Your job contains 1 sequence.
>psy14481
MLDVAPPDSPRAHQAHAEDLSNPWSGEGGVNVAMISGISFGALALVTLFGAVSFIMYRRY
RWNKPQTLSDKCSNPDSSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFP
LIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAHQAKQAAVKKE
The BLAST search returned 5 gene products which did not match your query constraints. Please see the full BLAST report below for the details.
BLASTP 2.0MP-WashU [04-May-2006] [linux26-i686-ILP32F64 2006-05-09T11:47:08]
Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.
Reference: Gish, W. (1996-2006) http://blast.wustl.edu
Query= psy14481
(179 letters)
Database: go_20130330-seqdb.fasta
368,745 sequences; 169,044,731 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done
Smallest
Sum
High Probability
Sequences producing High-scoring Segment Pairs: Score P(N) N
ZFIN|ZDB-GENE-030131-9663 - symbol:pabpc4 "poly(A) bindin... 315 1.9e-27 1
UNIPROTKB|H0YAS6 - symbol:PABPC1 "Polyadenylate-binding p... 305 3.5e-27 1
UNIPROTKB|H0YB75 - symbol:PABPC1 "Polyadenylate-binding p... 305 3.5e-27 1
UNIPROTKB|E1C903 - symbol:PABPC4 "Uncharacterized protein... 312 4.0e-27 1
UNIPROTKB|F1NH82 - symbol:F1NH82 "Uncharacterized protein... 305 5.8e-27 1
ZFIN|ZDB-GENE-030131-3238 - symbol:pabpc1a "poly A bindin... 310 6.7e-27 1
ZFIN|ZDB-GENE-050308-1 - symbol:pabpc1b "poly A binding p... 310 6.7e-27 1
UNIPROTKB|H0Y6X6 - symbol:PABPC4 "Polyadenylate-binding p... 301 9.4e-27 1
RGD|1305015 - symbol:Pabpc4 "poly(A) binding protein, cyt... 301 9.4e-27 1
UNIPROTKB|P20965 - symbol:pabpc1-a "Polyadenylate-binding... 308 1.1e-26 1
UNIPROTKB|Q6IP09 - symbol:pabpc1-b "Polyadenylate-binding... 308 1.1e-26 1
UNIPROTKB|F1NH81 - symbol:PABPC1 "Uncharacterized protein... 305 1.7e-26 1
MGI|MGI:1349722 - symbol:Pabpc1 "poly(A) binding protein,... 306 1.8e-26 1
RGD|619838 - symbol:Pabpc1 "poly(A) binding protein, cyto... 306 1.8e-26 1
UNIPROTKB|E7EQV3 - symbol:PABPC1 "Polyadenylate-binding p... 305 1.9e-26 1
UNIPROTKB|E2RQC8 - symbol:PABPC1 "Uncharacterized protein... 305 1.9e-26 1
UNIPROTKB|E7ERJ7 - symbol:PABPC1 "Polyadenylate-binding p... 305 2.0e-26 1
UNIPROTKB|P61286 - symbol:PABPC1 "Polyadenylate-binding p... 305 2.3e-26 1
UNIPROTKB|J9P326 - symbol:PABPC1 "Uncharacterized protein... 305 2.3e-26 1
UNIPROTKB|P11940 - symbol:PABPC1 "Polyadenylate-binding p... 305 2.3e-26 1
UNIPROTKB|F2Z557 - symbol:PABPC1 "Uncharacterized protein... 305 2.3e-26 1
UNIPROTKB|Q5R8F7 - symbol:PABPC1 "Polyadenylate-binding p... 305 2.3e-26 1
UNIPROTKB|I3LS00 - symbol:PABPC1 "Uncharacterized protein... 305 2.5e-26 1
UNIPROTKB|D4AC21 - symbol:Pabpc4 "Protein Pabpc4" species... 301 5.0e-26 1
UNIPROTKB|B1ANR0 - symbol:PABPC4 "Polyadenylate-binding p... 301 5.8e-26 1
UNIPROTKB|E2R9I0 - symbol:PABPC4 "Uncharacterized protein... 301 6.2e-26 1
UNIPROTKB|F1SV06 - symbol:PABPC4 "Uncharacterized protein... 301 6.2e-26 1
UNIPROTKB|D4AC14 - symbol:Pabpc4 "Protein Pabpc4" species... 301 6.2e-26 1
UNIPROTKB|E2R9I1 - symbol:PABPC4 "Uncharacterized protein... 302 6.4e-26 1
UNIPROTKB|Q13310 - symbol:PABPC4 "Polyadenylate-binding p... 301 6.6e-26 1
UNIPROTKB|A4IFC3 - symbol:PABPC4 "Uncharacterized protein... 301 6.6e-26 1
UNIPROTKB|G3V9N0 - symbol:Pabpc4 "RCG31475, isoform CRA_a... 301 7.1e-26 1
UNIPROTKB|Q9H361 - symbol:PABPC3 "Polyadenylate-binding p... 292 5.9e-25 1
UNIPROTKB|E1BWJ7 - symbol:PABPC1L "Uncharacterized protei... 283 5.6e-24 1
UNIPROTKB|Q6DEY7 - symbol:epabp "Embryonic polyadenylate-... 278 1.9e-23 1
UNIPROTKB|Q98SP8 - symbol:epabp-a "Embryonic polyadenylat... 277 2.5e-23 1
UNIPROTKB|H0Y5F5 - symbol:PABPC4 "Polyadenylate-binding p... 273 4.7e-23 1
ZFIN|ZDB-GENE-030131-5836 - symbol:pabpc1l "poly(A) bindi... 274 5.1e-23 1
UNIPROTKB|Q6GR16 - symbol:epabp-b "Embryonic polyadenylat... 272 8.6e-23 1
UNIPROTKB|Q4VXT4 - symbol:PABPC1L "HCG2019100, isoform CR... 262 1.3e-22 1
UNIPROTKB|Q4VXT6 - symbol:PABPC1L "Polyadenylate-binding ... 255 7.0e-22 1
UNIPROTKB|E1BNB4 - symbol:PABPC1L "Uncharacterized protei... 263 7.8e-22 1
UNIPROTKB|H0Y386 - symbol:PABPC1L "Polyadenylate-binding ... 254 9.0e-22 1
UNIPROTKB|Q4VXU2 - symbol:PABPC1L "Polyadenylate-binding ... 262 9.8e-22 1
UNIPROTKB|Q4VXT5 - symbol:PABPC1L "Polyadenylate-binding ... 252 1.5e-21 1
UNIPROTKB|F1M0P4 - symbol:F1M0P4 "Uncharacterized protein... 243 1.3e-20 1
UNIPROTKB|E2RND1 - symbol:PABPC1L "Uncharacterized protei... 251 1.7e-20 1
UNIPROTKB|F1SDR6 - symbol:PABPC1L "Uncharacterized protei... 244 8.5e-20 1
UNIPROTKB|H0YAS7 - symbol:PABPC1 "Polyadenylate-binding p... 235 9.2e-20 1
RGD|1310759 - symbol:Pabpc2 "poly(A) binding protein, cyt... 243 1.2e-19 1
WB|WBGene00003902 - symbol:pab-1 species:6239 "Caenorhabd... 239 3.4e-19 1
UNIPROTKB|F1RKX5 - symbol:F1RKX5 "Uncharacterized protein... 227 6.5e-19 1
RGD|1311201 - symbol:Pabpc6 "poly(A) binding protein, cyt... 236 7.0e-19 1
WB|WBGene00003903 - symbol:pab-2 species:6239 "Caenorhabd... 229 4.6e-18 1
ASPGD|ASPL0000010999 - symbol:fabM species:162425 "Emeric... 213 2.6e-16 1
GENEDB_PFALCIPARUM|PFL1170w - symbol:PFL1170w "polyadenyl... 207 1.5e-15 1
UNIPROTKB|Q8I5H4 - symbol:PFL1170w "Polyadenylate-binding... 207 1.5e-15 1
RGD|1563142 - symbol:Pabpc1l "poly(A) binding protein, cy... 202 2.9e-15 1
UNIPROTKB|A4QUF0 - symbol:PAB1 "Polyadenylate-binding pro... 186 2.2e-13 1
TAIR|locus:2012161 - symbol:PAB8 "AT1G49760" species:3702... 183 3.8e-13 1
TAIR|locus:2199700 - symbol:PAB3 "poly(A) binding protein... 173 4.4e-12 1
TAIR|locus:2124261 - symbol:PAB2 "AT4G34110" species:3702... 164 3.8e-11 1
TAIR|locus:2058573 - symbol:PAB4 "AT2G23350" species:3702... 159 1.4e-10 1
UNIPROTKB|H0YER0 - symbol:PABPC4 "Polyadenylate-binding p... 148 1.5e-10 1
UNIPROTKB|K7GPI8 - symbol:LOC100738301 "Uncharacterized p... 140 6.6e-09 2
POMBASE|SPAC57A7.04c - symbol:pabp "mRNA export shuttling... 143 7.1e-09 1
TAIR|locus:2090654 - symbol:MPC "maternally expressed pab... 131 9.7e-09 1
RGD|621236 - symbol:Ubr5 "ubiquitin protein ligase E3 com... 143 1.1e-08 2
UNIPROTKB|Q62671 - symbol:Ubr5 "E3 ubiquitin-protein liga... 143 1.1e-08 2
UNIPROTKB|E7ET84 - symbol:UBR5 "E3 ubiquitin-protein liga... 140 1.1e-08 1
TAIR|locus:2040625 - symbol:PAB7 "poly(A) binding protein... 140 1.4e-08 1
ZFIN|ZDB-GENE-030131-6559 - symbol:ubr5 "ubiquitin protei... 138 1.4e-08 2
UNIPROTKB|J9P5M9 - symbol:UBR5 "Uncharacterized protein" ... 140 1.5e-08 2
UNIPROTKB|E7EMW7 - symbol:UBR5 "E3 ubiquitin-protein liga... 140 2.2e-08 2
UNIPROTKB|F1N0L2 - symbol:UBR5 "Uncharacterized protein" ... 140 2.2e-08 2
UNIPROTKB|F1PBF9 - symbol:UBR5 "Uncharacterized protein" ... 140 2.2e-08 2
UNIPROTKB|J3KMW7 - symbol:UBR5 "E3 ubiquitin-protein liga... 140 2.2e-08 2
UNIPROTKB|O95071 - symbol:UBR5 "E3 ubiquitin-protein liga... 140 2.2e-08 2
UNIPROTKB|I3LGM1 - symbol:LOC100738301 "Uncharacterized p... 140 2.6e-08 1
UNIPROTKB|F1P0U1 - symbol:Gga.55416 "Uncharacterized prot... 140 8.4e-08 1
MGI|MGI:1918040 - symbol:Ubr5 "ubiquitin protein ligase E... 140 8.4e-08 1
UNIPROTKB|Q4VXT8 - symbol:PABPC1L "Polyadenylate-binding ... 109 2.1e-06 1
CGD|CAL0001392 - symbol:orf19.3037 species:5476 "Candida ... 116 2.1e-05 1
UNIPROTKB|F2Z2Z0 - symbol:PABPC1L "Polyadenylate-binding ... 109 2.3e-05 1
DICTYBASE|DDB_G0293558 - symbol:pabpc1A "polyadenylate bi... 111 0.00017 1
FB|FBgn0002431 - symbol:hyd "hyperplastic discs" species:... 111 0.00090 2
>ZFIN|ZDB-GENE-030131-9663 [details] [associations]
symbol:pabpc4 "poly(A) binding protein,
cytoplasmic 4 (inducible form)" species:7955 "Danio rerio"
[GO:0000166 "nucleotide binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0003676 "nucleic acid binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
ZFIN:ZDB-GENE-030131-9663 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 eggNOG:COG0724 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:8761 OrthoDB:EOG4T1HM1
EMBL:BC053126 IPI:IPI00489290 RefSeq:NP_958453.1 UniGene:Dr.16284
ProteinModelPortal:Q7T3G5 SMR:Q7T3G5 STRING:Q7T3G5 PRIDE:Q7T3G5
GeneID:321035 KEGG:dre:321035 InParanoid:Q7T3G5 OMA:NGMEASA
NextBio:20807204 ArrayExpress:Q7T3G5 Bgee:Q7T3G5 Uniprot:Q7T3G5
Length = 637
Score = 315 (115.9 bits), Expect = 1.9e-27, P = 1.9e-27
Identities = 63/74 (85%), Positives = 70/74 (94%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 535 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLH 594
Query: 148 MLEHNESLKSKVEE 161
MLE +ESL+SKVEE
Sbjct: 595 MLESHESLRSKVEE 608
>UNIPROTKB|H0YAS6 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 SMART:SM00517
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AP001205
HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000520868
Uniprot:H0YAS6
Length = 169
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 69 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 128
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 129 MLESPESLRSKVDE 142
>UNIPROTKB|H0YB75 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0005737 "cytoplasm" evidence=IDA] InterPro:IPR002004
Pfam:PF00658 PROSITE:PS51309 SMART:SM00517 GO:GO:0005737
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AP001205
HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000522658 Bgee:H0YB75
Uniprot:H0YB75
Length = 183
Score = 305 (112.4 bits), Expect = 3.5e-27, P = 3.5e-27
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 83 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 142
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 143 MLESPESLRSKVDE 156
>UNIPROTKB|E1C903 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0005634 "nucleus" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] [GO:0008266 "poly(U) RNA binding"
evidence=IEA] [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 CTD:8761 OMA:XVVCDEN EMBL:AADN02043739
EMBL:AADN02043740 IPI:IPI00587440 RefSeq:XP_417821.2
UniGene:Gga.11375 ProteinModelPortal:E1C903 PRIDE:E1C903
Ensembl:ENSGALT00000006028 GeneID:419674 KEGG:gga:419674
NextBio:20822696 Uniprot:E1C903
Length = 630
Score = 312 (114.9 bits), Expect = 4.0e-27, P = 4.0e-27
Identities = 63/74 (85%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 532 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLH 591
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKVEE
Sbjct: 592 MLESPESLRSKVEE 605
>UNIPROTKB|F1NH82 [details] [associations]
symbol:F1NH82 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:AADN02025122
EMBL:AADN02025123 EMBL:AADN02025124 IPI:IPI00574035
Ensembl:ENSGALT00000023332 Uniprot:F1NH82
Length = 469
Score = 305 (112.4 bits), Expect = 5.8e-27, P = 5.8e-27
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 369 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLH 428
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 429 MLESPESLRSKVDE 442
>ZFIN|ZDB-GENE-030131-3238 [details] [associations]
symbol:pabpc1a "poly A binding protein,
cytoplasmic 1 a" species:7955 "Danio rerio" [GO:0003723 "RNA
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0007507 "heart development" evidence=IMP] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-3238 GO:GO:0007507
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 OrthoDB:EOG40ZQX5
EMBL:BC099992 IPI:IPI00485280 RefSeq:NP_001026846.1
UniGene:Dr.24504 ProteinModelPortal:Q499B6 SMR:Q499B6 STRING:Q499B6
GeneID:606498 KEGG:dre:606498 CTD:606498 InParanoid:Q499B6
NextBio:20892436 ArrayExpress:Q499B6 Uniprot:Q499B6
Length = 634
Score = 310 (114.2 bits), Expect = 6.7e-27, P = 6.7e-27
Identities = 62/74 (83%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 535 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLH 594
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 595 MLESPESLRSKVDE 608
>ZFIN|ZDB-GENE-050308-1 [details] [associations]
symbol:pabpc1b "poly A binding protein, cytoplasmic 1
b" species:7955 "Danio rerio" [GO:0003676 "nucleic acid binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-050308-1 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HSSP:P19339 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CU468682 EMBL:CU468824
EMBL:BC059662 EMBL:BC063948 IPI:IPI00493464 RefSeq:NP_957176.1
UniGene:Dr.99377 SMR:Q6P3L1 STRING:Q6P3L1
Ensembl:ENSDART00000032474 GeneID:393856 KEGG:dre:393856 CTD:393856
InParanoid:Q6P3L1 NextBio:20814840 Uniprot:Q6P3L1
Length = 634
Score = 310 (114.2 bits), Expect = 6.7e-27, P = 6.7e-27
Identities = 62/74 (83%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 534 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQNMHPSLAGKITGMLLEIDNSELLH 593
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 594 MLESPESLRSKVDE 607
>UNIPROTKB|H0Y6X6 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 SMART:SM00517
GO:GO:0003723 EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
ProteinModelPortal:H0Y6X6 PRIDE:H0Y6X6 Ensembl:ENST00000437136
Bgee:H0Y6X6 Uniprot:H0Y6X6
Length = 195
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 61/74 (82%), Positives = 68/74 (91%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+
Sbjct: 100 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 159
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 160 MLESPESLRSKVDE 173
>RGD|1305015 [details] [associations]
symbol:Pabpc4 "poly(A) binding protein, cytoplasmic 4"
species:10116 "Rattus norvegicus" [GO:0005634 "nucleus"
evidence=ISO] [GO:0005737 "cytoplasm" evidence=ISO] [GO:0008143
"poly(A) RNA binding" evidence=ISO] [GO:0008266 "poly(U) RNA
binding" evidence=ISO] [GO:0010494 "cytoplasmic stress granule"
evidence=ISO] [GO:0030529 "ribonucleoprotein complex" evidence=ISO]
[GO:0017130 "poly(C) RNA binding" evidence=ISO] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:1305015 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 HOVERGEN:HBG002295 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:BC088337 IPI:IPI00780433 UniGene:Rn.201330
ProteinModelPortal:Q5I0G7 PRIDE:Q5I0G7 UCSC:RGD:1305015
InParanoid:Q5I0G7 ArrayExpress:Q5I0G7 Genevestigator:Q5I0G7
Uniprot:Q5I0G7
Length = 415
Score = 301 (111.0 bits), Expect = 9.4e-27, P = 9.4e-27
Identities = 61/74 (82%), Positives = 68/74 (91%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+
Sbjct: 316 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 375
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 376 MLESPESLRSKVDE 389
>UNIPROTKB|P20965 [details] [associations]
symbol:pabpc1-a "Polyadenylate-binding protein 1-A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005844 "polysome" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0048255 GO:GO:0005844 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:M27072 EMBL:X57483
EMBL:BC052100 PIR:A32323 RefSeq:NP_001080204.1 UniGene:Xl.35547
ProteinModelPortal:P20965 SMR:P20965 PRIDE:P20965 GeneID:379896
KEGG:xla:379896 CTD:379896 Xenbase:XB-GENE-963463 Uniprot:P20965
Length = 633
Score = 308 (113.5 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 62/74 (83%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 534 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 593
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 594 MLESPESLRSKVDE 607
>UNIPROTKB|Q6IP09 [details] [associations]
symbol:pabpc1-b "Polyadenylate-binding protein 1-B"
species:8355 "Xenopus laevis" [GO:0005844 "polysome" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043621
"protein self-association" evidence=ISS] [GO:0048255 "mRNA
stabilization" evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0006417 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0005844
GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC072110 EMBL:BC108462 RefSeq:NP_001085069.1
UniGene:Xl.60751 ProteinModelPortal:Q6IP09 SMR:Q6IP09 PRIDE:Q6IP09
GeneID:432140 KEGG:xla:432140 CTD:432140 Xenbase:XB-GENE-6255999
Uniprot:Q6IP09
Length = 633
Score = 308 (113.5 bits), Expect = 1.1e-26, P = 1.1e-26
Identities = 62/74 (83%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 534 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 593
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 594 MLESPESLRSKVDE 607
>UNIPROTKB|F1NH81 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
EMBL:AADN02025122 IPI:IPI00578358 Ensembl:ENSGALT00000023333
Uniprot:F1NH81
Length = 573
Score = 305 (112.4 bits), Expect = 1.7e-26, P = 1.7e-26
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 473 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQSMHPTLAGKITGMLLEIDNSELLH 532
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 533 MLESPESLRSKVDE 546
>MGI|MGI:1349722 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10090 "Mus musculus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003676
"nucleic acid binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003729 "mRNA binding" evidence=ISO] [GO:0005515
"protein binding" evidence=IPI] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO] [GO:0071013 "catalytic step 2 spliceosome"
evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
MGI:MGI:1349722 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166
GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 EMBL:CH466541 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 ChiTaRS:PABPC1 EMBL:X65553 EMBL:AK044829
EMBL:AK133196 EMBL:AK159703 EMBL:AK159733 EMBL:AK160968
EMBL:AK161123 EMBL:AK161671 EMBL:AK168466 EMBL:BC003870
EMBL:BC011207 EMBL:BC023145 EMBL:BC046233 IPI:IPI00124287
PIR:I48718 RefSeq:NP_032800.2 UniGene:Mm.371570
ProteinModelPortal:P29341 SMR:P29341 DIP:DIP-32127N IntAct:P29341
STRING:P29341 PhosphoSite:P29341 REPRODUCTION-2DPAGE:P29341
PaxDb:P29341 PRIDE:P29341 Ensembl:ENSMUST00000001809 GeneID:18458
KEGG:mmu:18458 InParanoid:Q99L36 NextBio:294152 Bgee:P29341
CleanEx:MM_PABPC1 Genevestigator:P29341
GermOnline:ENSMUSG00000022283 Uniprot:P29341
Length = 636
Score = 306 (112.8 bits), Expect = 1.8e-26, P = 1.8e-26
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLH 595
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 596 MLESPESLRSKVDE 609
>RGD|619838 [details] [associations]
symbol:Pabpc1 "poly(A) binding protein, cytoplasmic 1"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0003729 "mRNA
binding" evidence=IDA] [GO:0005634 "nucleus" evidence=ISO]
[GO:0005681 "spliceosomal complex" evidence=IEA] [GO:0005737
"cytoplasm" evidence=ISO] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0008022 "protein C-terminus binding"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=ISO;ISS]
[GO:0008380 "RNA splicing" evidence=IEA] [GO:0010494 "cytoplasmic
stress granule" evidence=ISO;ISS] [GO:0030529 "ribonucleoprotein
complex" evidence=ISO;ISS] [GO:0071013 "catalytic step 2
spliceosome" evidence=ISO] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISO;ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
RGD:619838 GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0010494 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
GO:GO:2000623 EMBL:AJ298278 EMBL:BC083176 IPI:IPI00189074
RefSeq:NP_599180.1 UniGene:Rn.127813 UniGene:Rn.29024
ProteinModelPortal:Q9EPH8 SMR:Q9EPH8 IntAct:Q9EPH8
MINT:MINT-4576919 STRING:Q9EPH8 PhosphoSite:Q9EPH8 PRIDE:Q9EPH8
Ensembl:ENSRNOT00000012775 GeneID:171350 KEGG:rno:171350
UCSC:RGD:619838 InParanoid:Q9EPH8 NextBio:622119
Genevestigator:Q9EPH8 GermOnline:ENSRNOG00000008639 Uniprot:Q9EPH8
Length = 636
Score = 306 (112.8 bits), Expect = 1.8e-26, P = 1.8e-26
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPSLAGKITGMLLEIDNSELLH 595
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 596 MLESPESLRSKVDE 609
>UNIPROTKB|E7EQV3 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00977833
ProteinModelPortal:E7EQV3 SMR:E7EQV3 Ensembl:ENST00000519004
ArrayExpress:E7EQV3 Bgee:E7EQV3 Uniprot:E7EQV3
Length = 591
Score = 305 (112.4 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 491 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 550
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 551 MLESPESLRSKVDE 564
>UNIPROTKB|E2RQC8 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:AAEX03008681
ProteinModelPortal:E2RQC8 PRIDE:E2RQC8 Ensembl:ENSCAFT00000000885
NextBio:20898275 Uniprot:E2RQC8
Length = 596
Score = 305 (112.4 bits), Expect = 1.9e-26, P = 1.9e-26
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 496 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 555
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 556 MLESPESLRSKVDE 569
>UNIPROTKB|E7ERJ7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AP001205 HGNC:HGNC:8554 ChiTaRS:PABPC1 IPI:IPI00909378
ProteinModelPortal:E7ERJ7 SMR:E7ERJ7 PRIDE:E7ERJ7
Ensembl:ENST00000522387 UCSC:uc011lhc.1 ArrayExpress:E7ERJ7
Bgee:E7ERJ7 Uniprot:E7ERJ7
Length = 604
Score = 305 (112.4 bits), Expect = 2.0e-26, P = 2.0e-26
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 504 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 563
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 564 MLESPESLRSKVDE 577
>UNIPROTKB|P61286 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9913 "Bos taurus" [GO:0005515 "protein binding"
evidence=IPI] [GO:0010494 "cytoplasmic stress granule"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:0071013 "catalytic step 2 spliceosome"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IEA]
[GO:0008022 "protein C-terminus binding" evidence=IEA] [GO:0008380
"RNA splicing" evidence=IEA] [GO:0006397 "mRNA processing"
evidence=IEA] [GO:0000184 "nuclear-transcribed mRNA catabolic
process, nonsense-mediated decay" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000184 GO:GO:0008380
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0071013
GO:GO:0010494 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AJ401269 EMBL:BC102365 IPI:IPI00705440 RefSeq:NP_776993.1
UniGene:Bt.53579 ProteinModelPortal:P61286 SMR:P61286 PRIDE:P61286
Ensembl:ENSBTAT00000064237 GeneID:282296 KEGG:bta:282296 CTD:26986
GeneTree:ENSGT00640000091232 OMA:TITSAKX OrthoDB:EOG40ZQX5
BindingDB:P61286 NextBio:20806097 GO:GO:2000623 Uniprot:P61286
Length = 636
Score = 305 (112.4 bits), Expect = 2.3e-26, P = 2.3e-26
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 595
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 596 MLESPESLRSKVDE 609
>UNIPROTKB|J9P326 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
OMA:TITSAKX EMBL:AAEX03008681 RefSeq:XP_856708.1
ProteinModelPortal:J9P326 Ensembl:ENSCAFT00000042991 GeneID:612751
KEGG:cfa:612751 Uniprot:J9P326
Length = 636
Score = 305 (112.4 bits), Expect = 2.3e-26, P = 2.3e-26
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 595
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 596 MLESPESLRSKVDE 609
>UNIPROTKB|P11940 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0008143 "poly(A) RNA binding" evidence=IDA;TAS]
[GO:0006378 "mRNA polyadenylation" evidence=TAS] [GO:0005737
"cytoplasm" evidence=IDA;TAS] [GO:0048255 "mRNA stabilization"
evidence=TAS] [GO:0008494 "translation activator activity"
evidence=TAS] [GO:0005515 "protein binding" evidence=IPI]
[GO:0008022 "protein C-terminus binding" evidence=IPI] [GO:0071013
"catalytic step 2 spliceosome" evidence=IDA] [GO:0030529
"ribonucleoprotein complex" evidence=IDA] [GO:0000398 "mRNA
splicing, via spliceosome" evidence=IC] [GO:2000623 "negative
regulation of nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=IDA] [GO:0010494 "cytoplasmic
stress granule" evidence=IDA] [GO:0005634 "nucleus" evidence=IDA]
[GO:0000184 "nuclear-transcribed mRNA catabolic process,
nonsense-mediated decay" evidence=TAS] [GO:0000288
"nuclear-transcribed mRNA catabolic process,
deadenylation-dependent decay" evidence=TAS] [GO:0000289
"nuclear-transcribed mRNA poly(A) tail shortening" evidence=TAS]
[GO:0005829 "cytosol" evidence=TAS] [GO:0006412 "translation"
evidence=TAS] [GO:0006413 "translational initiation" evidence=TAS]
[GO:0010467 "gene expression" evidence=TAS] [GO:0016070 "RNA
metabolic process" evidence=TAS] [GO:0016071 "mRNA metabolic
process" evidence=TAS] [GO:0044267 "cellular protein metabolic
process" evidence=TAS] [GO:0045727 "positive regulation of
translation" evidence=TAS] Reactome:REACT_71 Reactome:REACT_21257
Reactome:REACT_17015 InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 GO:GO:0000184 GO:GO:0000166 GO:GO:0006413
Gene3D:3.30.70.330 GO:GO:0006378 GO:GO:0008494 GO:GO:0048255
GO:GO:0000398 GO:GO:0071013 PDB:3KTR PDBsum:3KTR GO:GO:0010494
eggNOG:COG0724 GO:GO:0000289 GO:GO:0008143 HOVERGEN:HBG002295
Reactome:REACT_1762 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 PDB:3KUI PDBsum:3KUI
PDB:2RQG PDB:2RQH PDBsum:2RQG PDBsum:2RQH PDB:3KUJ PDBsum:3KUJ
PDB:4F02 PDBsum:4F02 PDB:3PTH PDBsum:3PTH PDB:3PKN PDBsum:3PKN
CTD:26986 OMA:TITSAKX OrthoDB:EOG40ZQX5 GO:GO:2000623 EMBL:Y00345
EMBL:U68104 EMBL:U68093 EMBL:U68094 EMBL:U68095 EMBL:U68097
EMBL:U68098 EMBL:U68099 EMBL:U68100 EMBL:U68101 EMBL:U68102
EMBL:U68103 EMBL:AP001205 EMBL:BC015958 EMBL:BC023520 EMBL:Z48501
IPI:IPI00008524 IPI:IPI00410017 PIR:A93668 PIR:S52491
RefSeq:NP_002559.2 UniGene:Hs.387804 PDB:1CVJ PDB:1G9L PDB:1JGN
PDB:1JH4 PDB:2K8G PDB:2X04 PDB:3KTP PDB:3KUR PDB:3KUS PDB:3KUT
PDB:4F25 PDB:4F26 PDBsum:1CVJ PDBsum:1G9L PDBsum:1JGN PDBsum:1JH4
PDBsum:2K8G PDBsum:2X04 PDBsum:3KTP PDBsum:3KUR PDBsum:3KUS
PDBsum:3KUT PDBsum:4F25 PDBsum:4F26 ProteinModelPortal:P11940
SMR:P11940 DIP:DIP-31613N IntAct:P11940 MINT:MINT-96210
STRING:P11940 PhosphoSite:P11940 DMDM:3183544 PaxDb:P11940
PRIDE:P11940 DNASU:26986 Ensembl:ENST00000318607 GeneID:26986
KEGG:hsa:26986 UCSC:uc003yjs.1 GeneCards:GC08M101715 HGNC:HGNC:8554
HPA:CAB011536 HPA:HPA045423 MIM:604679 neXtProt:NX_P11940
PharmGKB:PA32880 InParanoid:P11940 PhylomeDB:P11940
BindingDB:P11940 ChEMBL:CHEMBL1293286 ChiTaRS:PABPC1
EvolutionaryTrace:P11940 GenomeRNAi:26986 NextBio:49454
PMAP-CutDB:P11940 ArrayExpress:P11940 Bgee:P11940 CleanEx:HS_PABPC1
Genevestigator:P11940 GermOnline:ENSG00000070756 Uniprot:P11940
Length = 636
Score = 305 (112.4 bits), Expect = 2.3e-26, P = 2.3e-26
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 595
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 596 MLESPESLRSKVDE 609
>UNIPROTKB|F2Z557 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:26986 GeneTree:ENSGT00640000091232
EMBL:CU302394 RefSeq:XP_001927782.1 UniGene:Ssc.41568
ProteinModelPortal:F2Z557 SMR:F2Z557 PRIDE:F2Z557
Ensembl:ENSSSCT00000006652 GeneID:100153958 KEGG:ssc:100153958
Uniprot:F2Z557
Length = 636
Score = 305 (112.4 bits), Expect = 2.3e-26, P = 2.3e-26
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 595
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 596 MLESPESLRSKVDE 609
>UNIPROTKB|Q5R8F7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9601 "Pongo abelii" [GO:0010494 "cytoplasmic stress
granule" evidence=ISS] [GO:0030529 "ribonucleoprotein complex"
evidence=ISS] [GO:2000623 "negative regulation of
nuclear-transcribed mRNA catabolic process, nonsense-mediated
decay" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000184 GO:GO:0008380 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0005681 GO:GO:0003723 GO:GO:0010494
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HSSP:P11940 GO:GO:2000623 EMBL:CR859795
RefSeq:NP_001128842.1 UniGene:Pab.18910 ProteinModelPortal:Q5R8F7
SMR:Q5R8F7 PRIDE:Q5R8F7 GeneID:100189758 KEGG:pon:100189758
InParanoid:Q5R8F7 Uniprot:Q5R8F7
Length = 636
Score = 305 (112.4 bits), Expect = 2.3e-26, P = 2.3e-26
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 536 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 595
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 596 MLESPESLRSKVDE 609
>UNIPROTKB|I3LS00 [details] [associations]
symbol:PABPC1 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:2000623 "negative regulation of nuclear-transcribed
mRNA catabolic process, nonsense-mediated decay" evidence=IEA]
[GO:0071013 "catalytic step 2 spliceosome" evidence=IEA]
[GO:0010494 "cytoplasmic stress granule" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0008022 "protein C-terminus
binding" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:TITSAKX
GO:GO:2000623 EMBL:CU302394 Ensembl:ENSSSCT00000032533
Uniprot:I3LS00
Length = 647
Score = 305 (112.4 bits), Expect = 2.5e-26, P = 2.5e-26
Identities = 61/74 (82%), Positives = 69/74 (93%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 547 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 606
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 607 MLESPESLRSKVDE 620
>UNIPROTKB|D4AC21 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00365233
ProteinModelPortal:D4AC21 Ensembl:ENSRNOT00000021032
ArrayExpress:D4AC21 Uniprot:D4AC21
Length = 588
Score = 301 (111.0 bits), Expect = 5.0e-26, P = 5.0e-26
Identities = 61/74 (82%), Positives = 68/74 (91%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+
Sbjct: 489 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 548
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 549 MLESPESLRSKVDE 562
>UNIPROTKB|B1ANR0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0000166
EMBL:CH471059 Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AL365277
HOVERGEN:HBG002295 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AL845289
UniGene:Hs.169900 HGNC:HGNC:8557 ChiTaRS:PABPC4 IPI:IPI00642944
SMR:B1ANR0 STRING:B1ANR0 Ensembl:ENST00000372862 Uniprot:B1ANR0
Length = 615
Score = 301 (111.0 bits), Expect = 5.8e-26, P = 5.8e-26
Identities = 61/74 (82%), Positives = 68/74 (91%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+
Sbjct: 516 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 575
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 576 MLESPESLRSKVDE 589
>UNIPROTKB|E2R9I0 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0010494 "cytoplasmic stress granule"
evidence=IEA] [GO:0008266 "poly(U) RNA binding" evidence=IEA]
[GO:0008143 "poly(A) RNA binding" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000166 "nucleotide binding"
evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0010494 GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:AAEX03009572 ProteinModelPortal:E2R9I0
Ensembl:ENSCAFT00000004950 Uniprot:E2R9I0
Length = 631
Score = 301 (111.0 bits), Expect = 6.2e-26, P = 6.2e-26
Identities = 61/74 (82%), Positives = 68/74 (91%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+
Sbjct: 532 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 591
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 592 MLESPESLRSKVDE 605
>UNIPROTKB|F1SV06 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:XVVCDEN
EMBL:CR956622 Ensembl:ENSSSCT00000004056 Uniprot:F1SV06
Length = 631
Score = 301 (111.0 bits), Expect = 6.2e-26, P = 6.2e-26
Identities = 61/74 (82%), Positives = 68/74 (91%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+
Sbjct: 532 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 591
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 592 MLESPESLRSKVDE 605
>UNIPROTKB|D4AC14 [details] [associations]
symbol:Pabpc4 "Protein Pabpc4" species:10116 "Rattus
norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 IPI:IPI00204295 PRIDE:D4AC14
Ensembl:ENSRNOT00000021045 ArrayExpress:D4AC14 Uniprot:D4AC14
Length = 631
Score = 301 (111.0 bits), Expect = 6.2e-26, P = 6.2e-26
Identities = 61/74 (82%), Positives = 68/74 (91%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+
Sbjct: 532 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 591
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 592 MLESPESLRSKVDE 605
>UNIPROTKB|E2R9I1 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0046983 "protein dimerization activity"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR011598
InterPro:IPR012677 Pfam:PF00010 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS50888 PROSITE:PS51309 SMART:SM00353
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:4.10.280.10 SUPFAM:SSF47459
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GeneTree:ENSGT00640000091232 EMBL:AAEX03009572
Ensembl:ENSCAFT00000004949 Uniprot:E2R9I1
Length = 700
Score = 302 (111.4 bits), Expect = 6.4e-26, P = 6.4e-26
Identities = 74/158 (46%), Positives = 94/158 (59%)
Query: 6 PPDSPRAHQAHAEDLSNPWSGEGGVNVAMISGISFGAL--ALVTLFGAVSFIMYRRYRWN 63
P + R + L+ + G G + G G + A+ TL + + R
Sbjct: 518 PTTAQRVGSECPDRLAMDFGGAGAAQQGLTDGCQSGGVPTAVQTLAPRAA-VAAAAPRAV 576
Query: 64 KPQTLSDKCSNPDSSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQ 123
P + +P + + AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ
Sbjct: 577 APYKYASSVRSPHPAIQPLQAPQPAVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQ 636
Query: 124 RMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 637 TMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 674
>UNIPROTKB|Q13310 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0030529 "ribonucleoprotein complex" evidence=IDA]
[GO:0005634 "nucleus" evidence=IDA] [GO:0005737 "cytoplasm"
evidence=IDA] [GO:0008143 "poly(A) RNA binding" evidence=IDA]
[GO:0008266 "poly(U) RNA binding" evidence=IDA] [GO:0010494
"cytoplasmic stress granule" evidence=IDA] [GO:0017130 "poly(C) RNA
binding" evidence=IDA] [GO:0006401 "RNA catabolic process"
evidence=TAS] [GO:0006396 "RNA processing" evidence=TAS]
[GO:0006412 "translation" evidence=TAS] [GO:0007596 "blood
coagulation" evidence=TAS] [GO:0005515 "protein binding"
evidence=IPI] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0008266 GO:GO:0000166 EMBL:CH471059
GO:GO:0006412 GO:GO:0007596 Gene3D:3.30.70.330 GO:GO:0006401
GO:GO:0006396 GO:GO:0010494 EMBL:AL365277 eggNOG:COG0724
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:U33818
EMBL:U75686 EMBL:AL845289 EMBL:BC065540 EMBL:BC094755
IPI:IPI00012726 IPI:IPI00555747 IPI:IPI00642904
RefSeq:NP_001129125.1 RefSeq:NP_001129126.1 RefSeq:NP_003810.1
UniGene:Hs.169900 ProteinModelPortal:Q13310 SMR:Q13310
IntAct:Q13310 MINT:MINT-1189867 STRING:Q13310 PhosphoSite:Q13310
DMDM:12229875 PaxDb:Q13310 PRIDE:Q13310 Ensembl:ENST00000372856
Ensembl:ENST00000372857 Ensembl:ENST00000372858 GeneID:8761
KEGG:hsa:8761 UCSC:uc001cdm.2 UCSC:uc010oiv.1 CTD:8761
GeneCards:GC01M040026 HGNC:HGNC:8557 HPA:HPA027301 MIM:603407
neXtProt:NX_Q13310 PharmGKB:PA32883 OMA:XVVCDEN OrthoDB:EOG4T1HM1
PhylomeDB:Q13310 ChEMBL:CHEMBL5333 ChiTaRS:PABPC4 GenomeRNAi:8761
NextBio:32864 ArrayExpress:Q13310 Bgee:Q13310 CleanEx:HS_PABPC4
Genevestigator:Q13310 GermOnline:ENSG00000090621 Uniprot:Q13310
Length = 644
Score = 301 (111.0 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 61/74 (82%), Positives = 68/74 (91%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+
Sbjct: 545 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 604
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 605 MLESPESLRSKVDE 618
>UNIPROTKB|A4IFC3 [details] [associations]
symbol:PABPC4 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0010494 "cytoplasmic stress granule" evidence=IEA]
[GO:0008266 "poly(U) RNA binding" evidence=IEA] [GO:0008143
"poly(A) RNA binding" evidence=IEA] [GO:0005634 "nucleus"
evidence=IEA] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0008266 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0010494
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 GeneTree:ENSGT00640000091232 CTD:8761
OMA:XVVCDEN OrthoDB:EOG4T1HM1 EMBL:DAAA02009142 EMBL:BC134509
IPI:IPI00689745 RefSeq:NP_001077193.1 UniGene:Bt.11192 SMR:A4IFC3
Ensembl:ENSBTAT00000022761 GeneID:534576 KEGG:bta:534576
InParanoid:A4IFC3 NextBio:20876450 Uniprot:A4IFC3
Length = 645
Score = 301 (111.0 bits), Expect = 6.6e-26, P = 6.6e-26
Identities = 61/74 (82%), Positives = 68/74 (91%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+
Sbjct: 546 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 605
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 606 MLESPESLRSKVDE 619
>UNIPROTKB|G3V9N0 [details] [associations]
symbol:Pabpc4 "RCG31475, isoform CRA_a" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:CH473968 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AC114512 GeneTree:ENSGT00640000091232
OMA:XVVCDEN PRIDE:G3V9N0 Ensembl:ENSRNOT00000056592 Uniprot:G3V9N0
Length = 660
Score = 301 (111.0 bits), Expect = 7.1e-26, P = 7.1e-26
Identities = 61/74 (82%), Positives = 68/74 (91%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEIDN+ELL+
Sbjct: 561 AVHVQGQEPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEIDNSELLH 620
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 621 MLESPESLRSKVDE 634
>UNIPROTKB|Q9H361 [details] [associations]
symbol:PABPC3 "Polyadenylate-binding protein 3"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0005737 "cytoplasm" evidence=IDA;NAS] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0016071 "mRNA metabolic
process" evidence=NAS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0016071 GO:GO:0000166 Gene3D:3.30.70.330
eggNOG:COG0724 GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HPA:HPA045423 EMBL:AF132026 EMBL:AL136900
EMBL:BC027617 IPI:IPI00301154 RefSeq:NP_112241.2 UniGene:Hs.458280
PDB:2D9P PDBsum:2D9P ProteinModelPortal:Q9H361 SMR:Q9H361
IntAct:Q9H361 STRING:Q9H361 PhosphoSite:Q9H361 DMDM:28201852
PaxDb:Q9H361 PRIDE:Q9H361 DNASU:5042 Ensembl:ENST00000281589
GeneID:5042 KEGG:hsa:5042 UCSC:uc001upy.3 CTD:5042
GeneCards:GC13P025670 HGNC:HGNC:8556 MIM:604680 neXtProt:NX_Q9H361
PharmGKB:PA32882 InParanoid:Q9H361 OMA:RTVPRYK OrthoDB:EOG4KH2TN
PhylomeDB:Q9H361 EvolutionaryTrace:Q9H361 GenomeRNAi:5042
NextBio:19414 ArrayExpress:Q9H361 Bgee:Q9H361 CleanEx:HS_PABPC3
Genevestigator:Q9H361 GermOnline:ENSG00000151846 Uniprot:Q9H361
Length = 631
Score = 292 (107.8 bits), Expect = 5.9e-25, P = 5.9e-25
Identities = 59/74 (79%), Positives = 67/74 (90%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQE LT++ LA+A PQ+QKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELLY
Sbjct: 531 AVHVQGQETLTASRLASAPPQKQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLY 590
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 591 MLESPESLRSKVDE 604
>UNIPROTKB|E1BWJ7 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 GeneTree:ENSGT00640000091232
EMBL:AADN02019326 EMBL:AADN02019327 IPI:IPI00570679
RefSeq:XP_417367.2 ProteinModelPortal:E1BWJ7
Ensembl:ENSGALT00000006565 GeneID:419189 KEGG:gga:419189
OMA:QTISARV NextBio:20822287 Uniprot:E1BWJ7
Length = 632
Score = 283 (104.7 bits), Expect = 5.6e-24, P = 5.6e-24
Identities = 56/74 (75%), Positives = 65/74 (87%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVH+QGQEPLT++MLAAA PQEQKQM+GERL+PLI M+ LAGKITGMLLEIDN+ELL
Sbjct: 535 AVHIQGQEPLTASMLAAAPPQEQKQMIGERLYPLIHAMHASLAGKITGMLLEIDNSELLL 594
Query: 148 MLEHNESLKSKVEE 161
+LE ESL SK+EE
Sbjct: 595 LLESPESLHSKIEE 608
>UNIPROTKB|Q6DEY7 [details] [associations]
symbol:epabp "Embryonic polyadenylate-binding protein"
species:8364 "Xenopus (Silurana) tropicalis" [GO:0005737
"cytoplasm" evidence=ISS] [GO:0008143 "poly(A) RNA binding"
evidence=ISS] [GO:0031370 "eukaryotic initiation factor 4G binding"
evidence=ISS] [GO:0043009 "chordate embryonic development"
evidence=ISS] [GO:0043621 "protein self-association" evidence=ISS]
[GO:0048255 "mRNA stabilization" evidence=ISS] [GO:0060212
"negative regulation of nuclear-transcribed mRNA poly(A) tail
shortening" evidence=ISS] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 GO:GO:0006412 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0043621 GO:GO:0048255 GO:GO:0043009
eggNOG:COG0724 GO:GO:0060212 GO:GO:0008143 HOVERGEN:HBG002295
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
GO:GO:0031370 EMBL:BC076956 RefSeq:NP_001005062.1 UniGene:Str.8393
ProteinModelPortal:Q6DEY7 SMR:Q6DEY7 STRING:Q6DEY7 PRIDE:Q6DEY7
GeneID:448615 KEGG:xtr:448615 CTD:80336 Xenbase:XB-GENE-5742459
HOGENOM:HOG000217922 InParanoid:Q6DEY7 OrthoDB:EOG4K6G3V
Uniprot:Q6DEY7
Length = 629
Score = 278 (102.9 bits), Expect = 1.9e-23, P = 1.9e-23
Identities = 57/74 (77%), Positives = 65/74 (87%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AV +QGQEPLT++ LA+A PQEQKQMLGERL+PLI M+P LAGKITGMLLEIDN+ELL+
Sbjct: 533 AVLMQGQEPLTASSLASAPPQEQKQMLGERLYPLIHEMHPTLAGKITGMLLEIDNSELLH 592
Query: 148 MLEHNESLKSKVEE 161
MLE ESL SKVEE
Sbjct: 593 MLESPESLHSKVEE 606
>UNIPROTKB|Q98SP8 [details] [associations]
symbol:epabp-a "Embryonic polyadenylate-binding protein A"
species:8355 "Xenopus laevis" [GO:0005515 "protein binding"
evidence=IPI] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0008143
"poly(A) RNA binding" evidence=IDA] [GO:0031370 "eukaryotic
initiation factor 4G binding" evidence=IPI] [GO:0043009 "chordate
embryonic development" evidence=IEP] [GO:0043621 "protein
self-association" evidence=IPI] [GO:0048255 "mRNA stabilization"
evidence=IDA] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=IDA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0048255 GO:GO:0043009 GO:GO:0060212 GO:GO:0008143
HOVERGEN:HBG002295 EMBL:AF338225 EMBL:BC080020
RefSeq:NP_001082094.1 UniGene:Xl.777 ProteinModelPortal:Q98SP8
SMR:Q98SP8 PRIDE:Q98SP8 GeneID:398221 KEGG:xla:398221 CTD:398221
Xenbase:XB-GENE-5742498 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 Uniprot:Q98SP8
Length = 629
Score = 277 (102.6 bits), Expect = 2.5e-23, P = 2.5e-23
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 77 SSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGM 136
SS ++ AV +QGQEPLT+++LA A PQEQKQMLGER++P+I M+P LAGKITGM
Sbjct: 522 SSTHLQQVMEPAVLMQGQEPLTASLLAGAPPQEQKQMLGERIYPVIHEMHPTLAGKITGM 581
Query: 137 LLEIDNAELLYMLEHNESLKSKVEE 161
LLEIDN+ELL+MLE ESL SKVEE
Sbjct: 582 LLEIDNSELLHMLESPESLHSKVEE 606
>UNIPROTKB|H0Y5F5 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IDA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005737 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 EMBL:AL845289 HGNC:HGNC:8557 ChiTaRS:PABPC4
Ensembl:ENST00000421687 Uniprot:H0Y5F5
Length = 550
Score = 273 (101.2 bits), Expect = 4.7e-23, P = 4.7e-23
Identities = 57/80 (71%), Positives = 69/80 (86%)
Query: 84 STLRAVH--VQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEID 141
S++R+ H +Q +PLT++MLAAA PQEQKQMLGERLFPLIQ M+ LAGKITGMLLEID
Sbjct: 445 SSVRSPHPAIQPLQPLTASMLAAAPPQEQKQMLGERLFPLIQTMHSNLAGKITGMLLEID 504
Query: 142 NAELLYMLEHNESLKSKVEE 161
N+ELL+MLE ESL+SKV+E
Sbjct: 505 NSELLHMLESPESLRSKVDE 524
>ZFIN|ZDB-GENE-030131-5836 [details] [associations]
symbol:pabpc1l "poly(A) binding protein,
cytoplasmic 1-like" species:7955 "Danio rerio" [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0005575 "cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 ZFIN:ZDB-GENE-030131-5836 GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 HOVERGEN:HBG002295 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 CTD:80336
HSSP:P11940 EMBL:BC044513 IPI:IPI00863260 RefSeq:NP_956133.1
UniGene:Dr.14309 ProteinModelPortal:Q803E7 SMR:Q803E7 PRIDE:Q803E7
GeneID:327625 KEGG:dre:327625 NextBio:20810113 ArrayExpress:Q803E7
Bgee:Q803E7 Uniprot:Q803E7
Length = 620
Score = 274 (101.5 bits), Expect = 5.1e-23, P = 5.1e-23
Identities = 56/78 (71%), Positives = 69/78 (88%)
Query: 84 STLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNA 143
+T AVH++GQEPLT++MLAAA +EQKQ+LGERL+PLIQ ++P LAGKITGMLLEIDN+
Sbjct: 527 NTEPAVHMKGQEPLTASMLAAAPLKEQKQLLGERLYPLIQILHPALAGKITGMLLEIDNS 586
Query: 144 ELLYMLEHNESLKSKVEE 161
ELL+MLE ESL +KVEE
Sbjct: 587 ELLHMLESPESLHAKVEE 604
>UNIPROTKB|Q6GR16 [details] [associations]
symbol:epabp-b "Embryonic polyadenylate-binding protein B"
species:8355 "Xenopus laevis" [GO:0005737 "cytoplasm" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0031370
"eukaryotic initiation factor 4G binding" evidence=ISS] [GO:0043009
"chordate embryonic development" evidence=ISS] [GO:0043621 "protein
self-association" evidence=ISS] [GO:0048255 "mRNA stabilization"
evidence=ISS] [GO:0060212 "negative regulation of
nuclear-transcribed mRNA poly(A) tail shortening" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005737
GO:GO:0000166 GO:GO:0006412 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0043621 GO:GO:0048255 GO:GO:0043009 GO:GO:0060212
GO:GO:0008143 HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 EMBL:BC071118
RefSeq:NP_001085351.1 UniGene:Xl.3974 ProteinModelPortal:Q6GR16
SMR:Q6GR16 PRIDE:Q6GR16 GeneID:443777 KEGG:xla:443777 CTD:443777
Xenbase:XB-GENE-6251876 GO:GO:0031370 Uniprot:Q6GR16
Length = 629
Score = 272 (100.8 bits), Expect = 8.6e-23, P = 8.6e-23
Identities = 57/85 (67%), Positives = 69/85 (81%)
Query: 77 SSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGM 136
SS ++ AV +QGQEPLT+++LAAA QEQKQ+LGER++PLI M+P LAGKITGM
Sbjct: 522 SSAHLQQVLEPAVLMQGQEPLTASLLAAAPLQEQKQILGERIYPLIHEMHPTLAGKITGM 581
Query: 137 LLEIDNAELLYMLEHNESLKSKVEE 161
LLEIDN+ELL+MLE ESL SKVEE
Sbjct: 582 LLEIDNSELLHMLESPESLHSKVEE 606
>UNIPROTKB|Q4VXT4 [details] [associations]
symbol:PABPC1L "HCG2019100, isoform CRA_b" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 SMART:SM00517
EMBL:AL008725 EMBL:CH471077 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797
IPI:IPI00640219 SMR:Q4VXT4 STRING:Q4VXT4 Ensembl:ENST00000372824
UCSC:uc002xmw.2 HOGENOM:HOG000136546 HOVERGEN:HBG093144
Uniprot:Q4VXT4
Length = 168
Score = 262 (97.3 bits), Expect = 1.3e-22, P = 1.3e-22
Identities = 56/91 (61%), Positives = 69/91 (75%)
Query: 71 KCSNPDSSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELA 130
KCS+ S Y AVH+ GQEPLT++MLAAA EQKQM+GERL+PLI ++ +LA
Sbjct: 61 KCSSAAHSTYRVQEP--AVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLA 118
Query: 131 GKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
GKITGMLLEIDN+ELL MLE ESL +K++E
Sbjct: 119 GKITGMLLEIDNSELLLMLESPESLHAKIDE 149
>UNIPROTKB|Q4VXT6 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 EMBL:AL008725
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AL109839
UniGene:Hs.641481 HGNC:HGNC:15797 HOGENOM:HOG000136546
HOVERGEN:HBG093144 IPI:IPI00641237 SMR:Q4VXT6 STRING:Q4VXT6
Ensembl:ENST00000372819 UCSC:uc002xmx.3 Uniprot:Q4VXT6
Length = 149
Score = 255 (94.8 bits), Expect = 7.0e-22, P = 7.0e-22
Identities = 55/89 (61%), Positives = 67/89 (75%)
Query: 71 KCSNPDSSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELA 130
KCS+ S Y AVH+ GQEPLT++MLAAA EQKQM+GERL+PLI ++ +LA
Sbjct: 61 KCSSAAHSTYRVQEP--AVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLA 118
Query: 131 GKITGMLLEIDNAELLYMLEHNESLKSKV 159
GKITGMLLEIDN+ELL MLE ESL +K+
Sbjct: 119 GKITGMLLEIDNSELLLMLESPESLHAKI 147
>UNIPROTKB|E1BNB4 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9913 "Bos
taurus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 EMBL:DAAA02036735
EMBL:DAAA02036734 IPI:IPI00715420 ProteinModelPortal:E1BNB4
Ensembl:ENSBTAT00000022412 OMA:VMTESSH Uniprot:E1BNB4
Length = 618
Score = 263 (97.6 bits), Expect = 7.8e-22, P = 7.8e-22
Identities = 54/74 (72%), Positives = 62/74 (83%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHV GQEPLT++MLAAA EQKQM+GERLFPL+ ++ LAGKITGMLLEIDN+ELL
Sbjct: 525 AVHVPGQEPLTASMLAAAPLHEQKQMIGERLFPLVYNVHAHLAGKITGMLLEIDNSELLL 584
Query: 148 MLEHNESLKSKVEE 161
MLE ESL +KVEE
Sbjct: 585 MLESPESLNAKVEE 598
>UNIPROTKB|H0Y386 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 EMBL:AL008725
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AL109839
HGNC:HGNC:15797 ChiTaRS:PABPC1L ProteinModelPortal:H0Y386
Ensembl:ENST00000372826 Uniprot:H0Y386
Length = 152
Score = 254 (94.5 bits), Expect = 9.0e-22, P = 9.0e-22
Identities = 55/90 (61%), Positives = 67/90 (74%)
Query: 71 KCSNPDSSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELA 130
KCS+ S Y AVH+ GQEPLT++MLAAA EQKQM+GERL+PLI ++ +LA
Sbjct: 43 KCSSAAHSTYRVQEP--AVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLA 100
Query: 131 GKITGMLLEIDNAELLYMLEHNESLKSKVE 160
GKITGMLLEIDN+ELL MLE ESL +K +
Sbjct: 101 GKITGMLLEIDNSELLLMLESPESLHAKAQ 130
>UNIPROTKB|Q4VXU2 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 EMBL:AL008725
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 CTD:80336 HOGENOM:HOG000217922 OrthoDB:EOG4K6G3V
HSSP:P11940 EMBL:AL109839 IPI:IPI00556259 RefSeq:NP_001118228.1
UniGene:Hs.641481 ProteinModelPortal:Q4VXU2 SMR:Q4VXU2
IntAct:Q4VXU2 STRING:Q4VXU2 PhosphoSite:Q4VXU2 DMDM:74754038
PaxDb:Q4VXU2 PRIDE:Q4VXU2 Ensembl:ENST00000217073
Ensembl:ENST00000255136 GeneID:80336 KEGG:hsa:80336 UCSC:uc010ggv.1
GeneCards:GC20P043538 HGNC:HGNC:15797 neXtProt:NX_Q4VXU2
PharmGKB:PA162398552 InParanoid:Q4VXU2 OMA:MNFEMLK ChiTaRS:PABPC1L
GenomeRNAi:80336 NextBio:70904 ArrayExpress:Q4VXU2 Bgee:Q4VXU2
CleanEx:HS_PABPC1L Genevestigator:Q4VXU2 Uniprot:Q4VXU2
Length = 614
Score = 262 (97.3 bits), Expect = 9.8e-22, P = 9.8e-22
Identities = 56/91 (61%), Positives = 69/91 (75%)
Query: 71 KCSNPDSSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELA 130
KCS+ S Y AVH+ GQEPLT++MLAAA EQKQM+GERL+PLI ++ +LA
Sbjct: 507 KCSSAAHSTYRVQEP--AVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLA 564
Query: 131 GKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
GKITGMLLEIDN+ELL MLE ESL +K++E
Sbjct: 565 GKITGMLLEIDNSELLLMLESPESLHAKIDE 595
>UNIPROTKB|Q4VXT5 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 EMBL:AL008725
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AL109839
UniGene:Hs.641481 HGNC:HGNC:15797 HOGENOM:HOG000136546
HOVERGEN:HBG093144 IPI:IPI00643455 SMR:Q4VXT5 STRING:Q4VXT5
Ensembl:ENST00000217075 Uniprot:Q4VXT5
Length = 171
Score = 252 (93.8 bits), Expect = 1.5e-21, P = 1.5e-21
Identities = 55/88 (62%), Positives = 66/88 (75%)
Query: 71 KCSNPDSSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELA 130
KCS+ S Y AVH+ GQEPLT++MLAAA EQKQM+GERL+PLI ++ +LA
Sbjct: 61 KCSSAAHSTYRVQEP--AVHIPGQEPLTASMLAAAPLHEQKQMIGERLYPLIHDVHTQLA 118
Query: 131 GKITGMLLEIDNAELLYMLEHNESLKSK 158
GKITGMLLEIDN+ELL MLE ESL +K
Sbjct: 119 GKITGMLLEIDNSELLLMLESPESLHAK 146
>UNIPROTKB|F1M0P4 [details] [associations]
symbol:F1M0P4 "Uncharacterized protein" species:10116
"Rattus norvegicus" [GO:0000166 "nucleotide binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0071013 GO:GO:0010494
GO:GO:0008143 Gene3D:1.10.1900.10 SUPFAM:SSF63570 GO:GO:2000623
IPI:IPI00778598 ProteinModelPortal:F1M0P4
Ensembl:ENSRNOT00000035783 OMA:KHKFEQM Uniprot:F1M0P4
Length = 338
Score = 243 (90.6 bits), Expect = 1.3e-20, P = 1.3e-20
Identities = 51/69 (73%), Positives = 59/69 (85%)
Query: 93 GQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHN 152
GQE LT++MLA+A PQEQKQMLGE LFPLIQ ++P AGKITGMLLEIDN+ELL+ML
Sbjct: 243 GQEHLTASMLASAPPQEQKQMLGEWLFPLIQVLHPSPAGKITGMLLEIDNSELLHMLASP 302
Query: 153 ESLKSKVEE 161
ESL SKV+E
Sbjct: 303 ESLHSKVDE 311
>UNIPROTKB|E2RND1 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9615
"Canis lupus familiaris" [GO:0003723 "RNA binding" evidence=IEA]
[GO:0000166 "nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:AAEX03013964 Ensembl:ENSCAFT00000015215 Uniprot:E2RND1
Length = 644
Score = 251 (93.4 bits), Expect = 1.7e-20, P = 1.7e-20
Identities = 52/74 (70%), Positives = 61/74 (82%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AV + GQEPLT++MLAAA EQKQM+GERL+PLI + +LAGKITGMLLEIDN+ELL
Sbjct: 561 AVRILGQEPLTASMLAAAPLHEQKQMIGERLYPLIYNTHTQLAGKITGMLLEIDNSELLL 620
Query: 148 MLEHNESLKSKVEE 161
MLE ESL +KVEE
Sbjct: 621 MLESPESLNAKVEE 634
>UNIPROTKB|F1SDR6 [details] [associations]
symbol:PABPC1L "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 GeneTree:ENSGT00640000091232 OMA:MNFEMLK
EMBL:CU633343 Ensembl:ENSSSCT00000008080 Uniprot:F1SDR6
Length = 608
Score = 244 (91.0 bits), Expect = 8.5e-20, P = 8.5e-20
Identities = 54/90 (60%), Positives = 67/90 (74%)
Query: 72 CSNPDSSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAG 131
CS +S + + +R V QEPLT+++LAAA EQKQM+GERL+PLI M+ +LAG
Sbjct: 507 CSATHNSPRVQEPGVR---VPRQEPLTASVLAAAPLHEQKQMIGERLYPLIYNMHTQLAG 563
Query: 132 KITGMLLEIDNAELLYMLEHNESLKSKVEE 161
KITGMLLEIDN+ELL MLE ESL +KVEE
Sbjct: 564 KITGMLLEIDNSELLLMLESPESLSAKVEE 593
>UNIPROTKB|H0YAS7 [details] [associations]
symbol:PABPC1 "Polyadenylate-binding protein 1"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 SMART:SM00517
GO:GO:0003723 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AP001205
HGNC:HGNC:8554 ChiTaRS:PABPC1 Ensembl:ENST00000517990 Bgee:H0YAS7
Uniprot:H0YAS7
Length = 136
Score = 235 (87.8 bits), Expect = 9.2e-20, P = 9.2e-20
Identities = 52/74 (70%), Positives = 60/74 (81%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQML M+P LAGKITGMLLEIDN+ELL+
Sbjct: 45 AVHVQGQEPLTASMLASAPPQEQKQMLA---------MHPTLAGKITGMLLEIDNSELLH 95
Query: 148 MLEHNESLKSKVEE 161
MLE ESL+SKV+E
Sbjct: 96 MLESPESLRSKVDE 109
>RGD|1310759 [details] [associations]
symbol:Pabpc2 "poly(A) binding protein, cytoplasmic 2"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1310759
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:CH473974 GeneTree:ENSGT00640000091232 IPI:IPI00200243
RefSeq:NP_001099621.1 UniGene:Rn.127161 Ensembl:ENSRNOT00000019467
GeneID:291615 KEGG:rno:291615 UCSC:RGD:1310759 CTD:18459
OMA:VSEMNGR OrthoDB:EOG4BK55N NextBio:632859 Uniprot:D4A233
Length = 630
Score = 243 (90.6 bits), Expect = 1.2e-19, P = 1.2e-19
Identities = 51/74 (68%), Positives = 61/74 (82%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
+V +QGQEP T++ L A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+E L+
Sbjct: 531 SVCIQGQEPWTASTLGTA-PQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSEPLH 589
Query: 148 MLEHNESLKSKVEE 161
ML+ ESL S+ +E
Sbjct: 590 MLDSPESLCSRAQE 603
>WB|WBGene00003902 [details] [associations]
symbol:pab-1 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0040010 "positive regulation of growth
rate" evidence=IMP] [GO:0000003 "reproduction" evidence=IMP]
[GO:0009792 "embryo development ending in birth or egg hatching"
evidence=IMP] [GO:0002009 "morphogenesis of an epithelium"
evidence=IMP] [GO:0010171 "body morphogenesis" evidence=IMP]
[GO:0040035 "hermaphrodite genitalia development" evidence=IMP]
[GO:0007276 "gamete generation" evidence=IMP] [GO:0006898
"receptor-mediated endocytosis" evidence=IMP] [GO:0040007 "growth"
evidence=IMP] [GO:0003729 "mRNA binding" evidence=IDA] [GO:0043186
"P granule" evidence=IDA] [GO:0000932 "cytoplasmic mRNA processing
body" evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0009792
GO:GO:0002009 GO:GO:0006898 GO:GO:0040007 GO:GO:0040010
GO:GO:0000166 GO:GO:0003729 Gene3D:3.30.70.330 GO:GO:0010171
GO:GO:0040035 GO:GO:0000932 GO:GO:0007276 GO:GO:0043186 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
EMBL:AL032631 HSSP:P11940 GeneTree:ENSGT00640000091232
GeneID:172920 KEGG:cel:CELE_Y106G6H.2 UCSC:Y106G6H.2b CTD:172920
NextBio:877531 PIR:T26427 RefSeq:NP_001021709.1
ProteinModelPortal:Q9U302 SMR:Q9U302 DIP:DIP-26308N IntAct:Q9U302
MINT:MINT-226577 STRING:Q9U302 PRIDE:Q9U302
EnsemblMetazoa:Y106G6H.2a.1 EnsemblMetazoa:Y106G6H.2a.2
EnsemblMetazoa:Y106G6H.2a.3 EnsemblMetazoa:Y106G6H.2a.4
EnsemblMetazoa:Y106G6H.2a.5 EnsemblMetazoa:Y106G6H.2a.6
WormBase:Y106G6H.2a InParanoid:Q9U302 OMA:CKVAMDE
ArrayExpress:Q9U302 Uniprot:Q9U302
Length = 646
Score = 239 (89.2 bits), Expect = 3.4e-19, P = 3.4e-19
Identities = 47/77 (61%), Positives = 64/77 (83%)
Query: 87 RAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYP--ELAGKITGMLLEIDNAE 144
+ + + GQEPLTS MLAAA PQEQKQ+LGER++ LI+++YP + AGKITGM+LEIDN+E
Sbjct: 559 QGIVIGGQEPLTSAMLAAAAPQEQKQLLGERIYALIEKLYPGHKDAGKITGMMLEIDNSE 618
Query: 145 LLYMLEHNESLKSKVEE 161
L+ ML+ +E +SKV+E
Sbjct: 619 LIMMLQDSELFRSKVDE 635
>UNIPROTKB|F1RKX5 [details] [associations]
symbol:F1RKX5 "Uncharacterized protein" species:9823 "Sus
scrofa" [GO:0003723 "RNA binding" evidence=IEA] InterPro:IPR002004
Pfam:PF00658 PROSITE:PS51309 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 GeneTree:ENSGT00640000091232 EMBL:CU915426
Ensembl:ENSSSCT00000008676 Uniprot:F1RKX5
Length = 157
Score = 227 (85.0 bits), Expect = 6.5e-19, P = 6.5e-19
Identities = 51/95 (53%), Positives = 68/95 (71%)
Query: 65 PQTLSDKCSNPDSSGYIDDSTLRAVHVQGQEPLTSTMLA-AAQPQEQKQMLGERLFPLIQ 123
P + + +P S+ + ++ AVHVQGQEP+T++MLA A++ QEQKQMLG+ LF IQ
Sbjct: 40 PYKYTSRVHSPHSAIQLLQASQPAVHVQGQEPVTASMLAIASRHQEQKQMLGKHLFLFIQ 99
Query: 124 RMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 158
M+ LAGKITGMLLEIDN+ELL+ E E+L K
Sbjct: 100 TMHANLAGKITGMLLEIDNSELLHTPEPPETLLPK 134
>RGD|1311201 [details] [associations]
symbol:Pabpc6 "poly(A) binding protein, cytoplasmic 6"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1311201
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 eggNOG:COG0724
HOVERGEN:HBG002295 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922
GeneTree:ENSGT00640000091232 EMBL:CH474059 EMBL:BC168959
IPI:IPI00214614 RefSeq:NP_001099678.1 UniGene:Rn.108830
MINT:MINT-7138834 Ensembl:ENSRNOT00000023319 GeneID:292295
KEGG:rno:292295 CTD:67543 OMA:HEDARKA OrthoDB:EOG41G360
NextBio:633994 Genevestigator:B5DF80 Uniprot:B5DF80
Length = 643
Score = 236 (88.1 bits), Expect = 7.0e-19, P = 7.0e-19
Identities = 51/74 (68%), Positives = 58/74 (78%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AV QG+E LT +MLA+A PQ QKQMLGE LF LIQ M+P LAGKITGMLLEIDN EL +
Sbjct: 543 AVSAQGKESLTVSMLASAPPQAQKQMLGEWLFSLIQAMHPALAGKITGMLLEIDNLELRH 602
Query: 148 MLEHNESLKSKVEE 161
MLE E L +KV+E
Sbjct: 603 MLESPECLHTKVDE 616
>WB|WBGene00003903 [details] [associations]
symbol:pab-2 species:6239 "Caenorhabditis elegans"
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] [GO:0009792 "embryo development ending in
birth or egg hatching" evidence=IMP] [GO:0000003 "reproduction"
evidence=IMP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0009792 GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0000003
GO:GO:0003723 eggNOG:COG0724 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
GeneTree:ENSGT00640000091232 EMBL:Z50110 PIR:T21095
RefSeq:NP_510260.1 ProteinModelPortal:Q19579 SMR:Q19579
STRING:Q19579 PaxDb:Q19579 PRIDE:Q19579 EnsemblMetazoa:F18H3.3a.1
EnsemblMetazoa:F18H3.3a.2 EnsemblMetazoa:F18H3.3a.3
EnsemblMetazoa:F18H3.3a.4 GeneID:181473 KEGG:cel:CELE_F18H3.3
UCSC:F18H3.3a.3 CTD:181473 WormBase:F18H3.3a InParanoid:Q19579
OMA:YEESNIG NextBio:914090 ArrayExpress:Q19579 Uniprot:Q19579
Length = 692
Score = 229 (85.7 bits), Expect = 4.6e-18, P = 4.6e-18
Identities = 54/104 (51%), Positives = 69/104 (66%)
Query: 61 RWNKPQTLSDK-CSNPDSSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLF 119
R +PQ S + P G + +H GQE LTS MLA A PQEQKQ+LGER++
Sbjct: 571 RQQQPQQHSQQPAQQPGQQGQGQSGIV--IH--GQETLTSHMLAQAAPQEQKQLLGERIY 626
Query: 120 PLIQRMYP--ELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
LI++M+P + AGKITGM+LEIDNAEL+ ML+ E +SKVEE
Sbjct: 627 ALIEKMFPNHKEAGKITGMMLEIDNAELIMMLQDAELFRSKVEE 670
>ASPGD|ASPL0000010999 [details] [associations]
symbol:fabM species:162425 "Emericella nidulans"
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0008150
"biological_process" evidence=ND] [GO:0005575 "cellular_component"
evidence=ND] [GO:0000166 "nucleotide binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
GO:GO:0005737 GO:GO:0006417 GO:GO:0000166 GO:GO:0006397
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:BN001302 EMBL:AACD01000065
GO:GO:0051028 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 HSSP:P11940
EMBL:U70731 RefSeq:XP_661604.1 ProteinModelPortal:Q5B630 SMR:Q5B630
STRING:Q5B630 PRIDE:Q5B630 EnsemblFungi:CADANIAT00004687
GeneID:2873424 KEGG:ani:AN4000.2 OMA:MIRITYS OrthoDB:EOG4QJVWJ
Uniprot:Q5B630
Length = 732
Score = 213 (80.0 bits), Expect = 2.6e-16, P = 2.6e-16
Identities = 43/65 (66%), Positives = 54/65 (83%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
LT+ L+AA PQ+QKQMLGE L+P IQ PELAGKITGMLLE+DN ELL +LE +E+L+
Sbjct: 633 LTAQALSAAPPQQQKQMLGEALYPKIQATQPELAGKITGMLLEMDNTELLGLLEDDEALR 692
Query: 157 SKVEE 161
+KV+E
Sbjct: 693 AKVDE 697
>GENEDB_PFALCIPARUM|PFL1170w [details] [associations]
symbol:PFL1170w "polyadenylate-binding protein,
putative" species:5833 "Plasmodium falciparum" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0006396 "RNA processing" evidence=ISS]
[GO:0008143 "poly(A) RNA binding" evidence=ISS] [GO:0005575
"cellular_component" evidence=ND] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 207 (77.9 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 40/73 (54%), Positives = 53/73 (72%)
Query: 89 VHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYM 148
V+ LT+ LA+A P QKQ+LGE LFPL+ +P LAGKITGM+LE+DN+ELL +
Sbjct: 794 VNFNNNSTLTAAALASAPPSMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLIL 853
Query: 149 LEHNESLKSKVEE 161
LE+ E LK K++E
Sbjct: 854 LENEEQLKKKIDE 866
>UNIPROTKB|Q8I5H4 [details] [associations]
symbol:PFL1170w "Polyadenylate-binding protein, putative"
species:36329 "Plasmodium falciparum 3D7" [GO:0003729 "mRNA
binding" evidence=ISS] [GO:0005575 "cellular_component"
evidence=ND] [GO:0006396 "RNA processing" evidence=ISS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006396 EMBL:AE014188 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 RefSeq:XP_001350640.1
ProteinModelPortal:Q8I5H4 SMR:Q8I5H4 IntAct:Q8I5H4
MINT:MINT-1695921 EnsemblProtists:PFL1170w:mRNA GeneID:811286
KEGG:pfa:PFL1170w EuPathDB:PlasmoDB:PF3D7_1224300 OMA:YEDEESA
ProtClustDB:CLSZ2500971 Uniprot:Q8I5H4
Length = 875
Score = 207 (77.9 bits), Expect = 1.5e-15, P = 1.5e-15
Identities = 40/73 (54%), Positives = 53/73 (72%)
Query: 89 VHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYM 148
V+ LT+ LA+A P QKQ+LGE LFPL+ +P LAGKITGM+LE+DN+ELL +
Sbjct: 794 VNFNNNSTLTAAALASAPPSMQKQVLGENLFPLVANYHPTLAGKITGMMLEMDNSELLIL 853
Query: 149 LEHNESLKSKVEE 161
LE+ E LK K++E
Sbjct: 854 LENEEQLKKKIDE 866
>RGD|1563142 [details] [associations]
symbol:Pabpc1l "poly(A) binding protein, cytoplasmic 1-like"
species:10116 "Rattus norvegicus" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 RGD:1563142
GO:GO:0000166 Gene3D:3.30.70.330 GO:GO:0003723 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 OrthoDB:EOG4K6G3V
GeneTree:ENSGT00640000091232 IPI:IPI00778604
ProteinModelPortal:D3ZAS7 Ensembl:ENSRNOT00000055172
UCSC:RGD:1563142 Uniprot:D3ZAS7
Length = 607
Score = 202 (76.2 bits), Expect = 2.9e-15, P = 2.9e-15
Identities = 46/81 (56%), Positives = 56/81 (69%)
Query: 81 IDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEI 140
+ +ST V+V G +PLT +ML AA EQKQM+GERL+ LI L GKITGMLLE+
Sbjct: 513 VQEST---VYVPGHQPLTVSMLDAAPLHEQKQMIGERLYSLIHDACAPLTGKITGMLLEM 569
Query: 141 DNAELLYMLEHNESLKSKVEE 161
DN ELL +LE ESL +K EE
Sbjct: 570 DNLELLLLLESPESLHAKAEE 590
>UNIPROTKB|A4QUF0 [details] [associations]
symbol:PAB1 "Polyadenylate-binding protein, cytoplasmic and
nuclear" species:242507 "Magnaporthe oryzae 70-15" [GO:0005575
"cellular_component" evidence=ND] [GO:0043581 "mycelium
development" evidence=IEP] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005634 GO:GO:0005737 GO:GO:0006417 GO:GO:0000166
EMBL:CM001233 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
GO:GO:0043581 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
OrthoDB:EOG4QJVWJ RefSeq:XP_003712237.1 ProteinModelPortal:A4QUF0
SMR:A4QUF0 STRING:A4QUF0 EnsemblFungi:MGG_09505T0 GeneID:2680542
KEGG:mgr:MGG_09505 Uniprot:A4QUF0
Length = 762
Score = 186 (70.5 bits), Expect = 2.2e-13, P = 2.2e-13
Identities = 38/68 (55%), Positives = 53/68 (77%)
Query: 95 EPLTSTMLAAAQ-PQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNE 153
E L + A A P +QKQ+LGE +FP IQ ++PELAGKITGMLLE+DN EL+ ++E++
Sbjct: 664 EGLQGQLAAVADNPGQQKQILGEAIFPKIQAIHPELAGKITGMLLEMDNTELVALVENDG 723
Query: 154 SLKSKVEE 161
+L+SKV+E
Sbjct: 724 ALRSKVDE 731
>TAIR|locus:2012161 [details] [associations]
symbol:PAB8 "AT1G49760" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0005737
"cytoplasm" evidence=ISM] [GO:0046686 "response to cadmium ion"
evidence=IEP] [GO:0005829 "cytosol" evidence=IDA] [GO:0005515
"protein binding" evidence=IPI] [GO:0006164 "purine nucleotide
biosynthetic process" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0005829 GO:GO:0046686 GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0003723 EMBL:AC011807 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 ProtClustDB:CLSN2714507
EMBL:AF370517 EMBL:AY064622 IPI:IPI00535850 PIR:C96534
RefSeq:NP_001185184.1 RefSeq:NP_564554.1 UniGene:At.21584
UniGene:At.67107 UniGene:At.67318 ProteinModelPortal:Q9FXA2
SMR:Q9FXA2 IntAct:Q9FXA2 STRING:Q9FXA2 PaxDb:Q9FXA2 PRIDE:Q9FXA2
ProMEX:Q9FXA2 EnsemblPlants:AT1G49760.1 EnsemblPlants:AT1G49760.2
GeneID:841399 KEGG:ath:AT1G49760 TAIR:At1g49760 InParanoid:Q9FXA2
OMA:RPPYYAP PhylomeDB:Q9FXA2 Genevestigator:Q9FXA2 Uniprot:Q9FXA2
Length = 671
Score = 183 (69.5 bits), Expect = 3.8e-13, P = 3.8e-13
Identities = 47/113 (41%), Positives = 68/113 (60%)
Query: 56 MYRRYRWNKPQTLSDKCSNPDSSGYIDDSTLRAVHVQGQ---EPLT----STMLAAAQPQ 108
MYR Y T+ N S Y D S+ VH + +P+ +T LA A P+
Sbjct: 530 MYR-YPQRDVNTMPGPTQNMLSVPY-DVSSGGGVHHRDSPTSQPVPIVALATRLANAAPE 587
Query: 109 EQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q+ MLGE L+PL++++ PE A K+TGMLLE+D E+L++LE E+LK+KV E
Sbjct: 588 QQRTMLGENLYPLVEQLEPESAAKVTGMLLEMDQTEVLHLLESPEALKAKVTE 640
>TAIR|locus:2199700 [details] [associations]
symbol:PAB3 "poly(A) binding protein 3" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0006397
"mRNA processing" evidence=IGI] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 SMART:SM00517 EMBL:CP002684 GenomeReviews:CT485782_GR
GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330 GO:GO:0003723
eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570
TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:AC003979 EMBL:Y12227
EMBL:AF293840 EMBL:AY054490 IPI:IPI00543342 PIR:T00768
RefSeq:NP_173690.1 UniGene:At.208 ProteinModelPortal:O64380
SMR:O64380 PaxDb:O64380 PRIDE:O64380 EnsemblPlants:AT1G22760.1
GeneID:838882 KEGG:ath:AT1G22760 TAIR:At1g22760 InParanoid:O64380
OMA:SSISHQK PhylomeDB:O64380 ProtClustDB:CLSN2679283
Genevestigator:O64380 GermOnline:AT1G22760 Uniprot:O64380
Length = 660
Score = 173 (66.0 bits), Expect = 4.4e-12, P = 4.4e-12
Identities = 35/65 (53%), Positives = 51/65 (78%)
Query: 97 LTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
LTS+ LA+A P ++ +MLGE+L+PL++R P K+TGMLLE+D AE+L+++E E+LK
Sbjct: 575 LTSS-LASASPADRTRMLGEQLYPLVERHEPLHVAKVTGMLLEMDQAEILHLMESPEALK 633
Query: 157 SKVEE 161
SKV E
Sbjct: 634 SKVSE 638
>TAIR|locus:2124261 [details] [associations]
symbol:PAB2 "AT4G34110" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0009651
"response to salt stress" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
[GO:0006486 "protein glycosylation" evidence=RCA] [GO:0006413
"translational initiation" evidence=ISS] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR002343 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PRINTS:PR00961
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 SMART:SM00517
GO:GO:0005829 EMBL:CP002687 GenomeReviews:CT486007_GR GO:GO:0000166
GO:GO:0009651 Gene3D:3.30.70.330 GO:GO:0003743 EMBL:AL021961
EMBL:AL161584 eggNOG:COG0724 KO:K13126 Gene3D:1.10.1900.10
SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HOGENOM:HOG000217922 EMBL:L19418
EMBL:BT002354 IPI:IPI00532109 PIR:T05425 RefSeq:NP_195137.5
UniGene:At.25252 ProteinModelPortal:P42731 SMR:P42731 IntAct:P42731
STRING:P42731 PaxDb:P42731 PRIDE:P42731 ProMEX:P42731
EnsemblPlants:AT4G34110.1 GeneID:829557 KEGG:ath:AT4G34110
TAIR:At4g34110 InParanoid:P42731 OMA:FDPIKGR PhylomeDB:P42731
ProtClustDB:CLSN2714507 Genevestigator:P42731 GermOnline:AT4G34110
Uniprot:P42731
Length = 629
Score = 164 (62.8 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 35/70 (50%), Positives = 51/70 (72%)
Query: 96 PLTSTMLAA----AQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEH 151
PLT LA+ A P++Q+ MLGE L+PL++++ E A K+TGMLLE+D E+L++LE
Sbjct: 537 PLTIGALASNLSNATPEQQRTMLGEVLYPLVEQVEAESAAKVTGMLLEMDQTEVLHLLES 596
Query: 152 NESLKSKVEE 161
E+LK+KV E
Sbjct: 597 PEALKAKVAE 606
>TAIR|locus:2058573 [details] [associations]
symbol:PAB4 "AT2G23350" species:3702 "Arabidopsis
thaliana" [GO:0003723 "RNA binding" evidence=ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS] [GO:0046686
"response to cadmium ion" evidence=IEP] [GO:0005829 "cytosol"
evidence=IDA] [GO:0005515 "protein binding" evidence=IPI]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005829
GO:GO:0046686 EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC002391 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 HSSP:P11940 OMA:MIRITYS EMBL:AY050859
EMBL:AY079389 IPI:IPI00530940 PIR:T00497 RefSeq:NP_179916.1
UniGene:At.25439 ProteinModelPortal:O22173 SMR:O22173 IntAct:O22173
STRING:O22173 PaxDb:O22173 PRIDE:O22173 ProMEX:O22173
EnsemblPlants:AT2G23350.1 GeneID:816867 KEGG:ath:AT2G23350
TAIR:At2g23350 InParanoid:O22173 PhylomeDB:O22173
ProtClustDB:CLSN2913301 Genevestigator:O22173 Uniprot:O22173
Length = 662
Score = 159 (61.0 bits), Expect = 1.4e-10, P = 1.4e-10
Identities = 31/63 (49%), Positives = 46/63 (73%)
Query: 99 STMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSK 158
+T LA A P +Q+ +LGE L+PL+ ++ E A K+TGMLLE+D E+L++LE E+L +K
Sbjct: 563 ATSLANATPAQQRTLLGESLYPLVDQIESEHAAKVTGMLLEMDQTEVLHLLESPEALNAK 622
Query: 159 VEE 161
V E
Sbjct: 623 VSE 625
>UNIPROTKB|H0YER0 [details] [associations]
symbol:PABPC4 "Polyadenylate-binding protein 4"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS51309 GO:GO:0003723
EMBL:AL365277 Gene3D:1.10.1900.10 SUPFAM:SSF63570 EMBL:AL845289
HGNC:HGNC:8557 ChiTaRS:PABPC4 Ensembl:ENST00000530186
Uniprot:H0YER0
Length = 68
Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
Identities = 31/41 (75%), Positives = 36/41 (87%)
Query: 121 LIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
LIQ M+ LAGKITGMLLEIDN+ELL+MLE ESL+SKV+E
Sbjct: 2 LIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDE 42
>UNIPROTKB|K7GPI8 [details] [associations]
symbol:LOC100738301 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS50237 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 GeneTree:ENSGT00640000091448 EMBL:CU207279
Ensembl:ENSSSCT00000035758 Uniprot:K7GPI8
Length = 1585
Score = 140 (54.3 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 1181 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 1231
Score = 35 (17.4 bits), Expect = 6.6e-09, Sum P(2) = 6.6e-09
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 51 AVSFIMYRRYRWNKPQTLSDKCSNPDSSGYIDDSTLR 87
AV ++R P + S ++ YID S LR
Sbjct: 504 AVRNTQHQRAASTAPSSTSTPAASSAGLIYIDPSNLR 540
>POMBASE|SPAC57A7.04c [details] [associations]
symbol:pabp "mRNA export shuttling protein"
species:4896 "Schizosaccharomyces pombe" [GO:0002183 "cytoplasmic
translational initiation" evidence=NAS] [GO:0005634 "nucleus"
evidence=IDA] [GO:0005737 "cytoplasm" evidence=IDA] [GO:0005829
"cytosol" evidence=IDA] [GO:0006406 "mRNA export from nucleus"
evidence=IMP] [GO:0006446 "regulation of translational initiation"
evidence=ISO] [GO:0008143 "poly(A) RNA binding" evidence=TAS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 PomBase:SPAC57A7.04c
GO:GO:0005829 GO:GO:0005634 EMBL:CU329670 GenomeReviews:CU329670_GR
GO:GO:0000166 GO:GO:0006446 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0006406 eggNOG:COG0724 GO:GO:0002183 GO:GO:0008143 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 OrthoDB:EOG4QJVWJ EMBL:M64603 PIR:T38950
RefSeq:NP_593377.1 ProteinModelPortal:P31209 SMR:P31209
IntAct:P31209 STRING:P31209 PRIDE:P31209
EnsemblFungi:SPAC57A7.04c.1 GeneID:2541505 KEGG:spo:SPAC57A7.04c
OMA:ANHECAQ NextBio:20802604 Uniprot:P31209
Length = 653
Score = 143 (55.4 bits), Expect = 7.1e-09, P = 7.1e-09
Identities = 31/67 (46%), Positives = 45/67 (67%)
Query: 95 EPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNES 154
E T+ LAA + +KQ+LGE L+P + +L+GKITGMLLE+ N+ELL +LE + +
Sbjct: 570 ERFTAADLAAVPEESRKQVLGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSA 629
Query: 155 LKSKVEE 161
L +V E
Sbjct: 630 LNERVNE 636
>TAIR|locus:2090654 [details] [associations]
symbol:MPC "maternally expressed pab C-terminal"
species:3702 "Arabidopsis thaliana" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0005575 "cellular_component" evidence=ND]
[GO:0006417 "regulation of translation" evidence=TAS] [GO:0008143
"poly(A) RNA binding" evidence=ISS] InterPro:IPR002004 Pfam:PF00658
PROSITE:PS51309 EMBL:CP002686 GenomeReviews:BA000014_GR
GO:GO:0006417 GO:GO:0003723 EMBL:AB025624 Gene3D:1.10.1900.10
SUPFAM:SSF63570 HSSP:P11940 EMBL:BT024667 IPI:IPI00529629
RefSeq:NP_188566.1 UniGene:At.50202 ProteinModelPortal:Q9LT82
SMR:Q9LT82 STRING:Q9LT82 EnsemblPlants:AT3G19350.1 GeneID:821469
KEGG:ath:AT3G19350 TAIR:At3g19350 eggNOG:NOG272598
HOGENOM:HOG000153094 InParanoid:Q9LT82 OMA:VEELEPQ PhylomeDB:Q9LT82
ProtClustDB:CLSN2915372 Genevestigator:Q9LT82 Uniprot:Q9LT82
Length = 103
Score = 131 (51.2 bits), Expect = 9.7e-09, P = 9.7e-09
Identities = 24/60 (40%), Positives = 43/60 (71%)
Query: 102 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
LA+ P+EQ+ ++GE LF +++ + P+ A KITGM+LE+D ++L++L ++ K V+E
Sbjct: 23 LASLPPKEQRDLIGETLFFMVEELEPQFAPKITGMILELDQDKVLHLLVTPKAFKEMVKE 82
>RGD|621236 [details] [associations]
symbol:Ubr5 "ubiquitin protein ligase E3 component n-recognin 5"
species:10116 "Rattus norvegicus" [GO:0000209 "protein
polyubiquitination" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IEA;IBA;TAS] [GO:0005622 "intracellular" evidence=IEA]
[GO:0005634 "nucleus" evidence=ISO;IBA] [GO:0005737 "cytoplasm"
evidence=IBA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=ISO;ISS] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0016567 "protein
ubiquitination" evidence=TAS] [GO:0033160 "positive regulation of
protein import into nucleus, translocation" evidence=ISO]
[GO:0034450 "ubiquitin-ubiquitin ligase activity" evidence=ISO]
[GO:0035413 "positive regulation of catenin import into nucleus"
evidence=ISO] [GO:0042787 "protein ubiquitination involved in
ubiquitin-dependent protein catabolic process" evidence=IBA]
[GO:0043130 "ubiquitin binding" evidence=IEA] [GO:0050847
"progesterone receptor signaling pathway" evidence=ISO;IBA]
[GO:0090263 "positive regulation of canonical Wnt receptor
signaling pathway" evidence=ISO] [GO:1901315 "negative regulation
of histone H2A K63-linked ubiquitination" evidence=ISO;ISS]
[GO:2000780 "negative regulation of double-strand break repair"
evidence=ISO;ISS] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 InterPro:IPR003126 InterPro:IPR024725
Pfam:PF00658 Pfam:PF02207 Pfam:PF11547 PROSITE:PS50237
PROSITE:PS51157 PROSITE:PS51309 SMART:SM00119 SMART:SM00517
UniPathway:UPA00143 RGD:621236 GO:GO:0005634 GO:GO:0005737
GO:GO:0046872 GO:GO:0008270 GO:GO:0006281 GO:GO:0006974
GO:GO:0003723 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
GO:GO:0004842 GO:GO:0090263 GO:GO:0000209 GO:GO:0042787
GO:GO:0035413 GO:GO:0034450 GO:GO:0033160 Gene3D:1.10.1900.10
SUPFAM:SSF63570 SUPFAM:SSF56204 eggNOG:COG5021 InterPro:IPR013993
SMART:SM00396 GO:GO:0050847 GO:GO:2000780 GO:GO:1901315 PDB:3NTW
PDBsum:3NTW HOGENOM:HOG000046848 OrthoDB:EOG4QVCB2 EMBL:X64411
IPI:IPI00768617 PIR:S22659 UniGene:Rn.54812 STRING:Q62671
PhosphoSite:Q62671 PRIDE:Q62671 UCSC:RGD:621236 InParanoid:Q62671
ArrayExpress:Q62671 Genevestigator:Q62671
GermOnline:ENSRNOG00000006816 Uniprot:Q62671
Length = 2788
Score = 143 (55.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++VEE
Sbjct: 2384 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEE 2434
Score = 35 (17.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 51 AVSFIMYRRYRWNKPQTLSDKCSNPDSSGYIDDSTLR 87
AV ++R P + S ++ YID S LR
Sbjct: 1706 AVRNTQHQRAASTAPSSTSTPAASSAGLIYIDPSNLR 1742
>UNIPROTKB|Q62671 [details] [associations]
symbol:Ubr5 "E3 ubiquitin-protein ligase UBR5"
species:10116 "Rattus norvegicus" [GO:0003723 "RNA binding"
evidence=IEA] [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0043130 "ubiquitin binding" evidence=IEA] Pfam:PF00632
InterPro:IPR000569 InterPro:IPR002004 InterPro:IPR003126
InterPro:IPR024725 Pfam:PF00658 Pfam:PF02207 Pfam:PF11547
PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309 SMART:SM00119
SMART:SM00517 UniPathway:UPA00143 RGD:621236 GO:GO:0005634
GO:GO:0005737 GO:GO:0046872 GO:GO:0008270 GO:GO:0006281
GO:GO:0006974 GO:GO:0003723 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 GO:GO:0090263 GO:GO:0000209
GO:GO:0042787 GO:GO:0035413 GO:GO:0034450 GO:GO:0033160
Gene3D:1.10.1900.10 SUPFAM:SSF63570 SUPFAM:SSF56204 eggNOG:COG5021
InterPro:IPR013993 SMART:SM00396 GO:GO:0050847 GO:GO:2000780
GO:GO:1901315 PDB:3NTW PDBsum:3NTW HOGENOM:HOG000046848
OrthoDB:EOG4QVCB2 EMBL:X64411 IPI:IPI00768617 PIR:S22659
UniGene:Rn.54812 STRING:Q62671 PhosphoSite:Q62671 PRIDE:Q62671
UCSC:RGD:621236 InParanoid:Q62671 ArrayExpress:Q62671
Genevestigator:Q62671 GermOnline:ENSRNOG00000006816 Uniprot:Q62671
Length = 2788
Score = 143 (55.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 28/51 (54%), Positives = 38/51 (74%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++VEE
Sbjct: 2384 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEE 2434
Score = 35 (17.4 bits), Expect = 1.1e-08, Sum P(2) = 1.1e-08
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 51 AVSFIMYRRYRWNKPQTLSDKCSNPDSSGYIDDSTLR 87
AV ++R P + S ++ YID S LR
Sbjct: 1706 AVRNTQHQRAASTAPSSTSTPAASSAGLIYIDPSNLR 1742
>UNIPROTKB|E7ET84 [details] [associations]
symbol:UBR5 "E3 ubiquitin-protein ligase UBR5" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS50237 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 GO:GO:0016567 GO:GO:0003723
GO:GO:0005622 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 ChiTaRS:UBR5 EMBL:AP002907 HGNC:HGNC:16806
EMBL:AP002981 IPI:IPI00977666 ProteinModelPortal:E7ET84 SMR:E7ET84
Ensembl:ENST00000518205 ArrayExpress:E7ET84 Bgee:E7ET84
Uniprot:E7ET84
Length = 527
Score = 140 (54.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 123 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 173
>TAIR|locus:2040625 [details] [associations]
symbol:PAB7 "poly(A) binding protein 7" species:3702
"Arabidopsis thaliana" [GO:0000166 "nucleotide binding"
evidence=IEA] [GO:0003676 "nucleic acid binding" evidence=IEA]
[GO:0003723 "RNA binding" evidence=IEA;ISS] [GO:0003743
"translation initiation factor activity" evidence=ISS]
InterPro:IPR000504 InterPro:IPR002004 InterPro:IPR006515
InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102
PROSITE:PS51309 SMART:SM00360 SMART:SM00517 GO:GO:0005634
EMBL:CP002685 GenomeReviews:CT485783_GR GO:GO:0000166
Gene3D:3.30.70.330 GO:GO:0003723 EMBL:AC006282 eggNOG:COG0724
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HOGENOM:HOG000217922 IPI:IPI00535861 PIR:B84783 RefSeq:NP_181204.1
UniGene:At.37531 UniGene:At.50119 ProteinModelPortal:Q9ZQA8
SMR:Q9ZQA8 PaxDb:Q9ZQA8 PRIDE:Q9ZQA8 EnsemblPlants:AT2G36660.1
GeneID:818238 KEGG:ath:AT2G36660 TAIR:At2g36660 InParanoid:Q9ZQA8
OMA:RSLCYGY PhylomeDB:Q9ZQA8 ProtClustDB:CLSN2913328
Genevestigator:Q9ZQA8 GermOnline:AT2G36660 Uniprot:Q9ZQA8
Length = 609
Score = 140 (54.3 bits), Expect = 1.4e-08, P = 1.4e-08
Identities = 27/52 (51%), Positives = 40/52 (76%)
Query: 110 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+ Q+LGE L PL++++ P+LA KITGMLLE+D +ELL +L+ E L +V+E
Sbjct: 525 EMQLLGELLHPLVEKLEPQLANKITGMLLEMDKSELLLLLKSPEDLAVRVDE 576
>ZFIN|ZDB-GENE-030131-6559 [details] [associations]
symbol:ubr5 "ubiquitin protein ligase E3 component
n-recognin 5" species:7955 "Danio rerio" [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA;IBA] [GO:0006464
"cellular protein modification process" evidence=IEA] [GO:0043130
"ubiquitin binding" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0050847 "progesterone receptor
signaling pathway" evidence=IBA] [GO:0005634 "nucleus"
evidence=IBA] [GO:0005737 "cytoplasm" evidence=IBA] [GO:0042787
"protein ubiquitination involved in ubiquitin-dependent protein
catabolic process" evidence=IBA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 InterPro:IPR003126 InterPro:IPR024725
Pfam:PF00658 Pfam:PF02207 Pfam:PF11547 PROSITE:PS50237
PROSITE:PS51157 PROSITE:PS51309 SMART:SM00119 SMART:SM00517
ZFIN:ZDB-GENE-030131-6559 GO:GO:0005634 GO:GO:0005737 GO:GO:0008270
GO:GO:0003723 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
GO:GO:0004842 GO:GO:0042787 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 GeneTree:ENSGT00640000091448 InterPro:IPR013993
SMART:SM00396 GO:GO:0050847 EMBL:CR293507 IPI:IPI00618527
Ensembl:ENSDART00000134444 ArrayExpress:F1QT71 Bgee:F1QT71
Uniprot:F1QT71
Length = 2822
Score = 138 (53.6 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 27/51 (52%), Positives = 37/51 (72%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P + M P A KITGMLLE+ A+LL +L +SL+++VEE
Sbjct: 2417 RQALGERLYPRVHAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVEE 2467
Score = 39 (18.8 bits), Expect = 1.4e-08, Sum P(2) = 1.4e-08
Identities = 10/38 (26%), Positives = 20/38 (52%)
Query: 38 ISFGALALVTLFGAVSFIMYRRYRWNKPQTLSDKCSNP 75
+S GAL + + +Y+ ++WN+P+ + NP
Sbjct: 400 VSIGALYSELVAVSTKGELYQ-WKWNEPEPYRN-AQNP 435
>UNIPROTKB|J9P5M9 [details] [associations]
symbol:UBR5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0008270 "zinc ion binding" evidence=IEA]
[GO:0005622 "intracellular" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 InterPro:IPR003126 Pfam:PF00658 Pfam:PF02207
PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309 SMART:SM00119
SMART:SM00517 GO:GO:0008270 GO:GO:0016567 GO:GO:0003723
GO:GO:0005622 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 GeneTree:ENSGT00640000091448 InterPro:IPR013993
SMART:SM00396 EMBL:AAEX03008693 EMBL:AAEX03008694
Ensembl:ENSCAFT00000047363 Uniprot:J9P5M9
Length = 2307
Score = 140 (54.3 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 1903 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 1953
Score = 35 (17.4 bits), Expect = 1.5e-08, Sum P(2) = 1.5e-08
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 51 AVSFIMYRRYRWNKPQTLSDKCSNPDSSGYIDDSTLR 87
AV ++R P + S ++ YID S LR
Sbjct: 1225 AVRNTQHQRATSTAPSSTSTPAASSAGLIYIDPSNLR 1261
>UNIPROTKB|E7EMW7 [details] [associations]
symbol:UBR5 "E3 ubiquitin-protein ligase UBR5" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR002004
InterPro:IPR003126 InterPro:IPR024725 Pfam:PF00658 Pfam:PF02207
Pfam:PF11547 PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 GO:GO:0008270 GO:GO:0016567
GO:GO:0003723 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 ChiTaRS:UBR5 InterPro:IPR013993 SMART:SM00396
EMBL:AP002907 HGNC:HGNC:16806 EMBL:AP002981 IPI:IPI00983716
ProteinModelPortal:E7EMW7 SMR:E7EMW7 Ensembl:ENST00000521922
ArrayExpress:E7EMW7 Bgee:E7EMW7 Uniprot:E7EMW7
Length = 2792
Score = 140 (54.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2388 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2438
Score = 35 (17.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 51 AVSFIMYRRYRWNKPQTLSDKCSNPDSSGYIDDSTLR 87
AV ++R P + S ++ YID S LR
Sbjct: 1711 AVRNTQHQRAASTAPSSTSTPAASSAGLIYIDPSNLR 1747
>UNIPROTKB|F1N0L2 [details] [associations]
symbol:UBR5 "Uncharacterized protein" species:9913 "Bos
taurus" [GO:2000780 "negative regulation of double-strand break
repair" evidence=IEA] [GO:1901315 "negative regulation of histone
H2A K63-linked ubiquitination" evidence=IEA] [GO:0090263 "positive
regulation of canonical Wnt receptor signaling pathway"
evidence=IEA] [GO:0050847 "progesterone receptor signaling pathway"
evidence=IEA] [GO:0035413 "positive regulation of catenin import
into nucleus" evidence=IEA] [GO:0034450 "ubiquitin-ubiquitin ligase
activity" evidence=IEA] [GO:0033160 "positive regulation of protein
import into nucleus, translocation" evidence=IEA] [GO:0006974
"response to DNA damage stimulus" evidence=IEA] [GO:0005634
"nucleus" evidence=IEA] [GO:0000209 "protein polyubiquitination"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 InterPro:IPR003126 InterPro:IPR024725
Pfam:PF00658 Pfam:PF02207 Pfam:PF11547 PROSITE:PS50237
PROSITE:PS51157 PROSITE:PS51309 SMART:SM00119 SMART:SM00517
GO:GO:0005634 GO:GO:0008270 GO:GO:0006974 GO:GO:0003723
Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0090263
GO:GO:0000209 GO:GO:0035413 GO:GO:0034450 GO:GO:0033160
Gene3D:1.10.1900.10 SUPFAM:SSF63570 SUPFAM:SSF56204
GeneTree:ENSGT00640000091448 KO:K10593 OMA:ERCDGNR
InterPro:IPR013993 SMART:SM00396 GO:GO:0050847 CTD:51366
EMBL:DAAA02039335 IPI:IPI00711165 RefSeq:NP_001179346.1
UniGene:Bt.30209 PRIDE:F1N0L2 Ensembl:ENSBTAT00000028262
GeneID:515582 KEGG:bta:515582 NextBio:20871904 Uniprot:F1N0L2
Length = 2798
Score = 140 (54.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2394 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2444
Score = 35 (17.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 51 AVSFIMYRRYRWNKPQTLSDKCSNPDSSGYIDDSTLR 87
AV ++R P + S ++ YID S LR
Sbjct: 1717 AVRNTQHQRAASTAPSSTSTPAASSAGLIYIDPSNLR 1753
>UNIPROTKB|F1PBF9 [details] [associations]
symbol:UBR5 "Uncharacterized protein" species:9615 "Canis
lupus familiaris" [GO:0043130 "ubiquitin binding" evidence=IEA]
[GO:0008270 "zinc ion binding" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0004842 "ubiquitin-protein ligase
activity" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR002004
InterPro:IPR003126 InterPro:IPR024725 Pfam:PF00658 Pfam:PF02207
Pfam:PF11547 PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 GO:GO:0008270 GO:GO:0016567
GO:GO:0003723 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 GeneTree:ENSGT00640000091448 KO:K10593 OMA:ERCDGNR
InterPro:IPR013993 SMART:SM00396 CTD:51366 EMBL:AAEX03008693
EMBL:AAEX03008694 RefSeq:XP_532290.2 Ensembl:ENSCAFT00000000972
GeneID:475055 KEGG:cfa:475055 Uniprot:F1PBF9
Length = 2798
Score = 140 (54.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2394 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2444
Score = 35 (17.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 51 AVSFIMYRRYRWNKPQTLSDKCSNPDSSGYIDDSTLR 87
AV ++R P + S ++ YID S LR
Sbjct: 1717 AVRNTQHQRATSTAPSSTSTPAASSAGLIYIDPSNLR 1753
>UNIPROTKB|J3KMW7 [details] [associations]
symbol:UBR5 "E3 ubiquitin-protein ligase UBR5" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR002004
InterPro:IPR003126 InterPro:IPR024725 Pfam:PF00658 Pfam:PF02207
Pfam:PF11547 PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 GO:GO:0008270 GO:GO:0016567
GO:GO:0003723 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 ChiTaRS:UBR5 InterPro:IPR013993 SMART:SM00396
EMBL:AP002907 HGNC:HGNC:16806 EMBL:AP002981
ProteinModelPortal:J3KMW7 Ensembl:ENST00000220959 Uniprot:J3KMW7
Length = 2798
Score = 140 (54.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2394 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2444
Score = 35 (17.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 51 AVSFIMYRRYRWNKPQTLSDKCSNPDSSGYIDDSTLR 87
AV ++R P + S ++ YID S LR
Sbjct: 1717 AVRNTQHQRAASTAPSSTSTPAASSAGLIYIDPSNLR 1753
>UNIPROTKB|O95071 [details] [associations]
symbol:UBR5 "E3 ubiquitin-protein ligase UBR5" species:9606
"Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA] [GO:0008270
"zinc ion binding" evidence=IEA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0006281 "DNA repair" evidence=IEA] [GO:0005737
"cytoplasm" evidence=IBA] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IBA] [GO:1901315 "negative regulation of histone H2A
K63-linked ubiquitination" evidence=IMP] [GO:0006974 "response to
DNA damage stimulus" evidence=IDA;IMP] [GO:2000780 "negative
regulation of double-strand break repair" evidence=IMP] [GO:0004842
"ubiquitin-protein ligase activity" evidence=TAS] [GO:0006511
"ubiquitin-dependent protein catabolic process" evidence=TAS]
[GO:0008283 "cell proliferation" evidence=TAS] [GO:0005634
"nucleus" evidence=IDA] [GO:0050847 "progesterone receptor
signaling pathway" evidence=IDA] [GO:0005515 "protein binding"
evidence=IPI] [GO:0035413 "positive regulation of catenin import
into nucleus" evidence=IMP] [GO:0033160 "positive regulation of
protein import into nucleus, translocation" evidence=IMP]
[GO:0090263 "positive regulation of canonical Wnt receptor
signaling pathway" evidence=IMP] [GO:0000209 "protein
polyubiquitination" evidence=IDA] [GO:0034450 "ubiquitin-ubiquitin
ligase activity" evidence=IDA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 InterPro:IPR003126 InterPro:IPR024725
Pfam:PF00658 Pfam:PF02207 Pfam:PF11547 PROSITE:PS50237
PROSITE:PS51157 PROSITE:PS51309 SMART:SM00119 SMART:SM00517
UniPathway:UPA00143 GO:GO:0005634 GO:GO:0005737 GO:GO:0046872
GO:GO:0008283 GO:GO:0008270 GO:GO:0006281 GO:GO:0006974
GO:GO:0003723 Gene3D:2.130.10.30 InterPro:IPR009091 SUPFAM:SSF50985
GO:GO:0090263 GO:GO:0000209 GO:GO:0042787 GO:GO:0035413
GO:GO:0034450 GO:GO:0033160 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 eggNOG:COG5021 KO:K10593 OMA:ERCDGNR ChiTaRS:UBR5
InterPro:IPR013993 SMART:SM00396 GO:GO:0050847 GO:GO:2000780
GO:GO:1901315 PDB:2QHO PDBsum:2QHO EMBL:AF006010 EMBL:U95000
EMBL:AB020703 EMBL:BC137234 IPI:IPI00026320 RefSeq:NP_056986.2
UniGene:Hs.492445 PDB:1I2T PDB:3PT3 PDBsum:1I2T PDBsum:3PT3
ProteinModelPortal:O95071 SMR:O95071 DIP:DIP-32930N IntAct:O95071
MINT:MINT-196086 STRING:O95071 PhosphoSite:O95071 PaxDb:O95071
PRIDE:O95071 Ensembl:ENST00000520539 GeneID:51366 KEGG:hsa:51366
UCSC:uc003ykr.2 CTD:51366 GeneCards:GC08M103265 H-InvDB:HIX0025542
HGNC:HGNC:16806 HPA:HPA024728 MIM:608413 neXtProt:NX_O95071
PharmGKB:PA162408175 HOGENOM:HOG000046848 HOVERGEN:HBG096012
InParanoid:O95071 OrthoDB:EOG4QVCB2 EvolutionaryTrace:O95071
GenomeRNAi:51366 NextBio:54837 ArrayExpress:O95071 Bgee:O95071
CleanEx:HS_UBR5 Genevestigator:O95071 GermOnline:ENSG00000104517
Uniprot:O95071
Length = 2799
Score = 140 (54.3 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2394 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2444
Score = 35 (17.4 bits), Expect = 2.2e-08, Sum P(2) = 2.2e-08
Identities = 11/37 (29%), Positives = 16/37 (43%)
Query: 51 AVSFIMYRRYRWNKPQTLSDKCSNPDSSGYIDDSTLR 87
AV ++R P + S ++ YID S LR
Sbjct: 1717 AVRNTQHQRAASTAPSSTSTPAASSAGLIYIDPSNLR 1753
>UNIPROTKB|I3LGM1 [details] [associations]
symbol:LOC100738301 "Uncharacterized protein" species:9823
"Sus scrofa" [GO:0005622 "intracellular" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0003723 "RNA
binding" evidence=IEA] Pfam:PF00632 InterPro:IPR000569
InterPro:IPR002004 Pfam:PF00658 PROSITE:PS50237 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 GO:GO:0016567 GO:GO:0003723
GO:GO:0005622 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 GeneTree:ENSGT00640000091448 EMBL:CU207279
Ensembl:ENSSSCT00000023965 OMA:GRPRITH Uniprot:I3LGM1
Length = 1000
Score = 140 (54.3 bits), Expect = 2.6e-08, P = 2.6e-08
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 596 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 646
>UNIPROTKB|F1P0U1 [details] [associations]
symbol:Gga.55416 "Uncharacterized protein" species:9031
"Gallus gallus" [GO:0003723 "RNA binding" evidence=IEA] [GO:0004842
"ubiquitin-protein ligase activity" evidence=IEA] [GO:0005622
"intracellular" evidence=IEA] [GO:0008270 "zinc ion binding"
evidence=IEA] [GO:0043130 "ubiquitin binding" evidence=IEA]
Pfam:PF00632 InterPro:IPR000569 InterPro:IPR002004
InterPro:IPR003126 InterPro:IPR024725 Pfam:PF00658 Pfam:PF02207
Pfam:PF11547 PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 GO:GO:0008270 GO:GO:0016567
GO:GO:0003723 GO:GO:0005622 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0004842 Gene3D:1.10.1900.10 SUPFAM:SSF63570
SUPFAM:SSF56204 GeneTree:ENSGT00640000091448 OMA:ERCDGNR
InterPro:IPR013993 SMART:SM00396 EMBL:AADN02023127
EMBL:AADN02023128 EMBL:AADN02023129 EMBL:AADN02023130
EMBL:AADN02023131 EMBL:AADN02023132 EMBL:AADN02023133
EMBL:AADN02023134 EMBL:AADN02023135 EMBL:AADN02023136
EMBL:AADN02023137 EMBL:AADN02023138 EMBL:AADN02023139
IPI:IPI00575408 Ensembl:ENSGALT00000025850 Uniprot:F1P0U1
Length = 2775
Score = 140 (54.3 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2371 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2421
>MGI|MGI:1918040 [details] [associations]
symbol:Ubr5 "ubiquitin protein ligase E3 component
n-recognin 5" species:10090 "Mus musculus" [GO:0000209 "protein
polyubiquitination" evidence=ISO] [GO:0003723 "RNA binding"
evidence=IEA] [GO:0004842 "ubiquitin-protein ligase activity"
evidence=IBA] [GO:0005622 "intracellular" evidence=IEA] [GO:0005634
"nucleus" evidence=ISO;IBA] [GO:0005737 "cytoplasm" evidence=IBA]
[GO:0006281 "DNA repair" evidence=IEA] [GO:0006464 "cellular
protein modification process" evidence=IEA] [GO:0006974 "response
to DNA damage stimulus" evidence=ISO] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0016874 "ligase activity" evidence=IEA]
[GO:0033160 "positive regulation of protein import into nucleus,
translocation" evidence=ISO] [GO:0034450 "ubiquitin-ubiquitin
ligase activity" evidence=ISO] [GO:0035413 "positive regulation of
catenin import into nucleus" evidence=ISO] [GO:0042787 "protein
ubiquitination involved in ubiquitin-dependent protein catabolic
process" evidence=IBA] [GO:0043130 "ubiquitin binding"
evidence=IEA] [GO:0046872 "metal ion binding" evidence=IEA]
[GO:0050847 "progesterone receptor signaling pathway"
evidence=ISO;IBA] [GO:0090263 "positive regulation of canonical Wnt
receptor signaling pathway" evidence=ISO] [GO:1901315 "negative
regulation of histone H2A K63-linked ubiquitination" evidence=ISO]
[GO:2000780 "negative regulation of double-strand break repair"
evidence=ISO] Pfam:PF00632 InterPro:IPR000569 InterPro:IPR002004
InterPro:IPR003126 InterPro:IPR024725 Pfam:PF00658 Pfam:PF02207
Pfam:PF11547 PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 UniPathway:UPA00143 MGI:MGI:1918040
GO:GO:0005634 GO:GO:0005737 GO:GO:0046872 GO:GO:0008270
GO:GO:0006281 GO:GO:0006974 GO:GO:0003723 Gene3D:2.130.10.30
InterPro:IPR009091 SUPFAM:SSF50985 GO:GO:0004842 GO:GO:0042787
Gene3D:1.10.1900.10 SUPFAM:SSF63570 SUPFAM:SSF56204 eggNOG:COG5021
KO:K10593 ChiTaRS:UBR5 InterPro:IPR013993 SMART:SM00396
GO:GO:0050847 GO:GO:2000780 GO:GO:1901315 CTD:51366
HOVERGEN:HBG096012 OrthoDB:EOG4QVCB2 EMBL:AY550908 EMBL:AK122398
EMBL:BC049162 EMBL:BC049224 EMBL:BC057458 EMBL:BC057923
EMBL:AK014485 IPI:IPI00831567 RefSeq:NP_001074828.2
RefSeq:NP_001106192.1 UniGene:Mm.476840 ProteinModelPortal:Q80TP3
SMR:Q80TP3 DIP:DIP-56890N IntAct:Q80TP3 STRING:Q80TP3
PhosphoSite:Q80TP3 PaxDb:Q80TP3 PRIDE:Q80TP3 GeneID:70790
KEGG:mmu:70790 UCSC:uc007vno.1 NextBio:332258 Genevestigator:Q80TP3
GermOnline:ENSMUSG00000037487 Uniprot:Q80TP3
Length = 2792
Score = 140 (54.3 bits), Expect = 8.4e-08, P = 8.4e-08
Identities = 27/51 (52%), Positives = 38/51 (74%)
Query: 111 KQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+E
Sbjct: 2388 RQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDE 2438
>UNIPROTKB|Q4VXT8 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 EMBL:AL008725 GO:GO:0003723 SUPFAM:SSF63570
EMBL:AL109839 UniGene:Hs.641481 HGNC:HGNC:15797
HOGENOM:HOG000136546 IPI:IPI01016033 SMR:Q4VXT8 STRING:Q4VXT8
Ensembl:ENST00000372822 Uniprot:Q4VXT8
Length = 134
Score = 109 (43.4 bits), Expect = 2.1e-06, P = 2.1e-06
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 71 KCSNPDSSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELA 130
KCS+ S Y AVH+ GQEPLT++MLAAA EQKQM+G + +++R +
Sbjct: 2 KCSSAAHSTYRVQEP--AVHIPGQEPLTASMLAAAPLHEQKQMIGT-CYLVLKRWSDWMV 58
Query: 131 GKITGMLLEID 141
+LL D
Sbjct: 59 LSFLPLLLSCD 69
>CGD|CAL0001392 [details] [associations]
symbol:orf19.3037 species:5476 "Candida albicans" [GO:0010494
"cytoplasmic stress granule" evidence=IEA] [GO:0005840 "ribosome"
evidence=IEA] [GO:0005634 "nucleus" evidence=IEA] [GO:0005829
"cytosol" evidence=IEA] [GO:0006406 "mRNA export from nucleus"
evidence=IEA] [GO:0006446 "regulation of translational initiation"
evidence=IEA] [GO:0060211 "regulation of nuclear-transcribed mRNA
poly(A) tail shortening" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=IEA] InterPro:IPR000504 InterPro:IPR002004
InterPro:IPR006515 InterPro:IPR012677 Pfam:PF00076 Pfam:PF00658
PROSITE:PS50102 PROSITE:PS51309 SMART:SM00360 CGD:CAL0001392
GO:GO:0005634 GO:GO:0005737 EMBL:AACQ01000017 EMBL:AACQ01000015
GO:GO:0006417 GO:GO:0000166 GO:GO:0006397 Gene3D:3.30.70.330
GO:GO:0003723 GO:GO:0051028 eggNOG:COG0724 KO:K13126
Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628 HSSP:P11940
RefSeq:XP_721264.1 RefSeq:XP_721535.1 ProteinModelPortal:Q5AI15
SMR:Q5AI15 STRING:Q5AI15 PRIDE:Q5AI15 GeneID:3636891 GeneID:3637079
KEGG:cal:CaO19.10555 KEGG:cal:CaO19.3037 Uniprot:Q5AI15
Length = 629
Score = 116 (45.9 bits), Expect = 2.1e-05, P = 2.1e-05
Identities = 26/65 (40%), Positives = 43/65 (66%)
Query: 102 LAAAQPQEQ-KQMLGERLFPLI----QRMYPELAGKITGMLLEIDNAELLYMLEHNESLK 156
+ ++ PQ+Q K++LGE L+P I + PE AGKITGM+L ++N E+L +L+ +E
Sbjct: 544 IISSVPQDQQKRILGEELYPKIVATGKAQEPEAAGKITGMMLGLENQEILDLLDDDELFN 603
Query: 157 SKVEE 161
+ E+
Sbjct: 604 NHFED 608
>UNIPROTKB|F2Z2Z0 [details] [associations]
symbol:PABPC1L "Polyadenylate-binding protein 1-like"
species:9606 "Homo sapiens" [GO:0003723 "RNA binding" evidence=IEA]
InterPro:IPR002004 EMBL:AL008725 GO:GO:0003723 SUPFAM:SSF63570
EMBL:AL109839 HGNC:HGNC:15797 ChiTaRS:PABPC1L IPI:IPI00647824
ProteinModelPortal:F2Z2Z0 SMR:F2Z2Z0 Ensembl:ENST00000479873
ArrayExpress:F2Z2Z0 Bgee:F2Z2Z0 Uniprot:F2Z2Z0
Length = 174
Score = 109 (43.4 bits), Expect = 2.3e-05, P = 2.3e-05
Identities = 29/71 (40%), Positives = 40/71 (56%)
Query: 71 KCSNPDSSGYIDDSTLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELA 130
KCS+ S Y AVH+ GQEPLT++MLAAA EQKQM+G + +++R +
Sbjct: 61 KCSSAAHSTYRVQEP--AVHIPGQEPLTASMLAAAPLHEQKQMIGT-CYLVLKRWSDWMV 117
Query: 131 GKITGMLLEID 141
+LL D
Sbjct: 118 LSFLPLLLSCD 128
>DICTYBASE|DDB_G0293558 [details] [associations]
symbol:pabpc1A "polyadenylate binding protein (PABP)"
species:44689 "Dictyostelium discoideum" [GO:0045335 "phagocytic
vesicle" evidence=IDA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0003676 "nucleic acid binding" evidence=IEA] [GO:0000166
"nucleotide binding" evidence=IEA] [GO:0008143 "poly(A) RNA
binding" evidence=ISS] [GO:0006378 "mRNA polyadenylation"
evidence=ISS] [GO:0005737 "cytoplasm" evidence=IEA;ISS] [GO:0006397
"mRNA processing" evidence=IEA] [GO:0005634 "nucleus" evidence=IEA]
[GO:0044351 "macropinocytosis" evidence=RCA] InterPro:IPR000504
InterPro:IPR002004 InterPro:IPR006515 InterPro:IPR012677
Pfam:PF00076 Pfam:PF00658 PROSITE:PS50102 PROSITE:PS51309
SMART:SM00360 dictyBase:DDB_G0293558 GO:GO:0005634 GO:GO:0045335
GenomeReviews:CM000155_GR GO:GO:0000166 Gene3D:3.30.70.330
GO:GO:0006378 EMBL:AAFI02000218 eggNOG:COG0724 GO:GO:0008143
KO:K13126 Gene3D:1.10.1900.10 SUPFAM:SSF63570 TIGRFAMs:TIGR01628
HSSP:P11940 OMA:ITEKNQQ RefSeq:XP_629007.1
ProteinModelPortal:Q54BM2 SMR:Q54BM2 STRING:Q54BM2 PRIDE:Q54BM2
EnsemblProtists:DDB0233359 GeneID:8629291 KEGG:ddi:DDB_G0293558
ProtClustDB:CLSZ2846557 Uniprot:Q54BM2
Length = 565
Score = 111 (44.1 bits), Expect = 0.00017, P = 0.00017
Identities = 24/54 (44%), Positives = 33/54 (61%)
Query: 109 EQKQMLGERLFPLIQRMYPELAGKITGMLLE-IDNAELLYMLEHNESLKSKVEE 161
+Q LGE L+PLI P+LAGKITGMLL+ + EL + + + L K+ E
Sbjct: 504 QQNVALGEHLYPLIHNSQPDLAGKITGMLLDSLPVEELFTLTQRQDLLADKIRE 557
>FB|FBgn0002431 [details] [associations]
symbol:hyd "hyperplastic discs" species:7227 "Drosophila
melanogaster" [GO:0008585 "female gonad development" evidence=IMP]
[GO:0007444 "imaginal disc development" evidence=NAS;IMP]
[GO:0005737 "cytoplasm" evidence=IDA] [GO:0005634 "nucleus"
evidence=NAS;IDA] [GO:0007283 "spermatogenesis" evidence=IMP]
[GO:0007446 "imaginal disc growth" evidence=IMP] [GO:0004842
"ubiquitin-protein ligase activity" evidence=ISS;IBA;NAS]
[GO:0007455 "eye-antennal disc morphogenesis" evidence=IMP]
[GO:0007281 "germ cell development" evidence=NAS] [GO:0042127
"regulation of cell proliferation" evidence=NAS] [GO:0045879
"negative regulation of smoothened signaling pathway" evidence=NAS]
[GO:0048749 "compound eye development" evidence=NAS] [GO:0030162
"regulation of proteolysis" evidence=NAS] [GO:0008270 "zinc ion
binding" evidence=IEA] [GO:0003723 "RNA binding" evidence=IEA]
[GO:0043130 "ubiquitin binding" evidence=IEA] [GO:0007112 "male
meiosis cytokinesis" evidence=IMP] [GO:0007289 "spermatid nucleus
differentiation" evidence=IMP] [GO:0042787 "protein ubiquitination
involved in ubiquitin-dependent protein catabolic process"
evidence=IBA] Pfam:PF00632 InterPro:IPR000569 InterPro:IPR002004
InterPro:IPR003126 InterPro:IPR024725 Pfam:PF00658 Pfam:PF02207
Pfam:PF11547 PROSITE:PS50237 PROSITE:PS51157 PROSITE:PS51309
SMART:SM00119 SMART:SM00517 EMBL:AE014297 GO:GO:0005634
GO:GO:0005737 GO:GO:0008585 GO:GO:0046872 GO:GO:0008270
GO:GO:0030162 GO:GO:0003723 Gene3D:2.130.10.30 InterPro:IPR009091
SUPFAM:SSF50985 GO:GO:0007289 InterPro:IPR015940 PROSITE:PS50030
GO:GO:0004842 GO:GO:0007112 GO:GO:0048749 GO:GO:0042787
GO:GO:0007455 GO:GO:0045879 GO:GO:0007446 Gene3D:1.10.1900.10
SUPFAM:SSF63570 SUPFAM:SSF56204 eggNOG:COG5021
GeneTree:ENSGT00640000091448 EMBL:L14644 PIR:T08437
RefSeq:NP_524296.2 ProteinModelPortal:P51592 SMR:P51592
IntAct:P51592 STRING:P51592 PaxDb:P51592 EnsemblMetazoa:FBtr0082090
GeneID:41181 KEGG:dme:Dmel_CG9484 CTD:41181 FlyBase:FBgn0002431
InParanoid:P51592 KO:K10593 OMA:ERCDGNR OrthoDB:EOG4QBZM4
PhylomeDB:P51592 ChiTaRS:UBR5 GenomeRNAi:41181 NextBio:822597
Bgee:P51592 GermOnline:CG9484 InterPro:IPR013993 SMART:SM00396
Uniprot:P51592
Length = 2885
Score = 111 (44.1 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 24/50 (48%), Positives = 33/50 (66%)
Query: 112 QMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEE 161
Q +GERL+P I + A KITGMLLEI +LL ++ +E+L+ KV E
Sbjct: 2502 QQIGERLYPKIHSINQTHAPKITGMLLEIPTPQLLSVISSDETLRQKVNE 2551
Score = 39 (18.8 bits), Expect = 0.00090, Sum P(2) = 0.00090
Identities = 15/42 (35%), Positives = 19/42 (45%)
Query: 5 APPDSPRA--HQAHAEDLSNPWSGEGGVNVAMISGISFGALA 44
+PPDSP + LS S A +S I+FGA A
Sbjct: 967 SPPDSPSGGVEKKSLVGLSVARSIPTVSTSAYVSSIAFGASA 1008
Parameters:
V=100
filter=SEG
E=0.001
ctxfactor=1.00
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
+0 0 BLOSUM62 0.315 0.131 0.381 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+0 0 179 162 0.00079 107 3 11 22 0.40 32
30 0.44 34
Statistics:
Database: /share/blast/go-seqdb.fasta
Title: go_20130330-seqdb.fasta
Posted: 5:47:42 AM PDT Apr 1, 2013
Created: 5:47:42 AM PDT Apr 1, 2013
Format: XDF-1
# of letters in database: 169,044,731
# of sequences in database: 368,745
# of database sequences satisfying E: 86
No. of states in DFA: 588 (63 KB)
Total size of DFA: 144 KB (2088 KB)
Time to generate neighborhood: 0.00u 0.00s 0.00t Elapsed: 00:00:00
No. of threads or processors used: 24
Search cpu time: 16.31u 0.09s 16.40t Elapsed: 00:00:18
Total cpu time: 16.32u 0.09s 16.41t Elapsed: 00:00:18
Start: Thu Aug 15 12:17:16 2013 End: Thu Aug 15 12:17:34 2013