RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14481
(179 letters)
>d1g9la_ a.144.1.1 (A:) poly(A) binding protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 144
Score = 137 bits (346), Expect = 1e-42
Identities = 75/92 (81%), Positives = 84/92 (91%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
AVHVQGQEPLT++MLA+A PQEQKQMLGERLFPLIQ M+P LAGKITGMLLEIDN+ELL+
Sbjct: 44 AVHVQGQEPLTASMLASAPPQEQKQMLGERLFPLIQAMHPTLAGKITGMLLEIDNSELLH 103
Query: 148 MLEHNESLKSKVEEAVAVLQAHQAKQAAVKKE 179
MLE ESL+SKV+EAVAVLQAHQAK+AA K
Sbjct: 104 MLESPESLRSKVDEAVAVLQAHQAKEAAQKAV 135
>d1nmra_ a.144.1.1 (A:) poly(A) binding protein {Protozoan
(Trypanosoma cruzi) [TaxId: 5693]}
Length = 85
Score = 128 bits (324), Expect = 4e-40
Identities = 38/83 (45%), Positives = 54/83 (65%), Gaps = 2/83 (2%)
Query: 88 AVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLY 147
++ QGQ ST+LA P++QK +LGERL+ I + P A K+TGMLLE+DN E+L
Sbjct: 3 SLASQGQN--LSTVLANLTPEQQKNVLGERLYNHIVAINPAAAAKVTGMLLEMDNGEILN 60
Query: 148 MLEHNESLKSKVEEAVAVLQAHQ 170
+L+ L +KV+EA+ VL H
Sbjct: 61 LLDTPGLLDAKVQEALEVLNRHM 83
>d1ifwa_ a.144.1.1 (A:) poly(A) binding protein {Baker's yeast
(Saccharomyces cerevisiae) [TaxId: 4932]}
Length = 92
Score = 116 bits (291), Expect = 6e-35
Identities = 25/86 (29%), Positives = 45/86 (52%), Gaps = 2/86 (2%)
Query: 96 PLTSTMLAAAQPQEQKQMLGERLFPLIQRMY--PELAGKITGMLLEIDNAELLYMLEHNE 153
P + Q+Q+Q LGE+L+ + E AGKITGM+L++ E+ +LE +E
Sbjct: 6 PRNANDNNQFYQQKQRQALGEQLYKKVSAKTSNEEAAGKITGMILDLPPQEVFPLLESDE 65
Query: 154 SLKSKVEEAVAVLQAHQAKQAAVKKE 179
+ +EA A ++ + +Q ++
Sbjct: 66 LFEQHYKEASAAYESFKKEQEQQTEQ 91
>d1i2ta_ a.144.1.1 (A:) hyperplastic discs protein {Human (Homo
sapiens) [TaxId: 9606]}
Length = 61
Score = 108 bits (271), Expect = 3e-32
Identities = 30/60 (50%), Positives = 44/60 (73%)
Query: 110 QKQMLGERLFPLIQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKSKVEEAVAVLQAH 169
+Q LGERL+P +Q M P A KITGMLLE+ A+LL +L +SL+++V+EA+ ++ AH
Sbjct: 1 HRQALGERLYPRVQAMQPAFASKITGMLLELSPAQLLLLLASEDSLRARVDEAMELIIAH 60
>d1u8fo2 d.81.1.1 (O:152-315) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Human(Homo sapiens), liver
isoform [TaxId: 9606]}
Length = 164
Score = 29.1 bits (65), Expect = 0.19
Identities = 12/48 (25%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 122 IQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS-KVEEAVAVLQA 168
+ ++ PEL GK+TGM + A + + K K ++ V++
Sbjct: 66 VGKVIPELNGKLTGMAFRVPTANVSVVDLTCRLEKPAKYDDIKKVVKQ 113
>d2sgaa_ b.47.1.1 (A:) Protease A {Streptomyces griseus, strain k1
[TaxId: 1911]}
Length = 181
Score = 27.4 bits (60), Expect = 0.76
Identities = 10/56 (17%), Positives = 16/56 (28%), Gaps = 2/56 (3%)
Query: 54 FIMYRRYRWNKPQTLSDKCSNPDSSG--YIDDSTLRAVHVQGQEPLTSTMLAAAQP 107
+ Y ++ C+ P SG ST + G + QP
Sbjct: 113 TVNYGSSGIVYGMIQTNVCAQPGDSGGSLFAGSTALGLTSGGSGNCRTGGTTFYQP 168
>d1obfo2 d.81.1.1 (O:153-314) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Achromobacter xylosoxidans
[TaxId: 85698]}
Length = 162
Score = 27.2 bits (60), Expect = 0.84
Identities = 11/48 (22%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 122 IQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS-KVEEAVAVLQA 168
+ + PEL GK+ G + + + + + ++ VEE +L+A
Sbjct: 66 VGDVLPELDGKLNGYAIRVPTINVSIVDLSFVAKRNTTVEEVNGILKA 113
>d1tlqa_ a.195.1.1 (A:) Hypothetical protein YpjQ {Bacillus subtilis
[TaxId: 1423]}
Length = 161
Score = 26.2 bits (58), Expect = 1.5
Identities = 8/43 (18%), Positives = 20/43 (46%), Gaps = 1/43 (2%)
Query: 42 ALALVTLFGAVSFIMYRRYRWNKPQTLSDKCSNPDSSG-YIDD 83
L++V ++G++ + K + + +PD ++DD
Sbjct: 98 PLSIVNVYGSIGLTNFGYLDKEKIGIIKELDESPDGIHTFLDD 140
>d1vq0a1 d.193.1.1 (A:1-230) Heat shock protein 33, Hsp33
{Thermotoga maritima [TaxId: 2336]}
Length = 230
Score = 26.5 bits (58), Expect = 1.8
Identities = 14/132 (10%), Positives = 34/132 (25%), Gaps = 16/132 (12%)
Query: 33 AMISGISFGALALVTLFGAVSFIMYRRYRWNKPQT----LSDKCSNPDSSGYIDDS---- 84
+ G + G + R P L D + Y S
Sbjct: 92 VELPLNEKGKFDVAGAIGQGVLRVVRDLGLKTPFVSQVPLVSGEIAEDLAYYFAVSEQIP 151
Query: 85 ---TLRAVHVQGQEPLTSTMLAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGMLLEID 141
++ + + + +Q E + I+ + I+ + E +
Sbjct: 152 SAFSIGVLVDSDGVKIAGGFAVQIIDRTLEQEKVEMIEKNIKNL-----PSISKLFQEAE 206
Query: 142 NAELLYMLEHNE 153
++L + +
Sbjct: 207 PLDVLERIFGEK 218
>d3cmco2 d.81.1.1 (O:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Bacillus stearothermophilus, nca
1503 [TaxId: 1422]}
Length = 163
Score = 26.4 bits (58), Expect = 1.8
Identities = 15/48 (31%), Positives = 23/48 (47%), Gaps = 1/48 (2%)
Query: 122 IQRMYPELAGKITGMLLEIDNAELLYMLEHNESLKS-KVEEAVAVLQA 168
+ + PEL GK+ GM + + + + E K VEE A L+A
Sbjct: 65 VALVLPELKGKLNGMAMRVPTPNVSVVDLVAELEKEVTVEEVNAALKA 112
>d1y9ia_ a.195.1.1 (A:) Low temperature requirement C protein, LtrC
{Listeria monocytogenes [TaxId: 1639]}
Length = 159
Score = 25.4 bits (56), Expect = 3.1
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 42 ALALVTLFGAVSFIMYRRYRWNKP 65
AL++V ++G++ F Y KP
Sbjct: 97 ALSIVNVYGSIGFTNYGYIDKVKP 120
>d1rfza_ a.195.1.1 (A:) YutG homologue {Bacillus stearothermophilus
[TaxId: 1422]}
Length = 164
Score = 25.5 bits (56), Expect = 3.2
Identities = 8/24 (33%), Positives = 14/24 (58%)
Query: 42 ALALVTLFGAVSFIMYRRYRWNKP 65
AL++V ++G++ F Y KP
Sbjct: 104 ALSIVNVYGSIGFTNYGYIDKQKP 127
>d1otga_ d.80.1.2 (A:) 5-carboxymethyl-2-hydroxymuconate isomerase
(CHMI) {Escherichia coli [TaxId: 562]}
Length = 125
Score = 25.1 bits (55), Expect = 3.7
Identities = 13/41 (31%), Positives = 19/41 (46%), Gaps = 1/41 (2%)
Query: 102 LAAAQPQEQKQMLGERLFPLIQRMYPELAGKITGML-LEID 141
+ A + E +Q GE LF LI+ + L L EI+
Sbjct: 67 IGAGRSLESRQQAGEMLFELIKTHFAALMESRLLALSFEIE 107
>d1rm4a2 d.81.1.1 (A:149-312) Glyceraldehyde-3-phosphate
dehydrogenase (GAPDH) {Spinach (Spinacia oleracea)
[TaxId: 3562]}
Length = 163
Score = 25.3 bits (55), Expect = 4.0
Identities = 5/15 (33%), Positives = 9/15 (60%)
Query: 122 IQRMYPELAGKITGM 136
+ + P L GK+ G+
Sbjct: 65 VALVLPNLKGKLNGI 79
>d2h8aa1 f.56.1.1 (A:9-147) Microsomal glutathione S-transferase 1
{Rat (Rattus norvegicus) [TaxId: 10116]}
Length = 139
Score = 24.5 bits (53), Expect = 5.8
Identities = 10/52 (19%), Positives = 16/52 (30%)
Query: 6 PPDSPRAHQAHAEDLSNPWSGEGGVNVAMISGISFGALALVTLFGAVSFIMY 57
R +AH DL N G + +SG + + I +
Sbjct: 57 DEKVERVRRAHLNDLENIVPFLGIGLLYSLSGPDLSTALIHFRIFVGARIYH 108
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.315 0.130 0.370
Gapped
Lambda K H
0.267 0.0613 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 622,814
Number of extensions: 26561
Number of successful extensions: 66
Number of sequences better than 10.0: 1
Number of HSP's gapped: 64
Number of HSP's successfully gapped: 15
Length of query: 179
Length of database: 2,407,596
Length adjustment: 80
Effective length of query: 99
Effective length of database: 1,309,196
Effective search space: 129610404
Effective search space used: 129610404
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 50 (23.3 bits)