RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14482
(95 letters)
>2d8q_A BLU protein, zinc finger MYND domain containing protein 10;
zmynd10, ZF-MYND, structural genomics, NPPSFA; NMR
{Homo sapiens} SCOP: g.85.1.1 PDB: 2dan_A
Length = 70
Score = 56.2 bits (135), Expect = 2e-12
Identities = 18/41 (43%), Positives = 22/41 (53%)
Query: 6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMK 46
C C A ++CS CQ +YCCRE Q HW+KH C
Sbjct: 18 CAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTCVLAA 58
>2dj8_A Protein CBFA2T1; zinc finger MYND domain, protein MTG8,
structural genomics, NPPSFA, national project on
protein structural and functional analyses; NMR {Homo
sapiens} SCOP: g.85.1.1
Length = 60
Score = 54.2 bits (130), Expect = 8e-12
Identities = 15/43 (34%), Positives = 17/43 (39%)
Query: 4 NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMK 46
C CG A + CSGC YC Q W+KH C
Sbjct: 16 ESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICSGPS 58
>2odd_A Protein CBFA2T1; MYND zinc finger, cross-braced topology,
poly-proline, proline-tryptophan interaction, metal
binding protein; NMR {Homo sapiens}
Length = 64
Score = 54.2 bits (130), Expect = 9e-12
Identities = 15/42 (35%), Positives = 17/42 (40%)
Query: 4 NICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPM 45
C CG A + CSGC YC Q W+KH C
Sbjct: 18 ESCWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQT 59
>2od1_A Protein CBFA2T1; zinc finger, cross-braced topology, metal
binding protein; NMR {Homo sapiens}
Length = 60
Score = 53.8 bits (129), Expect = 1e-11
Identities = 15/45 (33%), Positives = 18/45 (40%)
Query: 6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCED 50
C CG A + CSGC YC Q W+KH C +
Sbjct: 16 CWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHICGQTLQAQQ 60
>2jw6_A Deformed epidermal autoregulatory factor 1 homolo; zinc binding
domain, transcription, alternative splicing, DI
mutation, DNA-binding; NMR {Homo sapiens} SCOP:
g.85.1.1
Length = 52
Score = 53.3 bits (128), Expect = 2e-11
Identities = 14/40 (35%), Positives = 19/40 (47%)
Query: 6 CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPM 45
C CG A +C+GC + YC Q+ WK H+ C
Sbjct: 12 CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHICGQS 51
>3n71_A Histone lysine methyltransferase SMYD1; heart development,
transcription; HET: SFG MES; 2.30A {Mus musculus}
Length = 490
Score = 46.5 bits (109), Expect = 2e-07
Identities = 10/54 (18%), Positives = 19/54 (35%), Gaps = 1/54 (1%)
Query: 42 CRPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPC-QMTGPVCLGCLKAI 94
+++ + GR A++ A +V+ E + VC C K
Sbjct: 6 MENVEVFTSEGKGRGLKATKEFWAADVIFAERAYSAVVFDSLINFVCHTCFKRQ 59
Score = 33.8 bits (76), Expect = 0.005
Identities = 16/61 (26%), Positives = 28/61 (45%), Gaps = 2/61 (3%)
Query: 3 DNICGLCGETAKQ--KCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYIAS 60
+ +C C + ++ +C C+ +YC R QK W HK+ C +K +A+
Sbjct: 49 NFVCHTCFKRQEKLHRCGQCKFAHYCDRTCQKDAWLNHKNECAAIKKYGKVPNENIRLAA 108
Query: 61 R 61
R
Sbjct: 109 R 109
>3qwp_A SET and MYND domain-containing protein 3; SMYD3,SET and MYND
domain, zinc finger MYND domain-containin 1, structural
genomics; HET: SAM; 1.53A {Homo sapiens} PDB: 3mek_A*
3oxg_A* 3oxf_A* 3pdn_A* 3oxl_A* 3ru0_A*
Length = 429
Score = 41.8 bits (97), Expect = 5e-06
Identities = 13/52 (25%), Positives = 19/52 (36%), Gaps = 1/52 (1%)
Query: 42 CRPMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPC-QMTGPVCLGCLK 92
++ G A ++ GE++ R PL C G VC CL
Sbjct: 4 PLKVEKFATANRGNGLRAVTPLRPGELLFRSDPLAYTVCKGSRGVVCDRCLL 55
Score = 31.4 bits (70), Expect = 0.030
Identities = 15/46 (32%), Positives = 24/46 (52%)
Query: 8 LCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVL 53
L G+ +CS C++ YC + QK W HK C+ +K C+ +
Sbjct: 54 LLGKEKLMRCSQCRVAKYCSAKCQKKAWPDHKRECKCLKSCKPRYP 99
>3qww_A SET and MYND domain-containing protein 2; methyltransferase,
HSP90, transferase-transferase inhibitor; HET: SFG;
1.80A {Mus musculus} PDB: 3qwv_A* 3s7d_A* 3s7b_A*
3s7f_A* 3s7j_A* 3tg4_A* 3tg5_A* 3rib_A*
Length = 433
Score = 39.9 bits (92), Expect = 3e-05
Identities = 9/50 (18%), Positives = 14/50 (28%), Gaps = 1/50 (2%)
Query: 44 PMKLCEDKVLGRYYIASRSIKAGEVVLREPPLVQGPC-QMTGPVCLGCLK 92
++ GR A R G+++ P G C C
Sbjct: 8 GLERFCSAGKGRGLRALRPFHVGDLLFSCPAYACVLTVGERGHHCECCFA 57
Score = 32.2 bits (72), Expect = 0.016
Identities = 15/50 (30%), Positives = 19/50 (38%), Gaps = 2/50 (4%)
Query: 1 MFDNICGLCGE--TAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLC 48
+ C C KC C+ +YC E QK W HK C M +
Sbjct: 47 ERGHHCECCFARKEGLSKCGRCKQAFYCDVECQKEDWPLHKLECSSMVVL 96
>3smt_A Histone-lysine N-methyltransferase SETD3; histone
methyltransferase, histone modification, LYSI
translational modification, structural genomics; HET:
SAM; 2.04A {Homo sapiens}
Length = 497
Score = 30.2 bits (67), Expect = 0.087
Identities = 10/40 (25%), Positives = 18/40 (45%), Gaps = 1/40 (2%)
Query: 33 IHW-KKHKSHCRPMKLCEDKVLGRYYIASRSIKAGEVVLR 71
+ W ++ + ++ K G A+R IKA E+ L
Sbjct: 82 MKWASENGASVEGFEMVNFKEEGFGLRATRDIKAEELFLW 121
>2yqq_A Zinc finger HIT domain-containing protein 3; structure genomics,
ZF-HIT domain, TRIP-3, structural genomics, NPPSFA; NMR
{Homo sapiens}
Length = 56
Score = 28.1 bits (62), Expect = 0.12
Identities = 13/42 (30%), Positives = 20/42 (47%), Gaps = 5/42 (11%)
Query: 3 DNICGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRP 44
+C +C E K +C C+ + YC ++KHK C P
Sbjct: 12 TVVCVICLEKPKYRCPACR-VPYCSVV----CFRKHKEQCNP 48
>3qxy_A N-lysine methyltransferase SETD6; epigenetics, protein lysine
methyltransferase, transferase, network VIA
methyllysine signaling; HET: SAM; 2.09A {Homo sapiens}
PDB: 3rc0_A*
Length = 449
Score = 27.6 bits (60), Expect = 0.66
Identities = 8/25 (32%), Positives = 14/25 (56%)
Query: 49 EDKVLGRYYIASRSIKAGEVVLREP 73
+ V G +A S++AGE++ P
Sbjct: 45 QGTVAGYGMVARESVQAGELLFVVP 69
>2h21_A Ribulose-1,5 bisphosphate carboxylase/oxygenase; SET domain,
protein lysine methyltransferase, transferase; HET:
SAM; 2.45A {Pisum sativum} SCOP: a.166.1.1 b.85.7.3
PDB: 2h23_A* 2h2e_A* 2h2j_A* 1p0y_A* 1ozv_A* 1mlv_A*
Length = 440
Score = 27.1 bits (59), Expect = 0.81
Identities = 5/18 (27%), Positives = 10/18 (55%)
Query: 54 GRYYIASRSIKAGEVVLR 71
G +A + I +V+L+
Sbjct: 33 GLGLVALKDISRNDVILQ 50
>2d8v_A Zinc finger FYVE domain-containing protein 19; zfyve19, ZF-
B_BOX, structural genomics, NPPSFA; NMR {Mus musculus}
SCOP: g.43.1.1
Length = 67
Score = 25.7 bits (56), Expect = 0.95
Identities = 13/38 (34%), Positives = 18/38 (47%), Gaps = 4/38 (10%)
Query: 6 CGLCGETAKQKCSGCQLIYYCCR----EHQKIHWKKHK 39
C +C E A +C+GC YC R H K+H+
Sbjct: 11 CCICNEDATLRCAGCDGDLYCARCFREGHDNFDLKEHQ 48
>3die_A Thioredoxin, TRX; electron transport, SWAP domain, redox
enzymology, oxidoreductase, redox-active center,
transport; 1.85A {Staphylococcus aureus} PDB: 2o7k_A
2o85_A 2o89_A 2o87_A
Length = 106
Score = 26.1 bits (58), Expect = 1.3
Identities = 9/26 (34%), Positives = 10/26 (38%), Gaps = 6/26 (23%)
Query: 67 EVVLREPPLVQ------GPCQMTGPV 86
V LV GPC+M PV
Sbjct: 15 SKVESGVQLVDFWATACGPCKMIAPV 40
>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC;
1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H
2mcp_H*
Length = 220
Score = 26.3 bits (59), Expect = 1.4
Identities = 8/18 (44%), Positives = 10/18 (55%)
Query: 74 PLVQGPCQMTGPVCLGCL 91
PL P + PV +GCL
Sbjct: 128 PLTLPPALSSDPVIIGCL 145
>3lu0_C DNA-directed RNA polymerase subunit beta; E. coli RNA polymerase,
nucleotidyltransferase, transcription, transferase;
11.20A {Escherichia coli} PDB: 3iyd_C*
Length = 1342
Score = 25.1 bits (55), Expect = 4.3
Identities = 10/27 (37%), Positives = 12/27 (44%)
Query: 63 IKAGEVVLREPPLVQGPCQMTGPVCLG 89
+ GE V R L GP G + LG
Sbjct: 771 VSLGEPVERGDVLADGPSTDLGELALG 797
>3emx_A Thioredoxin; structural genomics, oxidoreductase, PSI-2, protein
structure initiative, NEW YORK SGX research center for
structural genomics; 2.25A {Aeropyrum pernix}
Length = 135
Score = 24.7 bits (54), Expect = 4.5
Identities = 3/26 (11%), Positives = 7/26 (26%), Gaps = 6/26 (23%)
Query: 67 EVVLREPPLVQ------GPCQMTGPV 86
+L+ ++ C P
Sbjct: 27 RQLLQGDAILAVYSKTCPHCHRDWPQ 52
>3gnj_A Thioredoxin domain protein; APC92103, STR genomics, PSI-2,
protein structure initiative, midwest CENT structural
genomics; 1.99A {Desulfitobacterium hafniense dcb-2}
Length = 111
Score = 23.8 bits (52), Expect = 9.7
Identities = 4/9 (44%), Positives = 4/9 (44%)
Query: 78 GPCQMTGPV 86
CQ PV
Sbjct: 35 HVCQKVTPV 43
>2l5l_A Thioredoxin; structural genomics, electron transport, PSI-2,
protein STRU initiative; NMR {Bacteroides vulgatus}
Length = 136
Score = 23.9 bits (52), Expect = 9.7
Identities = 5/9 (55%), Positives = 7/9 (77%)
Query: 78 GPCQMTGPV 86
GPC+M P+
Sbjct: 51 GPCKMVAPI 59
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.327 0.142 0.493
Gapped
Lambda K H
0.267 0.0475 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 1,434,674
Number of extensions: 73842
Number of successful extensions: 473
Number of sequences better than 10.0: 1
Number of HSP's gapped: 471
Number of HSP's successfully gapped: 56
Length of query: 95
Length of database: 6,701,793
Length adjustment: 62
Effective length of query: 33
Effective length of database: 4,970,691
Effective search space: 164032803
Effective search space used: 164032803
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 51 (24.0 bits)