Query psy14481
Match_columns 179
No_of_seqs 138 out of 325
Neff 4.0
Searched_HMMs 29240
Date Fri Aug 16 20:57:11 2013
Command hhsearch -i /work/01045/syshi/Psyhhblits/psy14481.a3m -d /work/01045/syshi/HHdatabase/pdb70.hhm -o /work/01045/syshi/hhsearch_pdb/14481hhsearch_pdb -cpu 12 -v 0
No Hit Prob E-value P-value Score SS Cols Query HMM Template HMM
1 1g9l_A Polyadenylate-binding p 100.0 4.8E-36 1.6E-40 239.8 6.1 109 66-174 19-130 (144)
2 1nmr_A Poly(A)-binding protein 100.0 8.3E-36 2.8E-40 220.6 0.3 82 90-171 3-84 (85)
3 3kuj_A Polyadenylate-binding p 100.0 1.2E-34 4E-39 215.4 5.9 83 95-177 5-87 (88)
4 1ifw_A Polyadenylate-binding p 100.0 1.4E-34 4.8E-39 216.6 2.5 82 95-176 5-88 (92)
5 2dyd_A Poly(A)-binding protein 100.0 8.8E-34 3E-38 209.7 -1.0 77 96-172 8-84 (85)
6 1i2t_A HYD protein; four alpha 100.0 2.7E-30 9.1E-35 180.7 2.7 61 110-170 1-61 (61)
7 2k1k_A Ephrin type-A receptor 97.0 9E-05 3.1E-09 47.0 -0.2 35 26-60 4-38 (38)
8 2k9y_A Ephrin type-A receptor 90.6 0.064 2.2E-06 33.2 0.6 32 29-60 9-40 (41)
9 2ks1_B Epidermal growth factor 89.5 0.065 2.2E-06 34.8 -0.0 32 31-62 9-40 (44)
10 2l2t_A Receptor tyrosine-prote 89.4 0.059 2E-06 35.2 -0.3 34 29-62 6-39 (44)
11 2l34_A TYRO protein tyrosine k 73.6 0.48 1.6E-05 29.0 -0.7 28 29-56 3-30 (33)
12 2jwa_A Receptor tyrosine-prote 50.0 2.6 8.8E-05 27.4 -0.6 29 32-61 11-39 (44)
13 1s7q_A H-2KB, H-2 class I hist 37.7 5.5 0.00019 34.2 -0.6 26 35-60 283-312 (348)
14 2llm_A Amyloid beta A4 protein 39.0 9.2 0.00032 24.8 0.0 28 32-60 16-43 (43)
15 2gle_A Neurabin-1; SAM domain, 26.7 50 0.0017 21.7 2.9 43 130-172 30-73 (74)
16 2lp1_A C99; alzheimer'S D memb 30.9 15 0.00052 28.4 0.0 20 32-51 29-48 (122)
17 1ash_A Hemoglobin (OXY); oxyge 22.3 1.2E+02 0.0041 23.2 4.7 54 107-161 19-92 (150)
18 2wx3_A MRNA-decapping enzyme 1 21.6 45 0.0015 22.2 1.8 21 143-163 18-38 (51)
19 2guz_B Mitochondrial import in 20.6 85 0.0029 21.0 3.1 19 154-172 44-62 (65)
20 4ev6_A Magnesium transport pro 20.3 21 0.00072 30.1 -0.1 22 41-62 317-338 (339)
No 1
>1g9l_A Polyadenylate-binding protein 1; all-helical domain, RNA binding protein; NMR {Homo sapiens} SCOP: a.144.1.1 PDB: 1jgn_A 1jh4_A
Probab=100.00 E-value=4.8e-36 Score=239.80 Aligned_cols=109 Identities=69% Similarity=0.884 Sum_probs=96.4
Q ss_pred cccccCCCCCCCCCC-CC--CccccccccCCCCCCChhHhhcCChHHHHHHhhhhhhhhHhhhCCCCCCCceeeccCCCh
Q psy14481 66 QTLSDKCSNPDSSGY-ID--DSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDN 142 (179)
Q Consensus 66 q~YS~~vRNP~s~~~-iq--DSt~~~~~~~g~epl~~s~La~a~peeQKq~LGErLyplV~~l~p~~AgKITGMLLEmd~ 142 (179)
.+|+.+++||+.+.. .+ ...+++++++|++|+++++|+++++++||+||||+|||+|+.++|++||||||||||||+
T Consensus 19 ~~y~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~pl~as~La~a~p~eQkq~LGE~LyplV~~~~p~~A~KITGMLLEmd~ 98 (144)
T 1g9l_A 19 YKYAAGVRNPQQHLNAQPQVTMQQPAVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDN 98 (144)
T ss_dssp CCCCCTTSCCCCCCCCCSCCCCSSCSCCCCSCCCCSHHHHTTCTTTTTTTTTTSSSHHHHHHHTTSCCSSHHHHTTTSSS
T ss_pred cCCCCCCCCCCCcccccccccCCCCCCCCCCcchhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhccCCH
Confidence 467889999952111 11 223477899999999999999999999999999999999999999999999999999999
Q ss_pred HHHHHhhcChHHHHHHHHHHHHHHHHHHHhHH
Q psy14481 143 AELLYMLEHNESLKSKVEEAVAVLQAHQAKQA 174 (179)
Q Consensus 143 sELL~mLes~e~L~~KV~EA~~vL~~~q~~~~ 174 (179)
+|||+||+|+|+|++||+||++||++|++++.
T Consensus 99 ~ElL~LLes~e~L~~kV~EA~~vL~~~~~~~~ 130 (144)
T 1g9l_A 99 SELLHMLESPESLRSKVDEAVAVLQAHQAKEA 130 (144)
T ss_dssp HHHHHHHHCTTHHHHHHHHHHHHHHTTSSSTT
T ss_pred HHHHHHHcCHHHHHHHHHHHHHHHHHHHhccc
Confidence 99999999999999999999999999997654
No 2
>1nmr_A Poly(A)-binding protein; all helical domain, peptide binding protein; NMR {Trypanosoma cruzi} SCOP: a.144.1.1
Probab=100.00 E-value=8.3e-36 Score=220.56 Aligned_cols=82 Identities=44% Similarity=0.643 Sum_probs=79.1
Q ss_pred ccCCCCCCChhHhhcCChHHHHHHhhhhhhhhHhhhCCCCCCCceeeccCCChHHHHHhhcChHHHHHHHHHHHHHHHHH
Q psy14481 90 HVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 169 (179)
Q Consensus 90 ~~~g~epl~~s~La~a~peeQKq~LGErLyplV~~l~p~~AgKITGMLLEmd~sELL~mLes~e~L~~KV~EA~~vL~~~ 169 (179)
.++|++|+++++|++++|++|||+|||+|||+|++++|++||||||||||||++||++||+|+++|++||+||++||++|
T Consensus 3 ~~~~~~~l~~s~La~a~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~ElL~Lle~~e~L~~kV~EA~~vL~~~ 82 (85)
T 1nmr_A 3 SLASQGQNLSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILNLLDTPGLLDAKVQEALEVLNRH 82 (85)
T ss_dssp CCCCCCCTTHHHHTTCHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHCSCTHHHHHHTTCCTHHHHHHHHHHHHHHTTCC
T ss_pred CccCCCccCHHHHHcCChHHHHHHHHHHHHHHHHHhCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHh
Confidence 46899999999999999999999999999999999999999999999999999999999999999999999999999887
Q ss_pred HH
Q psy14481 170 QA 171 (179)
Q Consensus 170 q~ 171 (179)
++
T Consensus 83 ~~ 84 (85)
T 1nmr_A 83 MN 84 (85)
T ss_dssp CC
T ss_pred hc
Confidence 53
No 3
>3kuj_A Polyadenylate-binding protein 1; protein-protein complex, methylation, mRNA processing, mRNA nucleus, phosphoprotein, RNA-binding, spliceosome; 1.40A {Homo sapiens} PDB: 3ktr_A 3kui_A 3ktp_A 3kus_A* 3kut_A 3pkn_A 2rqg_B 2rqh_B 3kur_A 3pth_A 2x04_A
Probab=100.00 E-value=1.2e-34 Score=215.45 Aligned_cols=83 Identities=81% Similarity=1.062 Sum_probs=76.4
Q ss_pred CCCChhHhhcCChHHHHHHhhhhhhhhHhhhCCCCCCCceeeccCCChHHHHHhhcChHHHHHHHHHHHHHHHHHHHhHH
Q psy14481 95 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQA 174 (179)
Q Consensus 95 epl~~s~La~a~peeQKq~LGErLyplV~~l~p~~AgKITGMLLEmd~sELL~mLes~e~L~~KV~EA~~vL~~~q~~~~ 174 (179)
+|+++++|++++|++|||+|||+|||+|++++|++||||||||||||++|+++||+|+++|++||+||++||++|+.++.
T Consensus 5 ~~l~~s~la~a~p~~Qkq~LGE~Lyp~V~~~~p~~A~KITGMLLEmd~~Ell~lle~~e~L~~kV~EA~~vL~~~~~~~~ 84 (88)
T 3kuj_A 5 SPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAKEA 84 (88)
T ss_dssp -CCCHHHHHTSCHHHHHHHHHHHHHHHHHHHCTTTHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHC--
T ss_pred ccchHHHHHcCCHHHHHHHHHHHhHHHHHhhCCCccchhhhHhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHhhhc
Confidence 57999999999999999999999999999999999999999999999999999999999999999999999999999987
Q ss_pred hhh
Q psy14481 175 AVK 177 (179)
Q Consensus 175 ~~~ 177 (179)
++|
T Consensus 85 ~~~ 87 (88)
T 3kuj_A 85 AQK 87 (88)
T ss_dssp ---
T ss_pred cCC
Confidence 665
No 4
>1ifw_A Polyadenylate-binding protein, cytoplasmic and nuclear; all-helical domain, RNA binding protein; NMR {Saccharomyces cerevisiae} SCOP: a.144.1.1
Probab=100.00 E-value=1.4e-34 Score=216.65 Aligned_cols=82 Identities=30% Similarity=0.440 Sum_probs=78.1
Q ss_pred CCCChhHhhcCChHHHHHHhhhhhhhhHhh--hCCCCCCCceeeccCCChHHHHHhhcChHHHHHHHHHHHHHHHHHHHh
Q psy14481 95 EPLTSTMLAAAQPQEQKQMLGERLFPLIQR--MYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAK 172 (179)
Q Consensus 95 epl~~s~La~a~peeQKq~LGErLyplV~~--l~p~~AgKITGMLLEmd~sELL~mLes~e~L~~KV~EA~~vL~~~q~~ 172 (179)
.|+++++|++++|++||+||||+|||+|+. ++|++||||||||||||++||++||+|+++|++||+||++||++|++.
T Consensus 5 ~p~~a~~la~~~p~~Qkq~LGE~LyplV~~~~~~pelAgKITGMLLEmd~~ElL~LLes~e~L~~kV~EA~~vL~~~~~~ 84 (92)
T 1ifw_A 5 SPRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDELFEQHYKEASAAYESFKKE 84 (92)
T ss_dssp CSSCCSSCCSCSCHHHHHHHHHHHHHHHGGGCCCHHHHHHHHHHHTTSCHHHHHHHHTCHHHHHHHHHHHHHHHHHHHHS
T ss_pred CccchHHHhcCChHHHHHHHHHHHHHHHHHhhcCccccchhhHhHhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHh
Confidence 688999999999999999999999999999 999999999999999999999999999999999999999999999975
Q ss_pred HHhh
Q psy14481 173 QAAV 176 (179)
Q Consensus 173 ~~~~ 176 (179)
+.+|
T Consensus 85 ~~~~ 88 (92)
T 1ifw_A 85 QEQQ 88 (92)
T ss_dssp CTTS
T ss_pred hhhh
Confidence 5443
No 5
>2dyd_A Poly(A)-binding protein; alpha helical protein, RNA binding protein; NMR {Triticum aestivum}
Probab=99.97 E-value=8.8e-34 Score=209.71 Aligned_cols=77 Identities=43% Similarity=0.698 Sum_probs=73.9
Q ss_pred CCChhHhhcCChHHHHHHhhhhhhhhHhhhCCCCCCCceeeccCCChHHHHHhhcChHHHHHHHHHHHHHHHHHHHh
Q psy14481 96 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAK 172 (179)
Q Consensus 96 pl~~s~La~a~peeQKq~LGErLyplV~~l~p~~AgKITGMLLEmd~sELL~mLes~e~L~~KV~EA~~vL~~~q~~ 172 (179)
++++++|++++|++||++|||+|||+|++++|++||||||||||||++||++||+|+|+|++||+||++||++|+++
T Consensus 8 ~~~as~La~~~p~~Qkq~LGE~LyplV~~~~p~~AgKITGMLLEmd~~Ell~Lles~e~L~~kv~EA~~vL~~~~~~ 84 (85)
T 2dyd_A 8 GALASALANSPPETQRMMLGENLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLLESPDALKAKVAEAMEVLRSAQQH 84 (85)
T ss_dssp TTSCHHHHCCCHHHHHHHHHHHHHHHHCCSCHHHHHHHHHHHHHHCHHHHHHHTTCSHHHHHHHHHHHHHHTSCSSC
T ss_pred hhhHHHHHcCCHHHHHHHHHHHHHHHHHHhCccccchhhhhhhcCCHHHHHHHHcCHHHHHHHHHHHHHHHHHHhhc
Confidence 45899999999999999999999999999999999999999999999999999999999999999999999988753
No 6
>1i2t_A HYD protein; four alpha-helical domain, ligase; 1.04A {Homo sapiens} SCOP: a.144.1.1 PDB: 3ntw_A
Probab=99.96 E-value=2.7e-30 Score=180.72 Aligned_cols=61 Identities=49% Similarity=0.835 Sum_probs=59.6
Q ss_pred HHHHhhhhhhhhHhhhCCCCCCCceeeccCCChHHHHHhhcChHHHHHHHHHHHHHHHHHH
Q psy14481 110 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQ 170 (179)
Q Consensus 110 QKq~LGErLyplV~~l~p~~AgKITGMLLEmd~sELL~mLes~e~L~~KV~EA~~vL~~~q 170 (179)
|||+|||+|||+|++++|++||||||||||||++|+++||+|+++|++||+||++||++|+
T Consensus 1 qkq~LGe~Lyp~V~~~~p~~A~KITGMLLE~d~~ell~ll~~~e~L~~kv~EA~~vl~~~~ 61 (61)
T 1i2t_A 1 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAHG 61 (61)
T ss_dssp CHHHHHHHHHHHHHHHCGGGHHHHHHHHTTSCHHHHHHHHHCHHHHHHHHHHHHHHHHHHC
T ss_pred CHHHHHHHHHHHHHHhCcccccchhhhhccCCHHHHHHHHcCHHHHHHHHHHHHHHHHHcC
Confidence 7999999999999999999999999999999999999999999999999999999999874
No 7
>2k1k_A Ephrin type-A receptor 1; EPHA1, receptor tyrosine kinase, dimeric transmembrane domain, ATP-binding, glycoprotein, nucleotide-binding; NMR {Homo sapiens} PDB: 2k1l_A
Probab=97.01 E-value=9e-05 Score=46.99 Aligned_cols=35 Identities=23% Similarity=0.231 Sum_probs=30.7
Q ss_pred CCCCceeeeeechhhhHHHHHHhhhcceeeeeecc
Q psy14481 26 GEGGVNVAMISGISFGALALVTLFGAVSFIMYRRY 60 (179)
Q Consensus 26 ~~~~~~~~~i~g~~~~~~~i~~~~~~~~~~~yrr~ 60 (179)
+.++++.|+|+||..|+++-+.++.++.|++||||
T Consensus 4 ~~~~ls~GaIAGiVvG~v~gv~li~~l~~~~~rrr 38 (38)
T 2k1k_A 4 VSRGLTGGEIVAVIFGLLLGAALLLGILVFRSRRA 38 (38)
T ss_dssp SSTTCCHHHHHHHHHHHHHHHHHHHHHHHHHHCCC
T ss_pred CCCCCCCCceeeeehHHHHHHHHHHHHHHHHeecC
Confidence 34678889999999999999999999999999886
No 8
>2k9y_A Ephrin type-A receptor 2; receptor tyrosine kinase, membrane protein, dimeric transmembrane domain, ephrin receptor, ATP-binding, glycoprotein; NMR {Homo sapiens}
Probab=90.62 E-value=0.064 Score=33.21 Aligned_cols=32 Identities=22% Similarity=0.315 Sum_probs=20.3
Q ss_pred CceeeeeechhhhHHHHHHhhhcceeeeeecc
Q psy14481 29 GVNVAMISGISFGALALVTLFGAVSFIMYRRY 60 (179)
Q Consensus 29 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~yrr~ 60 (179)
+.+.++|.|...++++++.++..+.+++.|||
T Consensus 9 ~~~~~~I~~~vv~Gv~ll~~iv~~~~~~~rRr 40 (41)
T 2k9y_A 9 GSGNLAVIGGVAVGVVLLLVLAGVGFFIHRRR 40 (41)
T ss_dssp CCSSTHHHHHHHHHHHHHHHHHHHHHSSSSSC
T ss_pred CCceEEEEeehhHHHHHHHHHHHHheeEeeec
Confidence 34567788888888888774444445544543
No 9
>2ks1_B Epidermal growth factor receptor; ERBB1, ERBB2, transmembrane, heterodimer, complex, tyrosine receptor, bicelles, transferase; NMR {Homo sapiens}
Probab=89.53 E-value=0.065 Score=34.84 Aligned_cols=32 Identities=22% Similarity=0.198 Sum_probs=22.9
Q ss_pred eeeeeechhhhHHHHHHhhhcceeeeeecccC
Q psy14481 31 NVAMISGISFGALALVTLFGAVSFIMYRRYRW 62 (179)
Q Consensus 31 ~~~~i~g~~~~~~~i~~~~~~~~~~~yrr~~~ 62 (179)
++++|+|-..|+++++.+++.+.|++.|||+-
T Consensus 9 ~~~~IA~gVVgGv~~~~ii~~~~~~~~RRr~~ 40 (44)
T 2ks1_B 9 KIPSIATGMVGALLLLLVVALGIGLFMRRRHI 40 (44)
T ss_dssp CSSSSTHHHHHHHHHHHHHHHHHHHHHHTTTC
T ss_pred CcceEEeehhHHHHHHHHHHHHHHHHhhhhHh
Confidence 46677888888888888877666666666544
No 10
>2l2t_A Receptor tyrosine-protein kinase ERBB-4; transmembrane dimer, membrane domain, membrane protei; NMR {Homo sapiens}
Probab=89.37 E-value=0.059 Score=35.16 Aligned_cols=34 Identities=18% Similarity=0.265 Sum_probs=25.5
Q ss_pred CceeeeeechhhhHHHHHHhhhcceeeeeecccC
Q psy14481 29 GVNVAMISGISFGALALVTLFGAVSFIMYRRYRW 62 (179)
Q Consensus 29 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~yrr~~~ 62 (179)
+-++++|+|-..|+++++.+++.+.|++.|||+-
T Consensus 6 ~s~~~aIA~gVVgGv~~v~ii~~~~~~~~RRRr~ 39 (44)
T 2l2t_A 6 HARTPLIAAGVIGGLFILVIVGLTFAVYVRRKSI 39 (44)
T ss_dssp SCSSHHHHHHHHHHHHHHHHHHHHHHHHHHTTCS
T ss_pred CCCcceEEEeehHHHHHHHHHHHHHHHHhhhhhh
Confidence 4567788998898888888888776666666554
No 11
>2l34_A TYRO protein tyrosine kinase-binding protein; immunoreceptor, transmembrane assembly, DAP12, protein bindi; NMR {Homo sapiens} PDB: 2l35_B
Probab=73.64 E-value=0.48 Score=28.96 Aligned_cols=28 Identities=25% Similarity=0.522 Sum_probs=21.3
Q ss_pred CceeeeeechhhhHHHHHHhhhcceeee
Q psy14481 29 GVNVAMISGISFGALALVTLFGAVSFIM 56 (179)
Q Consensus 29 ~~~~~~i~g~~~~~~~i~~~~~~~~~~~ 56 (179)
++|.|+|+||.+|.++...+++..-|++
T Consensus 3 ~L~~gaIaGIVvgdi~~t~~i~~~vy~~ 30 (33)
T 2l34_A 3 TVSPGVLAGIVVGDLVLTVLIALAVYFL 30 (33)
T ss_dssp CCCTHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred ccCcceEEeEeHHHHHHHHHHHHHHhhe
Confidence 4677899999999988877766655543
No 12
>2jwa_A Receptor tyrosine-protein kinase ERBB-2; transmembrane helix dimer, protein kinase receptor membrane domain, ATP-binding, glycoprotein; NMR {Homo sapiens} PDB: 2ks1_A
Probab=49.95 E-value=2.6 Score=27.36 Aligned_cols=29 Identities=28% Similarity=0.422 Sum_probs=15.2
Q ss_pred eeeeechhhhHHHHHHhhhcceeeeeeccc
Q psy14481 32 VAMISGISFGALALVTLFGAVSFIMYRRYR 61 (179)
Q Consensus 32 ~~~i~g~~~~~~~i~~~~~~~~~~~yrr~~ 61 (179)
+.+|+|+..| +.++-+++.+-+++.|||.
T Consensus 11 ~~~Ia~~vVG-vll~vi~~l~~~~~~RRR~ 39 (44)
T 2jwa_A 11 LTSIISAVVG-ILLVVVLGVVFGILIKRRQ 39 (44)
T ss_dssp HHHHHHHHHH-HHHHHHHHHHHHHHHHHHC
T ss_pred ccchHHHHHH-HHHHHHHHHHHHhheehhh
Confidence 4457788888 3344444444444444443
No 13
>1s7q_A H-2KB, H-2 class I histocompatibility antigen, K-B alpha chain; LCMV, MHC class I, immune escape, immune system; 1.99A {Mus musculus} SCOP: b.1.1.2 d.19.1.1 PDB: 1s7r_A 1s7s_A 1s7t_A 1bii_A 3qul_A 1s7v_A 1s7w_A 1s7x_A 3quk_A 1s7u_A 1nez_A*
Probab=37.66 E-value=5.5 Score=34.24 Aligned_cols=26 Identities=23% Similarity=0.199 Sum_probs=0.0
Q ss_pred eechhhhHHHHHH--hhh-cceeeeee-cc
Q psy14481 35 ISGISFGALALVT--LFG-AVSFIMYR-RY 60 (179)
Q Consensus 35 i~g~~~~~~~i~~--~~~-~~~~~~yr-r~ 60 (179)
|.||..|.++++. ++| .++|++|| |+
T Consensus 283 ~~~i~~~~~~l~~~~~~~~~~~~~~~~~k~ 312 (348)
T 1s7q_A 283 NMATVAVLVVLGAAIVTGAVVAFVMKMRRR 312 (348)
T ss_dssp ------------------------------
T ss_pred EEEEEeehhhHHHHhhheeEEEEEEEEEEe
Confidence 4455555433322 122 35788999 53
No 14
>2llm_A Amyloid beta A4 protein; alzheimer'S disease, protein fibril; NMR {Homo sapiens} PDB: 2loh_A
Probab=39.01 E-value=9.2 Score=24.76 Aligned_cols=28 Identities=18% Similarity=0.426 Sum_probs=17.0
Q ss_pred eeeeechhhhHHHHHHhhhcceeeeeecc
Q psy14481 32 VAMISGISFGALALVTLFGAVSFIMYRRY 60 (179)
Q Consensus 32 ~~~i~g~~~~~~~i~~~~~~~~~~~yrr~ 60 (179)
-+++.|..+++++|.+.+.. +.++.|||
T Consensus 16 rga~iGL~v~gVai~~vIVv-sl~mlRrr 43 (43)
T 2llm_A 16 KGAIIGLMVGGVVIATVIVI-TLVMLKKK 43 (43)
Confidence 44557777777777766554 34444543
No 15
>2gle_A Neurabin-1; SAM domain, scaffold, protein protein interaction, protein binding; NMR {Rattus norvegicus}
Probab=26.68 E-value=50 Score=21.70 Aligned_cols=43 Identities=21% Similarity=0.285 Sum_probs=30.1
Q ss_pred CCCcee-eccCCChHHHHHhhcChHHHHHHHHHHHHHHHHHHHh
Q psy14481 130 AGKITG-MLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAK 172 (179)
Q Consensus 130 AgKITG-MLLEmd~sELL~mLes~e~L~~KV~EA~~vL~~~q~~ 172 (179)
...|+| .||.++..+|-.|==..-.-+.||-.|+.-|+....+
T Consensus 30 ~~~i~g~~Ll~l~~~dL~~lGI~~~g~r~kil~~i~~L~~~~ek 73 (74)
T 2gle_A 30 AQNISGEQLLQLDGNKLKALGMTSSQDRALVKKKLKEMKMSLEK 73 (74)
T ss_dssp TTTCCHHHHHTCCHHHHHTTTCCCHHHHHHHHHHHHSHHHHHHH
T ss_pred HcCCCHHHHhhCCHHHHHHcCCCCHHHHHHHHHHHHHHHHHhhc
Confidence 346777 6788998887666333334678888898888876554
No 16
>2lp1_A C99; alzheimer'S D membrane protein, transmembrane Pro; NMR {Homo sapiens}
Probab=30.87 E-value=15 Score=28.39 Aligned_cols=20 Identities=20% Similarity=0.360 Sum_probs=14.5
Q ss_pred eeeeechhhhHHHHHHhhhc
Q psy14481 32 VAMISGISFGALALVTLFGA 51 (179)
Q Consensus 32 ~~~i~g~~~~~~~i~~~~~~ 51 (179)
-+++-|.++++++|+.++..
T Consensus 29 ~~a~igL~v~~vai~~viVv 48 (122)
T 2lp1_A 29 KGAIIGLMVGGVVIATVIVI 48 (122)
Confidence 34567888888888877643
No 17
>1ash_A Hemoglobin (OXY); oxygen storage; HET: HEM; 2.15A {Ascaris suum} SCOP: a.1.1.2
Probab=22.29 E-value=1.2e+02 Score=23.21 Aligned_cols=54 Identities=17% Similarity=0.195 Sum_probs=38.0
Q ss_pred hHHHHHHhhhhhhhhHhhhCCCCCCCceeeccCCC--------------------hHHHHHhhcChHHHHHHHHH
Q psy14481 107 PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEID--------------------NAELLYMLEHNESLKSKVEE 161 (179)
Q Consensus 107 peeQKq~LGErLyplV~~l~p~~AgKITGMLLEmd--------------------~sELL~mLes~e~L~~KV~E 161 (179)
..+.+...|..+|-..-..+|+...--.+ .-+++ ...++..|+|++.|...|++
T Consensus 19 ~~~~~~~~g~~fy~~LF~~~Pe~r~~F~~-~~~~~~~d~~~s~~f~~q~~rl~~aL~~~i~~lDd~~~L~~~l~~ 92 (150)
T 1ash_A 19 TSNEARQDGIDLYKHMFENYPPLRKYFKS-REEYTAEDVQNDPFFAKQGQKILLACHVLCATYDDRETFNAYTRE 92 (150)
T ss_dssp SSHHHHHHHHHHHHHHHHHCGGGGGGSTT-TTTCCHHHHHHCHHHHHHHHHHHHHHHHHHHTTTSHHHHHHHHHH
T ss_pred CCchHHHHHHHHHHHHHHHChhHHHHhhh-cccCChhhhhcCHHHHHHHHHHHHHHHHHHHHCCCHHHHHHHHHH
Confidence 35678889999999999999997543332 11222 23456778888888887765
No 18
>2wx3_A MRNA-decapping enzyme 1A; structural protein, trimerization module, P-BODY component, asymmetric assembly; 2.31A {Homo sapiens}
Probab=21.63 E-value=45 Score=22.20 Aligned_cols=21 Identities=19% Similarity=0.379 Sum_probs=18.4
Q ss_pred HHHHHhhcChHHHHHHHHHHH
Q psy14481 143 AELLYMLEHNESLKSKVEEAV 163 (179)
Q Consensus 143 sELL~mLes~e~L~~KV~EA~ 163 (179)
.-|++||.+.+.+-.++.||+
T Consensus 18 qaLihLIqnD~~Fl~~IHeAY 38 (51)
T 2wx3_A 18 DTLIHLIKNDSSFLSTLHEVY 38 (51)
T ss_dssp HHHHHHHHHCHHHHHHHHHHH
T ss_pred HHHHHHHHcCHHHHHHHHHHH
Confidence 347899999999999999996
No 19
>2guz_B Mitochondrial import inner membrane translocase subunit TIM16; DNAJ-fold, chaperone, protein transport; HET: FLC; 2.00A {Saccharomyces cerevisiae}
Probab=20.64 E-value=85 Score=21.01 Aligned_cols=19 Identities=37% Similarity=0.268 Sum_probs=15.8
Q ss_pred HHHHHHHHHHHHHHHHHHh
Q psy14481 154 SLKSKVEEAVAVLQAHQAK 172 (179)
Q Consensus 154 ~L~~KV~EA~~vL~~~q~~ 172 (179)
-|.+||++|-+.|..+..+
T Consensus 44 yl~~ki~~Ake~l~~~~~~ 62 (65)
T 2guz_B 44 YLQSKVYRAAERLKWELAQ 62 (65)
T ss_dssp HHHHHHHHHHHHHHHHHHH
T ss_pred HHHHHHHHHHHHHHHHHHh
Confidence 6899999999999876443
No 20
>4ev6_A Magnesium transport protein CORA; membrane protein, ION transporter, metal TR; HET: UMQ; 3.20A {Methanocaldococcus jannaschii}
Probab=20.29 E-value=21 Score=30.09 Aligned_cols=22 Identities=23% Similarity=0.487 Sum_probs=14.2
Q ss_pred hHHHHHHhhhcceeeeeecccC
Q psy14481 41 GALALVTLFGAVSFIMYRRYRW 62 (179)
Q Consensus 41 ~~~~i~~~~~~~~~~~yrr~~~ 62 (179)
.++++..+++++.++++||++|
T Consensus 317 ~~l~~m~~~~~~~~~~fkrk~W 338 (339)
T 4ev6_A 317 LVMALMVVIIMIFVYIFRRSGW 338 (339)
T ss_dssp HHHHHHHHHHHHHHHHHHTTTC
T ss_pred HHHHHHHHHHHHHHHHHHHcCC
Confidence 3444555555666677888888
Done!