BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14481
(179 letters)
Database: swissprot
539,616 sequences; 191,569,459 total letters
Searching..................................................done
>sp|P20965|PABPA_XENLA Polyadenylate-binding protein 1-A OS=Xenopus laevis GN=pabpc1-a
PE=1 SV=3
Length = 633
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/90 (84%), Positives = 84/90 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 534 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 593
Query: 148 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 177
MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 594 MLESPESLRSKVDEAVAVLQAHQAKEAAQK 623
>sp|Q6IP09|PABPB_XENLA Polyadenylate-binding protein 1-B OS=Xenopus laevis GN=pabpc1-b
PE=2 SV=1
Length = 633
Score = 151 bits (382), Expect = 2e-36, Method: Compositional matrix adjust.
Identities = 76/90 (84%), Positives = 84/90 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 534 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 593
Query: 148 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 177
MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 594 MLESPESLRSKVDEAVAVLQAHQAKEAAQK 623
>sp|Q5R8F7|PABP1_PONAB Polyadenylate-binding protein 1 OS=Pongo abelii GN=PABPC1 PE=2 SV=1
Length = 636
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/90 (83%), Positives = 84/90 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 595
Query: 148 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 177
MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 596 MLESPESLRSKVDEAVAVLQAHQAKEAAQK 625
>sp|P29341|PABP1_MOUSE Polyadenylate-binding protein 1 OS=Mus musculus GN=Pabpc1 PE=1 SV=2
Length = 636
Score = 150 bits (380), Expect = 3e-36, Method: Compositional matrix adjust.
Identities = 75/90 (83%), Positives = 84/90 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLH 595
Query: 148 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 177
MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 596 MLESPESLRSKVDEAVAVLQAHQAKEAAQK 625
>sp|P11940|PABP1_HUMAN Polyadenylate-binding protein 1 OS=Homo sapiens GN=PABPC1 PE=1 SV=2
Length = 636
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/90 (83%), Positives = 84/90 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 595
Query: 148 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 177
MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 596 MLESPESLRSKVDEAVAVLQAHQAKEAAQK 625
>sp|P61286|PABP1_BOVIN Polyadenylate-binding protein 1 OS=Bos taurus GN=PABPC1 PE=2 SV=1
Length = 636
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/90 (83%), Positives = 84/90 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 595
Query: 148 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 177
MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 596 MLESPESLRSKVDEAVAVLQAHQAKEAAQK 625
>sp|Q9EPH8|PABP1_RAT Polyadenylate-binding protein 1 OS=Rattus norvegicus GN=Pabpc1 PE=2
SV=1
Length = 636
Score = 150 bits (380), Expect = 4e-36, Method: Compositional matrix adjust.
Identities = 75/90 (83%), Positives = 84/90 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLH 595
Query: 148 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 177
MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 596 MLESPESLRSKVDEAVAVLQAHQAKEAAQK 625
>sp|Q13310|PABP4_HUMAN Polyadenylate-binding protein 4 OS=Homo sapiens GN=PABPC4 PE=1 SV=1
Length = 644
Score = 145 bits (367), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 73/91 (80%), Positives = 82/91 (90%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+
Sbjct: 545 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 604
Query: 148 MLEHNESLKSKVEEAVAVLQAHQAKQAAVKK 178
MLE ESL+SKV+EAVAVLQAH AK+ A +K
Sbjct: 605 MLESPESLRSKVDEAVAVLQAHHAKKEAAQK 635
>sp|Q9H361|PABP3_HUMAN Polyadenylate-binding protein 3 OS=Homo sapiens GN=PABPC3 PE=1 SV=2
Length = 631
Score = 144 bits (363), Expect = 3e-34, Method: Compositional matrix adjust.
Identities = 72/90 (80%), Positives = 81/90 (90%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQE LT++ LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLY
Sbjct: 531 AVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLY 590
Query: 148 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 177
MLE ESL+SKV+EAVAVLQAHQAK+A K
Sbjct: 591 MLESPESLRSKVDEAVAVLQAHQAKEATQK 620
>sp|Q98SP8|EPABA_XENLA Embryonic polyadenylate-binding protein A OS=Xenopus laevis
GN=epabp-a PE=1 SV=2
Length = 629
Score = 135 bits (341), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 68/90 (75%), Positives = 79/90 (87%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AV +QGQEPLT+++LA A PQEQKQMLGER++P+I M+P LAGKITGMLLEIDN+ELL+
Sbjct: 533 AVLMQGQEPLTASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGMLLEIDNSELLH 592
Query: 148 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 177
MLE ESL SKVEEAVAVLQAHQAK+ A K
Sbjct: 593 MLESPESLHSKVEEAVAVLQAHQAKENAQK 622
>sp|Q6DEY7|EPAB_XENTR Embryonic polyadenylate-binding protein OS=Xenopus tropicalis
GN=epabp PE=2 SV=1
Length = 629
Score = 135 bits (340), Expect = 1e-31, Method: Compositional matrix adjust.
Identities = 69/90 (76%), Positives = 79/90 (87%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AV +QGQEPLT++ LA+A PQEQKQMLGERL+PLI M+P LAGKITGMLLEIDN+ELL+
Sbjct: 533 AVLMQGQEPLTASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLH 592
Query: 148 MLEHNESLKSKVEEAVAVLQAHQAKQAAVK 177
MLE ESL SKVEEAVAVLQAHQAK+ + K
Sbjct: 593 MLESPESLHSKVEEAVAVLQAHQAKENSQK 622
>sp|Q6GR16|EPABB_XENLA Embryonic polyadenylate-binding protein B OS=Xenopus laevis
GN=epabp-b PE=2 SV=1
Length = 629
Score = 134 bits (336), Expect = 4e-31, Method: Compositional matrix adjust.
Identities = 70/101 (69%), Positives = 84/101 (83%)
Query: 77 SSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGM 136
SS ++ AV +QGQEPLT+++LAAA QEQKQ+LGER++PLI M+P LAGKITGM
Sbjct: 522 SSAHLQQVLEPAVLMQGQEPLTASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGM 581
Query: 137 LLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVK 177
LLEIDN+ELL+MLE ESL SKVEEAVAVLQAHQAK++A K
Sbjct: 582 LLEIDNSELLHMLESPESLHSKVEEAVAVLQAHQAKESAPK 622
>sp|Q4VXU2|PAP1L_HUMAN Polyadenylate-binding protein 1-like OS=Homo sapiens GN=PABPC1L
PE=2 SV=1
Length = 614
Score = 124 bits (312), Expect = 3e-28, Method: Compositional matrix adjust.
Identities = 67/104 (64%), Positives = 80/104 (76%), Gaps = 2/104 (1%)
Query: 68 LSDKCSNPDSSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYP 127
L KCS+ S Y AVH+ GQEPLT++MLAAA EQKQM+GERL+PLI ++
Sbjct: 504 LPCKCSSAAHSTYRVQEP--AVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHT 561
Query: 128 ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 171
+LAGKITGMLLEIDN+ELL MLE ESL +K++EAVAVLQAHQA
Sbjct: 562 QLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQAHQA 605
>sp|P21187|PABP_DROME Polyadenylate-binding protein OS=Drosophila melanogaster GN=pAbp
PE=1 SV=3
Length = 634
Score = 110 bits (274), Expect = 6e-24, Method: Compositional matrix adjust.
Identities = 54/88 (61%), Positives = 73/88 (82%), Gaps = 2/88 (2%)
Query: 90 HVQGQ--EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
+QG+ E L +++LA A+PQEQKQ+LGERL+P+I+ M+ LAGKITGMLLEI+N+ELL+
Sbjct: 546 QLQGKNSEKLIASLLANAKPQEQKQILGERLYPMIEHMHANLAGKITGMLLEIENSELLH 605
Query: 148 MLEHNESLKSKVEEAVAVLQAHQAKQAA 175
M+E E+LK+KVEEAVAVLQ H+ + A
Sbjct: 606 MIEDQEALKAKVEEAVAVLQVHRVTEPA 633
>sp|Q5B630|PABP_EMENI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Emericella nidulans (strain FGSC A4 / ATCC 38163 /
CBS 112.46 / NRRL 194 / M139) GN=pab1 PE=2 SV=2
Length = 732
Score = 92.0 bits (227), Expect = 2e-18, Method: Compositional matrix adjust.
Identities = 45/73 (61%), Positives = 59/73 (80%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
LT+ L+AA PQ+QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE +E+L+
Sbjct: 633 LTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALR 692
Query: 157 SKVEEAVAVLQAH 169
+KV+EA++V +
Sbjct: 693 AKVDEALSVYDEY 705
>sp|A1CRM1|PABP_ASPCL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus clavatus (strain ATCC 1007 / CBS 513.65 /
DSM 816 / NCTC 3887 / NRRL 1) GN=pab1 PE=3 SV=1
Length = 754
Score = 87.8 bits (216), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 57/73 (78%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
LT+ L AA P +QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE +++L+
Sbjct: 652 LTAQALNAAAPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDDDALR 711
Query: 157 SKVEEAVAVLQAH 169
+KV+EA++V +
Sbjct: 712 AKVDEALSVYDEY 724
>sp|P0CP46|PABP_CRYNJ Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain JEC21 / ATCC MYA-565) GN=PAB1 PE=3 SV=1
Length = 673
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 54/70 (77%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
L + LA A P EQKQMLGE L+PLI PELAGKITGMLLE+DNAELL+++E +L+
Sbjct: 572 LDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQ 631
Query: 157 SKVEEAVAVL 166
KV+EA+ VL
Sbjct: 632 EKVDEALRVL 641
>sp|P0CP47|PABP_CRYNB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Cryptococcus neoformans var. neoformans serotype D
(strain B-3501A) GN=PAB1 PE=3 SV=1
Length = 673
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/70 (62%), Positives = 54/70 (77%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
L + LA A P EQKQMLGE L+PLI PELAGKITGMLLE+DNAELL+++E +L+
Sbjct: 572 LDAQSLARAAPAEQKQMLGEALYPLIHETQPELAGKITGMLLEMDNAELLHLVESQPALQ 631
Query: 157 SKVEEAVAVL 166
KV+EA+ VL
Sbjct: 632 EKVDEALRVL 641
>sp|Q0CR95|PABP_ASPTN Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus terreus (strain NIH 2624 / FGSC A1156)
GN=pab1 PE=3 SV=1
Length = 753
Score = 87.4 bits (215), Expect = 4e-17, Method: Compositional matrix adjust.
Identities = 44/69 (63%), Positives = 56/69 (81%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
LT+ LAAA +QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE +E+L+
Sbjct: 650 LTAQSLAAAPAPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSLLEDDEALR 709
Query: 157 SKVEEAVAV 165
+KV+EA++V
Sbjct: 710 AKVDEALSV 718
>sp|Q1DXH0|PABP_COCIM Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Coccidioides immitis (strain RS) GN=PAB1 PE=3 SV=1
Length = 768
Score = 85.1 bits (209), Expect = 2e-16, Method: Compositional matrix adjust.
Identities = 42/69 (60%), Positives = 55/69 (79%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
LT +L AA P +QKQMLGE ++P IQ PELAGKITGMLLE+DNAELL +++ + +LK
Sbjct: 665 LTLQVLNAAPPAQQKQMLGEAIYPKIQAQQPELAGKITGMLLEMDNAELLALVDDDAALK 724
Query: 157 SKVEEAVAV 165
+KV+EA+ V
Sbjct: 725 AKVDEALTV 733
>sp|Q2GSX8|PABP_CHAGB Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Chaetomium globosum (strain ATCC 6205 / CBS 148.51 /
DSM 1962 / NBRC 6347 / NRRL 1970) GN=PAB1 PE=3 SV=1
Length = 783
Score = 84.7 bits (208), Expect = 3e-16, Method: Compositional matrix adjust.
Identities = 43/77 (55%), Positives = 55/77 (71%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
L S + A PQ+QKQ+LGE LFP IQ + P+LAGKITGMLLE+DNAEL+ +LE +L
Sbjct: 679 LQSQLTATNNPQQQKQILGENLFPKIQALQPDLAGKITGMLLEMDNAELVNLLEDEAALV 738
Query: 157 SKVEEAVAVLQAHQAKQ 173
+KV EA+AV + Q
Sbjct: 739 AKVNEAMAVYDEYVKSQ 755
>sp|A4QUF0|PABP_MAGO7 Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-4617 /
FGSC 8958) GN=PAB1 PE=3 SV=1
Length = 762
Score = 82.4 bits (202), Expect = 1e-15, Method: Compositional matrix adjust.
Identities = 39/71 (54%), Positives = 56/71 (78%)
Query: 104 AAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAV 163
A P +QKQ+LGE +FP IQ ++PELAGKITGMLLE+DN EL+ ++E++ +L+SKV+EA+
Sbjct: 674 ADNPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDGALRSKVDEAL 733
Query: 164 AVLQAHQAKQA 174
AV + +Q
Sbjct: 734 AVYDDYVRQQG 744
>sp|Q0U1G2|PABP_PHANO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Phaeosphaeria nodorum (strain SN15 / ATCC MYA-4574 /
FGSC 10173) GN=PAB1 PE=3 SV=3
Length = 744
Score = 80.9 bits (198), Expect = 4e-15, Method: Compositional matrix adjust.
Identities = 38/66 (57%), Positives = 53/66 (80%)
Query: 100 TMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKV 159
++L+AA P +QKQMLGE L+P I M PELAGKITGMLLE+DN+EL+ + +L++KV
Sbjct: 653 SVLSAAAPGQQKQMLGEALYPKIHEMQPELAGKITGMLLEMDNSELINLTADESALRAKV 712
Query: 160 EEAVAV 165
+EA++V
Sbjct: 713 DEAMSV 718
>sp|Q7S6N6|PABP_NEUCR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neurospora crassa (strain ATCC 24698 / 74-OR23-1A /
CBS 708.71 / DSM 1257 / FGSC 987) GN=pab-1 PE=3 SV=1
Length = 764
Score = 79.3 bits (194), Expect = 1e-14, Method: Compositional matrix adjust.
Identities = 38/69 (55%), Positives = 50/69 (72%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
L + + PQ QKQ++GE LFP IQ + P LAGKITGMLLE+DNAEL+ + E + +L
Sbjct: 660 LQAQLATTQDPQAQKQIIGENLFPKIQAIQPALAGKITGMLLEMDNAELINLFEDDNALN 719
Query: 157 SKVEEAVAV 165
KV+EA+AV
Sbjct: 720 VKVQEALAV 728
>sp|O64380|PABP3_ARATH Polyadenylate-binding protein 3 OS=Arabidopsis thaliana GN=PAB3
PE=2 SV=1
Length = 660
Score = 76.3 bits (186), Expect = 1e-13, Method: Compositional matrix adjust.
Identities = 38/71 (53%), Positives = 56/71 (78%), Gaps = 1/71 (1%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
LTS+ LA+A P ++ +MLGE+L+PL++R P K+TGMLLE+D AE+L+++E E+LK
Sbjct: 575 LTSS-LASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALK 633
Query: 157 SKVEEAVAVLQ 167
SKV EA+ VL+
Sbjct: 634 SKVSEALDVLR 644
>sp|P42731|PABP2_ARATH Polyadenylate-binding protein 2 OS=Arabidopsis thaliana GN=PAB2
PE=1 SV=1
Length = 629
Score = 73.6 bits (179), Expect = 7e-13, Method: Compositional matrix adjust.
Identities = 40/83 (48%), Positives = 59/83 (71%), Gaps = 4/83 (4%)
Query: 96 PLTSTMLAA----AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEH 151
PLT LA+ A P++Q+ MLGE L+PL++++ E A K+TGMLLE+D E+L++LE
Sbjct: 537 PLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLES 596
Query: 152 NESLKSKVEEAVAVLQAHQAKQA 174
E+LK+KV EA+ VL++ A A
Sbjct: 597 PEALKAKVAEAMDVLRSVAAGGA 619
>sp|Q05196|PABP5_ARATH Polyadenylate-binding protein 5 OS=Arabidopsis thaliana GN=PAB5
PE=1 SV=3
Length = 682
Score = 72.8 bits (177), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 41/85 (48%), Positives = 59/85 (69%), Gaps = 5/85 (5%)
Query: 96 PLTSTMLAA----AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEH 151
PLT + LA+ A P + +MLG+ L+PL+++ P A K+TGMLLE+D AE+L++LE
Sbjct: 586 PLTISKLASDLALASPDKHPRMLGDHLYPLVEQQEPANAAKVTGMLLEMDQAEILHLLES 645
Query: 152 NESLKSKVEEAVAVLQAHQAKQAAV 176
E+LK+KV EA+ VL+ A AAV
Sbjct: 646 PEALKAKVSEALDVLR-RSADPAAV 669
>sp|Q4WK03|PABP_ASPFU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fumigata (strain ATCC MYA-4609 / Af293 /
CBS 101355 / FGSC A1100) GN=pab1 PE=3 SV=1
Length = 753
Score = 70.5 bits (171), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 56/73 (76%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
LT+ L+A P +QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE E+L+
Sbjct: 651 LTAQTLSAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNNELLGLLEDEEALR 710
Query: 157 SKVEEAVAVLQAH 169
+KV+EA++V +
Sbjct: 711 AKVDEALSVYDEY 723
>sp|A1D4K4|PABP_NEOFI Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Neosartorya fischeri (strain ATCC 1020 / DSM 3700 /
FGSC A1164 / NRRL 181) GN=pab1 PE=3 SV=1
Length = 751
Score = 70.1 bits (170), Expect = 7e-12, Method: Compositional matrix adjust.
Identities = 43/73 (58%), Positives = 55/73 (75%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
LT+ L A P +QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE E+L+
Sbjct: 649 LTAQTLNAVPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLGLLEDEEALR 708
Query: 157 SKVEEAVAVLQAH 169
+KV+EA++V +
Sbjct: 709 AKVDEALSVYDEY 721
>sp|Q2UK72|PABP_ASPOR Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus oryzae (strain ATCC 42149 / RIB 40)
GN=pab1 PE=3 SV=1
Length = 765
Score = 69.7 bits (169), Expect = 1e-11, Method: Compositional matrix adjust.
Identities = 43/69 (62%), Positives = 55/69 (79%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
LT+ L+AA P +QKQMLGE L+P IQ PELAGKITGMLLE++N ELL +LE E+L+
Sbjct: 662 LTAQALSAAPPPQQKQMLGEALYPKIQAQQPELAGKITGMLLEMENTELLSLLEDEEALR 721
Query: 157 SKVEEAVAV 165
+KV+EA+ V
Sbjct: 722 AKVDEALNV 730
>sp|A2Q848|PABP_ASPNC Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Aspergillus niger (strain CBS 513.88 / FGSC A1513)
GN=pab1 PE=3 SV=1
Length = 731
Score = 68.2 bits (165), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 33/52 (63%), Positives = 39/52 (75%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYM 148
+ + L AA P +QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +
Sbjct: 661 VNAQTLGAAPPAQQKQMLGEALYPKIQAQQPELAGKITGMLLEMDNTELLSL 712
>sp|P31209|PABP_SCHPO Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843)
GN=pab1 PE=1 SV=2
Length = 653
Score = 66.6 bits (161), Expect = 8e-11, Method: Compositional matrix adjust.
Identities = 35/73 (47%), Positives = 50/73 (68%)
Query: 95 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 154
E T+ LAA + +KQ+LGE L+P + +L+GKITGMLLE+ N+ELL +LE + +
Sbjct: 570 ERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSA 629
Query: 155 LKSKVEEAVAVLQ 167
L +V EA+ VLQ
Sbjct: 630 LNERVNEAIGVLQ 642
>sp|A3LXL0|PABP_PICST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Scheffersomyces stipitis (strain ATCC 58785 / CBS
6054 / NBRC 10063 / NRRL Y-11545) GN=PAB1 PE=3 SV=1
Length = 632
Score = 62.8 bits (151), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 30/76 (39%), Positives = 51/76 (67%), Gaps = 4/76 (5%)
Query: 99 STMLAAAQPQEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNES 154
+ ++A+A P +QK++LGE L+P I + PE AGKITGM+L++DN E+L +LE +E
Sbjct: 539 AAIIASAPPDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLDNQEILALLEDDEL 598
Query: 155 LKSKVEEAVAVLQAHQ 170
+ E+A+ + ++
Sbjct: 599 FTNHFEDALTAFEEYK 614
>sp|Q6BI95|PABP_DEBHA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Debaryomyces hansenii (strain ATCC 36239 / CBS 767 /
JCM 1990 / NBRC 0083 / IGC 2968) GN=PAB1 PE=3 SV=2
Length = 627
Score = 60.5 bits (145), Expect = 6e-09, Method: Compositional matrix adjust.
Identities = 31/85 (36%), Positives = 51/85 (60%), Gaps = 4/85 (4%)
Query: 99 STMLAAAQPQEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNES 154
+ ++A A +QK++LGE L+P I + PE AGKITGM+L++DN E+L +LE +E
Sbjct: 542 AAIIANAPADQQKRILGEELYPKIVSTGKAQEPEAAGKITGMMLDLDNEEILALLEDDEL 601
Query: 155 LKSKVEEAVAVLQAHQAKQAAVKKE 179
+ E+A+ + ++ A E
Sbjct: 602 FNTHFEDALTAFEEYKKSSEAATAE 626
>sp|Q62671|UBR5_RAT E3 ubiquitin-protein ligase UBR5 OS=Rattus norvegicus GN=Ubr5 PE=1
SV=3
Length = 2788
Score = 60.1 bits (144), Expect = 8e-09, Method: Compositional matrix adjust.
Identities = 32/66 (48%), Positives = 46/66 (69%)
Query: 110 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 169
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++VEEA+ ++ AH
Sbjct: 2383 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEEAMELIVAH 2442
Query: 170 QAKQAA 175
+ A
Sbjct: 2443 GRENGA 2448
>sp|Q80TP3|UBR5_MOUSE E3 ubiquitin-protein ligase UBR5 OS=Mus musculus GN=Ubr5 PE=1 SV=2
Length = 2792
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 46/66 (69%)
Query: 110 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 169
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2387 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2446
Query: 170 QAKQAA 175
+ A
Sbjct: 2447 GRENGA 2452
>sp|O95071|UBR5_HUMAN E3 ubiquitin-protein ligase UBR5 OS=Homo sapiens GN=UBR5 PE=1 SV=2
Length = 2799
Score = 58.5 bits (140), Expect = 2e-08, Method: Compositional matrix adjust.
Identities = 31/66 (46%), Positives = 46/66 (69%)
Query: 110 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 169
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 2393 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 2452
Query: 170 QAKQAA 175
+ A
Sbjct: 2453 GRENGA 2458
>sp|Q9ZQA8|PABPX_ARATH Probable polyadenylate-binding protein At2g36660 OS=Arabidopsis
thaliana GN=At2g36660 PE=3 SV=1
Length = 609
Score = 56.6 bits (135), Expect = 8e-08, Method: Compositional matrix adjust.
Identities = 31/64 (48%), Positives = 46/64 (71%)
Query: 112 QMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 171
Q+LGE L PL++++ P+LA KITGMLLE+D +ELL +L+ E L +V+EA VL++ +
Sbjct: 527 QLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDEAFEVLKSSKT 586
Query: 172 KQAA 175
A
Sbjct: 587 NLTA 590
>sp|Q4P8R9|PABP_USTMA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ustilago
maydis (strain 521 / FGSC 9021) GN=PAB1 PE=3 SV=1
Length = 651
Score = 55.8 bits (133), Expect = 1e-07, Method: Compositional matrix adjust.
Identities = 35/64 (54%), Positives = 50/64 (78%)
Query: 107 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVL 166
P+EQKQMLGE ++P + PELAGK+TGM+LE+ ELL++LE +E+L +KV EA+ VL
Sbjct: 568 PEEQKQMLGEAIYPKVAASQPELAGKLTGMILELPVTELLHLLEESEALDAKVNEALEVL 627
Query: 167 QAHQ 170
+ +Q
Sbjct: 628 KEYQ 631
>sp|A5DM21|PABP_PICGU Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Meyerozyma guilliermondii (strain ATCC 6260 / CBS 566
/ DSM 6381 / JCM 1539 / NBRC 10279 / NRRL Y-324) GN=PAB1
PE=3 SV=2
Length = 631
Score = 55.5 bits (132), Expect = 2e-07, Method: Compositional matrix adjust.
Identities = 27/71 (38%), Positives = 47/71 (66%), Gaps = 4/71 (5%)
Query: 109 EQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVA 164
+QK++LGE L+P I + PE AGKITGM+L+++N E+L +LE +E ++ E+A+
Sbjct: 560 QQKRILGEELYPKIVATGKAQEPEAAGKITGMMLDLENEEILALLEDDELFENHFEDALT 619
Query: 165 VLQAHQAKQAA 175
+ ++ + A
Sbjct: 620 AFEEYKKGEQA 630
>sp|P51592|HYD_DROME E3 ubiquitin-protein ligase hyd OS=Drosophila melanogaster GN=hyd
PE=1 SV=3
Length = 2885
Score = 54.7 bits (130), Expect = 3e-07, Method: Compositional matrix adjust.
Identities = 26/66 (39%), Positives = 41/66 (62%)
Query: 112 QMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQA 171
Q +GERL+P I + A KITGMLLEI +LL ++ +E+L+ KV EA+ ++ Q
Sbjct: 2502 QQIGERLYPKIHSINQTHAPKITGMLLEIPTPQLLSVISSDETLRQKVNEAIEIITFKQK 2561
Query: 172 KQAAVK 177
+ + +
Sbjct: 2562 SETSAQ 2567
>sp|Q54BM2|PAP1A_DICDI Polyadenylate-binding protein 1-A OS=Dictyostelium discoideum
GN=pabpc1A PE=1 SV=1
Length = 565
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 27/62 (43%), Positives = 39/62 (62%), Gaps = 1/62 (1%)
Query: 109 EQKQMLGERLFPLIQRMYPELAGKITGMLLE-IDNAELLYMLEHNESLKSKVEEAVAVLQ 167
+Q LGE L+PLI P+LAGKITGMLL+ + EL + + + L K+ EA+ VL
Sbjct: 504 QQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADKIREALEVLG 563
Query: 168 AH 169
++
Sbjct: 564 SN 565
>sp|A5DW14|PABP_LODEL Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Lodderomyces elongisporus (strain ATCC 11503 / CBS
2605 / JCM 1781 / NBRC 1676 / NRRL YB-4239) GN=PAB1 PE=3
SV=1
Length = 661
Score = 50.4 bits (119), Expect = 6e-06, Method: Compositional matrix adjust.
Identities = 28/81 (34%), Positives = 48/81 (59%), Gaps = 4/81 (4%)
Query: 99 STMLAAAQPQEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNES 154
+ ++A A + QK++LGE L+ I + PE AGKITGM+L ++N E+L +L+ E
Sbjct: 568 AALIANAPLEAQKRILGEELYQRIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDEEL 627
Query: 155 LKSKVEEAVAVLQAHQAKQAA 175
+ EEA+ + ++ + A
Sbjct: 628 FNNHFEEALNAFEEYKNSEGA 648
>sp|Q5AI15|PABP_CANAL Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
albicans (strain SC5314 / ATCC MYA-2876) GN=PAB1 PE=3
SV=1
Length = 629
Score = 47.0 bits (110), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 28/85 (32%), Positives = 52/85 (61%), Gaps = 4/85 (4%)
Query: 99 STMLAAAQPQEQKQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNES 154
+ ++++ +QK++LGE L+P I + PE AGKITGM+L ++N E+L +L+ +E
Sbjct: 542 AAIISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDDEL 601
Query: 155 LKSKVEEAVAVLQAHQAKQAAVKKE 179
+ E+A+ + ++ +AA E
Sbjct: 602 FNNHFEDALTAFEEYKKSEAAGNAE 626
>sp|Q6CDH3|PABP_YARLI Polyadenylate-binding protein, cytoplasmic and nuclear OS=Yarrowia
lipolytica (strain CLIB 122 / E 150) GN=PAB1 PE=3 SV=1
Length = 629
Score = 45.8 bits (107), Expect = 2e-04, Method: Compositional matrix adjust.
Identities = 26/76 (34%), Positives = 45/76 (59%), Gaps = 5/76 (6%)
Query: 99 STMLAAAQPQEQKQMLGERLFP--LIQRMY---PELAGKITGMLLEIDNAELLYMLEHNE 153
S L A ++ KQ++GE L+P L ++ E AGKITGMLLE+ E+L +++ E
Sbjct: 547 SNALENAPEEQHKQLVGEALYPKVLAEKAIDGNAEFAGKITGMLLEMPIKEILEVIDDEE 606
Query: 154 SLKSKVEEAVAVLQAH 169
L++++ +A+ +
Sbjct: 607 GLQAQINDAITAYNEY 622
>sp|P04147|PABP_YEAST Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c)
GN=PAB1 PE=1 SV=4
Length = 577
Score = 42.7 bits (99), Expect = 0.001, Method: Compositional matrix adjust.
Identities = 24/68 (35%), Positives = 42/68 (61%), Gaps = 2/68 (2%)
Query: 108 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 165
Q+Q+Q LGE+L+ + + E AGKITGM+L++ E+ +LE +E + +EA A
Sbjct: 503 QKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAA 562
Query: 166 LQAHQAKQ 173
++ + +Q
Sbjct: 563 YESFKKEQ 570
>sp|Q6FKG4|PABP_CANGA Polyadenylate-binding protein, cytoplasmic and nuclear OS=Candida
glabrata (strain ATCC 2001 / CBS 138 / JCM 3761 / NBRC
0622 / NRRL Y-65) GN=PAB1 PE=3 SV=1
Length = 579
Score = 42.0 bits (97), Expect = 0.002, Method: Compositional matrix adjust.
Identities = 24/65 (36%), Positives = 41/65 (63%), Gaps = 2/65 (3%)
Query: 108 QEQKQMLGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAV 165
Q+Q+Q LGE L+ I + E AGKITGM+L++ E++ +LE++E + +EA A
Sbjct: 501 QKQRQALGEELYKRIFSRTNDEEAAGKITGMILDLPPQEVVPLLENDELFEQHFKEASAA 560
Query: 166 LQAHQ 170
++ +
Sbjct: 561 YESFK 565
>sp|Q6CSV3|PABP_KLULA Polyadenylate-binding protein, cytoplasmic and nuclear
OS=Kluyveromyces lactis (strain ATCC 8585 / CBS 2359 /
DSM 70799 / NBRC 1267 / NRRL Y-1140 / WM37) GN=PAB1 PE=3
SV=1
Length = 592
Score = 39.3 bits (90), Expect = 0.015, Method: Compositional matrix adjust.
Identities = 20/67 (29%), Positives = 42/67 (62%), Gaps = 2/67 (2%)
Query: 111 KQMLGERLFPLIQRMYPE--LAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQA 168
+Q LGE+L+ + + AGKITGM+L++ +++ +L+++E + + +EA+A +
Sbjct: 524 RQALGEQLYKKVSAKIDDENAAGKITGMILDLPPQQVIQLLDNDEQFEQQFQEALAAYEN 583
Query: 169 HQAKQAA 175
+ +Q A
Sbjct: 584 FKKEQEA 590
>sp|Q74ZS6|PABP_ASHGO Polyadenylate-binding protein, cytoplasmic and nuclear OS=Ashbya
gossypii (strain ATCC 10895 / CBS 109.51 / FGSC 9923 /
NRRL Y-1056) GN=PAB1 PE=3 SV=1
Length = 585
Score = 36.6 bits (83), Expect = 0.086, Method: Compositional matrix adjust.
Identities = 21/56 (37%), Positives = 36/56 (64%), Gaps = 2/56 (3%)
Query: 114 LGERLFPLI--QRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQ 167
LGE+L+ + + E AGKITGM+L++ +++ +LE++E L+ +EA A Q
Sbjct: 508 LGEQLYQKVFAKTQDDEAAGKITGMILDLPPQQVIQLLENDELLEQHFQEAHAAYQ 563
>sp|P16573|CEAM1_RAT Carcinoembryonic antigen-related cell adhesion molecule 1 OS=Rattus
norvegicus GN=Ceacam1 PE=1 SV=3
Length = 519
Score = 33.5 bits (75), Expect = 0.82, Method: Compositional matrix adjust.
Identities = 30/119 (25%), Positives = 55/119 (46%), Gaps = 13/119 (10%)
Query: 3 DVAPPDSPR-AHQAHAEDLSNPWSGEGGVNVAMISGISFGALALVTLFGAVSFIMYRRYR 61
+++ P S R +H + + +P G G++ I+GI G++A V L A+++ +Y R
Sbjct: 393 EISNPVSFRISHPIKLDVIPDPTQGNSGLSEGAIAGIVIGSVAGVALIAALAYFLYSRKT 452
Query: 62 W----------NKPQTLSDKCS-NPDSSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQE 109
+KP T S + DS +DD + ++ Q+ T A++ P E
Sbjct: 453 GGGSDHRDLTEHKPSTSSHNLGPSDDSPNKVDDVSYSVLNFNAQQSKRPTS-ASSSPTE 510
Database: swissprot
Posted date: Mar 23, 2013 2:32 AM
Number of letters in database: 191,569,459
Number of sequences in database: 539,616
Lambda K H
0.315 0.130 0.370
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 63,352,363
Number of Sequences: 539616
Number of extensions: 2362277
Number of successful extensions: 7735
Number of sequences better than 100.0: 50
Number of HSP's better than 100.0 without gapping: 63
Number of HSP's successfully gapped in prelim test: 18
Number of HSP's that attempted gapping in prelim test: 7662
Number of HSP's gapped (non-prelim): 84
length of query: 179
length of database: 191,569,459
effective HSP length: 110
effective length of query: 69
effective length of database: 132,211,699
effective search space: 9122607231
effective search space used: 9122607231
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 57 (26.6 bits)