BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14482
(95 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|2D8Q|A Chain A, Solution Structure Of The Mynd Domain Of The Human Zinc
Finger Mynd Domain-Containing Protein 10
Length = 70
Score = 39.7 bits (91), Expect = 4e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
C C A ++CS CQ +YCCRE Q HW+KH C
Sbjct: 18 CAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 54
>pdb|2DAN|A Chain A, The Solution Structure Of The Mynd Domain
(Leu384-Cys430) Of Human Zinc Finger Mynd Domain
Containing Protein 10
Length = 60
Score = 39.3 bits (90), Expect = 6e-04, Method: Compositional matrix adjust.
Identities = 18/37 (48%), Positives = 22/37 (59%)
Query: 6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
C C A ++CS CQ +YCCRE Q HW+KH C
Sbjct: 18 CAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 54
>pdb|3S7B|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7D|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7F|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
pdb|3S7J|A Chain A, Structural Basis Of Substrate Methylation And Inhibition
Of Smyd2
Length = 433
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 16 KCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSIKAGEVVL 70
KC C+ +YC E QK W HK C PM V G + S +++ +L
Sbjct: 64 KCGRCKQAFYCNVECQKEDWPMHKLECSPM-----VVFGENWNPSETVRLTARIL 113
>pdb|3TG4|A Chain A, Structure Of Smyd2 In Complex With Sam
pdb|3TG5|A Chain A, Structure Of Smyd2 In Complex With P53 And Sah
Length = 433
Score = 30.8 bits (68), Expect = 0.21, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 16 KCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSIKAGEVVL 70
KC C+ +YC E QK W HK C PM V G + S +++ +L
Sbjct: 64 KCGRCKQAFYCNVECQKEDWPMHKLECSPM-----VVFGENWNPSETVRLTARIL 113
>pdb|3RIB|A Chain A, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
pdb|3RIB|B Chain B, Human Lysine Methyltransferase Smyd2 In Complex With
Adohcy
Length = 441
Score = 30.8 bits (68), Expect = 0.22, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 16 KCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSIKAGEVVL 70
KC C+ +YC E QK W HK C PM V G + S +++ +L
Sbjct: 64 KCGRCKQAFYCNVECQKEDWPMHKLECSPM-----VVFGENWNPSETVRLTARIL 113
>pdb|3QWP|A Chain A, Crystal Structure Of Set And Mynd Domain Containing 3;
Zinc Finger Mynd Domain-Containing Protein 1
Length = 429
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 8 LCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCE 49
L G+ +CS C++ YC + QK W HK C+ +K C+
Sbjct: 54 LLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCK 95
>pdb|3OXG|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Iii)
Length = 464
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 8 LCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCE 49
L G+ +CS C++ YC + QK W HK C+ +K C+
Sbjct: 89 LLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCK 130
>pdb|3RU0|A Chain A, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
pdb|3RU0|B Chain B, Cocrystal Structure Of Human Smyd3 With Inhibitor
Sinefungin Bound
Length = 438
Score = 30.4 bits (67), Expect = 0.23, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 8 LCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCE 49
L G+ +CS C++ YC + QK W HK C+ +K C+
Sbjct: 55 LLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCK 96
>pdb|3PDN|A Chain A, Crystal Structure Of Smyd3 In Complex With
Methyltransferase Inhibitor Sinefungin
pdb|3OXL|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form Ii)
Length = 428
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 8 LCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCE 49
L G+ +CS C++ YC + QK W HK C+ +K C+
Sbjct: 53 LLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCK 94
>pdb|3OXF|A Chain A, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
pdb|3OXF|B Chain B, Human Lysine Methyltransferase Smyd3 In Complex With
Adohcy (Form I)
Length = 436
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 8 LCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCE 49
L G+ +CS C++ YC + QK W HK C+ +K C+
Sbjct: 53 LLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCK 94
>pdb|3MEK|A Chain A, Crystal Structure Of Human Histone-Lysine N-
Methyltransferase Smyd3 In Complex With S-Adenosyl-L-
Methionine
Length = 429
Score = 30.4 bits (67), Expect = 0.24, Method: Compositional matrix adjust.
Identities = 15/42 (35%), Positives = 23/42 (54%)
Query: 8 LCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCE 49
L G+ +CS C++ YC + QK W HK C+ +K C+
Sbjct: 54 LLGKEKLXRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCK 95
>pdb|4A24|A Chain A, Structural And Functional Analysis Of The Deaf-1 And
Bs69 Mynd Domains
Length = 47
Score = 28.5 bits (62), Expect = 0.89, Method: Compositional matrix adjust.
Identities = 14/41 (34%), Positives = 20/41 (48%)
Query: 2 FDNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
+ C CG A +C+GC + YC Q+ WK H+ C
Sbjct: 3 MEQSCVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHIC 43
>pdb|2JW6|A Chain A, Solution Structure Of The Deaf1 Mynd Domain
Length = 52
Score = 28.5 bits (62), Expect = 0.92, Method: Compositional matrix adjust.
Identities = 14/37 (37%), Positives = 19/37 (51%)
Query: 6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
C CG A +C+GC + YC Q+ WK H+ C
Sbjct: 12 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHIC 48
>pdb|2OD1|A Chain A, Solution Structure Of The Mynd Domain From Human
Aml1-Eto
Length = 60
Score = 28.5 bits (62), Expect = 1.1, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKH 38
C CG A + CSGC YC Q W+KH
Sbjct: 16 CWNCGRKASETCSGCNTARYCGSFCQHKDWEKH 48
>pdb|2DJ8|A Chain A, Solution Structure Of Zf-Mynd Domain Of Protein Cbfa2ti
(Protein Mtg8)
Length = 60
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKH 38
C CG A + CSGC YC Q W+KH
Sbjct: 18 CWNCGRKASETCSGCNTARYCGSFCQHKDWEKH 50
>pdb|3N71|A Chain A, Crystal Structure Of Cardiac Specific Histone
Methyltransferase Smyd1
Length = 490
Score = 28.1 bits (61), Expect = 1.2, Method: Compositional matrix adjust.
Identities = 12/31 (38%), Positives = 17/31 (54%)
Query: 16 KCSGCQLIYYCCREHQKIHWKKHKSHCRPMK 46
+C C+ +YC R QK W HK+ C +K
Sbjct: 64 RCGQCKFAHYCDRTCQKDAWLNHKNECAAIK 94
>pdb|3QWV|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Cofactor Product Adohcy
pdb|3QWW|A Chain A, Crystal Structure Of Histone Lysine Methyltransferase
Smyd2 In Complex With The Methyltransferase Inhibitor
Sinefungin
Length = 433
Score = 27.7 bits (60), Expect = 1.5, Method: Compositional matrix adjust.
Identities = 18/55 (32%), Positives = 25/55 (45%), Gaps = 5/55 (9%)
Query: 16 KCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIASRSIKAGEVVL 70
KC C+ +YC E QK W HK C M VLG + S +++ +L
Sbjct: 64 KCGRCKQAFYCDVECQKEDWPLHKLECSSM-----VVLGENWNPSETVRLTARIL 113
>pdb|2ODD|A Chain A, Solution Structure Of The Mynd Domain From Aml1-Eto
Complexed With Smrt, A Corepressor
Length = 64
Score = 27.7 bits (60), Expect = 1.8, Method: Compositional matrix adjust.
Identities = 14/33 (42%), Positives = 16/33 (48%)
Query: 6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKH 38
C CG A + CSGC YC Q W+KH
Sbjct: 20 CWNCGRKASETCSGCNTARYCGSFCQHKDWEKH 52
>pdb|4I6V|A Chain A, The Crystal Structure Of An Amidohydrolase 2 From
Planctomyces Limnophilus Dsm 3776
pdb|4I6V|B Chain B, The Crystal Structure Of An Amidohydrolase 2 From
Planctomyces Limnophilus Dsm 3776
pdb|4I6V|C Chain C, The Crystal Structure Of An Amidohydrolase 2 From
Planctomyces Limnophilus Dsm 3776
Length = 434
Score = 27.3 bits (59), Expect = 2.0, Method: Composition-based stats.
Identities = 15/50 (30%), Positives = 26/50 (52%), Gaps = 2/50 (4%)
Query: 24 YYCCREHQKIHWKKHKSHCRPMK--LCEDKVLGRYYIASRSIKAGEVVLR 71
YY + W K + + R + L ED V+GR++ R+++ G +LR
Sbjct: 374 YYSDXYKLEFGWPKFQXYRRVLAKVLFEDFVVGRHWSEERAVELGRQILR 423
>pdb|3B6V|A Chain A, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
pdb|3B6V|B Chain B, Crystal Structure Of The Motor Domain Of Human Kinesin
Family Member 3c In Complex With Adp
Length = 395
Score = 26.2 bits (56), Expect = 5.1, Method: Composition-based stats.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 1/39 (2%)
Query: 40 SHCRPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQG 78
+ CRP+ E+ G I + +K G+V LR P G
Sbjct: 27 ARCRPLSRKEEAA-GHEQILTMDVKLGQVTLRNPRAAPG 64
>pdb|2D8V|A Chain A, Solution Structure Of The B-Box Domain Of The Zinc
Finger Fyve Domain-Containing Protein 19 From Mus
Musculus
Length = 67
Score = 25.4 bits (54), Expect = 9.1, Method: Compositional matrix adjust.
Identities = 13/39 (33%), Positives = 19/39 (48%), Gaps = 4/39 (10%)
Query: 6 CGLCGETAKQKCSGCQLIYYCCR----EHQKIHWKKHKS 40
C +C E A +C+GC YC R H K+H++
Sbjct: 11 CCICNEDATLRCAGCDGDLYCARCFREGHDNFDLKEHQT 49
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.327 0.142 0.493
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,810,608
Number of Sequences: 62578
Number of extensions: 92903
Number of successful extensions: 291
Number of sequences better than 100.0: 31
Number of HSP's better than 100.0 without gapping: 29
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 262
Number of HSP's gapped (non-prelim): 31
length of query: 95
length of database: 14,973,337
effective HSP length: 62
effective length of query: 33
effective length of database: 11,093,501
effective search space: 366085533
effective search space used: 366085533
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 45 (21.9 bits)