGI--LRSRAFSRLRN 181
Query: 99 SYIAIFDRASFIEHNCYPNLYKS----------FTDSGQVLLRAMKPIAPGDHLSICY 146
+ + A I H+ F+ L++ + G+ + I Y
Sbjct: 182 ENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKAGEQVYIQY 239
>1mvh_A Cryptic LOCI regulator 4; lysine methyltransferase, CLR4,
SET-domain; 2.30A {Schizosaccharomyces pombe} SCOP:
b.85.7.1 PDB: 1mvx_A
Length = 299
Score = 30.6 bits (69), Expect = 0.27
Identities = 17/81 (20%), Positives = 31/81 (38%), Gaps = 13/81 (16%)
Query: 107 ASFIEHNCYPNLY--KSFTDSGQVLLR-----AMKPIAPGDHLSICYTDPLWGTINRRHH 159
+ F H+C PN+ + + G + A+K I P + L+ Y + +
Sbjct: 214 SRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGAKDFSPVQSQK 273
Query: 160 LQTSKY----FICQC--ERCR 174
Q ++ C+C CR
Sbjct: 274 SQQNRISKLRRQCKCGSANCR 294
>3bo5_A Histone-lysine N-methyltransferase setmar; SET domain, chromati
regulator, DNA damage, DNA repair, DNA-binding, nucleus,
ST genomics; HET: SAH; 1.59A {Homo sapiens}
Length = 290
Score = 30.6 bits (69), Expect = 0.28
Identities = 19/77 (24%), Positives = 29/77 (37%), Gaps = 9/77 (11%)
Query: 107 ASFIEHNCYPNLY--KSFTDSG--QVLLRAMKPIAPGDHLSICYTDPLW---GTINRRHH 159
F+ H+C PNL DS ++ L A K I P + LS Y+ + ++
Sbjct: 206 GRFLNHSCEPNLLMIPVRIDSMVPKLALFAAKDIVPEEELSYDYSGRYLNLTVSASKERL 265
Query: 160 LQTSKYFICQC--ERCR 174
C C + C
Sbjct: 266 DHGKLRKPCYCGAKSCT 282
>2r3a_A Histone-lysine N-methyltransferase SUV39H2; histone H3-K9
methyltransferase 2, H3 lysine-9 specific 2, alternative
splicing, cell cycle; HET: SAM; 2.00A {Homo sapiens}
Length = 300
Score = 30.3 bits (68), Expect = 0.33
Identities = 18/81 (22%), Positives = 30/81 (37%), Gaps = 13/81 (16%)
Query: 107 ASFIEHNCYPNL--YKSFTDSGQVLLR-----AMKPIAPGDHLSICYTDPLWG----TIN 155
+ F+ H+C PNL + F D+ L + + I G+ L+ Y G
Sbjct: 216 SHFVNHSCDPNLQVFNVFIDNLDTRLPRIALFSTRTINAGEELTFDYQMKGSGDISSDSI 275
Query: 156 RRHHLQTSKYFICQC--ERCR 174
+ +C+C CR
Sbjct: 276 DHSPAKKRVRTVCKCGAVTCR 296
>3i16_A Aluminum resistance protein; YP_878183.1, carbon-sulfur lyase
involved in aluminum resist structural genomics; HET:
MSE TLA PLP; 2.00A {Clostridium novyi} PDB: 3gwp_A*
Length = 427
Score = 30.5 bits (69), Expect = 0.35
Identities = 15/72 (20%), Positives = 33/72 (45%), Gaps = 16/72 (22%)
Query: 36 KLMQLEAHVEE---YKNSPKYENDRRNVVQFLLNFFKLNEEFTQEEILKICGIIQ----V 88
K L + + E ++ PKY+ R +++Q K N++ +++++ C IQ +
Sbjct: 306 KGAILCSRIMELAGFEVMPKYDEKRSDIIQ----SIKFNDK---DKLIEFCKGIQTGSPI 358
Query: 89 NAHEMPLTEPSY 100
++ EP
Sbjct: 359 DSFVSC--EPWD 368
>3nw0_B Melanoma-associated antigen G1; E3 ligase, Zn, metal binding
protein; 2.92A {Homo sapiens}
Length = 217
Score = 29.4 bits (66), Expect = 0.61
Identities = 13/51 (25%), Positives = 20/51 (39%), Gaps = 9/51 (17%)
Query: 58 RNVVQFLLNFFKLNEEFTQEEILKICGIIQVNAHEMPLTEPSYIAIFDRAS 108
+VQFLL + + +ILK +I P +F RA+
Sbjct: 13 SELVQFLLIKDQKKIPIKRADILKH--VIGDYKDIFPD-------LFKRAA 54
>2wa0_A Melanoma-associated antigen 4; immune system, multiple anomalous
dispersion, cancer/testis 1.4, melanoma antigen family A
4, CT1.4, MAGE-41; 2.30A {Homo sapiens}
Length = 240
Score = 28.6 bits (64), Expect = 0.98
Identities = 13/50 (26%), Positives = 23/50 (46%), Gaps = 9/50 (18%)
Query: 59 NVVQFLLNFFKLNEEFTQEEILKICGIIQVNAHEMPLTEPSYIAIFDRAS 108
+ FLL ++ E T+ E+L+ +I+ P+ IF +AS
Sbjct: 39 ELAHFLLRKYRAKELVTKAEMLER--VIKNYKRCFPV-------IFGKAS 79
>1e2k_A Thymidine kinase; transferase, antiviral drug, enzyme-prodrug gene
therapy, sugar ring pucker; HET: TMC; 1.7A {Herpes
simplex virus} SCOP: c.37.1.1 PDB: 1e2i_A* 1e2h_A*
1e2m_A* 1e2n_A* 1e2p_A* 1ki2_A* 1ki3_A* 1ki4_A* 1ki6_B*
1ki7_A* 1ki8_A* 3rdp_A* 2ki5_A* 1kim_A* 1qhi_A* 1p7c_A*
1vtk_A* 2vtk_A* 3vtk_A* 3f0t_A* ...
Length = 331
Score = 29.0 bits (64), Expect = 0.99
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 86 IQVNAHEMPLTEPSYIAIFDRASFIEHNCYP-NLYKSFTDSGQ---VLLRAMKPIAPGDH 141
I A P+ IFDR CYP Y + + Q + + P PG +
Sbjct: 98 IGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTN 157
Query: 142 LSICYTDP 149
+ +
Sbjct: 158 IVLGALPE 165
>1of1_A Thymidine kinase; transferase, antiviral drug, enzyme- prodrug
gene, DNA synthesis, ATP-binding; HET: SCT; 1.95A
{Herpes simplex virus} SCOP: c.37.1.1
Length = 376
Score = 29.1 bits (64), Expect = 1.0
Identities = 15/68 (22%), Positives = 23/68 (33%), Gaps = 4/68 (5%)
Query: 86 IQVNAHEMPLTEPSYIAIFDRASFIEHNCYP-NLYKSFTDSGQ---VLLRAMKPIAPGDH 141
I A P+ IFDR CYP Y + + Q + + P PG +
Sbjct: 143 IGGEAGSSHAPPPALTLIFDRHPIAALLCYPAARYLMGSMTPQAVLAFVALIPPTLPGTN 202
Query: 142 LSICYTDP 149
+ +
Sbjct: 203 IVLGALPE 210
>2f69_A Histone-lysine N-methyltransferase, H3 lysine-4 specific SET7; SET
domain, protein lysine methyltransferase, enzyme-
peptide-adohcy complex; HET: MLZ SAH; 1.30A {Homo
sapiens} SCOP: b.76.2.1 b.85.7.1 PDB: 3m53_A* 3m55_A*
3m54_A* 3m56_A* 3m58_A* 3m57_A* 3m59_A* 3m5a_A* 1xqh_A*
4e47_A* 1n6a_A* 1o9s_A* 3cbp_A* 3cbm_A* 3cbo_A* 3os5_A*
Length = 261
Score = 28.5 bits (63), Expect = 1.1
Identities = 6/44 (13%), Positives = 15/44 (34%), Gaps = 4/44 (9%)
Query: 107 ASFIEHNCYPNLYKSFTDSGQV----LLRAMKPIAPGDHLSICY 146
H+ PN + +R ++ + + L++ Y
Sbjct: 187 GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAY 230
>3ooi_A Histone-lysine N-methyltransferase, H3 lysine-36 lysine-20
specific; SET domain, S-adenosyl-L methionine; HET: SAM;
1.75A {Homo sapiens}
Length = 232
Score = 28.5 bits (64), Expect = 1.1
Identities = 17/71 (23%), Positives = 27/71 (38%), Gaps = 15/71 (21%)
Query: 109 FIEHNCYPNLY-KSFTDSGQ--VLLRAMKPIAPGDHLSICYTDPLWGTINRRHHLQTSKY 165
F+ H C PN + ++ +G V L A+ I G L+ Y G +
Sbjct: 168 FMNHCCQPNCETQKWSVNGDTRVGLFALSDIKAGTELTFNYNLECLG----------NGK 217
Query: 166 FICQC--ERCR 174
+C+C C
Sbjct: 218 TVCKCGAPNCS 228
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 28.7 bits (63), Expect = 1.6
Identities = 16/61 (26%), Positives = 26/61 (42%), Gaps = 15/61 (24%)
Query: 33 IWDKLMQLEAHVEEY--KNSPKYENDRRNVVQFLLNFFKLNEEFTQEEIL---KICGIIQ 87
I + L QL+ + + Y N PKYE ++ FL EE L K +++
Sbjct: 520 ILNTLQQLKFY-KPYICDNDPKYERLVNAILDFLPKI---------EENLICSKYTDLLR 569
Query: 88 V 88
+
Sbjct: 570 I 570
Score = 27.5 bits (60), Expect = 3.0
Identities = 19/188 (10%), Positives = 51/188 (27%), Gaps = 49/188 (26%)
Query: 38 MQLEAHVEEYKNSPKYENDRRNVVQFLLNFFKLNEEFTQ-EEILKICGIIQVNAHEMPLT 96
M E +Y+ ++++ + F N + +++ K I+ + +
Sbjct: 7 MDFETGEHQYQY--------KDILSVFEDAFVDNFDCKDVQDMPK--SILSKEEIDHIIM 56
Query: 97 EPSYIAIFDRASFIEHNCYPNLYKSFTDSG-----QVLLRAMK--PIAPGDHLS--ICYT 147
++ R + + + + F + + L+ +K P I
Sbjct: 57 SKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKTEQRQPSMMTRMYIEQR 116
Query: 148 DPLWGT--------INRRHH----------LQTSKYFI------C--QC---ERCRDPTE 178
D L+ ++R L+ +K + + C
Sbjct: 117 DRLYNDNQVFAKYNVSRLQPYLKLRQALLELRPAKNVLIDGVLGSGKTWVALDVCLSYKV 176
Query: 179 LNTFYDGV 186
+
Sbjct: 177 QCKMDFKI 184
>3gwi_A Magnesium-transporting ATPase, P-type 1; P-type ATPase, nucleotide
binding, ATP binding, MGTA, membra protein, cell inner
membrane; 1.60A {Escherichia coli}
Length = 170
Score = 27.2 bits (61), Expect = 2.7
Identities = 11/65 (16%), Positives = 21/65 (32%), Gaps = 13/65 (20%)
Query: 77 EEILKICGIIQVNAHEMPLTEPSYIAIFDRASFIEHNCYPNLYKSFTDSGQ-VLLRAMKP 135
+EIL +C ++ N +PL + + G V+ A K
Sbjct: 91 QEILNVCSQVRHNGEIVPLDDI------MLRKIKRVT------DTLNRQGLRVVAVATKY 138
Query: 136 IAPGD 140
+ +
Sbjct: 139 LPARE 143
>3ttc_A HYPF, transcriptional regulatory protein; Zn finger, nucleotide
binding, hydrogenase maturation factor transferase; HET:
ADP; 1.86A {Escherichia coli} PDB: 3tsp_A* 3tsu_A*
3ttf_A* 3ttd_A 3tsq_A
Length = 657
Score = 27.8 bits (62), Expect = 2.9
Identities = 9/23 (39%), Positives = 10/23 (43%), Gaps = 4/23 (17%)
Query: 146 YTDPLWGTINRRHHLQTSKYFIC 168
Y DPL +RR H Q C
Sbjct: 77 YRDPL----DRRFHAQPVACPEC 95
>1osn_A Thymidine kinase, VZV-TK; chickenpox, BVDU-MP, transferase; HET:
BVP ADP; 3.20A {Human herpesvirus 3} SCOP: c.37.1.1
Length = 341
Score = 27.5 bits (60), Expect = 3.0
Identities = 15/80 (18%), Positives = 23/80 (28%), Gaps = 6/80 (7%)
Query: 75 TQEEILKICGIIQVNAHEMPLTEPSYIAIFDRASFIEHNCYP-NLYK----SFTDSGQVL 129
+ + EP I + DR C+P + Y S L
Sbjct: 99 IMHAKISALMDTSTSDLVQVNKEPYKIMLSDRHPIASTICFPLSRYLVGDMSPAAL-PGL 157
Query: 130 LRAMKPIAPGDHLSICYTDP 149
L + PG +L +C
Sbjct: 158 LFTLPAEPPGTNLVVCTVSL 177
>3ar4_A Sarcoplasmic/endoplasmic reticulum calcium ATPase; P-type ATPase,
hydrolase, calcium transport, calcium binding binding;
HET: ATP TG1 PTY; 2.15A {Oryctolagus cuniculus} PDB:
2ear_A* 2eas_A* 2eat_A* 2eau_A* 2dqs_A* 2zbe_A 2zbf_A*
2zbg_A* 3ar2_A* 2zbd_A* 3ar3_A* 3ar5_A* 3ar6_A* 3ar7_A*
3ar8_A* 3ar9_A* 3n5k_A* 1kju_A 1iwo_A 1t5s_A* ...
Length = 995
Score = 27.6 bits (62), Expect = 3.5
Identities = 10/66 (15%), Positives = 20/66 (30%), Gaps = 15/66 (22%)
Query: 77 EEILKICGIIQVNAHEMPLTEPSYIAIFDRASFIEHNCYPNLYKSFTDSGQ---VLLRAM 133
E ++ C ++V +P+T P + + K + L A
Sbjct: 520 EGVIDRCNYVRVGTTRVPMTGP------VKEKILSVI------KEWGTGRDTLRCLALAT 567
Query: 134 KPIAPG 139
+ P
Sbjct: 568 RDTPPK 573
>2qpw_A PR domain zinc finger protein 2; methyltransferase, activator,
alternative initiation, alternative splicing,
DNA-binding, metal-binding, nucleus; 1.79A {Homo
sapiens} PDB: 2jv0_A*
Length = 149
Score = 25.8 bits (56), Expect = 7.6
Identities = 9/45 (20%), Positives = 17/45 (37%), Gaps = 2/45 (4%)
Query: 106 RASFIEHNCYPNLY--KSFTDSGQVLLRAMKPIAPGDHLSICYTD 148
++ C + + + +KPIAPG+ L + Y
Sbjct: 99 WLRYVNWACSGEEQNLFPLEINRAIYYKTLKPIAPGEELLVWYNG 143
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.323 0.138 0.443
Gapped
Lambda K H
0.267 0.0600 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 2,934,887
Number of extensions: 160428
Number of successful extensions: 396
Number of sequences better than 10.0: 1
Number of HSP's gapped: 384
Number of HSP's successfully gapped: 46
Length of query: 190
Length of database: 6,701,793
Length adjustment: 88
Effective length of query: 102
Effective length of database: 4,244,745
Effective search space: 432963990
Effective search space used: 432963990
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 54 (24.9 bits)