RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14480
         (190 letters)



>d2g46a1 b.85.7.2 (A:1-119) Viral histone H3 Lysine 27
           Methyltransferase {Paramecium bursaria chlorella virus
           1, PBCV-1 [TaxId: 10506]}
          Length = 119

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 14/68 (20%), Positives = 26/68 (38%), Gaps = 1/68 (1%)

Query: 91  HEMPLTEPSYIAIFDRASFIEHNCYPNLYKSFTDSG-QVLLRAMKPIAPGDHLSICYTDP 149
             +   +          +   H+  PN     T    ++ +  +KPIA G+ ++I Y D 
Sbjct: 49  DYLFSRKNMSAMALGFGAIFNHSKDPNARHELTAGLKRMRIFTIKPIAIGEEITISYGDD 108

Query: 150 LWGTINRR 157
            W +  R 
Sbjct: 109 YWLSRPRL 116


>d1ml9a_ b.85.7.1 (A:) Dim-5 {Fungus (Neurospora crassa) [TaxId:
           5141]}
          Length = 284

 Score = 33.8 bits (76), Expect = 0.009
 Identities = 19/72 (26%), Positives = 29/72 (40%), Gaps = 8/72 (11%)

Query: 107 ASFIEHNCYPNLY-------KSFTDSGQVLLRAMKPIAPGDHLSICYTDPLWGTINRRHH 159
             FI H+C PN+         +      + L A+K I  G  L+  Y + L G  +  H 
Sbjct: 213 TRFINHSCDPNMAIFARVGDHADKHIHDLALFAIKDIPKGTELTFDYVNGLTGLESDAHD 272

Query: 160 -LQTSKYFICQC 170
             + S+   C C
Sbjct: 273 PSKISEMTKCLC 284


>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
           pea (Pisum sativum) [TaxId: 3888]}
          Length = 261

 Score = 32.3 bits (72), Expect = 0.024
 Identities = 15/128 (11%), Positives = 37/128 (28%), Gaps = 14/128 (10%)

Query: 31  PQIWDKLMQLEAHVEEYKNSPKYENDRRNVVQFLLNFFKL--NEEFTQEEILKICGIIQV 88
            +   +L   +            +N+   + Q ++   K    +  T ++     GI  +
Sbjct: 113 EEELQELQGSQLLKTTVSVKEYVKNECLKLEQEIILPNKRLFPDPVTLDDFFWAFGI--L 170

Query: 89  NAHEMPLTEPSYIAIFDRASFIEHNCYPNLY----------KSFTDSGQVLLRAMKPIAP 138
            +          + +   A  I H+                  F+      L++   +  
Sbjct: 171 RSRAFSRLRNENLVVVPMADLINHSAGVTTEDHAYEVKGAAGLFSWDYLFSLKSPLSVKA 230

Query: 139 GDHLSICY 146
           G+ + I Y
Sbjct: 231 GEQVYIQY 238


>d2f69a2 b.85.7.1 (A:194-364) Histone H3 K4-specific
           methyltransferase SET7/9 catalytic domain {Human (Homo
           sapiens) [TaxId: 9606]}
          Length = 171

 Score = 31.3 bits (70), Expect = 0.046
 Identities = 6/55 (10%), Positives = 15/55 (27%), Gaps = 4/55 (7%)

Query: 107 ASFIEHNCYPNLYKSFTDSGQ----VLLRAMKPIAPGDHLSICYTDPLWGTINRR 157
                H+  PN         +      +R ++ +   + L++ Y           
Sbjct: 99  GHKANHSFTPNCIYDMFVHPRFGPIKCIRTLRAVEADEELTVAYGYDHSPPGKSG 153


>d1mvha_ b.85.7.1 (A:) SET domain of Clr4 {Fission yeast
           (Schizosaccharomyces pombe) [TaxId: 4896]}
          Length = 269

 Score = 28.2 bits (62), Expect = 0.54
 Identities = 12/50 (24%), Positives = 19/50 (38%), Gaps = 7/50 (14%)

Query: 107 ASFIEHNCYPNLY-------KSFTDSGQVLLRAMKPIAPGDHLSICYTDP 149
           + F  H+C PN+          F     +   A+K I P + L+  Y   
Sbjct: 213 SRFFNHSCSPNIAIYSAVRNHGFRTIYDLAFFAIKDIQPLEELTFDYAGA 262


>d1ryba_ c.56.3.1 (A:) Chloroplast group II intron splicing factor
           Crs2 {Maize (Zea mays) [TaxId: 4577]}
          Length = 191

 Score = 25.8 bits (56), Expect = 2.6
 Identities = 13/124 (10%), Positives = 29/124 (23%), Gaps = 9/124 (7%)

Query: 51  PKYENDRRNVVQFLLNFF--KLNEEFTQEEILKICGIIQVNAHEMPLTEPSYIAIFDRAS 108
            KY   R NV   +++    +        +   + GI  +    + + +P     +   +
Sbjct: 14  NKYYGTRHNVGFEMVDRIAAEEGITMNTIQSKSLLGIGSIGEVPVLVVKPQSYMNYSGEA 73

Query: 109 FIEHNCY----PNLYKSFTDSGQVLLRAMKPIAPG---DHLSICYTDPLWGTINRRHHLQ 161
                 Y            D   +    ++    G    H  +               L 
Sbjct: 74  IGPLAAYYQVPLRHILLIYDDTSLPNGVLRLQKKGGHGRHNGLQNVIEHLDGRREFPRLS 133

Query: 162 TSKY 165
               
Sbjct: 134 IGIG 137


>d2vgla_ a.118.1.10 (A:) Adaptin alpha C subunit N-terminal fragment
           {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 584

 Score = 25.5 bits (55), Expect = 4.6
 Identities = 9/39 (23%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 52  KYENDRRNVVQFLLNFFKLNEEFTQEEILK-ICGIIQVN 89
           KY  D    V  +LN  ++  ++  EE+   +  I+   
Sbjct: 426 KYAVDYTWYVDTILNLIRIAGDYVSEEVWYRVIQIVINR 464


>d1n4ka1 a.118.22.1 (A:436-602) IP3 receptor type 1 binding core,
          domain 2 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 167

 Score = 24.7 bits (54), Expect = 6.4
 Identities = 10/56 (17%), Positives = 25/56 (44%), Gaps = 3/56 (5%)

Query: 39 QLEAHVEEYKNSPKYENDRRNVVQFL--LNFFKLNEEFTQEEILKICGIIQVNAHE 92
           L +   + +     +N+RR+V + L  L +F      + +++L++    + N   
Sbjct: 17 VLGSIAGKLEKGTITQNERRSVTKLLEDLVYFVTGGTNSGQDVLEV-VFSKPNRER 71


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.323    0.138    0.443 

Gapped
Lambda     K      H
   0.267   0.0499    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 752,361
Number of extensions: 34496
Number of successful extensions: 108
Number of sequences better than 10.0: 1
Number of HSP's gapped: 106
Number of HSP's successfully gapped: 10
Length of query: 190
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 110
Effective length of database: 1,309,196
Effective search space: 144011560
Effective search space used: 144011560
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 50 (23.6 bits)