BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14484
(430 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|3DU4|A Chain A, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
pdb|3DU4|B Chain B, Crystal Structure Of 7-Keto-8-Aminopelargonic Acid Bound
7,8- Diaminopelargonic Acid Synthase In Bacillus
Subtilis
Length = 448
Score = 281 bits (718), Expect = 7e-76, Method: Compositional matrix adjust.
Identities = 149/430 (34%), Positives = 230/430 (53%), Gaps = 10/430 (2%)
Query: 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL 66
K N L+I S + D++GK Y D SS W+N+ GH ++ A+K QL K+
Sbjct: 20 MKDYDENPLIIES---GTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKI 76
Query: 67 EHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNK 126
H L +T+ P +L+E L ++ KL FY GA A+E+ALKM+F YW N G K
Sbjct: 77 AHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEK 136
Query: 127 KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186
+KFI ++N YHG+T+GA++V +I+ F +Y L+ ++Y P G+ +E
Sbjct: 137 QKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDP-DECRDQ 195
Query: 187 AIFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
+ +L LL+++H + E +VQ A GMI+ YL VRE+C Y++ +I DE+A
Sbjct: 196 XLRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT 255
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTT-DXXXXXXXXXXXXXXFLHS 305
G GRTGK FACEH + PD + KGITGGYLP+++ T D F H
Sbjct: 256 GFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHG 315
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA 365
HSY+GN L C AL L +F +NI++++++ KK+ L L P + + RQ G +
Sbjct: 316 HSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCG 375
Query: 366 FDVII--EDPEQIETFSKKFFVAALKNE---LLLRPIGNTVYLMPPYILNKNEIQHMTSA 420
+++ E E + + +LK +L RP+G+ + +PP E+ M +
Sbjct: 376 AELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPPLASTAEELSEMVAI 435
Query: 421 IFQTFNEVIT 430
+ Q +EV +
Sbjct: 436 MKQAIHEVTS 445
>pdb|3DOD|A Chain A, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DOD|B Chain B, Crystal Structure Of Plp Bound 7,8-diaminopelargonic Acid
Synthase In Bacillus Subtilis
pdb|3DRD|A Chain A, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
pdb|3DRD|B Chain B, Crystal Structure Of 7,8 Diaminopelargonic Acid Synthase
Apoenzyme In Bacillus Subtilis
Length = 448
Score = 280 bits (717), Expect = 8e-76, Method: Compositional matrix adjust.
Identities = 149/430 (34%), Positives = 230/430 (53%), Gaps = 10/430 (2%)
Query: 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL 66
K N L+I S + D++GK Y D SS W+N+ GH ++ A+K QL K+
Sbjct: 20 MKDYDENPLIIES---GTGIKVKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKI 76
Query: 67 EHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNK 126
H L +T+ P +L+E L ++ KL FY GA A+E+ALKM+F YW N G K
Sbjct: 77 AHSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEK 136
Query: 127 KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186
+KFI ++N YHG+T+GA++V +I+ F +Y L+ ++Y P G+ +C
Sbjct: 137 QKFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQC 196
Query: 187 AIFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
+ +L LL+++H + E +VQ A GMI+ YL VRE+C Y++ +I DE+A
Sbjct: 197 -LRELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVAT 255
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTT-DXXXXXXXXXXXXXXFLHS 305
G GRTGK FACEH + PD + KGITGGYLP+++ T D F H
Sbjct: 256 GFGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHG 315
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA 365
HSY+GN L C AL L +F +NI++++++ KK+ L L P + + RQ G +
Sbjct: 316 HSYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCG 375
Query: 366 FDVII--EDPEQIETFSKKFFVAALKNE---LLLRPIGNTVYLMPPYILNKNEIQHMTSA 420
+++ E E + + +LK +L RP+G+ + +PP E+ M +
Sbjct: 376 AELVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPPLASTAEELSEMVAI 435
Query: 421 IFQTFNEVIT 430
+ Q +EV +
Sbjct: 436 MKQAIHEVTS 445
>pdb|1QJ3|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ3|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With 7-Keto-8-Aminopelargonic Acid
pdb|1QJ5|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1QJ5|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
pdb|1MLY|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLY|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Cis Isomer Of Amiclenomycin
pdb|1MLZ|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin.
pdb|1MLZ|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
In Complex With The Trans-Isomer Of Amiclenomycin
Length = 429
Score = 247 bits (630), Expect = 9e-66, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 216/397 (54%), Gaps = 17/397 (4%)
Query: 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86
LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKL 95
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
++T L F G+ AVEVA+KM+ YW KG +++F+ +N YHG+T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGDTFGAMSV 154
Query: 147 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 205
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 206 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD 268
Query: 266 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 325
LCL K +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGKALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 326 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 384
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIG----VVETTHPVNMAALQKFF 383
Query: 385 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
V + + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|1DTY|A Chain A, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor.
pdb|1DTY|B Chain B, Crystal Structure Of
Adenosylmethionine-8-Amino-7-Oxonanoate Aminotransferase
With Pyridoxal Phosphate Cofactor
Length = 429
Score = 246 bits (629), Expect = 1e-65, Method: Compositional matrix adjust.
Identities = 140/397 (35%), Positives = 215/397 (54%), Gaps = 17/397 (4%)
Query: 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86
LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGEITHAPAIELCRKL 95
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
++T L F G+ AVEVA+KM+ YW KG + +F+ +N YHG+T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWDAKG-EARDRFLTFRNGYHGDTFGAMSV 154
Query: 147 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 205
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 206 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD 268
Query: 266 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 325
LCL K +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGKALTGGTMTLSATLTT-REVAETISDGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 326 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 384
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAI----GVVETTHPVNMAALQKFF 383
Query: 385 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
V + + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|1S0A|A Chain A, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S0A|B Chain B, Crystal Structure Of The Y17f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 245 bits (626), Expect = 3e-65, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 215/397 (54%), Gaps = 17/397 (4%)
Query: 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86
LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKL 95
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
++T L F G+ AVEVA+KM+ YW KG +++F+ +N YHG+T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGDTFGAMSV 154
Query: 147 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 205
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 206 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD 268
Query: 266 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 325
LCL +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGXALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 326 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 384
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIG----VVETTHPVNMAALQKFF 383
Query: 385 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
V + + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|1S07|A Chain A, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1S07|B Chain B, Crystal Structure Of The R253a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 244 bits (624), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 141/422 (33%), Positives = 226/422 (53%), Gaps = 17/422 (4%)
Query: 2 NNIVYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKN 61
+I++ ++ L + + ++ LI G+R +D +SSWW + G+++ +N A+K+
Sbjct: 11 RHILHPYTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKS 70
Query: 62 QLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK 121
Q++ + HVM +TH P I+L KL ++T L F G+ AVEVA+KM+ YW K
Sbjct: 71 QIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAK 130
Query: 122 GFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSA 180
G +++F+ +N YHG+T GA++V + S ++ L + P SR + +
Sbjct: 131 G-EARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDER 189
Query: 181 NEIARCAIFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLI 240
+ + L+ + ++ EP+VQ AGGM MY +LK +R+IC+ I LI
Sbjct: 190 DMVG------FARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLI 243
Query: 241 ADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXX 300
ADEIA G G TGK FACEHAEI PD LCL K +TGG + LS +TT
Sbjct: 244 ADEIATGFGATGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTT-REVAETISNGEAG 302
Query: 301 XFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQK 360
F+H ++ GNPLAC AA A+L I + Q+++ ++ + L + + R
Sbjct: 303 CFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVL 362
Query: 361 GMIWAFDVIIEDPEQIETFS-KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS 419
G I ++E + + +KFFV + + +RP G +YLMPPYI+ ++Q +T+
Sbjct: 363 GAIG----VVETTHPVNMAALQKFFV---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTA 415
Query: 420 AI 421
A+
Sbjct: 416 AV 417
>pdb|1MGV|A Chain A, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
pdb|1MGV|B Chain B, Crystal Structure Of The R391a Mutant Of
7,8-Diaminopelargonic Acid Synthase
Length = 429
Score = 244 bits (624), Expect = 6e-65, Method: Compositional matrix adjust.
Identities = 141/422 (33%), Positives = 226/422 (53%), Gaps = 17/422 (4%)
Query: 2 NNIVYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKN 61
+I++ ++ L + + ++ LI G+R +D +SSWW + G+++ +N A+K+
Sbjct: 11 RHILHPYTSMTSPLPVYPVVSAEGCELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKS 70
Query: 62 QLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK 121
Q++ + HVM +TH P I+L KL ++T L F G+ AVEVA+KM+ YW K
Sbjct: 71 QIDAMSHVMFGGITHAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAK 130
Query: 122 GFLNKKKFICLQNSYHGETLGALAVTNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSA 180
G +++F+ +N YHG+T GA++V + S ++ L + P SR + +
Sbjct: 131 G-EARQRFLTFRNGYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDER 189
Query: 181 NEIARCAIFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLI 240
+ + L+ + ++ EP+VQ AGGM MY +LK +R+IC+ I LI
Sbjct: 190 DMVG------FARLMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLI 243
Query: 241 ADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXX 300
ADEIA G GRTGK FACEHAEI PD LCL K +TGG + LS +TT
Sbjct: 244 ADEIATGFGRTGKLFACEHAEIAPDILCLGKALTGGTMTLSATLTT-REVAETISNGEAG 302
Query: 301 XFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQK 360
F+H ++ GNPLAC AA A+L I + Q+++ ++ + L + + R
Sbjct: 303 CFMHGPTFMGNPLACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVL 362
Query: 361 GMIWAFDVIIEDPEQIETFS-KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS 419
G I ++E + + +KFFV + + + P G +YLMPPYI+ ++Q +T+
Sbjct: 363 GAIG----VVETTHPVNMAALQKFFV---EQGVWIAPFGKLIYLMPPYIILPQQLQRLTA 415
Query: 420 AI 421
A+
Sbjct: 416 AV 417
>pdb|1S08|A Chain A, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S08|B Chain B, Crystal Structure Of The D147n Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 244 bits (622), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 139/397 (35%), Positives = 214/397 (53%), Gaps = 17/397 (4%)
Query: 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86
LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKL 95
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
++T L F G+ AVEVA+KM+ YW KG +++F+ +N YHG T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGNTFGAMSV 154
Query: 147 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 205
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 206 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD 268
Query: 266 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 325
LCL +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGXALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 326 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 384
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIG----VVETTHPVNMAALQKFF 383
Query: 385 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
V + + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|1S09|A Chain A, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S09|B Chain B, Crystal Structure Of The Y144f Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 244 bits (622), Expect = 8e-65, Method: Compositional matrix adjust.
Identities = 138/397 (34%), Positives = 215/397 (54%), Gaps = 17/397 (4%)
Query: 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86
LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKL 95
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
++T L F G+ AVEVA+KM+ YW KG +++F+ +N +HG+T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGFHGDTFGAMSV 154
Query: 147 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 205
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 206 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPD 268
Query: 266 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 325
LCL +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGXALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 326 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 384
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIG----VVETTHPVNMAALQKFF 383
Query: 385 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
V + + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|1S06|A Chain A, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
pdb|1S06|B Chain B, Crystal Structure Of The R253k Mutant Of 7,8-
Diaminopelargonic Acid Synthase
Length = 429
Score = 243 bits (621), Expect = 1e-64, Method: Compositional matrix adjust.
Identities = 138/397 (34%), Positives = 215/397 (54%), Gaps = 17/397 (4%)
Query: 27 SLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86
LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 36 ELILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKL 95
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
++T L F G+ AVEVA+KM+ YW KG +++F+ +N YHG+T GA++V
Sbjct: 96 VAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRNGYHGDTFGAMSV 154
Query: 147 TNIQ-SFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXX 205
+ S ++ L + P SR + + + + L+ + ++
Sbjct: 155 CDPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVG------FARLMAAHRHEIAAV 208
Query: 206 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265
EP+VQ AGGM MY +LK +R+IC+ I LIADEIA G G+TGK FACEHAEI PD
Sbjct: 209 IIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGKTGKLFACEHAEIAPD 268
Query: 266 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 325
LCL +TGG + LS +TT F+H ++ GNPLAC AA A+L I
Sbjct: 269 ILCLGXALTGGTMTLSATLTT-REVAETISNGEAGCFMHGPTFMGNPLACAAANASLAIL 327
Query: 326 NKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFS-KKFF 384
+ Q+++ ++ + L + + R G I ++E + + +KFF
Sbjct: 328 ESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIG----VVETTHPVNMAALQKFF 383
Query: 385 VAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
V + + +RP G +YLMPPYI+ ++Q +T+A+
Sbjct: 384 V---EQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAV 417
>pdb|3TFT|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFT|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Pre-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|A Chain A, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
pdb|3TFU|B Chain B, Crystal Structure Of 7,8-Diaminopelargonic Acid Synthase
(Bioa) From Mycobacterium Tuberculosis, Post-Reaction
Complex With A 3,6- Dihydropyrid-2-One Heterocycle
Inhibitor
Length = 457
Score = 234 bits (596), Expect = 9e-62, Method: Compositional matrix adjust.
Identities = 128/404 (31%), Positives = 201/404 (49%), Gaps = 20/404 (4%)
Query: 22 NSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIK 81
+W + D LDA+SSWW + GH + +++AL QL + HVM LTH+P +
Sbjct: 63 GAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAAR 122
Query: 82 LSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETL 141
L++ L +T L F+ G+ +VEVA KM+ YW +G K++ + + YHG+T
Sbjct: 123 LAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTF 182
Query: 142 GALAVTNIQ-SFKEIYTSLL-NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199
A+++ + ++T +L + + P R+ + SA E L ++
Sbjct: 183 LAMSICDPHGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAA---------FEAQLAQHA 231
Query: 200 NKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 259
+ EP+VQ AGGM +D YL +R+IC Y + LI DEIA G GRTG FA +H
Sbjct: 232 GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADH 291
Query: 260 AEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAAL 319
A + PD +C+ K +TGGYL L+ + T +H ++ NPLAC ++
Sbjct: 292 AGVSPDIMCVGKALTGGYLSLAATLCT-ADVAHTISAGAAGALMHGPTFMANPLACAVSV 350
Query: 320 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 379
A++E+ + RI++ +T L + P + + R G I + + P +
Sbjct: 351 ASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIEC--DRPVDLAVA 408
Query: 380 SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 423
+ AAL + LRP N VY MPPYI EI +TSA+ +
Sbjct: 409 TP----AALDRGVWLRPFRNLVYAMPPYICTPAEITQITSAMVE 448
>pdb|3BV0|A Chain A, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
pdb|3BV0|B Chain B, Crystal Structure Of Plp Bound 7,8-Diaminopelargonic Acid
Synthase In Mycobacterium Tuberculosis
Length = 437
Score = 231 bits (589), Expect = 5e-61, Method: Compositional matrix adjust.
Identities = 127/404 (31%), Positives = 200/404 (49%), Gaps = 20/404 (4%)
Query: 22 NSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIK 81
+W + D LDA+SSWW + GH + +++AL QL + HVM LTH+P +
Sbjct: 43 GAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAAR 102
Query: 82 LSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETL 141
L++ L +T L F+ G+ +VEVA KM+ YW +G K++ + + YHG+T
Sbjct: 103 LAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTF 162
Query: 142 GALAVTNIQ-SFKEIYTSLL-NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199
A+++ + ++T +L + + P R+ + SA E L ++
Sbjct: 163 LAMSICDPHGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAA---------FEAQLAQHA 211
Query: 200 NKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 259
+ EP+VQ AGGM +D YL +R+IC Y + LI DEIA G GRTG FA +H
Sbjct: 212 GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADH 271
Query: 260 AEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAAL 319
A + PD +C+ K +TGGYL L+ + T + ++ NPLAC ++
Sbjct: 272 AGVSPDIMCVGKALTGGYLSLAATLCT-ADVAHTISAGAAGALMRGPTFMANPLACAVSV 330
Query: 320 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 379
A++E+ + RI++ +T L + P + + R G I + + P +
Sbjct: 331 ASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIEC--DRPVDLAVA 388
Query: 380 SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 423
+ AAL + LRP N VY MPPYI EI +TSA+ +
Sbjct: 389 TP----AALDRGVWLRPFRNLVYAMPPYICTPAEITQITSAMVE 428
>pdb|3LV2|A Chain A, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
pdb|3LV2|B Chain B, Crystal Structure Of Mycobacterium Tuberculosis
7,8-Diaminopelargonic Acid Synthase In Complex With
Substrate Analog Sinefungin
Length = 462
Score = 231 bits (588), Expect = 8e-61, Method: Compositional matrix adjust.
Identities = 127/404 (31%), Positives = 200/404 (49%), Gaps = 20/404 (4%)
Query: 22 NSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIK 81
+W + D LDA+SSWW + GH + +++AL QL + HVM LTH+P +
Sbjct: 68 GAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMNHVMFGGLTHEPAAR 127
Query: 82 LSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETL 141
L++ L +T L F+ G+ +VEVA KM+ YW +G K++ + + YHG+T
Sbjct: 128 LAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKRRLMTWRGGYHGDTF 187
Query: 142 GALAVTNIQ-SFKEIYTSLL-NKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199
A+++ + ++T +L + + P R+ + SA E L ++
Sbjct: 188 LAMSICDPHGGMHSLWTDVLAAQVFAPQVP--RDYDPAYSAA---------FEAQLAQHA 236
Query: 200 NKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 259
+ EP+VQ AGGM +D YL +R+IC Y + LI DEIA G GRTG FA +H
Sbjct: 237 GELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIATGFGRTGALFAADH 296
Query: 260 AEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAAL 319
A + PD +C+ K +TGGYL L+ + T + ++ NPLAC ++
Sbjct: 297 AGVSPDIMCVGKALTGGYLSLAATLCT-ADVAHTISAGAAGALMRGPTFMANPLACAVSV 355
Query: 320 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF 379
A++E+ + RI++ +T L + P + + R G I + + P +
Sbjct: 356 ASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVIEC--DRPVDLAVA 413
Query: 380 SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQ 423
+ AAL + LRP N VY MPPYI EI +TSA+ +
Sbjct: 414 TP----AALDRGVWLRPFRNLVYAMPPYICTPAEITQITSAMVE 453
>pdb|3HMU|A Chain A, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
pdb|3HMU|B Chain B, Crystal Structure Of A Class Iii Aminotransferase From
Silicibacter Pomeroyi
Length = 472
Score = 166 bits (421), Expect = 2e-41, Method: Compositional matrix adjust.
Identities = 111/422 (26%), Positives = 189/422 (44%), Gaps = 18/422 (4%)
Query: 16 VIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNL 74
VI + W L D G+ LDA++ W G+ + + Q+ +L +
Sbjct: 40 VITRARGVW---LNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYYNTFFKT 96
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
TH P I L++KL+ L L H F+ G+ A + ++M YW NKG K I +N
Sbjct: 97 THVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTVIISRKN 156
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-I 193
+YHG T+ + A+ + + L+ + I P+ E +LE
Sbjct: 157 AYHGSTVASSALGGMAGMH-AQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARARELEEA 215
Query: 194 LLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
+L+ N+ EP VQ AGG+I+ Y ++ IC+ Y+I LIADE+ G GRTG
Sbjct: 216 ILELGENRVAAFIAEP-VQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICGFGRTGN 274
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPL 313
+F + I P + ++KG++ GY P+ + D F H ++YSG+P+
Sbjct: 275 WFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCD----EVAHVIGKDEFNHGYTYSGHPV 330
Query: 314 ACCAALATLEIFNKDNILQRISQDMKK-ITKALTSLITHPKIINFRQKGMIWAFDVIIED 372
A AL L I ++NIL + + + +L HP + + GM+ + +
Sbjct: 331 AAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASIALTPNK 390
Query: 373 PEQIETFSKKFFVA------ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426
+ + S+ + N L++R +G+ + + PP ++ EI M I ++ +
Sbjct: 391 ASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVITPAEIDEMFVRIRKSLD 450
Query: 427 EV 428
E
Sbjct: 451 EA 452
>pdb|3I5T|A Chain A, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
pdb|3I5T|B Chain B, Crystal Structure Of Aminotransferase Prk07036 From
Rhodobacter Sphaeroides Kd131
Length = 476
Score = 158 bits (399), Expect = 6e-39, Method: Compositional matrix adjust.
Identities = 104/411 (25%), Positives = 189/411 (45%), Gaps = 24/411 (5%)
Query: 33 GKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQY 92
G+R +D + W G+ I A+ +Q L + + P +L+EK+++LT
Sbjct: 53 GRRLIDGPAGMWCAQVGYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKIATLTPG 112
Query: 93 KLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSF 152
L F+ + G++AV+ AL+ S Y G KK+ I + YHG T A T
Sbjct: 113 DLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAACTGRTGN 172
Query: 153 KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXX------ 206
+ ++ +++P+ R + GN + E L+ L+++ ++
Sbjct: 173 WPNFDIAQDRISFLSSPNPR--HAGNRSQEAF------LDDLVQEFEDRIESLGPDTIAA 224
Query: 207 --XEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EIW 263
EP++ +GG+I+ + Y + IC ++I I+DE+ G GR G++FA E +
Sbjct: 225 FLAEPIL-ASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVV 283
Query: 264 PDFLCLSKGITGGYLPL-SLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATL 322
PD + +KG+T GY+PL L ++ F + ++YS P+AC AALA +
Sbjct: 284 PDIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANI 343
Query: 323 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKK 382
E+ ++ I+ + + AL SL P + R G++ +++ T K
Sbjct: 344 ELMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQCLLDPTRADGTAEDK 403
Query: 383 FFVAALKNE-----LLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
F + L++RP+G+ + PP I+++ +I M + + Q EV
Sbjct: 404 AFTLKIDERCFELGLIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITEV 454
>pdb|4A6R|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6R|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Polyacrylic Acid
pdb|4A6T|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6T|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In Complex With Plp
pdb|4A6U|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A6U|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In The Apo Form, Crystallised
From Peg 3350
pdb|4A72|A Chain A, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|B Chain B, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|C Chain C, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4A72|D Chain D, Crystal Structure Of The Omega Transaminase From
Chromobacterium Violaceum In A Mixture Of Apo And
Plp-Bound States
pdb|4AH3|A Chain A, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|B Chain B, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|C Chain C, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
pdb|4AH3|D Chain D, Crystal Structure Of The Holo Omega-Transaminase From
Chromobacterium Violaceum
Length = 459
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 108/414 (26%), Positives = 183/414 (44%), Gaps = 23/414 (5%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-HVMLSNLTHKPVIKLSEKL 86
L D G + +D ++ W G+ +A + Q+ +L + TH V++LS L
Sbjct: 44 LWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLL 103
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+ +T FY + G+ +V+ ++M YW +G KK I N YHG T+G ++
Sbjct: 104 AEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASL 163
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKXXXX 205
++ E + I P K + +E A LE +L+ +K
Sbjct: 164 GGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAF 223
Query: 206 XXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265
EP +Q AGG+I+ + Y + IC Y++ L+ADE+ G GRTG++F +H PD
Sbjct: 224 VGEP-IQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPD 282
Query: 266 FLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIF 325
+KG++ GYLP+ V F H +YSG+P+ A A +
Sbjct: 283 LFTAAKGLSSGYLPIGAVFVG---KRVAEGLIAGGDFNHGFTYSGHPVCAAVAHANVAAL 339
Query: 326 NKDNILQRISQD----MKKITKALTSLITHPKIINFRQKGMIWAFDVI--------IEDP 373
+ I+QR+ D M+K + S H + + R GM+ AF ++ D
Sbjct: 340 RDEGIVQRVKDDIGPYMQKRWRETFSRFEH--VDDVRGVGMVQAFTLVKNKAKRELFPDF 397
Query: 374 EQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
+I T + F +N L++R G+ + PP ++ + E+ M + + E
Sbjct: 398 GEIGTLCRDIF---FRNNLIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLEE 448
>pdb|4GRX|A Chain A, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|B Chain B, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|C Chain C, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
pdb|4GRX|D Chain D, Structure Of An Omega-Aminotransferase From Paracoccus
Denitrificans
Length = 465
Score = 156 bits (394), Expect = 2e-38, Method: Compositional matrix adjust.
Identities = 101/413 (24%), Positives = 193/413 (46%), Gaps = 13/413 (3%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEK 85
++DV G+RYLDA S W + G + + +A K Q ++ H ++ + V+ LSEK
Sbjct: 53 IVDVHGRRYLDANSGLWNMVAGFDHKGLIEAAKAQYDRFPGYHAFFGRMSDQTVM-LSEK 111
Query: 86 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 145
L ++ + G FY + G+ A + +KM + +G K+K + N+YHG T + +
Sbjct: 112 LVEVSPFDNGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSAS 171
Query: 146 VTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNS-ANEIARCAIFDLEILLKKNHNKXX 203
+T + + ++ L +T P R +G + A +AR A + + ++ +
Sbjct: 172 MTG-KPYNSVFGLPLPGFIHLTCPHYWRYGEEGETEAQFVARLARELEDTITREGADTIA 230
Query: 204 XXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 263
EP V AGG+I Y + + I Y+I +I+DE+ G GRTG + C +
Sbjct: 231 GFFAEP-VMGAGGVIPPAKGYFQAILPILRKYDIPMISDEVICGFGRTGNTWGCLTYDFM 289
Query: 264 PDFLCLSKGITGGYLPL-SLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATL 322
PD + S +T G+ P+ ++++ D F H + SG+P+ C AL +
Sbjct: 290 PDAIISSXNLTAGFFPMGAVILGPDLAKRVEAAVEAIEEFPHGFTASGHPVGCAIALKAI 349
Query: 323 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE----- 377
++ + + + + + + L + P I +R G +WA + + + P +
Sbjct: 350 DVVMNEGLAENVRRLAPRFEAGLKRIADRPNIGEYRGIGFMWALEAVKDKPTKTPFDANL 409
Query: 378 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430
+ S++ L+ RP+G ++ L PP+IL + ++ M + + ++V
Sbjct: 410 SVSERIANTCTDLGLICRPLGQSIVLCPPFILTEAQMDEMFEKLEKALDKVFA 462
>pdb|3N5M|A Chain A, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|B Chain B, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|C Chain C, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
pdb|3N5M|D Chain D, Crystals Structure Of A Bacillus Anthracis
Aminotransferase
Length = 452
Score = 154 bits (388), Expect = 1e-37, Method: Compositional matrix adjust.
Identities = 119/407 (29%), Positives = 182/407 (44%), Gaps = 35/407 (8%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89
D+ GKRYLD S W G+ + +A QL L + S +H+P IKL+EKL+
Sbjct: 45 DIQGKRYLDGXSGLWCVNSGYGRKELAEAAYKQLQTLSYFPXSQ-SHEPAIKLAEKLNEW 103
Query: 90 --TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
+Y + F+ + G+ A E A K++ Y+ KG ++ KF YHG T A T
Sbjct: 104 LGGEYVI---FFSNSGSEANETAFKIARQYYAQKGEPHRYKFXSRYRGYHGNTXATXAAT 160
Query: 148 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH-------N 200
+ Y + +T PD I R I+D+E + + +
Sbjct: 161 GQAQRRYQYEPFASGFLHVTPPDCYRXPG------IERENIYDVECVKEVDRVXTWELSE 214
Query: 201 KXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA 260
EP++ GG++ Y K V E C + LI+DE+ G GRTGK F +
Sbjct: 215 TIAAFIXEPII-TGGGILXAPQDYXKAVHETCQKHGALLISDEVICGFGRTGKAFGFXNY 273
Query: 261 EIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALA 320
++ PD + +KGIT YLPLS F H +++ GNP AC AL
Sbjct: 274 DVKPDIITXAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNPAACALALK 333
Query: 321 TLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVI--IEDPEQIE 377
LEI +N+++R +Q + + L I HP + + R KG++ +++ E E I+
Sbjct: 334 NLEIIENENLIERSAQXGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIELVNDKETKEPID 393
Query: 378 TFSKKFFVAALKNELLLRPIG----------NTVYLMPPYILNKNEI 414
V A K + L+ IG N + L PP +++ EI
Sbjct: 394 NDKIASVVNACKEKGLI--IGRNGXTTAGYNNILTLAPPLVISSEEI 438
>pdb|3NUI|A Chain A, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
pdb|3NUI|B Chain B, Crystal Structure Of Omega-Transferase From Vibrio
Fluvialis Js17
Length = 478
Score = 153 bits (386), Expect = 2e-37, Method: Compositional matrix adjust.
Identities = 101/413 (24%), Positives = 193/413 (46%), Gaps = 13/413 (3%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEK 85
++DV+G+RYLDA S W + G + + A K Q + H ++ + V+ LSEK
Sbjct: 55 IVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGYHAFFGRMSDQTVM-LSEK 113
Query: 86 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 145
L ++ + G FY + G+ A + +KM + +G K+K + N+YHG T + +
Sbjct: 114 LVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGVTAVSAS 173
Query: 146 VTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANE-IARCAIFDLEILLKKNHNKXX 203
+T + + ++ L +T P R +G + + +AR A E + ++ +
Sbjct: 174 MTG-KPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIA 232
Query: 204 XXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 263
EP V AGG+I Y + + I Y+I +I+DE+ G GRTG + C +
Sbjct: 233 GFFAEP-VMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFT 291
Query: 264 PDFLCLSKGITGGYLPL-SLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATL 322
PD + SK +T G+ P+ ++++ + F H + SG+P+ C AL +
Sbjct: 292 PDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAI 351
Query: 323 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE----- 377
++ + + + + + + + L + P I +R G +WA + + + +
Sbjct: 352 DVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNL 411
Query: 378 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430
+ S++ L+ RP+G +V L PP+IL + ++ M + + ++V
Sbjct: 412 SVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKVFA 464
>pdb|3A8U|X Chain X, Crystal Structure Of Omega-Amino Acid:pyruvate
Aminotransferase
Length = 449
Score = 152 bits (384), Expect = 4e-37, Method: Compositional matrix adjust.
Identities = 110/427 (25%), Positives = 196/427 (45%), Gaps = 26/427 (6%)
Query: 16 VIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT 75
+I + + SW L+D G++ D++S W GH+ I +A+ QL+ L++
Sbjct: 35 LIVAAEGSW---LVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPGFQYG 91
Query: 76 HKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNS 135
H +L+EK++ LT L H F+ G+ A+KM YW KG K K I
Sbjct: 92 HPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIGRARG 151
Query: 136 YHGETLGALAVTNIQSFKEIYTSLLNK------TYIITTPDSRNINKGNS---ANEIARC 186
YHG + ++ + ++++ + T + + SR + K A+E+
Sbjct: 152 YHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADEL--- 208
Query: 187 AIFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
L+++ + + EPL AG ++ + YLK REICN +NI L+ DE+
Sbjct: 209 ----LKLIELHDASNIAAVFVEPLAGSAGVLVPPEG-YLKRNREICNQHNILLVFDEVIT 263
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXX---XXXXXXXXXFL 303
G GRTG F + + PD +C++K +T G +P+ V+ + F
Sbjct: 264 GFGRTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFP 323
Query: 304 HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMI 363
H ++YS +P+AC A LA L + K+N++Q +++ KAL + +I+ R G+
Sbjct: 324 HGYTYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLA 383
Query: 364 WAFDVIIEDPEQI-ETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIF 422
A + D + I F +A K +R G+T+ P + ++ + A+
Sbjct: 384 GAIQIAPRDGDAIVRPFEAG--MALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVG 441
Query: 423 QTFNEVI 429
+ N+++
Sbjct: 442 EVLNKLL 448
>pdb|4E3Q|A Chain A, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|B Chain B, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|C Chain C, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
pdb|4E3Q|D Chain D, Pmp-Bound Form Of Aminotransferase Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 145 bits (365), Expect = 5e-35, Method: Compositional matrix adjust.
Identities = 101/415 (24%), Positives = 187/415 (45%), Gaps = 17/415 (4%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEK 85
++DV+G+RYLDA S W + G + + A K Q + H + + + LSEK
Sbjct: 61 IVDVNGRRYLDANSGLWNXVAGFDHKGLIDAAKAQYERFPGYHAFFGRXSDQ-TVXLSEK 119
Query: 86 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 145
L ++ + G FY + G+ A + +K + +G K+K + N+YHG T + +
Sbjct: 120 LVEVSPFDSGRVFYTNSGSEANDTXVKXLWFLHAAEGKPQKRKILTRWNAYHGVTAVSAS 179
Query: 146 VTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANE-IARCAIFDLEILLKKNHNKXX 203
T + + ++ L +T P R +G + + +AR A E + ++ +
Sbjct: 180 XTG-KPYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIA 238
Query: 204 XXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 263
EP V AGG+I Y + + I Y+I +I+DE+ G GRTG + C +
Sbjct: 239 GFFAEP-VXGAGGVIPPAKGYFQAILPILRKYDIPVISDEVICGFGRTGNTWGCVTYDFT 297
Query: 264 PDFLCLSKGITGGYLPL-SLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATL 322
PD + SK +T G+ P ++++ + F H + SG+P+ C AL +
Sbjct: 298 PDAIISSKNLTAGFFPXGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAI 357
Query: 323 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE----- 377
++ + + + + + + + L + P I +R G WA + + + +
Sbjct: 358 DVVXNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFXWALEAVKDKASKTPFDGNL 417
Query: 378 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQH----MTSAIFQTFNEV 428
+ S++ L+ RP+G +V L PP+IL + + + A+ + F EV
Sbjct: 418 SVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQXDEXFDKLEKALDKVFAEV 472
>pdb|4E3R|A Chain A, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|B Chain B, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|C Chain C, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
pdb|4E3R|D Chain D, Plp-Bound Aminotransferase Mutant Crystal Structure From
Vibrio Fluvialis
Length = 473
Score = 144 bits (362), Expect = 1e-34, Method: Compositional matrix adjust.
Identities = 98/413 (23%), Positives = 190/413 (46%), Gaps = 13/413 (3%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEK 85
++DV+G+RYLDA S + + G + + A K Q + H ++ + V+ LSEK
Sbjct: 61 IVDVNGRRYLDANSGLFNMVAGFDHKGLIDAAKAQYERFPGYHAAFGKMSDQTVM-LSEK 119
Query: 86 LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 145
L ++ + G FY + G+ A + +KM + +G K+K + N+YHG T + +
Sbjct: 120 LVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRKILTRWNAYHGATAVSAS 179
Query: 146 VTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANE-IARCAIFDLEILLKKNHNKXX 203
+T + ++ L +T P R +G + + +AR A E + ++ +
Sbjct: 180 MTGF-PYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARLARELEETIQREGADTIA 238
Query: 204 XXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 263
EP V AGG+I Y + + I Y+I +I+DE+ G GRTG + C +
Sbjct: 239 GFFAEP-VMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVVCGFGRTGNTWGCVTYDFT 297
Query: 264 PDFLCLSKGITGGYLPL-SLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATL 322
PD + S +T G+ P+ ++++ + F H + SG+P+ C AL +
Sbjct: 298 PDAIISSXNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHGFTASGHPVGCAIALKAI 357
Query: 323 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIE----- 377
++ + + + + + + + L + P I +R G +WA + + + +
Sbjct: 358 DVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWALEAVKDKASKTPFDGNL 417
Query: 378 TFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430
+ S++ L+ P+G +V L PP+IL + ++ M + + ++V
Sbjct: 418 SVSERIANTCTDLGLICFPLGQSVVLCPPFILTEAQMDEMFDKLEKALDKVFA 470
>pdb|2EH6|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
pdb|2EH6|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase From
Aquifex Aeolicus Vf5
Length = 375
Score = 142 bits (358), Expect = 4e-34, Method: Compositional matrix adjust.
Identities = 109/396 (27%), Positives = 180/396 (45%), Gaps = 48/396 (12%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP-VIKLSEKL 86
L D GK YLD +S VN GH+ + +ALK Q+ KL HV SNL P +L+ KL
Sbjct: 22 LYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHV--SNLYENPWQEELAHKL 79
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+ G F+ + G +VE A+K++ YW +KG NK KFI +NS+HG T G+L+
Sbjct: 80 VKHF-WTEGKVFFANSGTESVEAAIKLARKYWRDKG-KNKWKFISFENSFHGRTYGSLSA 137
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXX 206
T F + + L+ + + D++ + K +
Sbjct: 138 TGQPKFHKGFEPLVPG--------------------FSYAKLNDIDSVYKLLDEETAGII 177
Query: 207 XEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
E ++Q GG+ +L ++EIC ++ LI DE+ G GRTG+F+A +H + PD
Sbjct: 178 IE-VIQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDV 236
Query: 267 LCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFN 326
+ L+KG+ GG +P+ ++ + H ++ GNPLAC A ++
Sbjct: 237 IALAKGLGGG-VPIGAILAREEVAQSFTPGS------HGSTFGGNPLACRAGTVVVDEVE 289
Query: 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 386
K +L + + + L L + +G++ ++E K + +
Sbjct: 290 K--LLPHVREVGNYFKEKLKELGKG----KVKGRGLMLGL--------ELERECKDYVLK 335
Query: 387 ALKNELLLR-PIGNTVYLMPPYILNKNEIQHMTSAI 421
AL+ LL+ G + +PP I+ K I S +
Sbjct: 336 ALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVL 371
>pdb|3NX3|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
pdb|3NX3|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase
(Argd) From Campylobacter Jejuni
Length = 395
Score = 139 bits (349), Expect = 4e-33, Method: Compositional matrix adjust.
Identities = 112/395 (28%), Positives = 184/395 (46%), Gaps = 37/395 (9%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
L D K+YLD S V G++++ N +K Q++KL H SNL + I + +
Sbjct: 30 LFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHT--SNLYYNENIAAA-AKN 86
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
L F+ + G ++E A K + Y +NKG + +FI ++S+HG TLGAL++T
Sbjct: 87 LAKASALERVFFTNSGTESIEGAXKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGALSLT 145
Query: 148 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXX 207
+ +++ + L++ D ++ K NE CAI LE
Sbjct: 146 ANEKYQKPFKPLISGVKFAKYNDISSVEK--LVNE-KTCAII-LES-------------- 187
Query: 208 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 267
VQ GG+ + + K +R++C+ +I LIADEI G GR+GKFFA EHA+I PD
Sbjct: 188 ---VQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGXGRSGKFFAYEHAQILPDIX 244
Query: 268 CLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNK 327
+K + G + V+ H +Y GNPL C A EIF +
Sbjct: 245 TSAKALGCGLSVGAFVINQKVASNSLEAGD------HGSTYGGNPLVCAGVNAVFEIFKE 298
Query: 328 DNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAA 387
+ IL+ +++ + ++L LI ++KG+ + + ++ ++ +K
Sbjct: 299 EKILENVNKLTPYLEQSLDELINEFDFCK-KRKGLGFXQGLSLDKSVKVAKVIQK----C 353
Query: 388 LKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 421
+N LLL G N + +PP IL K I + +
Sbjct: 354 QENALLLISCGENDLRFLPPLILQKEHIDEXSEKL 388
>pdb|3I4J|A Chain A, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|B Chain B, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|C Chain C, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
pdb|3I4J|D Chain D, Crystal Structure Of Aminotransferase, Class Iii From
Deinococcus Radiodurans
Length = 430
Score = 135 bits (341), Expect = 3e-32, Method: Compositional matrix adjust.
Identities = 95/400 (23%), Positives = 168/400 (42%), Gaps = 21/400 (5%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
L D +G+RYLD S V GH + + + + Q +L V S + + + + +L+
Sbjct: 23 LYDDAGRRYLDGSSGALVANIGHGRAEVGERMAAQAARLPFVHGSQFSSDVLEEYAGRLA 82
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
+ S G+ A E A+K++ Y +G + K I SYHG +LG+LA +
Sbjct: 83 RFVGLPTFRFWAVSGGSEATESAVKLARQYHVERGEPGRFKVITRVPSYHGASLGSLAAS 142
Query: 148 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXX 207
+ + +E+YT L+ P G E R +L ++
Sbjct: 143 GMGARRELYTPLMRPEAWPKLPKPDPARNGAEDAEGLRA------LLEREGPETVAAFMA 196
Query: 208 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH-AEIWPDF 266
EP+V + + Y + VR+IC+ I IADE+ G GR G A + + PD
Sbjct: 197 EPVVGASDAALAPAPGYYERVRDICDEAGIIFIADEVMSGMGRCGSPLALSRWSGVTPDI 256
Query: 267 LCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFN 326
L KG+ GY PL+ ++ F+H +Y+G+P++ A L+ L+I
Sbjct: 257 AVLGKGLAAGYAPLAGLLAAP--QVYETVMGGSGAFMHGFTYAGHPVSVAAGLSVLDIVE 314
Query: 327 KDNILQRISQDMKKITKALTSLITH-PKIINFR---QKGMIWAFDVIIEDPEQIETFSKK 382
++++ + ++ L +L P+++ R + D+ + + +
Sbjct: 315 REDLTGAAKERGAQLLAGLQALQARFPQMMQVRGTGLLLGVVLGDLATGQAFETPGIASR 374
Query: 383 FFVAALKNELLLRP--------IGNTVYLMPPYILNKNEI 414
AALK L+ P G+ + L PP + E+
Sbjct: 375 IGAAALKRGLITYPGSGAEPNGRGDHLLLGPPLSITAAEV 414
>pdb|2E54|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase From
Thermotoga Maritima
Length = 385
Score = 135 bits (339), Expect = 6e-32, Method: Compositional matrix adjust.
Identities = 106/397 (26%), Positives = 184/397 (46%), Gaps = 46/397 (11%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-HKPV 79
K SW + D G YLD S VN+ GHS+ + +A+K+Q KL H SNL ++P
Sbjct: 18 KGSW---IYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHC--SNLFWNRPQ 72
Query: 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
++L+E LS T G F+ + G A E A+K++ + K K + + NS+HG
Sbjct: 73 MELAELLSKNTFG--GKVFFANTGTEANEAAIKIA-RKYGKKKSEKKYRILSAHNSFHGR 129
Query: 140 TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199
TLG+L T +++ + L+ + ++ + S + CA+F
Sbjct: 130 TLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKMSED---VCAVF---------- 176
Query: 200 NKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 259
EP +Q G++ +L+ R++C+ Y+ L+ DE+ G GRTGK FA +
Sbjct: 177 -------LEP-IQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQK 228
Query: 260 AEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAAL 319
+ PD L +KG+ GG +P+ V+ + H ++ GNPLAC A +
Sbjct: 229 YGVVPDVLTTAKGLGGG-VPIGAVIVNERANVLEPGD-------HGTTFGGNPLACRAGV 280
Query: 320 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIET 378
++ K+ L+ + + + K L + ++ + R G++ + E
Sbjct: 281 TVIKELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQF------REEV 334
Query: 379 FSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEI 414
+++ +N+LL+ P G NT+ +PP + EI
Sbjct: 335 SNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEI 371
>pdb|3RUY|A Chain A, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
pdb|3RUY|B Chain B, Crystal Structure Of The Ornithine-Oxo Acid Transaminase
Rocd From Bacillus Anthracis
Length = 392
Score = 133 bits (334), Expect = 2e-31, Method: Compositional matrix adjust.
Identities = 103/404 (25%), Positives = 182/404 (45%), Gaps = 45/404 (11%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+VI + W + D G RY+D +S++ GH + I AL +Q N++ + S
Sbjct: 20 IVISKAEGVW---VEDPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRV--TLTSRA 74
Query: 75 THKPVI-KLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN--KGFLNKKKFIC 131
H + EK++ LT ++ + GA AVE A+K + + Y+ K N+ + I
Sbjct: 75 FHSDQLGPWYEKVAKLTNKEM--VLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIV 132
Query: 132 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191
++++HG T+GA+++++ + +K + +L +I D + + N A F L
Sbjct: 133 CEDNFHGRTMGAVSMSSNEEYKRGFGPMLPGIIVIPYGDLEALKAAITPN----TAAFIL 188
Query: 192 EILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251
E +Q G+ + + +LK E+C N+ +ADEI G GRT
Sbjct: 189 E-----------------PIQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRT 231
Query: 252 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGN 311
GK FAC+ + PD L + GG P+S H ++ GN
Sbjct: 232 GKVFACDWDNVTPDMYILGXALGGGVFPISCAAANRDILGVFEPGS------HGSTFGGN 285
Query: 312 PLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE 371
PLAC ++A LE+ ++ + +R Q +K+ L I +P I R KG+ + IE
Sbjct: 286 PLACAVSIAALEVLEEEKLTERSLQLGEKLVGQLKE-IDNPMITEVRGKGLF----IGIE 340
Query: 372 DPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQ 415
E + ++ A L L N + + PP ++++ +++
Sbjct: 341 LNEPARPYCEQLKAAGL---LCKETHENVIRIAPPLVISEEDLE 381
>pdb|2ORD|A Chain A, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
pdb|2ORD|B Chain B, Crystal Structure Of Acetylornithine Aminotransferase (Ec
2.6.1.11) (Acoat) (Tm1785) From Thermotoga Maritima At
1.40 A Resolution
Length = 397
Score = 132 bits (333), Expect = 3e-31, Method: Compositional matrix adjust.
Identities = 106/397 (26%), Positives = 181/397 (45%), Gaps = 46/397 (11%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLT-HKPV 79
K SW + D G YLD S VN+ GHS+ + +A+K+Q KL H SNL ++P
Sbjct: 30 KGSW---IYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHC--SNLFWNRPQ 84
Query: 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
+L+E LS T G F+ + G A E A+K++ + K K + + NS+HG
Sbjct: 85 XELAELLSKNTFG--GKVFFANTGTEANEAAIKIA-RKYGKKKSEKKYRILSAHNSFHGR 141
Query: 140 TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199
TLG+L T +++ + L+ + ++ + S + CA+F
Sbjct: 142 TLGSLTATGQPKYQKPFEPLVPGFEYFEFNNVEDLRRKXSED---VCAVF---------- 188
Query: 200 NKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 259
EP +Q G++ +L+ R++C+ Y+ L+ DE+ G GRTGK FA +
Sbjct: 189 -------LEP-IQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGXGRTGKLFAYQK 240
Query: 260 AEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAAL 319
+ PD L +KG+ GG +P+ V+ + H ++ GNPLAC A +
Sbjct: 241 YGVVPDVLTTAKGLGGG-VPIGAVIVNERANVLEPGD-------HGTTFGGNPLACRAGV 292
Query: 320 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIET 378
++ K+ L+ + + + K L ++ + R G+ + E
Sbjct: 293 TVIKELTKEGFLEEVEEKGNYLXKKLQEXKEEYDVVADVRGXGLXIGIQF------REEV 346
Query: 379 FSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEI 414
+++ +N+LL+ P G NT+ +PP + EI
Sbjct: 347 SNREVATKCFENKLLVVPAGNNTIRFLPPLTVEYGEI 383
>pdb|1VEF|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1VEF|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKG|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|A Chain A, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
pdb|1WKH|B Chain B, Acetylornithine Aminotransferase From Thermus Thermophilus
Hb8
Length = 395
Score = 132 bits (331), Expect = 5e-31, Method: Compositional matrix adjust.
Identities = 104/410 (25%), Positives = 171/410 (41%), Gaps = 47/410 (11%)
Query: 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS 72
++L+I + + W D G Y+D + + V GH N + +A+K Q L M
Sbjct: 27 HDLLIVRGQGARVW---DAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETL-MAMPQ 82
Query: 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132
L + L+++ +L F + G A E ALK + + +KKF+
Sbjct: 83 TLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALK------FARAHTGRKKFVAA 136
Query: 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192
+ G T+G+L+VT ++E + L+ I D+E
Sbjct: 137 MRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIP--------------------YNDVE 176
Query: 193 ILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252
L + + EP VQ GG+ +L+ REI LI DEI G GRTG
Sbjct: 177 ALKRAVDEETAAVILEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG 235
Query: 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNP 312
K FA EH I PD L L+K + GG +PL + + + H ++ GNP
Sbjct: 236 KRFAFEHFGIVPDILTLAKALGGG-VPLGVAVMREEVARSMPKGG------HGTTFGGNP 288
Query: 313 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIED 372
LA A +A + + + +R ++ + L + I PKI R G++ ++ +
Sbjct: 289 LAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRA-IPSPKIREVRGMGLMVGLELKEKA 347
Query: 373 PEQIETFSKKFFVAALKNELLLRPIGNTV-YLMPPYILNKNEIQHMTSAI 421
I K+ V AL+ G TV +PP ++ K +++ + A+
Sbjct: 348 APYIARLEKEHRVLALQA-------GPTVIRFLPPLVIEKEDLERVVEAV 390
>pdb|4ADB|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADB|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADC|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|C Chain C, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADD|D Chain D, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|A Chain A, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
pdb|4ADE|B Chain B, Structural And Functional Study Of Succinyl-ornithine
Transaminase From E. Coli
Length = 406
Score = 128 bits (321), Expect = 7e-30, Method: Compositional matrix adjust.
Identities = 85/309 (27%), Positives = 147/309 (47%), Gaps = 31/309 (10%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
L D GK Y+D VN GH++ + +AL Q +K H + T++PV++L++KL
Sbjct: 33 LWDQQGKEYIDFAGGIAVNALGHAHPELREALNEQASKFWHTG-NGYTNEPVLRLAKKLI 91
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
T F+ + GA A E ALK++ + +++ +K + +N++HG TL ++
Sbjct: 92 DATFAD--RVFFCNSGAEANEAALKLARKFAHDRYGSHKSGIVAFKNAFHGRTLFTVSAG 149
Query: 148 NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXXX 207
++ + + L I +IN ++ + + CA+
Sbjct: 150 GQPAYSQDFAPLPAD---IRHAAYNDINSASALIDDSTCAVI-----------------V 189
Query: 208 EPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFL 267
EP +Q GG++ + +L+ +RE+CN +N LI DE+ G GRTG+ +A H + PD L
Sbjct: 190 EP-IQGEGGVVPASNAFLQGLRELCNRHNALLIFDEVQTGVGRTGELYAYMHYGVTPDLL 248
Query: 268 CLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNK 327
+K + GG+ P+ ++ T+ H +Y GNPLA A LE+ N
Sbjct: 249 TTAKALGGGF-PVGALLATEECARVMTVGT------HGTTYGGNPLASAVAGKVLELINT 301
Query: 328 DNILQRISQ 336
+L + Q
Sbjct: 302 PEMLNGVKQ 310
>pdb|1SZK|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
pdb|1SZK|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: E211s
Length = 426
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/418 (26%), Positives = 184/418 (44%), Gaps = 34/418 (8%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI 80
+N W DV G+ YLD V GH + + A++ QL KL H L ++P +
Sbjct: 31 ENCRVW---DVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYL 87
Query: 81 KLSEKLSSLTQYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
+L E ++ + G+ AVE A+K++ + + I +YHG
Sbjct: 88 ELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA------RAATKRSGTIAFSGAYHGR 141
Query: 140 TLGALAVTN-IQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKK 197
T LA+T + + + Y P I++ ++ I R IF +
Sbjct: 142 THYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR--IFKND----A 195
Query: 198 NHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 257
EP VQ +GG +++ +R +C+ + I LIADE+ G GRTG FA
Sbjct: 196 APEDIAAIVIEP-VQGSGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAM 254
Query: 258 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCA 317
E + PD +K I GG+ PL+ V +Y+GNP+AC A
Sbjct: 255 EQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAPGGL------GGTYAGNPIACVA 307
Query: 318 ALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQI 376
AL L++F ++N+LQ+ + +K+ L ++ HP+I + R G + A + + ED +
Sbjct: 308 ALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHN 366
Query: 377 ETFSK--KFFVAALKNELLL----RPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
+ +K VA +++ L+ P N + ++ P + +I+ I Q F+E
Sbjct: 367 KPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEA 424
>pdb|1SZS|A Chain A, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|B Chain B, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|C Chain C, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
pdb|1SZS|D Chain D, The Structure Of Gamma-aminobutyrate Aminotransferase
Mutant: I50q
Length = 426
Score = 126 bits (316), Expect = 3e-29, Method: Compositional matrix adjust.
Identities = 109/418 (26%), Positives = 183/418 (43%), Gaps = 34/418 (8%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI 80
+N W DV G+ YLD V GH + + A++ QL KL H L ++P +
Sbjct: 31 ENCRVW---DVEGREYLDFAGGQAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYL 87
Query: 81 KLSEKLSSLTQYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
+L E ++ + G+ AVE A+K++ + + I +YHG
Sbjct: 88 ELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA------RAATKRSGTIAFSGAYHGR 141
Query: 140 TLGALAVTN-IQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKK 197
T LA+T + + + Y P I++ ++ I R IF +
Sbjct: 142 THYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR--IFKND----A 195
Query: 198 NHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 257
EP VQ GG +++ +R +C+ + I LIADE+ G GRTG FA
Sbjct: 196 APEDIAAIVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAM 254
Query: 258 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCA 317
E + PD +K I GG+ PL+ V +Y+GNP+AC A
Sbjct: 255 EQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAPGGL------GGTYAGNPIACVA 307
Query: 318 ALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQI 376
AL L++F ++N+LQ+ + +K+ L ++ HP+I + R G + A + + ED +
Sbjct: 308 ALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHN 366
Query: 377 ETFSK--KFFVAALKNELLL----RPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
+ +K VA +++ L+ P N + ++ P + +I+ I Q F+E
Sbjct: 367 KPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEA 424
>pdb|1SF2|A Chain A, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|B Chain B, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|C Chain C, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SF2|D Chain D, Structure Of E. Coli Gamma-Aminobutyrate Aminotransferase
pdb|1SFF|A Chain A, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|B Chain B, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|C Chain C, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
pdb|1SFF|D Chain D, Structure Of Gamma-Aminobutyrate Aminotransferase Complex
With Aminooxyacetate
Length = 426
Score = 125 bits (314), Expect = 5e-29, Method: Compositional matrix adjust.
Identities = 109/418 (26%), Positives = 183/418 (43%), Gaps = 34/418 (8%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI 80
+N W DV G+ YLD V GH + + A++ QL KL H L ++P +
Sbjct: 31 ENCRVW---DVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYL 87
Query: 81 KLSEKLSSLTQYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
+L E ++ + G+ AVE A+K++ + + I +YHG
Sbjct: 88 ELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA------RAATKRSGTIAFSGAYHGR 141
Query: 140 TLGALAVTN-IQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKK 197
T LA+T + + + Y P I++ ++ I R IF +
Sbjct: 142 THYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR--IFKND----A 195
Query: 198 NHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 257
EP VQ GG +++ +R +C+ + I LIADE+ G GRTG FA
Sbjct: 196 APEDIAAIVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRTGTLFAM 254
Query: 258 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCA 317
E + PD +K I GG+ PL+ V +Y+GNP+AC A
Sbjct: 255 EQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAPGGL------GGTYAGNPIACVA 307
Query: 318 ALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQI 376
AL L++F ++N+LQ+ + +K+ L ++ HP+I + R G + A + + ED +
Sbjct: 308 ALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHN 366
Query: 377 ETFSK--KFFVAALKNELLL----RPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
+ +K VA +++ L+ P N + ++ P + +I+ I Q F+E
Sbjct: 367 KPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEA 424
>pdb|1SZU|A Chain A, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|B Chain B, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|C Chain C, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
pdb|1SZU|D Chain D, The Structure Of Gamma-Aminobutyrate Aminotransferase
Mutant: V241a
Length = 426
Score = 123 bits (309), Expect = 2e-28, Method: Compositional matrix adjust.
Identities = 109/418 (26%), Positives = 182/418 (43%), Gaps = 34/418 (8%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI 80
+N W DV G+ YLD V GH + + A++ QL KL H L ++P +
Sbjct: 31 ENCRVW---DVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVLAYEPYL 87
Query: 81 KLSEKLSSLTQYKLGH-CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
+L E ++ + G+ AVE A+K++ + + I +YHG
Sbjct: 88 ELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIA------RAATKRSGTIAFSGAYHGR 141
Query: 140 TLGALAVTN-IQSFKEIYTSLLNKTYIITTP-DSRNINKGNSANEIARCAIFDLEILLKK 197
T LA+T + + + Y P I++ ++ I R IF +
Sbjct: 142 THYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR--IFKND----A 195
Query: 198 NHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 257
EP VQ GG +++ +R +C+ + I LIADE G GRTG FA
Sbjct: 196 APEDIAAIVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEAQSGAGRTGTLFAM 254
Query: 258 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCA 317
E + PD +K I GG+ PL+ V +Y+GNP+AC A
Sbjct: 255 EQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAPGGL------GGTYAGNPIACVA 307
Query: 318 ALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQI 376
AL L++F ++N+LQ+ + +K+ L ++ HP+I + R G + A + + ED +
Sbjct: 308 ALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LFEDGDHN 366
Query: 377 ETFSK--KFFVAALKNELLL----RPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
+ +K VA +++ L+ P N + ++ P + +I+ I Q F+E
Sbjct: 367 KPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQCFDEA 424
>pdb|2PB0|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB0|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|A Chain A, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
pdb|2PB2|B Chain B, Structure Of Biosynthetic N-Acetylornithine
Aminotransferase From Salmonella Typhimurium: Studies On
Substrate Specificity And Inhibitor Binding
Length = 420
Score = 121 bits (304), Expect = 6e-28, Method: Compositional matrix adjust.
Identities = 100/412 (24%), Positives = 170/412 (41%), Gaps = 40/412 (9%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPV 79
K S W D GK Y+D V GH + + +ALK+Q L H SN+ T++P
Sbjct: 47 KGSRVW---DQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHT--SNVFTNEPA 101
Query: 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
++L KL T + + + G A E A K++ HY + K K I N++HG
Sbjct: 102 LRLGRKLIDATFAE--RVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGR 159
Query: 140 TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199
+L ++V + + + G +I DL +
Sbjct: 160 SLFTVSVGGQPKYSDGF--------------------GPKPADIIHVPFNDLHAVKAVMD 199
Query: 200 NKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEH 259
+ EP +Q GG+ +LK +R++C+ + L+ DE+ G GRTG FA H
Sbjct: 200 DHTCAVVVEP-IQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMH 258
Query: 260 AEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAAL 319
+ PD L +K + GG+ P+S ++TT H +Y GNPLAC A
Sbjct: 259 YGVTPDILTSAKALGGGF-PVSAMLTTQEIASAFHVGS------HGSTYGGNPLACAVAG 311
Query: 320 ATLEIFNKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQIET 378
A +I N +LQ I ++ + L ++ I + R G++ ++ + +
Sbjct: 312 AAFDIINTPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIGAELKPKYKGRARD 371
Query: 379 FSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEVIT 430
F + A ++L + + P ++ + +I Q +V+
Sbjct: 372 F---LYAGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKVVA 420
>pdb|4A0G|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|C Chain C, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0G|D Chain D, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana In Its Apo Form.
pdb|4A0H|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0H|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To 7-Keto
8-Amino Pelargonic Acid (Kapa)
pdb|4A0R|A Chain A, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb).
pdb|4A0R|B Chain B, Structure Of Bifunctional Dapa Aminotransferase-Dtb
Synthetase From Arabidopsis Thaliana Bound To
Dethiobiotin (Dtb)
Length = 831
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 100/426 (23%), Positives = 175/426 (41%), Gaps = 58/426 (13%)
Query: 35 RYLDAISSWWVNLFGHSNSY---INKALKNQLNKLEHVMLSNLTHKPVIKLSEKL-SSLT 90
+ DA +SWW G ++ + + + + HVM ++P +K +E L +
Sbjct: 381 QQFDACASWWTQ--GPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLDGVG 438
Query: 91 QYKLGHCFYGSDGASAVEVALKMSFH-YWYNKGFLNKK--------KFICLQNSYHGETL 141
+ ++ +G++A+E+ALKM+F + + F K I L+ SYHG+TL
Sbjct: 439 KGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTL 498
Query: 142 GALAVTNIQSF-----KEIYTS---LLNKTYIITTPDSRNINKGNSANEIA--------R 185
GA+ + + YT L+ + + S NI+ S +EIA R
Sbjct: 499 GAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSR 558
Query: 186 CAIFD-----------LEILLKKNHNKXXXXXX---------EPLVQCAGGMIMYDSIYL 225
IFD L K+ + EP++ AGGM M D ++
Sbjct: 559 DEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDPLFQ 618
Query: 226 KLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMT 285
+++ C N I +I DE+ G R G E PD C +K +TGG +PL++ +
Sbjct: 619 RVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAVTLA 678
Query: 286 TDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI---- 341
TD LH HSYS + + C A ++ F I+ K +
Sbjct: 679 TDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLRELW 738
Query: 342 -TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ--IETFSKKFFVAALKNELLLRPIG 398
+ + + +H + G ++A ++ + ++K + ++ + RP+G
Sbjct: 739 DEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTRPLG 798
Query: 399 NTVYLM 404
N +YLM
Sbjct: 799 NVIYLM 804
>pdb|2CAN|A Chain A, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|B Chain B, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|2CAN|C Chain C, Human Ornithine Aminotransferase Complexed With L-Canaline
pdb|1GBN|A Chain A, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|B Chain B, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
pdb|1GBN|C Chain C, Human Ornithine Aminotransferase Complexed With The
Neurotoxin Gabaculine
Length = 402
Score = 119 bits (298), Expect = 3e-27, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 181/401 (45%), Gaps = 39/401 (9%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSEKL 86
L DV G++Y D +SS+ GH + I ALK+Q++KL + S + V+ + E +
Sbjct: 33 LWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKL--TLTSRAFYNNVLGEYEEYI 90
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGFLN-KKKFICLQNSYHGETLGAL 144
+ L Y + G A E A K++ + Y KG K K + ++ G TL A+
Sbjct: 91 TKLFNYH--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI 148
Query: 145 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXX 204
+ + + + + + II D + + +A +
Sbjct: 149 SSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMV---------------- 192
Query: 205 XXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264
EP +Q G+++ D YL VRE+C + + IADEI G RTG++ A ++ + P
Sbjct: 193 ---EP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRP 248
Query: 265 DFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEI 324
D + L K ++GG P+S V+ D H +Y GNPL C A+A LE+
Sbjct: 249 DIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HGSTYGGNPLGCRVAIAALEV 302
Query: 325 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 384
++N+ + + + L L + + R KG++ A ++I++ + + + K
Sbjct: 303 LEEENLAENADKLGIILRNELMKLPSD-VVTAVRGKGLLNA--IVIKETKDWDAW--KVC 357
Query: 385 VAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQT 424
+ N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 358 LRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT 398
>pdb|3Q8N|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3Q8N|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 453
Score = 119 bits (297), Expect = 4e-27, Method: Compositional matrix adjust.
Identities = 105/411 (25%), Positives = 178/411 (43%), Gaps = 30/411 (7%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
L D G + +D S V G+S + A+ Q+ H ++ +K++E L+
Sbjct: 62 LADADGNQLIDFGSGIAVTTVGNSAPAVVDAVTQQVAAFTHTCFMVTPYEGYVKVAEHLN 121
Query: 88 SLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 145
LT ++ + S GA AVE A+K++ + + ++ + ++YHG T +A
Sbjct: 122 RLTPGDHEKRTALFNS-GAEAVENAVKIA------RAYTRRQAVVVFDHAYHGRTNLTMA 174
Query: 146 VTNI-QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXX 204
+T Q +K + N+ Y + P S G + A DL I + +
Sbjct: 175 MTAKNQPYKHGFGPFANEVYRV--PTSYPFRDGETDGAAAAAHALDL-INKQVGADNVAA 231
Query: 205 XXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264
EP V GG ++ +L +++ C + +ADE+ G RTG FACEH + P
Sbjct: 232 VVIEP-VHGEGGFVVPAPGFLGALQKWCTDNGAVFVADEVQTGFARTGALFACEHENVVP 290
Query: 265 DFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEI 324
D + +KGI GG LPLS V +Y GNPLAC AALA ++
Sbjct: 291 DLIVTAKGIAGG-LPLSAV------TGRAEIMDGPQSGGLGGTYGGNPLACAAALAVIDT 343
Query: 325 FNKDNILQR---ISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIET-FS 380
++N++ R I + M AL + P+I R +G + A +++ + + +
Sbjct: 344 IERENLVARARAIGETMLSRLGALAA--ADPRIGEVRGRGAMIAVELVKPGTTEPDADLT 401
Query: 381 KKFFVAALKNELLL---RPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
K+ AA L++ GN + +PP + + + + F EV
Sbjct: 402 KRVAAAAHAQGLVVLTCGTYGNVLRFLPPLSMPDHLLDEGLDILAAVFAEV 452
>pdb|1OAT|A Chain A, Ornithine Aminotransferase
pdb|1OAT|B Chain B, Ornithine Aminotransferase
pdb|1OAT|C Chain C, Ornithine Aminotransferase
pdb|2OAT|A Chain A, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|B Chain B, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
pdb|2OAT|C Chain C, Ornithine Aminotransferase Complexed With
5-Fluoromethylornithine
Length = 439
Score = 118 bits (296), Expect = 5e-27, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 181/401 (45%), Gaps = 39/401 (9%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSEKL 86
L DV G++Y D +SS+ GH + I ALK+Q++KL + S + V+ + E +
Sbjct: 70 LWDVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKL--TLTSRAFYNNVLGEYEEYI 127
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGFLN-KKKFICLQNSYHGETLGAL 144
+ L Y + G A E A K++ + Y KG K K + ++ G TL A+
Sbjct: 128 TKLFNYH--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI 185
Query: 145 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXX 204
+ + + + + + II D + + +A +
Sbjct: 186 SSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMV---------------- 229
Query: 205 XXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264
EP +Q G+++ D YL VRE+C + + IADEI G RTG++ A ++ + P
Sbjct: 230 ---EP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRP 285
Query: 265 DFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEI 324
D + L K ++GG P+S V+ D H +Y GNPL C A+A LE+
Sbjct: 286 DIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HGSTYGGNPLGCRVAIAALEV 339
Query: 325 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 384
++N+ + + + L L + + R KG++ A ++I++ + + + K
Sbjct: 340 LEEENLAENADKLGIILRNELMKLPSD-VVTAVRGKGLLNA--IVIKETKDWDAW--KVC 394
Query: 385 VAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQT 424
+ N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 395 LRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT 435
>pdb|2BYJ|A Chain A, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|B Chain B, Ornithine Aminotransferase Mutant Y85i
pdb|2BYJ|C Chain C, Ornithine Aminotransferase Mutant Y85i
Length = 439
Score = 116 bits (291), Expect = 2e-26, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 180/401 (44%), Gaps = 39/401 (9%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSEKL 86
L DV G++Y D +SS GH + I ALK+Q++KL + S + V+ + E +
Sbjct: 70 LWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKL--TLTSRAFYNNVLGEYEEYI 127
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGFLN-KKKFICLQNSYHGETLGAL 144
+ L Y + G A E A K++ + Y KG K K + ++ G TL A+
Sbjct: 128 TKLFNYH--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI 185
Query: 145 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXX 204
+ + + + + + II D + + +A +
Sbjct: 186 SSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMV---------------- 229
Query: 205 XXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264
EP +Q G+++ D YL VRE+C + + IADEI G RTG++ A ++ + P
Sbjct: 230 ---EP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRP 285
Query: 265 DFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEI 324
D + L K ++GG P+S V+ D H +Y GNPL C A+A LE+
Sbjct: 286 DIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HGSTYGGNPLGCRVAIAALEV 339
Query: 325 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 384
++N+ + + + L L + + R KG++ A ++I++ + + + K
Sbjct: 340 LEEENLAENADKLGIILRNELMKLPSD-VVTAVRGKGLLNA--IVIKETKDWDAW--KVC 394
Query: 385 VAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQT 424
+ N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 395 LRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT 435
>pdb|2BYL|A Chain A, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|B Chain B, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
pdb|2BYL|C Chain C, Structure Of Ornithine Aminotransferase Triple Mutant Y85i
Y55a G320f
Length = 439
Score = 115 bits (288), Expect = 4e-26, Method: Compositional matrix adjust.
Identities = 101/401 (25%), Positives = 180/401 (44%), Gaps = 39/401 (9%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI-KLSEKL 86
L DV G++Y D +SS GH + I ALK+Q++KL + S + V+ + E +
Sbjct: 70 LWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKL--TLTSRAFYNNVLGEYEEYI 127
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN-KGFLN-KKKFICLQNSYHGETLGAL 144
+ L Y + G A E A K++ + Y KG K K + ++ G TL A+
Sbjct: 128 TKLFNYH--KVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFWGRTLSAI 185
Query: 145 AVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXX 204
+ + + + + + II D + + +A +
Sbjct: 186 SSSTDPTSYDGFGPFMPGFDIIPYNDLPALERALQDPNVAAFMV---------------- 229
Query: 205 XXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264
EP +Q G+++ D YL VRE+C + + IADEI G RTG++ A ++ + P
Sbjct: 230 ---EP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLAVDYENVRP 285
Query: 265 DFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEI 324
D + L K ++GG P+S V+ D H +Y GNPL C A+A LE+
Sbjct: 286 DIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HFSTYGGNPLGCRVAIAALEV 339
Query: 325 FNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFF 384
++N+ + + + L L + + R KG++ A ++I++ + + + K
Sbjct: 340 LEEENLAENADKLGIILRNELMKLPSD-VVTAVRGKGLLNA--IVIKETKDWDAW--KVC 394
Query: 385 VAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQT 424
+ N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 395 LRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKT 435
>pdb|3OKS|A Chain A, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|B Chain B, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|C Chain C, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
pdb|3OKS|D Chain D, Crystal Structure Of 4-Aminobutyrate Transaminase From
Mycobacterium Smegmatis
Length = 451
Score = 114 bits (286), Expect = 8e-26, Method: Compositional matrix adjust.
Identities = 101/400 (25%), Positives = 166/400 (41%), Gaps = 38/400 (9%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89
DV G R +D S V G+S + +A+++Q+ H ++ + + E+L+ L
Sbjct: 57 DVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVTPYEGYVAVCEQLNRL 116
Query: 90 TQYKLG--HCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
T + + S G+ AVE A+K++ + + K + ++YHG T +A+T
Sbjct: 117 TPVRGDKRSALFNS-GSEAVENAVKIARSHTH------KPAVVAFDHAYHGRTNLTMALT 169
Query: 148 -NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK--------- 197
+ +K+ + + Y P S E+A D E+ K+
Sbjct: 170 AKVMPYKDGFGPFAPEIY--RAPLSYPFRDAEFGKELAT----DGELAAKRAITVIDKQI 223
Query: 198 NHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 257
+ EP +Q GG I+ +L + + C ++ IADE+ G RTG FAC
Sbjct: 224 GADNLAAVVIEP-IQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFARTGAMFAC 282
Query: 258 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCA 317
EH I PD + + GI GG LPLS V +Y GNP+AC A
Sbjct: 283 EHEGIDPDLIVTAXGIAGG-LPLSAVTGRAEIMDSPHVSGL------GGTYGGNPIACAA 335
Query: 318 ALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVIIEDPEQI 376
ALAT+E + ++ R Q K + L L +I + R +G + A +++ +
Sbjct: 336 ALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAMELVKAGTTEP 395
Query: 377 ETFSKKFFVAALKNE----LLLRPIGNTVYLMPPYILNKN 412
+ K A L GN V +PP + +
Sbjct: 396 DADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDD 435
>pdb|1D7R|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With 5pa
pdb|1D7S|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Dcs
pdb|1D7U|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Lcs
pdb|1D7V|A Chain A, Crystal Structure Of The Complex Of 2,2-Dialkylglycine
Decarboxylase With Nma
Length = 433
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/424 (22%), Positives = 183/424 (43%), Gaps = 26/424 (6%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
++I K S+ + D G+ LD S + GH + I + KL+H + S +
Sbjct: 27 MIIERAKGSFVY---DADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSGM 82
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
+PV+ L+ +L+++T L S GA + E A++M+ K K + +
Sbjct: 83 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMA------KLVTGKYEIVGFAQ 136
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEI 193
S+HG T A + T K + + + ++ I P + R + N A + + ++
Sbjct: 137 SWHGMTGAAASATYSAGRKGVGPAAVG-SFAIPAPFTYRPRFERNGAYDYLAELDYAFDL 195
Query: 194 LLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
+ +++ EP++ +GG+I Y+ ++ C + LI DE G GRTG
Sbjct: 196 IDRQSSGNLAAFIAEPILS-SGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT 254
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPL 313
FAC+ + PD L LSK + G LPL+ ++T+ +L ++ +PL
Sbjct: 255 MFACQRDGVTPDILTLSKTLGAG-LPLAAIVTS----AAIEERAHELGYLFYTTHVSDPL 309
Query: 314 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIE- 371
L L++ +D ++ R + ++ + L L+ I + R +G++ +++ +
Sbjct: 310 PAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDR 369
Query: 372 -DPEQIETFSKKFFVAALK-----NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 425
E + K + N + L +G + PP ++++EI S + Q
Sbjct: 370 RTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAI 429
Query: 426 NEVI 429
+
Sbjct: 430 ERAL 433
>pdb|1DGD|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
pdb|1DGE|A Chain A, An Alkali Metal Ion Size-Dependent Switch In The Active
Site Structure Of Dialkylglycine Decarboxylase
Length = 432
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/424 (22%), Positives = 183/424 (43%), Gaps = 26/424 (6%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
++I K S+ + D G+ LD S + GH + I + KL+H + S +
Sbjct: 26 MIIERAKGSFVY---DADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSGM 81
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
+PV+ L+ +L+++T L S GA + E A++M+ K K + +
Sbjct: 82 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMA------KLVTGKYEIVGFAQ 135
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEI 193
S+HG T A + T K + + + ++ I P + R + N A + + ++
Sbjct: 136 SWHGMTGAAASATYSAGRKGVGPAAVG-SFAIPAPFTYRPRFERNGAYDYLAELDYAFDL 194
Query: 194 LLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
+ +++ EP++ +GG+I Y+ ++ C + LI DE G GRTG
Sbjct: 195 IDRQSSGNLAAFIAEPILS-SGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT 253
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPL 313
FAC+ + PD L LSK + G LPL+ ++T+ +L ++ +PL
Sbjct: 254 MFACQRDGVTPDILTLSKTLGAG-LPLAAIVTS----AAIEERAHELGYLFYTTHVSDPL 308
Query: 314 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIE- 371
L L++ +D ++ R + ++ + L L+ I + R +G++ +++ +
Sbjct: 309 PAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDR 368
Query: 372 -DPEQIETFSKKFFVAALK-----NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 425
E + K + N + L +G + PP ++++EI S + Q
Sbjct: 369 RTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAI 428
Query: 426 NEVI 429
+
Sbjct: 429 ERAL 432
>pdb|1M0N|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Aminocyclopentanephosphonate
pdb|1M0O|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Methylpropanephosphonate
pdb|1M0P|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
1- Amino-1-Phenylethanephosphonate
pdb|1M0Q|A Chain A, Structure Of Dialkylglycine Decarboxylase Complexed With
S- 1-Aminoethanephosphonate
pdb|1ZC9|A Chain A, The Crystal Structure Of Dialkylglycine Decarboxylase
Complex With Pyridoxamine 5-phosphate
pdb|1ZOB|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylases Bound
With Calcium Ion
pdb|1ZOD|A Chain A, Crystal Structure Of Dialkylglycine Decarboxylase Bound
With Cesium Ion
pdb|1DKA|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
pdb|2DKB|A Chain A, Dialkylglycine Decarboxylase Structure: Bifunctional
Active Site And Alkali Metal Binding Sites
Length = 433
Score = 114 bits (285), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/424 (22%), Positives = 183/424 (43%), Gaps = 26/424 (6%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
++I K S+ + D G+ LD S + GH + I + KL+H + S +
Sbjct: 27 MIIERAKGSFVY---DADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEM 82
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
+PV+ L+ +L+++T L S GA + E A++M+ K K + +
Sbjct: 83 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMA------KLVTGKYEIVGFAQ 136
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEI 193
S+HG T A + T K + + + ++ I P + R + N A + + ++
Sbjct: 137 SWHGMTGAAASATYSAGRKGVGPAAVG-SFAIPAPFTYRPRFERNGAYDYLAELDYAFDL 195
Query: 194 LLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
+ +++ EP++ +GG+I Y+ ++ C + LI DE G GRTG
Sbjct: 196 IDRQSSGNLAAFIAEPILS-SGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT 254
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPL 313
FAC+ + PD L LSK + G LPL+ ++T+ +L ++ +PL
Sbjct: 255 MFACQRDGVTPDILTLSKTLGAG-LPLAAIVTS----AAIEERAHELGYLFYTTHVSDPL 309
Query: 314 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIE- 371
L L++ +D ++ R + ++ + L L+ I + R +G++ +++ +
Sbjct: 310 PAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDR 369
Query: 372 -DPEQIETFSKKFFVAALK-----NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 425
E + K + N + L +G + PP ++++EI S + Q
Sbjct: 370 RTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAI 429
Query: 426 NEVI 429
+
Sbjct: 430 ERAL 433
>pdb|1Z3Z|A Chain A, The Crystal Structure Of A Dgd Mutant: Q52a
Length = 431
Score = 114 bits (284), Expect = 1e-25, Method: Compositional matrix adjust.
Identities = 94/424 (22%), Positives = 183/424 (43%), Gaps = 26/424 (6%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
++I K S+ + D G+ LD S + GH + I + KL+H + S +
Sbjct: 25 MIIERAKGSFVY---DADGRAILDFTSGAMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEM 80
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
+PV+ L+ +L+++T L S GA + E A++M+ K K + +
Sbjct: 81 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMA------KLVTGKYEIVGFAQ 134
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEI 193
S+HG T A + T K + + + ++ I P + R + N A + + ++
Sbjct: 135 SWHGMTGAAASATYSAGRKGVGPAAVG-SFAIPAPFTYRPRFERNGAYDYLAELDYAFDL 193
Query: 194 LLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
+ +++ EP++ +GG+I Y+ ++ C + LI DE G GRTG
Sbjct: 194 IDRQSSGNLAAFIAEPILS-SGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT 252
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPL 313
FAC+ + PD L LSK + G LPL+ ++T+ +L ++ +PL
Sbjct: 253 MFACQRDGVTPDILTLSKTLGAG-LPLAAIVTS----AAIEERAHELGYLFYTTHVSDPL 307
Query: 314 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIE- 371
L L++ +D ++ R + ++ + L L+ I + R +G++ +++ +
Sbjct: 308 PAAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDR 367
Query: 372 -DPEQIETFSKKFFVAALK-----NELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTF 425
E + K + N + L +G + PP ++++EI S + Q
Sbjct: 368 RTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAI 427
Query: 426 NEVI 429
+
Sbjct: 428 ERAL 431
>pdb|2EO5|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase From
Sulfolobus Tokodaii Strain7
Length = 419
Score = 108 bits (271), Expect = 4e-24, Method: Compositional matrix adjust.
Identities = 100/416 (24%), Positives = 184/416 (44%), Gaps = 49/416 (11%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHVMLSN 73
LVI + W + DV G +YLD S VN G S+ + K Q+ KL H ++
Sbjct: 26 LVIDHGEGVWIY---DVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAND 82
Query: 74 LTHKPVIKLSEKLSSLTQYKLGH----CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129
+ P ++L++KL + Y G+ F+ + G A+E ++K+ N G +K
Sbjct: 83 FYNIPQLELAKKLVT---YSPGNFQKKVFFSNSGTEAIEASIKVV----KNTG---RKYI 132
Query: 130 ICLQNSYHGETLGALAVTNIQSF-KEIYTSLLNKTYIITTPDS-RN---INKGNSANEIA 184
I +HG T G++++T ++ + I + + P+ RN IN + +E+
Sbjct: 133 IAFLGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELV 192
Query: 185 RCAIFDLEILLKKN---HNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIA 241
I +E + N + EP +Q GG ++ + ++++ Y I L+
Sbjct: 193 NRVIEFIEDYIFVNLVPPEEVAGIFFEP-IQGEGGYVIPPKNFFAELQKLAKKYGILLVD 251
Query: 242 DEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXX 301
DE+ +G GRTGK FA E+ PD + L+K + GG +P+ +
Sbjct: 252 DEVQMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDLDFKPG------- 304
Query: 302 FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKG 361
+HS+++ GN LAC ++I ++L +++ K + L L + R G
Sbjct: 305 -MHSNTFGGNALACAIGSKVIDIVK--DLLPHVNEIGKIFAEELQGLAD-----DVRGIG 356
Query: 362 MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNT-VYLMPPYILNKNEIQH 416
+ W + + + + K LLL P G + + ++PP ++++ E +
Sbjct: 357 LAWGLEY------NEKKVRDRIIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQ 406
>pdb|3FCR|A Chain A, Crystal Structure Of Putative Aminotransferase
(Yp_614685.1) From Silicibacter Sp. Tm1040 At 1.80 A
Resolution
Length = 459
Score = 108 bits (269), Expect = 7e-24, Method: Compositional matrix adjust.
Identities = 98/443 (22%), Positives = 194/443 (43%), Gaps = 34/443 (7%)
Query: 9 KKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE- 67
+ S N VI++ + + D G + LDA + + G+ I +A+ +Q +L
Sbjct: 28 RGESANRVIKTASGVF---IEDRDGTKLLDAFAGLYCVNVGYGRQEIAEAIADQARELAY 84
Query: 68 -HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNK 126
H + + T + I L++ + ++G G+ A E +K+ ++Y G K
Sbjct: 85 YHSYVGHGT-EASITLAKXILDRAPKNXSKVYFGLGGSDANETNVKLIWYYNNILGRPEK 143
Query: 127 KKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE--IA 184
KK I YHG L ++T ++ F + + + + P N E +A
Sbjct: 144 KKIISRWRGYHGSGLVTGSLTGLELFHKKFDLPVEQVIHTEAPYYFRREDLNQTEEQFVA 203
Query: 185 RCAIFDLEILLKK-NHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE 243
C + +LE L+++ + EP++ GG++ + Y + ++ + N ++I L+ADE
Sbjct: 204 HC-VAELEALIEREGADTIAAFIGEPILGT-GGIVPPPAGYWEAIQTVLNKHDILLVADE 261
Query: 244 IAVGCGRTGKFFACEHAEIWPDFLCLS-KGITGGYLPLSLVMTTDXX-XXXXXXXXXXXX 301
+ G GR G F +H + PD + ++ KG+T Y PLS + +D
Sbjct: 262 VVTGFGRLGTXFGSDHYGLEPDIITIAXKGLTSAYAPLSGSIVSDKVWKVLEQGTDENGP 321
Query: 302 FLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALT-SLITHPKIINFRQK 360
H +YS +P+ A +A L++ ++ N++ + + +L H + + R +
Sbjct: 322 IGHGWTYSAHPIGAAAGVANLKLLDELNLVSNAGEVGAYLNATXAEALSQHANVGDVRGE 381
Query: 361 GMIWAFDVIIEDPEQIETFSKKFFVAALK------------NELLLR--PIGNTVYLMPP 406
G++ A + ++D + S+ FF AA K ++++ R P G+ + PP
Sbjct: 382 GLLCAVE-FVKDRD-----SRTFFDAADKIGPQISAKLLEQDKIIARAXPQGDILGFAPP 435
Query: 407 YILNKNEIQHMTSAIFQTFNEVI 429
+ L + E + + V+
Sbjct: 436 FCLTRAEADQVVEGTLRAVKAVL 458
>pdb|1Z7D|A Chain A, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|B Chain B, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|C Chain C, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|D Chain D, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|E Chain E, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
pdb|1Z7D|F Chain F, Ornithine Aminotransferase Py00104 From Plasmodium Yoelii
Length = 433
Score = 108 bits (269), Expect = 8e-24, Method: Compositional matrix adjust.
Identities = 101/410 (24%), Positives = 172/410 (41%), Gaps = 40/410 (9%)
Query: 20 LKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPV 79
LK + + DV+ KRY D +S++ GH + I A+ NQ L + S
Sbjct: 51 LKRAKGVFVYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNL--TICSRAFFSVP 108
Query: 80 IKLSEK-LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN--KGFLNKKKFICLQNSY 136
+ + E+ L++L Y + GA A E A K+ + Y K N K + +N++
Sbjct: 109 LGICERYLTNLLGYD--KVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNF 166
Query: 137 HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLK 196
G TLG ++ + + N G A + ++ DLE L +
Sbjct: 167 SGRTLGCISASTTKKCTS--------------------NFGPFAPQFSKVPYDDLEALEE 206
Query: 197 KNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 256
+ + +Q G+I+ YL+ V +IC YN+ +ADE+ G GRTGK
Sbjct: 207 ELKDPNVCAFIVEPIQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC 266
Query: 257 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACC 316
H + PD + L K ++GG+ P+S V+ D H +Y GNPLA
Sbjct: 267 VHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGE------HGSTYGGNPLAAS 320
Query: 317 AALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQ 375
+ L + + + + + + L + KI+ + R KG++ A + E
Sbjct: 321 ICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELVNV 380
Query: 376 IETFSKKFFVAALKNELLLRPIGN-TVYLMPPYILNKNEIQHMTSAIFQT 424
++ K +N L+ R + + T+ L PP + K ++ T I +T
Sbjct: 381 LDICLK-----LKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKT 425
>pdb|3LG0|A Chain A, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|B Chain B, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|C Chain C, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3LG0|D Chain D, Structure Of Plasmodium Falciparum Ornithine
Delta-Aminotransferase
pdb|3NTJ|A Chain A, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|B Chain B, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|C Chain C, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
pdb|3NTJ|D Chain D, Redox Regulation Of Plasmodium Falciparum Ornithine Delta-
Aminotransferase
Length = 422
Score = 106 bits (265), Expect = 2e-23, Method: Compositional matrix adjust.
Identities = 101/410 (24%), Positives = 165/410 (40%), Gaps = 40/410 (9%)
Query: 20 LKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPV 79
LK + D+ +RY D +S++ GH + I A+ NQ KL + S
Sbjct: 32 LKRGKGVFVYDIEDRRYYDFLSAYSSVNQGHCHPDILNAMINQAKKL--TICSRAFFSDS 89
Query: 80 IKLSEK-LSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN--KGFLNKKKFICLQNSY 136
+ + E+ L++L Y + GA A E A K+ + Y K N K I N++
Sbjct: 90 LGVCERYLTNLFGYD--KVLMMNTGAEASETAYKLCRKWGYEVKKIPENSAKIIVCNNNF 147
Query: 137 HGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLK 196
G TLG ++ + + K N G + DLE L K
Sbjct: 148 SGRTLGCVSASTDKKCKN--------------------NFGPFVPNFLKVPYDDLEALEK 187
Query: 197 KNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 256
+ + VQ G+I+ Y V +C YN+ +ADE+ G GRTGK
Sbjct: 188 ELQDPNVCAFIVEPVQGEAGVIVPSDSYFPGVASLCKKYNVLFVADEVQTGLGRTGKLLC 247
Query: 257 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACC 316
H + PD + L K ++GG+ P+S ++ D H +Y GNPLA
Sbjct: 248 THHYGVKPDVILLGKALSGGHYPISAILANDDVMLVLKPGE------HGSTYGGNPLAAA 301
Query: 317 AALATLEIFNKDNILQRISQDMKKITKALTSLITHPKII-NFRQKGMIWAFDVIIEDPEQ 375
+ L++ + + + + + L + K++ R KG++ A + D
Sbjct: 302 ICVEALKVLINEKLCENADKLGAPFLQNLKEQLKDSKVVREVRGKGLLCAIE-FKNDLVN 360
Query: 376 IETFSKKFFVAALKNELLLRPIGN-TVYLMPPYILNKNEIQHMTSAIFQT 424
+ KF +N L+ R + + TV L PP + K ++ T I +T
Sbjct: 361 VWDICLKF----KENGLITRSVHDKTVRLTPPLCITKEQLDECTEIIVKT 406
>pdb|3R4T|A Chain A, Crystal Structure Of 4-Aminobutyrate Aminotransferase Gabt
From Mycobacterium Marinum Covalently Bound To Pyridoxal
Phosphate
Length = 467
Score = 105 bits (263), Expect = 4e-23, Method: Compositional matrix adjust.
Identities = 97/402 (24%), Positives = 172/402 (42%), Gaps = 42/402 (10%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89
D G R +D S V G+S + A+++Q+ + H ++ + ++E+L+ +
Sbjct: 74 DADGNRLIDLGSGIAVTTIGNSAPRVVDAVRDQVEQFTHTCFMVTPYEQYVAVAEQLNRI 133
Query: 90 TQ---YKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
T K F + GA AVE ++K++ + K+ + +YHG T +A+
Sbjct: 134 TPGSGEKRTVLF--NSGAEAVENSIKVA------RAHTRKQAVVAFDYAYHGRTNLTMAL 185
Query: 147 T--------NIQSF-KEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK 197
T F EIY + ++ Y D G A E A + D +I
Sbjct: 186 TAKSMPYKSGFGPFAPEIYRAPVSYPYRDNLLDKDIATDGELAAERA-INLIDKQI---- 240
Query: 198 NHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 257
EP + GG I+ +L ++ C + ++ IADE+ G RTG FAC
Sbjct: 241 GAANLAAVIIEP-IAGEGGFIVPADGFLPALQRWCRDNDVVFIADEVQTGFARTGAMFAC 299
Query: 258 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCA 317
+H + PD + + GI G+ PLS V ++ GNP+AC A
Sbjct: 300 DHENVEPDLIVTAXGIADGF-PLSAVTGRAEIMDAPHTSGL------GGTFGGNPVACAA 352
Query: 318 ALATLEIFNKDNILQRISQDMKKITKALTSL-ITHPKIINFRQKGMIWAFDVI---IEDP 373
ALAT+E +D +++R Q + + L L ++ + R +G + A +++ +P
Sbjct: 353 ALATIETIERDGMVERARQIERLVMDRLLRLQAADDRLGDVRGRGAMIAMELVKSGTAEP 412
Query: 374 EQIETFSKKFFVAALKNELLLRP---IGNTVYLMPPYILNKN 412
+ ++K AA +++ GN + L+PP ++
Sbjct: 413 DA--ALTQKLAAAAHAAGVIVLTCGMFGNVIRLLPPLTISDE 452
>pdb|4A0F|A Chain A, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form.
pdb|4A0F|B Chain B, Structure Of Selenomethionine Substituted Bifunctional
Dapa Aminotransferase-Dethiobiotin Synthetase From
Arabidopsis Thaliana In Its Apo Form
Length = 831
Score = 103 bits (257), Expect = 2e-22, Method: Compositional matrix adjust.
Identities = 95/425 (22%), Positives = 167/425 (39%), Gaps = 58/425 (13%)
Query: 35 RYLDAISSWWVNLFGHSNSY---INKALKNQLNKLEHVMLSNLTHKPVIKLSEKL-SSLT 90
+ DA +SWW G ++ + + + HV ++P +K +E L +
Sbjct: 381 QQFDACASWWTQ--GPDPTFQAELAREXGYTAARFGHVXFPENVYEPALKCAELLLDGVG 438
Query: 91 QYKLGHCFYGSDGASAVEVALKMSFH-YWYNKGFLNKK--------KFICLQNSYHGETL 141
+ ++ +G++A+E+ALK +F + + F K I L+ SYHG+TL
Sbjct: 439 KGWASRVYFSDNGSTAIEIALKXAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHGDTL 498
Query: 142 GALAVTNIQSF-----KEIYTS---LLNKTYIITTPDSRNINKGNSANEIA--------R 185
GA + + YT L+ + + S NI+ S +EIA R
Sbjct: 499 GAXEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTFTSR 558
Query: 186 CAIFD-----------LEILLKKNHNKXXXXXX---------EPLVQCAGGMIMYDSIYL 225
IFD L K+ + EP++ AGG D ++
Sbjct: 559 DEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGXHXVDPLFQ 618
Query: 226 KLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMT 285
+++ C N I +I DE+ G R G E PD C +K +TGG +PL++ +
Sbjct: 619 RVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGXVPLAVTLA 678
Query: 286 TDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKI---- 341
TD LH HSYS + C A ++ F I+ K +
Sbjct: 679 TDAVFDSFSGDSKLKALLHGHSYSAHAXGCATAAKAIQWFKDPETNHNITSQGKTLRELW 738
Query: 342 -TKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQ--IETFSKKFFVAALKNELLLRPIG 398
+ + + +H + G ++A ++ + ++K + ++ + RP+G
Sbjct: 739 DEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIXLREDGIFTRPLG 798
Query: 399 NTVYL 403
N +YL
Sbjct: 799 NVIYL 803
>pdb|3GJU|A Chain A, Crystal Structure Of A Putative Aminotransferase (Mll7127)
From Mesorhizobium Loti Maff303099 At 1.55 A Resolution
Length = 459
Score = 102 bits (253), Expect = 6e-22, Method: Compositional matrix adjust.
Identities = 87/406 (21%), Positives = 172/406 (42%), Gaps = 20/406 (4%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE--HVMLSNLTHKPVIKLSEKLS 87
D +G++ +DA + + G+ I A+ Q L H + + T + I L++ +
Sbjct: 47 DNNGRKSIDAFAGLYCVNVGYGRQKIADAIATQAKNLAYYHAYVGHGT-EASITLAKXII 105
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
++G G+ A E +K+ ++Y G KKK I YHG + ++T
Sbjct: 106 DRAPKGXSRVYFGLSGSDANETNIKLIWYYNNVLGRPEKKKIISRWRGYHGSGVXTGSLT 165
Query: 148 NIQSFKEIYTSLLNKTYIITTPDS---RNINKGNSANEIAR-CAIFDLEILLKKNHNKXX 203
+ F + L + ++ T R ++ S + ++ CA E +L +
Sbjct: 166 GLDLFHNAFD--LPRAPVLHTEAPYYFRRTDRSXSEEQFSQHCADKLEEXILAEGPETIA 223
Query: 204 XXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 263
EP++ GG++ + Y + ++ + Y++ L+ADE+ G GR G F +H I
Sbjct: 224 AFIGEPILGT-GGIVPPPAGYWEKIQAVLKKYDVLLVADEVVTGFGRLGTXFGSDHYGIK 282
Query: 264 PDFLCLS-KGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFL-HSHSYSGNPLACCAALAT 321
PD + ++ KG+T Y PLS V+ D L H +YS +P+ A +A
Sbjct: 283 PDLITIAXKGLTSAYAPLSGVIVADRVWQVLVQGSDKLGSLGHGWTYSAHPICVAAGVAN 342
Query: 322 LEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQI---- 376
LE+ ++ +++ + L + H + R G + A + + + +++
Sbjct: 343 LELIDEXDLVTNAGETGAYFRAELAKAVGGHKNVGEVRGDGXLAAVEFVADKDDRVFFDA 402
Query: 377 -ETFSKKFFVAALKNELLLR--PIGNTVYLMPPYILNKNEIQHMTS 419
+ + A + ++ R P G+ + PP L + + + S
Sbjct: 403 SQKIGPQVATALAASGVIGRAXPQGDILGFAPPLCLTREQADIVVS 448
>pdb|4FFC|A Chain A, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|B Chain B, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|C Chain C, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
pdb|4FFC|D Chain D, Crystal Structure Of A 4-Aminobutyrate Aminotransferase
(Gabt) From Mycobacterium Abscessus
Length = 453
Score = 98.6 bits (244), Expect = 5e-21, Method: Compositional matrix adjust.
Identities = 97/404 (24%), Positives = 171/404 (42%), Gaps = 29/404 (7%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
++D G ++D + V G S+ + A+ +Q H ++ ++++E L+
Sbjct: 58 IVDADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVTPYEQYVQVAELLN 117
Query: 88 SLT--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA 145
+LT + + S GA AVE A+K++ + + + N+YHG T +A
Sbjct: 118 ALTPGDHDKRTALFNS-GAEAVENAIKVA------RLATGRPAVVAFDNAYHGRTNLTMA 170
Query: 146 VT-NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXX 204
+T +K + + Y + G + E AR AI +E +
Sbjct: 171 LTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIETQI--GAQSLAA 228
Query: 205 XXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWP 264
EP +Q GG I+ +L + + + IADE+ G RTG +FA EH I P
Sbjct: 229 IIIEP-IQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTGAWFASEHEGIVP 287
Query: 265 DFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEI 324
D + ++ GI GG +PLS V +Y GNP+ C AA+A L +
Sbjct: 288 DIVTMAXGIAGG-MPLSAV------TGRAELMDAVYAGGLGGTYGGNPVTCAAAVAALGV 340
Query: 325 FNKDNILQRISQDMKKITKALTSLITHPKIIN-FRQKGMIWAFDVIIEDPEQIE---TFS 380
+ ++ R +T L++L II R +G + A +++ P +E +
Sbjct: 341 MRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIEIV--KPGTLEPDAALT 398
Query: 381 KKFFVAALKNELLL---RPIGNTVYLMPPYILNKNEIQHMTSAI 421
K AL +L+ GN + L+PP ++ + + +A+
Sbjct: 399 KSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITAL 442
>pdb|3DXW|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
pdb|3DXW|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam
Length = 452
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 94/414 (22%), Positives = 172/414 (41%), Gaps = 38/414 (9%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL- 86
LI+ +G+ +D +W G+ + I A+ + + ++ P + L+E+L
Sbjct: 50 LIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLL 109
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+S ++G G+ A E A + G I +YHG T+G++A
Sbjct: 110 ASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGV------IAFAGAYHGCTVGSMAF 163
Query: 147 T--NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL--EILLKKNHNKX 202
+ ++Q+ L+ Y RN G+ AI L E L
Sbjct: 164 SGHSVQADAAKADGLILLPYPDPYRPYRNDPTGD--------AILTLLTEKLAAVPAGSI 215
Query: 203 XXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 262
EP +Q GG+I+ +L+ +IC + I ++ DE+ VG R+G+ EH
Sbjct: 216 GAAFIEP-IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF 274
Query: 263 WPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATL 322
PD L L KG+ GG +++ + LH GNP++ A LA L
Sbjct: 275 VPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQT---LH-----GNPISAAAGLAVL 326
Query: 323 EIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIE----DPEQIE 377
E ++D++ + + + L+ L HP I + R +G+ +++ + +P + E
Sbjct: 327 ETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAE 386
Query: 378 TFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
T K A + L++ + GN + PP + + +I + + F+E+
Sbjct: 387 T--AKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSEL 438
>pdb|2ZUK|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|2ZUK|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae Complexed With Epsilon
Caprolactam (Different Binding Mode)
pdb|3DXV|A Chain A, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
pdb|3DXV|B Chain B, The Crystal Structure Of Alpha-Amino-Epsilon-Caprolactam
Racemase From Achromobacter Obae
Length = 439
Score = 84.7 bits (208), Expect = 9e-17, Method: Compositional matrix adjust.
Identities = 94/414 (22%), Positives = 172/414 (41%), Gaps = 38/414 (9%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL- 86
LI+ +G+ +D +W G+ + I A+ + + ++ P + L+E+L
Sbjct: 37 LIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSASNAPAVTLAERLL 96
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+S ++G G+ A E A + G I +YHG T+G++A
Sbjct: 97 ASFPGEGTHKIWFGHSGSDANEAAYRAIVKATGRSGV------IAFAGAYHGCTVGSMAF 150
Query: 147 T--NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL--EILLKKNHNKX 202
+ ++Q+ L+ Y RN G+ AI L E L
Sbjct: 151 SGHSVQADAAKADGLILLPYPDPYRPYRNDPTGD--------AILTLLTEKLAAVPAGSI 202
Query: 203 XXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEI 262
EP +Q GG+I+ +L+ +IC + I ++ DE+ VG R+G+ EH
Sbjct: 203 GAAFIEP-IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSGRLHCFEHEGF 261
Query: 263 WPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATL 322
PD L L KG+ GG +++ + LH GNP++ A LA L
Sbjct: 262 VPDILVLGKGLGGGLPLSAVIAPAEILDCASAFAMQT---LH-----GNPISAAAGLAVL 313
Query: 323 EIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIE----DPEQIE 377
E ++D++ + + + L+ L HP I + R +G+ +++ + +P + E
Sbjct: 314 ETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGMELVCDRQSREPARAE 373
Query: 378 TFSKKFFVAALKNELLLRPI---GNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
T K A + L++ + GN + PP + + +I + + F+E+
Sbjct: 374 T--AKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLDRAFSEL 425
>pdb|2GSA|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|2GSA|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
(Aminotransferase, Wild-Type Form)
pdb|4GSA|A Chain A, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|4GSA|B Chain B, Crystal Structure Of Glutamate-1-semialdehyde Aminomutase
(aminotransferase) Reduced With Cyanoborohydrate
pdb|3GSB|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
pdb|3GSB|B Chain B, Crystal Structure Of Glutamate-1-Semialdehyde Aminomutase
In Complex With Gabaculine
Length = 432
Score = 79.3 bits (194), Expect = 3e-15, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 55/355 (15%)
Query: 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK- 65
FK +V +K+++ W DV G RY+D + +W + GH++ + +ALK + K
Sbjct: 33 FKSVGGQPIVFDRVKDAYAW---DVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKG 89
Query: 66 --------LEHVMLSNLTHK-PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFH 116
LE+V+ + P I++ ++S G A L++
Sbjct: 90 TSFGAPCALENVLAEMVNDAVPSIEMVRFVNS--------------GTEACMAVLRLM-- 133
Query: 117 YWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINK 176
+ + + K I + YHG L +++ + T + P S + K
Sbjct: 134 ----RAYTGRDKIIKFEGCYHGHADMFL----VKAGSGVAT--------LGLPSSPGVPK 177
Query: 177 GNSANEIARCAIFDLE---ILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICN 233
+AN + DLE L +N + EP+V + G I+ D+ +L+ +REI
Sbjct: 178 KTTANTLT-TPYNDLEAVKALFAENPGEIAGVILEPIVGNS-GFIVPDAGFLEGLREITL 235
Query: 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXX 293
++ L+ DE+ G R E + PD L K I GG LP V
Sbjct: 236 EHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGK-IIGGGLP---VGAYGGKREIM 290
Query: 294 XXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL 348
+ + SGNPLA A + TLE+ + + + Q K+++ L ++
Sbjct: 291 QLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAI 345
>pdb|2HOY|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOY|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HOZ|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HOZ|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP1|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP1|B Chain B, Inter-Subunit Signaling In Gsam
pdb|2HP2|A Chain A, Inter-Subunit Signaling In Gsam
pdb|2HP2|B Chain B, Inter-Subunit Signaling In Gsam
Length = 432
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 55/355 (15%)
Query: 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK- 65
FK +V +K+++ W DV G RY+D + +W + GH++ + +ALK + K
Sbjct: 33 FKSVGGQPIVFDRVKDAYAW---DVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKG 89
Query: 66 --------LEHVMLSNLTHK-PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFH 116
LE+V+ + P I++ ++S G A L++
Sbjct: 90 TSFGAPCALENVLAEMVNDAVPSIEMVRFVNS--------------GTEACMAVLRIM-- 133
Query: 117 YWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINK 176
+ + + K I + YHG L +++ + T + P S + K
Sbjct: 134 ----RAYTGRDKIIKFEGCYHGHADMFL----VKAGSGVAT--------LGLPSSPGVPK 177
Query: 177 GNSANEIARCAIFDLE---ILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICN 233
+AN + DLE L +N + EP+V + G I+ D+ +L+ +REI
Sbjct: 178 KTTANTLT-TPYNDLEAVKALFAENPGEIAGVILEPIVGNS-GFIVPDAGFLEGLREITL 235
Query: 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXX 293
++ L+ DE+ G R E + PD L K I GG LP V
Sbjct: 236 EHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGK-IIGGGLP---VGAYGGKREIM 290
Query: 294 XXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL 348
+ + SGNPLA A + TLE+ + + + Q K+++ L ++
Sbjct: 291 QLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAI 345
>pdb|3FQA|A Chain A, Gabaculien Complex Of Gabaculine Resistant Gsam Version
pdb|3FQA|B Chain B, Gabaculien Complex Of Gabaculine Resistant Gsam Version
Length = 427
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 55/355 (15%)
Query: 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK- 65
FK +V +K+++ W DV G RY+D + +W + GH++ + +ALK + K
Sbjct: 28 FKSVGGQPIVFDRVKDAYAW---DVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKG 84
Query: 66 --------LEHVMLSNLTHK-PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFH 116
LE+V+ + P I++ ++S G A L++
Sbjct: 85 TSFGAPCALENVLAEMVNDAVPSIEMVRFVNS--------------GTEACMAVLRLM-- 128
Query: 117 YWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINK 176
+ + + K I + YHG L +++ + T + P S + K
Sbjct: 129 ----RAYTGRDKIIKFEGCYHGHADMFL----VKAGSGVAT--------LGLPSSPGVPK 172
Query: 177 GNSANEIARCAIFDLE---ILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICN 233
+AN + DLE L +N + EP+V + G I+ D+ +L+ +REI
Sbjct: 173 KTTANTLT-TPYNDLEAVKALFAENPGEIAGVILEPIVGNS-GFIVPDAGFLEGLREITL 230
Query: 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXX 293
++ L+ DE+ G R E + PD L K I GG LP V
Sbjct: 231 EHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGK-IIGGGLP---VGAYGGKREIM 285
Query: 294 XXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL 348
+ + SGNPLA A + TLE+ + + + Q K+++ L ++
Sbjct: 286 QLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAI 340
>pdb|3FQ7|A Chain A, Gabaculine Complex Of Gsam
pdb|3FQ7|B Chain B, Gabaculine Complex Of Gsam
pdb|3USF|A Chain A, Crystal Structure Of Dava-4
pdb|3USF|B Chain B, Crystal Structure Of Dava-4
Length = 427
Score = 79.0 bits (193), Expect = 5e-15, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 55/355 (15%)
Query: 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK- 65
FK +V +K+++ W DV G RY+D + +W + GH++ + +ALK + K
Sbjct: 28 FKSVGGQPIVFDRVKDAYAW---DVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKG 84
Query: 66 --------LEHVMLSNLTHK-PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFH 116
LE+V+ + P I++ ++S G A L++
Sbjct: 85 TSFGAPCALENVLAEMVNDAVPSIEMVRFVNS--------------GTEACMAVLRIM-- 128
Query: 117 YWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINK 176
+ + + K I + YHG L +++ + T + P S + K
Sbjct: 129 ----RAYTGRDKIIKFEGCYHGHADMFL----VKAGSGVAT--------LGLPSSPGVPK 172
Query: 177 GNSANEIARCAIFDLE---ILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICN 233
+AN + DLE L +N + EP+V + G I+ D+ +L+ +REI
Sbjct: 173 KTTANTLT-TPYNDLEAVKALFAENPGEIAGVILEPIVGNS-GFIVPDAGFLEGLREITL 230
Query: 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXX 293
++ L+ DE+ G R E + PD L K I GG LP V
Sbjct: 231 EHDALLVFDEVMTGF-RIAYGGVQEKFGVTPDLTTLGK-IIGGGLP---VGAYGGKREIM 285
Query: 294 XXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL 348
+ + SGNPLA A + TLE+ + + + Q K+++ L ++
Sbjct: 286 QLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAI 340
>pdb|3FQ8|A Chain A, M248i Mutant Of Gsam
pdb|3FQ8|B Chain B, M248i Mutant Of Gsam
Length = 427
Score = 78.6 bits (192), Expect = 6e-15, Method: Compositional matrix adjust.
Identities = 83/355 (23%), Positives = 144/355 (40%), Gaps = 55/355 (15%)
Query: 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK- 65
FK +V +K+++ W DV G RY+D + +W + GH++ + +ALK + K
Sbjct: 28 FKSVGGQPIVFDRVKDAYAW---DVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEKG 84
Query: 66 --------LEHVMLSNLTHK-PVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFH 116
LE+V+ + P I++ ++S G A L++
Sbjct: 85 TSFGAPCALENVLAEMVNDAVPSIEMVRFVNS--------------GTEACMAVLRIM-- 128
Query: 117 YWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINK 176
+ + + K I + YHG L +++ + T + P S + K
Sbjct: 129 ----RAYTGRDKIIKFEGCYHGHADMFL----VKAGSGVAT--------LGLPSSPGVPK 172
Query: 177 GNSANEIARCAIFDLE---ILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICN 233
+AN + DLE L +N + EP+V + G I+ D+ +L+ +REI
Sbjct: 173 KTTANTLT-TPYNDLEAVKALFAENPGEIAGVILEPIVGNS-GFIVPDAGFLEGLREITL 230
Query: 234 NYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXX 293
++ L+ DE+ G R E + PD L K I GG LP V
Sbjct: 231 EHDALLVFDEVITGF-RIAYGGVQEKFGVTPDLTTLGK-IIGGGLP---VGAYGGKREIM 285
Query: 294 XXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL 348
+ + SGNPLA A + TLE+ + + + Q K+++ L ++
Sbjct: 286 QLVAPAGPMYQAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAI 340
>pdb|2CFB|A Chain A, Glutamate-1-Semialdehyde 2,1-Aminomutase From
Thermosynechococcus Elongatus
Length = 411
Score = 73.2 bits (178), Expect = 3e-13, Method: Compositional matrix adjust.
Identities = 81/346 (23%), Positives = 134/346 (38%), Gaps = 43/346 (12%)
Query: 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL 66
FK +V +K + W DV G +Y+D + SW + GH++ + AL L K
Sbjct: 12 FKSVGGQPIVFDHVKGAHIW---DVDGNQYIDYVGSWGPAIVGHAHPEVIDALHAALEKG 68
Query: 67 EHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKG 122
+L N+ + VI + + + + G A L++ +
Sbjct: 69 TSFGAPCLLENILAEMVIAAVPSVEMVR--------FVNSGTEACMAVLRLM------RA 114
Query: 123 FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANE 182
+ ++K I + YHG L +++ + T + PDS + K +
Sbjct: 115 YTQREKVIKFEGCYHGHADMFL----VKAGSGVAT--------LGLPDSPGVPK-ATTAA 161
Query: 183 IARCAIFDLEI---LLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHL 239
DLE L ++ N EP+V A G I D+ +L+ +RE+ Y L
Sbjct: 162 TLTAPYNDLEAVSRLFEQYPNDIAGVILEPVVGNA-GFIPPDAGFLEGLRELTKQYGALL 220
Query: 240 IADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXX 299
+ DE+ G R A E + PD L K + GG LP V
Sbjct: 221 VFDEVMTGF-RIAYGGAQEKFGVTPDLTTLGK-VIGGGLP---VGAYGGRAEIMKMVAPA 275
Query: 300 XXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL 345
+ + SGNPLA A + TLEI ++ + + + K+ + L
Sbjct: 276 GPVYQAGTLSGNPLAMTAGIKTLEILSRPGSYEHLDRITGKLVQGL 321
>pdb|4ATP|A Chain A, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|B Chain B, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|C Chain C, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|D Chain D, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|E Chain E, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|F Chain F, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|G Chain G, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|H Chain H, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|I Chain I, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|J Chain J, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|K Chain K, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATP|L Chain L, Structure Of Gaba-Transaminase A1r958 From Arthrobacter
Aurescens In Complex With Plp
pdb|4ATQ|A Chain A, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|B Chain B, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|C Chain C, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|D Chain D, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|E Chain E, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|F Chain F, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|G Chain G, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|H Chain H, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|I Chain I, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|J Chain J, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|K Chain K, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
pdb|4ATQ|L Chain L, Gaba-Transaminase A1r958 In Complex With External Aldimine
Plp-Gaba Adduct
Length = 456
Score = 72.0 bits (175), Expect = 6e-13, Method: Compositional matrix adjust.
Identities = 70/260 (26%), Positives = 118/260 (45%), Gaps = 19/260 (7%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89
DV G ++D S V G S+ + A++ H ++ + ++E+L+ L
Sbjct: 60 DVDGNSFIDLGSGIAVTSVGASDPAVVAAVQEAAAHFTHTCFMVTPYEGYVAVTEQLNRL 119
Query: 90 T--QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
T + + S GA AVE A+K++ + + + ++YHG T +A+T
Sbjct: 120 TPGDHAKRTVLFNS-GAEAVENAVKVA------RLATGRDAVVAFDHAYHGRTNLTMALT 172
Query: 148 -NIQSFKEIYTSLLNKTYIITTPDS---RNINKGNSANEIARCAIFDLEILLKKNHNKXX 203
+K + + Y + P S R N + E A+ AI +E + ++
Sbjct: 173 AKAMPYKTNFGPFAPEVYRM--PMSYPFREENPEITGAEAAKRAITMIEKQI--GGDQVA 228
Query: 204 XXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 263
EP +Q GG I+ +L + E I IADE+ G RTG++FA +H +
Sbjct: 229 AIIIEP-IQGEGGFIVPAEGFLPALSEWAKEKGIVFIADEVQSGFCRTGEWFAVDHEGVV 287
Query: 264 PDFLCLSKGITGGYLPLSLV 283
PD + ++KGI GG LPLS +
Sbjct: 288 PDIITMAKGIAGG-LPLSAI 306
>pdb|2JJH|A Chain A, E243 Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 71.2 bits (173), Expect = 1e-12, Method: Compositional matrix adjust.
Identities = 93/430 (21%), Positives = 175/430 (40%), Gaps = 47/430 (10%)
Query: 16 VIRSLKNSWKWSLID-VSGKRYLDAISSWWVNLFG-------HSNSYINKALKNQLNKLE 67
++ L S L+D ++G+RYLD + + G + + ++ LNK
Sbjct: 35 IVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPS 94
Query: 68 HVMLSNLTHKPVIKLSEKLSS-LTQYKLGHCFYGSDGASAVEVALKMSFHY--WYNKGF- 123
+ S++ + + E + L L H F+ GA AVE ALK +F + +N+
Sbjct: 95 N---SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHG 151
Query: 124 ---LNKKKFICLQNSYHGETLGALAVTNIQS-----FKEIYTSLLNKTYIITTPDSRNIN 175
+ + L+ ++HG + L++TN + F + ++ Y+ D +
Sbjct: 152 IDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMA 211
Query: 176 KGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNY 235
+ A F+ + H+ EP +Q AGG + + +RE+C+ +
Sbjct: 212 ALEAEALRQARAAFE-----TRPHD-IACFVAEP-IQGAGGDRHFRPEFFAAMRELCDEF 264
Query: 236 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXX 295
+ LI DE+ GCG TG +A + ++ PD + K + VM
Sbjct: 265 DALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADN 319
Query: 296 XXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH-PKI 354
L+S ++ GN A LE+ + + +R Q K + L L P +
Sbjct: 320 VFAVPSRLNS-TWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAV 378
Query: 355 I-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-NTVYLMPPYILNK 411
+ + R +G++ AF + T + + L + +++ P G +TV PP ++
Sbjct: 379 VLDPRGRGLMCAFSLPT-------TADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVST 431
Query: 412 NEIQHMTSAI 421
EI +A+
Sbjct: 432 AEIDAAIAAV 441
>pdb|2JJE|A Chain A, Crystal Structure Of T330s Mutant Of Rv3290c From M.
Tuberculosis
Length = 449
Score = 70.5 bits (171), Expect = 2e-12, Method: Compositional matrix adjust.
Identities = 93/430 (21%), Positives = 174/430 (40%), Gaps = 47/430 (10%)
Query: 16 VIRSLKNSWKWSLID-VSGKRYLDAISSWWVNLFG-------HSNSYINKALKNQLNKLE 67
++ L S L+D ++G+RYLD + + G + + ++ LNK
Sbjct: 35 IVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPS 94
Query: 68 HVMLSNLTHKPVIKLSEKLSS-LTQYKLGHCFYGSDGASAVEVALKMSFHY--WYNKGF- 123
+ S++ + + E + L L H F+ GA AVE ALK +F + +N+
Sbjct: 95 N---SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHG 151
Query: 124 ---LNKKKFICLQNSYHGETLGALAVTNIQS-----FKEIYTSLLNKTYIITTPDSRNIN 175
+ + L+ ++HG + L++TN + F + ++ Y+ D +
Sbjct: 152 IDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMA 211
Query: 176 KGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNY 235
+ A F+ + H+ EP +Q GG + + +RE+C+ +
Sbjct: 212 ALEAEALRQARAAFE-----TRPHD-IACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEF 264
Query: 236 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXX 295
+ LI DE+ GCG TG +A + ++ PD + K + VM
Sbjct: 265 DALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADN 319
Query: 296 XXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH-PKI 354
L+S S+ GN A LE+ + + +R Q K + L L P +
Sbjct: 320 VFAVPSRLNS-SWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAV 378
Query: 355 I-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-NTVYLMPPYILNK 411
+ + R +G++ AF + T + + L + +++ P G +TV PP ++
Sbjct: 379 VLDPRGRGLMCAFSLPT-------TADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVST 431
Query: 412 NEIQHMTSAI 421
EI +A+
Sbjct: 432 AEIDAAIAAV 441
>pdb|2CIN|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form
pdb|2CJG|A Chain A, Lysine Aminotransferase From M. Tuberculosis In Bound Pmp
Form
pdb|2CJH|A Chain A, Lysine Aminotransferase From M. Tuberculosis In The
Internal Aldimine Form With Bound Substrate 2-
Ketoglutarate
pdb|2JJG|A Chain A, Crystal Structure Of The M. Tuberculosis Lysine-Epsilon
Aminotransferase (Rv3290c) Complexed To An Inhibitor
pdb|2CJD|A Chain A, Lysine Aminotransferase From M. Tuberculosis In External
Aldimine Form
Length = 449
Score = 69.3 bits (168), Expect = 4e-12, Method: Compositional matrix adjust.
Identities = 92/430 (21%), Positives = 174/430 (40%), Gaps = 47/430 (10%)
Query: 16 VIRSLKNSWKWSLID-VSGKRYLDAISSWWVNLFG-------HSNSYINKALKNQLNKLE 67
++ L S L+D ++G+RYLD + + G + + ++ LNK
Sbjct: 35 IVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPS 94
Query: 68 HVMLSNLTHKPVIKLSEKLSS-LTQYKLGHCFYGSDGASAVEVALKMSFHY--WYNKGF- 123
+ S++ + + E + L L H F+ GA AVE ALK +F + +N+
Sbjct: 95 N---SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHG 151
Query: 124 ---LNKKKFICLQNSYHGETLGALAVTNIQS-----FKEIYTSLLNKTYIITTPDSRNIN 175
+ + L+ ++HG + L++TN + F + ++ Y+ D +
Sbjct: 152 IDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMA 211
Query: 176 KGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNY 235
+ A F+ + H+ EP +Q GG + + +RE+C+ +
Sbjct: 212 ALEAEALRQARAAFE-----TRPHD-IACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEF 264
Query: 236 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXX 295
+ LI DE+ GCG TG +A + ++ PD + K + VM
Sbjct: 265 DALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADN 319
Query: 296 XXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH-PKI 354
L+S ++ GN A LE+ + + +R Q K + L L P +
Sbjct: 320 VFAVPSRLNS-TWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAV 378
Query: 355 I-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-NTVYLMPPYILNK 411
+ + R +G++ AF + T + + L + +++ P G +TV PP ++
Sbjct: 379 VLDPRGRGLMCAFSLPT-------TADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVST 431
Query: 412 NEIQHMTSAI 421
EI +A+
Sbjct: 432 AEIDAAIAAV 441
>pdb|2JJF|A Chain A, N328a Mutant Of M. Tuberculosis Rv3290c
Length = 449
Score = 68.9 bits (167), Expect = 6e-12, Method: Compositional matrix adjust.
Identities = 92/430 (21%), Positives = 173/430 (40%), Gaps = 47/430 (10%)
Query: 16 VIRSLKNSWKWSLID-VSGKRYLDAISSWWVNLFG-------HSNSYINKALKNQLNKLE 67
++ L S L+D ++G+RYLD + + G + + ++ LNK
Sbjct: 35 IVLDLTRSGGSYLVDAITGRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPS 94
Query: 68 HVMLSNLTHKPVIKLSEKLSS-LTQYKLGHCFYGSDGASAVEVALKMSFHY--WYNKGF- 123
+ S++ + + E + L L H F+ GA AVE ALK +F + +N+
Sbjct: 95 N---SDVYSVAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHG 151
Query: 124 ---LNKKKFICLQNSYHGETLGALAVTNIQS-----FKEIYTSLLNKTYIITTPDSRNIN 175
+ + L+ ++HG + L++TN + F + ++ Y+ D +
Sbjct: 152 IDPALGTQVLHLRGAFHGRSGYTLSLTNTKPTITARFPKFDWPRIDAPYMRPGLDEPAMA 211
Query: 176 KGNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNY 235
+ A F+ + H+ EP +Q GG + + +RE+C+ +
Sbjct: 212 ALEAEALRQARAAFE-----TRPHD-IACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEF 264
Query: 236 NIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXX 295
+ LI DE+ GCG TG +A + ++ PD + K + VM
Sbjct: 265 DALLIFDEVQTGCGLTGTAWAYQQLDVAPDIVAFGKKTQ-----VCGVMAGRRVDEVADN 319
Query: 296 XXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITH-PKI 354
L S ++ GN A LE+ + + +R Q K + L L P +
Sbjct: 320 VFAVPSRLAS-TWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAV 378
Query: 355 I-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAAL-KNELLLRPIG-NTVYLMPPYILNK 411
+ + R +G++ AF + T + + L + +++ P G +TV PP ++
Sbjct: 379 VLDPRGRGLMCAFSLPT-------TADRDELIRQLWQRAVIVLPAGADTVRFRPPLTVST 431
Query: 412 NEIQHMTSAI 421
EI +A+
Sbjct: 432 AEIDAAIAAV 441
>pdb|2E7U|A Chain A, Crystal Structure Of Glutamate-1-Semialdehyde
2,1-Aminomutase From Thermus Thermophilus Hb8
Length = 424
Score = 67.0 bits (162), Expect = 2e-11, Method: Compositional matrix adjust.
Identities = 79/355 (22%), Positives = 135/355 (38%), Gaps = 58/355 (16%)
Query: 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL 66
FK + + ++ W D G RYLD + SW + GH++ K L L
Sbjct: 28 FKAVGGTPPFLVRGEGAYVW---DADGNRYLDYVMSWGPLILGHAHP---KVLARVRETL 81
Query: 67 EHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNK 126
E + + L++K+ + + + + G A AL+++ +G+ +
Sbjct: 82 ERGLTFGAPSPLEVALAKKVKRAYPF-VDLVRFVNSGTEATMSALRLA------RGYTGR 134
Query: 127 KKFICLQNSYHGETLG----------ALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINK 176
+ + +YHG G L V + E Y L T ++ D + +
Sbjct: 135 PYIVKFRGNYHGHADGLLVEAGSGALTLGVPSSAGVPEEYAKL---TLVLEYNDPEGLRE 191
Query: 177 GNSANEIARCAIFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYN 236
+LK+ + EP+V AG ++ + +LK + E Y
Sbjct: 192 -----------------VLKRRGEEIAAIIFEPVVGNAGVLVPTED-FLKALHE-AKAYG 232
Query: 237 IHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXX 296
+ LIADE+ G R A E + PD + L K I GG LP +
Sbjct: 233 VLLIADEVMTGF-RLAFGGATELLGLKPDLVTLGK-ILGGGLPAA---AYAGRREIMEKV 287
Query: 297 XXXXXFLHSHSYSGNPLACCAALATLEIFNK--------DNILQRISQDMKKITK 343
+ + SGNPLA A LATLE+ + +++ R+ +K++ K
Sbjct: 288 APLGPVYQAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLK 342
>pdb|3BS8|A Chain A, Crystal Structure Of Glutamate 1-Semialdehyde
Aminotransferase Complexed With
Pyridoxamine-5'-Phosphate From Bacillus Subtilis
Length = 438
Score = 63.2 bits (152), Expect = 3e-10, Method: Compositional matrix adjust.
Identities = 75/324 (23%), Positives = 129/324 (39%), Gaps = 37/324 (11%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLS-EKL 86
+ D+ G Y+D + SW + GH+N + ++LK + KL +++
Sbjct: 55 IFDIDGNEYIDYVLSWGPLILGHTNDRVVESLKKVAEYGTSFGAPTEVENELAKLVIDRV 114
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
S+ ++ S G A AL+++ +G+ + K + + YHG L
Sbjct: 115 PSVEIVRM-----VSSGTEATMSALRLA------RGYTGRNKILKFEGCYHGHGDSLL-- 161
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE---ILLKKNHNKXX 203
I++ + T + PDS + +G + N I DLE + ++
Sbjct: 162 --IKAGSGVAT--------LGLPDSPGVPEGIAKNTIT-VPYNDLESVKLAFQQFGEDIA 210
Query: 204 XXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW 263
EP+ G++ +L+ +R+I Y LI DE+ G R A + +
Sbjct: 211 GVIVEPVAGNM-GVVPPQEGFLQGLRDITEQYGSLLIFDEVMTGF-RVDYNCAQGYFGVT 268
Query: 264 PDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLE 323
PD CL K + GG LP V + + SGNPLA A L TL+
Sbjct: 269 PDLTCLGK-VIGGGLP---VGAYGGKAEIMEQIAPSGPIYQAGTLSGNPLAMTAGLETLK 324
Query: 324 IFNKD---NILQRISQDMKKITKA 344
D N +++ + + I+KA
Sbjct: 325 QLTPDSYKNFIKKGDRLEEGISKA 348
>pdb|1OHV|A Chain A, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|B Chain B, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|C Chain C, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHV|D Chain D, 4-aminobutyrate-aminotransferase From Pig
pdb|1OHW|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHW|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Vinyl Gaba
pdb|1OHY|A Chain A, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|B Chain B, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|C Chain C, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
pdb|1OHY|D Chain D, 4-Aminobutyrate-Aminotransferase Inactivated By
Gamma-Ethynyl Gaba
Length = 472
Score = 60.8 bits (146), Expect = 1e-09, Method: Compositional matrix adjust.
Identities = 96/434 (22%), Positives = 162/434 (37%), Gaps = 65/434 (14%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP----VIKLS 83
L+DV G R LD S G+S+ + K ++ N + L P V KL
Sbjct: 57 LVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPENFVEKLR 116
Query: 84 EKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNK-----GFLNKKKFICLQN---- 134
E L S+ + + G+ + E A K F ++ +K F ++ C+ N
Sbjct: 117 ESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETCMINQAPG 176
Query: 135 -----------SYHGETLGALAVT--------NIQSFKEIYTSLLNKTYIITTPDSRNIN 175
++HG T+G LA T +I SF Y +
Sbjct: 177 CPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRLKYPL-----EEFV 231
Query: 176 KGNSANEIARC--AIFDLEILLKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICN 233
K N E ARC + DL + +K EP +Q GG + + +R+I
Sbjct: 232 KENQQEE-ARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFRKLRDISR 289
Query: 234 NYNIHLIADEIAVGCGRTGKFFACEH--AEIWPDFLCLSKG-ITGGYLPLSLVMTTDXXX 290
+ + DE+ G G TGKF+A EH + D + SK +TGG+
Sbjct: 290 KHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFF------------ 337
Query: 291 XXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL-I 349
+ +++ G+P + I ++++L + K + L L
Sbjct: 338 -HKEEFRPNAPYRIFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDLQA 396
Query: 350 THPKIIN-FRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYI 408
+P+ I+ R +G +FD P+ E+ K A ++L G+ P +
Sbjct: 397 RYPQFISRVRGRGTFCSFDT----PD--ESIRNKLISIARNKGVMLGGCGDKSIRFRPTL 450
Query: 409 LNKNEIQHMTSAIF 422
+ ++ H+ IF
Sbjct: 451 VFRDHHAHLFLNIF 464
>pdb|3K28|A Chain A, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|B Chain B, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|C Chain C, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
pdb|3K28|D Chain D, Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Bacillus Anthracis With Bound
Pyridoxal 5'phosphate
Length = 429
Score = 58.5 bits (140), Expect = 7e-09, Method: Compositional matrix adjust.
Identities = 78/326 (23%), Positives = 124/326 (38%), Gaps = 49/326 (15%)
Query: 7 FKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL 66
FK N L K S + D+ G Y+D + SW + GH+N + +ALK +
Sbjct: 29 FKSVGXNPLFXERGKGSKVY---DIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAERG 85
Query: 67 EHVMLSNLTHKPVIKLS-EKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN 125
+ KL E++ S+ + + G A AL+++ +G+
Sbjct: 86 TSFGAPTEIENKLAKLVIERVPSIEIVRXVNS-----GTEATXSALRLA------RGYTG 134
Query: 126 KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIAR 185
+ K + YHG L I++ + T + PDS + +G + N I
Sbjct: 135 RNKILKFIGCYHGHGDSLL----IKAGSGVAT--------LGLPDSPGVPEGVAKNTIT- 181
Query: 186 CAIFDLEIL---LKKNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD 242
A DLE + ++ + EP V G++ +L+ +RE+ LI D
Sbjct: 182 VAYNDLESVKYAFEQFGDDIACVIVEP-VAGNXGVVPPQPGFLEGLREVTEQNGALLIFD 240
Query: 243 EIAVG------CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXX 296
E+ G CG+ + + PD CL K + GG LP V
Sbjct: 241 EVXTGFRVAYNCGQG-------YYGVTPDLTCLGK-VIGGGLP---VGAYGGKAEIXRQV 289
Query: 297 XXXXXFLHSHSYSGNPLACCAALATL 322
+ + SGNPLA A TL
Sbjct: 290 APSGPIYQAGTLSGNPLAXAAGYETL 315
>pdb|4E77|A Chain A, 2.0a Crystal Structure Of A Glutamate-1-Semialdehyde
Aminotransferase From Yersinia Pestis Co92
Length = 429
Score = 55.8 bits (133), Expect = 5e-08, Method: Compositional matrix adjust.
Identities = 73/334 (21%), Positives = 130/334 (38%), Gaps = 50/334 (14%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
L DV GK Y+D + SW + GH++ I +A+ + +E + + +K ++ ++
Sbjct: 47 LFDVDGKAYIDYVGSWGPXILGHNHPAIRQAV---IEAVERGLSFGAPTEXEVKXAQLVT 103
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGET------- 140
L + G A A++++ +G+ + K I + YHG
Sbjct: 104 DLVP-TXDXVRXVNSGTEATXSAIRLA------RGYTGRDKIIKFEGCYHGHADCLLVKA 156
Query: 141 -LGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKG--NSANEIARCAIFDLEILLKK 197
GAL + S + T T T D ++ + E+A C I + +
Sbjct: 157 GSGALTLGQPNS-PGVPTDFAKHTLTCTYNDLASVRQAFEQYPQEVA-CIIVE---PVAG 211
Query: 198 NHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 257
N N PL + +L +R +C+ + LI DE+ G R A
Sbjct: 212 NXN-----CIPPLPE-----------FLPGLRALCDEFGALLIIDEVXTGF-RVALAGAQ 254
Query: 258 EHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCA 317
++ + PD CL K I GG P V + + SGNP+A A
Sbjct: 255 DYYHVIPDLTCLGK-IIGGGXP---VGAFGGRREVXNALAPTGPVYQAGTLSGNPIAXAA 310
Query: 318 ALATLEIFNKDNILQRISQDMKKITKALTSLITH 351
A L ++ + + +++ +T +L + + H
Sbjct: 311 GFACLTEISQVGVYETLTE----LTDSLATGLRH 340
>pdb|3L44|A Chain A, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
pdb|3L44|B Chain B, Crystal Structure Of Bacillus Anthracis Heml-1, Glutamate
Semialdehyde Aminotransferase
Length = 434
Score = 46.2 bits (108), Expect = 3e-05, Method: Compositional matrix adjust.
Identities = 61/320 (19%), Positives = 130/320 (40%), Gaps = 37/320 (11%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQL-NKLEHVMLSNLTHKPV 79
K ++ W DV G +Y+D ++++ + GH++ +I KA+ N + + + L K
Sbjct: 45 KGAYFW---DVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAENGVLYGTPTALEVKFA 101
Query: 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
L E +L + + + + G AV ++++ + + + K YHG
Sbjct: 102 KXLKEAXPALDKVR-----FVNSGTEAVXTTIRVA------RAYTGRTKIXKFAGCYHGH 150
Query: 140 TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL---LK 196
+ + + + + TPDS + + + A E+ ++E L L
Sbjct: 151 S------------DLVLVAAGSGPSTLGTPDSAGVPQ-SIAQEVITVPFNNVETLKEALD 197
Query: 197 KNHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 256
K ++ EP+V G++ +L+ V E+ + +I DE+ + R A
Sbjct: 198 KWGHEVAAILVEPIVGNF-GIVEPKPGFLEKVNELVHEAGALVIYDEV-ITAFRFXYGGA 255
Query: 257 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACC 316
+ + PD L + GG LP+ + + +GNP +
Sbjct: 256 QDLLGVTPDLTALGX-VIGGGLPIG---AYGGKKEIXEQVAPLGPAYQAGTXAGNPASXA 311
Query: 317 AALATLEIFNKDNILQRISQ 336
+ +A LE+ ++ + +++ +
Sbjct: 312 SGIACLEVLQQEGLYEKLDE 331
>pdb|4AO9|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AO9|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|A Chain A, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
pdb|4AOA|B Chain B, Biochemical Properties And Crystal Structure Of A Novel
Beta-phenylalanine Aminotransferase From Variovorax
Paradoxus
Length = 454
Score = 44.3 bits (103), Expect = 1e-04, Method: Compositional matrix adjust.
Identities = 57/259 (22%), Positives = 93/259 (35%), Gaps = 39/259 (15%)
Query: 19 SLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP 78
++ +L D G RY D I+ + ++GHS I A+ + ++ NL
Sbjct: 72 TIARGEGAALWDADGHRYADFIAEYTAGVYGHSAPEIRDAVIEAMQGGINLTGHNLLEGR 131
Query: 79 VIKL-SEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYH 137
+ +L E+ + Q + + + G A +AL + H F ++K + YH
Sbjct: 132 LARLICERFPQIEQLR-----FTNSGTEANLMALTAALH------FTGRRKIVVFSGGYH 180
Query: 138 GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK 197
G LG A + T P + N A + AR I ++
Sbjct: 181 GGVLGFGA----------------RPSPTTVPFDFLVLPYNDA-QTARAQI-------ER 216
Query: 198 NHNKXXXXXXEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFAC 257
+ + EP+ Q A G I +L+ +RE L+ DE+ R
Sbjct: 217 HGPEIAVVLVEPM-QGASGCIPGQPDFLQALRESATQVGALLVFDEVM--TSRLAPHGLA 273
Query: 258 EHAEIWPDFLCLSKGITGG 276
I D L K I GG
Sbjct: 274 NKLGIRSDLTTLGKYIGGG 292
>pdb|2CY8|A Chain A, Crystal Structure Of D-Phenylglycine Aminotransferase
(D-Phgat) From Pseudomonas Strutzeri St-201
Length = 453
Score = 39.7 bits (91), Expect = 0.003, Method: Compositional matrix adjust.
Identities = 72/338 (21%), Positives = 129/338 (38%), Gaps = 41/338 (12%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSL 89
DV G YLD + GH + +N A+ L+ H + +H ++ +E++ +
Sbjct: 53 DVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALS---HGVQYAASHPLEVRWAERIVAA 109
Query: 90 TQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNI 149
F GS G +AL+++ + F ++ + + YHG + + N
Sbjct: 110 FPSIRKLRFTGS-GTETTLLALRVA------RAFTGRRMILRFEGHYHGWHDFSASGYNS 162
Query: 150 QSFKEIYTSLLNKTY---IITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXX 206
+ +L +T ++ PD + AN + A F
Sbjct: 163 HFDGQPAPGVLPETTANTLLIRPDDIEGMREVFANHGSDIAAF----------------I 206
Query: 207 XEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
EP+ G + DS +L+ E+ Y I DE+ G R G ++ PD
Sbjct: 207 AEPVGSHFGVTPVSDS-FLREGAELARQYGALFILDEVISGF-RVGNHGMQALLDVQPDL 264
Query: 267 LCLSKGITGGYLPLSLVMTTDXXXXXXXXXXXXXXFLHSHSYSGNPLACCAALATLEIFN 326
CL+K GG L D LH +++GNP+ AA+A ++
Sbjct: 265 TCLAKASAGGLPGGILGGREDVMGVLSRGSDRK--VLHQGTFTGNPITAAAAIAAIDTIL 322
Query: 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIW 364
+D++ +I+ + +A+ L F +KG+ W
Sbjct: 323 EDDVCAKINDLGQFAREAMNHL--------FARKGLNW 352
>pdb|3UO3|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
pdb|3UO3|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae, 5-182
Clone
Length = 181
Score = 31.6 bits (70), Expect = 0.90, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 68 HVMLSNLTHKPVIKLSEKLSSLT----QYKLGHCFYGSDGASAVEVALKMSFHYWYN 120
H LS + + +KL EK + + +LG C+ D A+AV++ +++ YWYN
Sbjct: 111 HDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELK--YWYN 165
>pdb|3UO2|A Chain A, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
pdb|3UO2|B Chain B, Jac1 Co-Chaperone From Saccharomyces Cerevisiae
Length = 175
Score = 31.6 bits (70), Expect = 0.98, Method: Compositional matrix adjust.
Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 6/57 (10%)
Query: 68 HVMLSNLTHKPVIKLSEKLSSLT----QYKLGHCFYGSDGASAVEVALKMSFHYWYN 120
H LS + + +KL EK + + +LG C+ D A+AV++ +++ YWYN
Sbjct: 103 HDELSQMDDEAGVKLLEKQNKERIQDIEAQLGQCYNDKDYAAAVKLTVELK--YWYN 157
>pdb|2YKU|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKU|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKV|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKX|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|2YKY|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|A Chain A, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|B Chain B, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
pdb|4AO4|C Chain C, Structural Determinants Of The Beta-Selectivity Of A
Bacterial Aminotransferase
Length = 465
Score = 30.4 bits (67), Expect = 2.0, Method: Compositional matrix adjust.
Identities = 56/250 (22%), Positives = 91/250 (36%), Gaps = 43/250 (17%)
Query: 30 DVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVI---KLSEKL 86
DV G Y++ + + LFGHS+ I A++ L + LS T + + ++
Sbjct: 96 DVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV--GLNLSTQTENEALFAEAVCDRF 153
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
S+ + + + G A +AL + +K + YHG L
Sbjct: 154 PSIDLVR-----FTNSGTEANLMALATA------TAITGRKTVLAFDGGYHGGLL----- 197
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKXXXXX 206
N S + N Y + N++ A LLK++ +
Sbjct: 198 -NFASGH----APTNAPYHVVL---------GVYNDVEGTA-----DLLKRHGHDCAAIL 238
Query: 207 XEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
EP++ AGG + + +L L+R + LI DE+ R A E I D
Sbjct: 239 VEPML-GAGGCVPAERAFLDLLRAEASRCGALLIFDEVMT--SRLSGGGAQEMLGISADL 295
Query: 267 LCLSKGITGG 276
L K I GG
Sbjct: 296 TTLGKYIGGG 305
>pdb|1WR8|A Chain A, Crystal Structure Of Hypothetical Protein Ph1421 From
Pyrococcus Horikoshii.
pdb|1WR8|B Chain B, Crystal Structure Of Hypothetical Protein Ph1421 From
Pyrococcus Horikoshii
Length = 231
Score = 29.3 bits (64), Expect = 4.6, Method: Compositional matrix adjust.
Identities = 13/30 (43%), Positives = 22/30 (73%)
Query: 212 QCAGGMIMYDSIYLKLVREICNNYNIHLIA 241
+ AG +IM ++I ++ VREI N N++L+A
Sbjct: 109 RRAGLVIMRETINVETVREIINELNLNLVA 138
>pdb|1YLE|A Chain A, The Structure Of ArginineORNITHINE SUCCINYLTRANSFERASE
SUBUNIT AI From Pseudomonas Aeruginosa
Length = 342
Score = 28.9 bits (63), Expect = 5.4, Method: Compositional matrix adjust.
Identities = 12/37 (32%), Positives = 20/37 (54%)
Query: 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYI 165
F L++S GE +G A+ F E + S N+T++
Sbjct: 62 FFVLEDSASGELVGCSAIVASAGFSEPFYSFRNETFV 98
>pdb|1WOV|A Chain A, Crystal Strucure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme
pdb|1WOV|B Chain B, Crystal Strucure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme
pdb|1WOW|A Chain A, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 Complexed With Heme In Ferrous Form
pdb|1WOW|B Chain B, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 Complexed With Heme In Ferrous Form
pdb|1WOX|A Chain A, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme And No
pdb|1WOX|B Chain B, Crystal Structure Of Heme Oxygenase-2 From Synechocystis
Sp. Pcc 6803 In Complex With Heme And No
Length = 250
Score = 28.1 bits (61), Expect = 9.4, Method: Compositional matrix adjust.
Identities = 16/47 (34%), Positives = 25/47 (53%)
Query: 150 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLK 196
+ FKEIY +LN + +R + + N A + R + DLE L+K
Sbjct: 168 RQFKEIYRDVLNSLPLDEATINRIVEEANYAFSLNREVMHDLEDLIK 214
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.322 0.136 0.411
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,001,187
Number of Sequences: 62578
Number of extensions: 455456
Number of successful extensions: 1229
Number of sequences better than 100.0: 86
Number of HSP's better than 100.0 without gapping: 77
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 967
Number of HSP's gapped (non-prelim): 104
length of query: 430
length of database: 14,973,337
effective HSP length: 102
effective length of query: 328
effective length of database: 8,590,381
effective search space: 2817644968
effective search space used: 2817644968
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 53 (25.0 bits)