RPS-BLAST 2.2.26 [Sep-21-2011]

Database: scop70_1_75 
           13,730 sequences; 2,407,596 total letters

Searching..................................................done

Query= psy14482
         (95 letters)



>d2dj8a1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
          protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 47

 Score = 45.4 bits (107), Expect = 6e-09
 Identities = 15/37 (40%), Positives = 17/37 (45%)

Query: 6  CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
          C  CG  A + CSGC    YC    Q   W+KH   C
Sbjct: 11 CWNCGRKASETCSGCNTARYCGSFCQHKDWEKHHHIC 47


>d2jw6a1 g.85.1.1 (A:503-540) Zinc finger MYND domain-containing
          protein 2, MTG8 {Human (Homo sapiens) [TaxId: 9606]}
          Length = 38

 Score = 45.0 bits (106), Expect = 9e-09
 Identities = 14/37 (37%), Positives = 19/37 (51%)

Query: 6  CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
          C  CG  A  +C+GC  + YC    Q+  WK H+  C
Sbjct: 2  CVNCGREAMSECTGCHKVNYCSTFCQRKDWKDHQHIC 38


>d2dana1 g.85.1.1 (A:8-54) Zinc finger MYND domain-containing
          protein 10, ZMYND10 {Human (Homo sapiens) [TaxId:
          9606]}
          Length = 47

 Score = 43.5 bits (102), Expect = 3e-08
 Identities = 18/37 (48%), Positives = 22/37 (59%)

Query: 6  CGLCGETAKQKCSGCQLIYYCCREHQKIHWKKHKSHC 42
          C  C   A ++CS CQ  +YCCRE Q  HW+KH   C
Sbjct: 11 CAYCSAEASKRCSRCQNEWYCCRECQVKHWEKHGKTC 47


>d2h2ja2 b.85.7.3 (A:50-310) RuBisCo LSMT catalytic domain {Garden
          pea (Pisum sativum) [TaxId: 3888]}
          Length = 261

 Score = 28.4 bits (62), Expect = 0.097
 Identities = 6/21 (28%), Positives = 11/21 (52%)

Query: 54 GRYYIASRSIKAGEVVLREPP 74
          G   +A + I   +V+L+ P 
Sbjct: 32 GLGLVALKDISRNDVILQVPK 52


>d1iznb_ e.43.1.2 (B:) Capz beta-1 subunit {Chicken (Gallus
          gallus) [TaxId: 9031]}
          Length = 270

 Score = 24.7 bits (54), Expect = 1.7
 Identities = 8/21 (38%), Positives = 14/21 (66%)

Query: 39 KSHCRPMKLCEDKVLGRYYIA 59
           S  +P+K+  DKV+G+ Y+ 
Sbjct: 40 SSVDQPLKIARDKVVGKDYLL 60


>d2d8va1 g.43.1.1 (A:8-61) Zinc finger FYVE domain-containing
          protein 19 {Mouse (Mus musculus) [TaxId: 10090]}
          Length = 54

 Score = 23.7 bits (51), Expect = 1.7
 Identities = 11/29 (37%), Positives = 16/29 (55%)

Query: 6  CGLCGETAKQKCSGCQLIYYCCREHQKIH 34
          C +C E A  +C+GC    YC R  ++ H
Sbjct: 4  CCICNEDATLRCAGCDGDLYCARCFREGH 32


>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo
          sapiens), beta-chain [TaxId: 9606]}
          Length = 114

 Score = 24.4 bits (52), Expect = 2.1
 Identities = 8/48 (16%), Positives = 16/48 (33%)

Query: 10 GETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYY 57
          G+    +C+     +   R +++   +   S          K  GRY 
Sbjct: 15 GKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYT 62


>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
          variable domain, VL-kappa {Mouse (Mus musculus),
          cluster 4 [TaxId: 10090]}
          Length = 107

 Score = 23.9 bits (51), Expect = 2.6
 Identities = 11/48 (22%), Positives = 14/48 (29%)

Query: 10 GETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYY 57
          GE     C   Q I       Q+   K  K+         D V  R+ 
Sbjct: 16 GERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFS 63


>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
          domain, VL-kappa {Mouse (Mus musculus), cluster 4
          [TaxId: 10090]}
          Length = 107

 Score = 23.9 bits (51), Expect = 3.0
 Identities = 6/48 (12%), Positives = 14/48 (29%)

Query: 10 GETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYY 57
          G +    C   Q I      +Q+   +  +   +        +  R+ 
Sbjct: 16 GNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFS 63


>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable
          domain, VL-kappa {Mouse (Mus musculus), cluster 4
          [TaxId: 10090]}
          Length = 109

 Score = 23.9 bits (51), Expect = 3.2
 Identities = 11/49 (22%), Positives = 17/49 (34%)

Query: 10 GETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYI 58
          GET    C   + IY     +Q+   K  +      K   + V  R+  
Sbjct: 16 GETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSG 64


>d2qamc2 b.40.4.5 (C:61-124) N-terminal domain of ribosomal
          protein L2 {Escherichia coli [TaxId: 562]}
          Length = 64

 Score = 22.7 bits (49), Expect = 4.2
 Identities = 6/30 (20%), Positives = 12/30 (40%)

Query: 41 HCRPMKLCEDKVLGRYYIASRSIKAGEVVL 70
                +       RY +A + +KAG+ + 
Sbjct: 27 SANIALVLYKDGERRYILAPKGLKAGDQIQ 56


>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa
          variable domain, VL-kappa {Mouse (Mus musculus),
          cluster 1.2 [TaxId: 10090]}
          Length = 113

 Score = 23.5 bits (50), Expect = 4.5
 Identities = 7/35 (20%), Positives = 10/35 (28%)

Query: 10 GETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRP 44
          GE     C   Q +         + W + K    P
Sbjct: 16 GEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSP 50


>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda
          variable domain, VL-lambda {Human (Homo sapiens),
          cluster 5 [TaxId: 9606]}
          Length = 109

 Score = 23.1 bits (49), Expect = 6.0
 Identities = 7/49 (14%), Positives = 15/49 (30%)

Query: 10 GETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRYYI 58
          G+TA+  C G  +       +Q+   +               +  R+  
Sbjct: 15 GQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSG 63


>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa
          variable domain, VL-kappa {Mouse (Mus musculus),
          cluster 4 [TaxId: 10090]}
          Length = 107

 Score = 23.1 bits (49), Expect = 6.5
 Identities = 7/38 (18%), Positives = 11/38 (28%), Gaps = 6/38 (15%)

Query: 10 GETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKL 47
          G+     C   Q I         ++W + K       L
Sbjct: 16 GDRVTISCRASQDINNF------LNWYQQKPDGTIKLL 47


>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda
          variable domain, VL-lambda {Human (Homo sapiens),
          cluster 5 [TaxId: 9606]}
          Length = 103

 Score = 22.7 bits (48), Expect = 7.3
 Identities = 8/47 (17%), Positives = 15/47 (31%)

Query: 10 GETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRY 56
          G+TA+  CS   L       +Q+   +               +  R+
Sbjct: 13 GQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRF 59


>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa
          variable domain, VL-kappa {Engineered (including hybrid
          species)}
          Length = 107

 Score = 22.4 bits (47), Expect = 9.2
 Identities = 6/47 (12%), Positives = 13/47 (27%)

Query: 10 GETAKQKCSGCQLIYYCCREHQKIHWKKHKSHCRPMKLCEDKVLGRY 56
          G+     C   Q +      +++      +         E  V  R+
Sbjct: 16 GDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRF 62


  Database: scop70_1_75
    Posted date:  Mar 27, 2010  6:21 PM
  Number of letters in database: 2,407,596
  Number of sequences in database:  13,730
  
Lambda     K      H
   0.327    0.142    0.493 

Gapped
Lambda     K      H
   0.267   0.0524    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 375,547
Number of extensions: 16570
Number of successful extensions: 163
Number of sequences better than 10.0: 1
Number of HSP's gapped: 159
Number of HSP's successfully gapped: 71
Length of query: 95
Length of database: 2,407,596
Length adjustment: 58
Effective length of query: 37
Effective length of database: 1,611,256
Effective search space: 59616472
Effective search space used: 59616472
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 47 (22.4 bits)