RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14484
(430 letters)
>1s0a_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase; fold
type I, subclass II, homodimer; HET: LLP; 1.71A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1qj5_A* 1mlz_A*
1qj3_A* 1mly_A* 1s06_A* 1s08_A* 1s09_A* 1s07_A* 1mgv_A*
1dty_A*
Length = 429
Score = 575 bits (1484), Expect = 0.0
Identities = 142/415 (34%), Positives = 221/415 (53%), Gaps = 18/415 (4%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ S + LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +
Sbjct: 27 YPVVSAEGCE---LILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGI 83
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
TH P I+L KL ++T L F G+ AVEVA+KM+ YW KG +++F+ +N
Sbjct: 84 THAPAIELCRKLVAMTPQPLECVFLADSGSVAVEVAMKMALQYWQAKG-EARQRFLTFRN 142
Query: 135 SYHGETLGALAVTNIQS-FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEI 193
YHG+T GA++V + + ++ L + P SR E +
Sbjct: 143 GYHGDTFGAMSVCDPDNSMHSLWKGYLPENLFAPAPQSRM------DGEWDERDMVGFAR 196
Query: 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
L+ + ++IAA+IIEP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK
Sbjct: 197 LMAAHRHEIAAVIIEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGK 256
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 313
FACEHAEI PD LCL K +TGG + LS +TT ++ +I F+H ++ GNPL
Sbjct: 257 LFACEHAEIAPDILCLGKALTGGTMTLSATLTTREVAETISN-GEAGCFMHGPTFMGNPL 315
Query: 314 ACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDP 373
AC AA A+L I + Q+++ ++ + L + + R G I +
Sbjct: 316 ACAAANASLAILESGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVETTHPVN 375
Query: 374 EQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
++ + +RP G +YLMPPYI+ ++Q +T+A+ + +
Sbjct: 376 ------MAALQKFFVEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424
>3dod_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, biotin biosynthesis, pyridoxal
phosphate, adenosyl-L-methionine; HET: PLP; 1.90A
{Bacillus subtilis} PDB: 3drd_A 3du4_A*
Length = 448
Score = 575 bits (1485), Expect = 0.0
Identities = 155/430 (36%), Positives = 239/430 (55%), Gaps = 12/430 (2%)
Query: 8 KKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE 67
K N L+I S + D++GK Y D SS W+N+ GH ++ A+K QL K+
Sbjct: 21 KDYDENPLIIESGTGIK---VKDINGKEYYDGFSSVWLNVHGHRKKELDDAIKKQLGKIA 77
Query: 68 HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 127
H L +T+ P +L+E L ++ KL FY GA A+E+ALKM+F YW N G K+
Sbjct: 78 HSTLLGMTNVPATQLAETLIDISPKKLTRVFYSDSGAEAMEIALKMAFQYWKNIGKPEKQ 137
Query: 128 KFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCA 187
KFI ++N YHG+T+GA++V +I+ F +Y L+ ++Y P G+ +C
Sbjct: 138 KFIAMKNGYHGDTIGAVSVGSIELFHHVYGPLMFESYKAPIPYVYRSESGDPDECRDQCL 197
Query: 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247
+L LL+++H +IAA+ IE +VQ A GMI+ YL VRE+C Y++ +I DE+A G
Sbjct: 198 R-ELAQLLEEHHEEIAALSIESMVQGASGMIVMPEGYLAGVRELCTTYDVLMIVDEVATG 256
Query: 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYY-KNNINIFLHSH 306
GRTGK FACEH + PD + KGITGGYLP+++ T+ IY + Y N+ F H H
Sbjct: 257 FGRTGKMFACEHENVQPDLMAAGKGITGGYLPIAVTFATEDIYKAFYDDYENLKTFFHGH 316
Query: 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF 366
SY+GN L C AL L +F +NI++++++ KK+ L L P + + RQ G +
Sbjct: 317 SYTGNQLGCAVALENLALFESENIVEQVAEKSKKLHFLLQDLHALPHVGDIRQLGFMCGA 376
Query: 367 DVIIEDPEQIETFS------KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSA 420
+ ++ E E + K + + +L RP+G+ + +PP E+ M +
Sbjct: 377 E-LVRSKETKEPYPADRRIGYKVSLKMRELGMLTRPLGDVIAFLPPLASTAEELSEMVAI 435
Query: 421 IFQTFNEVIT 430
+ Q +EV +
Sbjct: 436 MKQAIHEVTS 445
>3tfu_A Adenosylmethionine-8-amino-7-oxononanoate aminotr; transferase,
transferase-transferase inhibitor complex; HET: PL8;
1.94A {Mycobacterium tuberculosis} PDB: 3tft_A* 3bv0_A*
3lv2_A*
Length = 457
Score = 574 bits (1483), Expect = 0.0
Identities = 129/422 (30%), Positives = 209/422 (49%), Gaps = 18/422 (4%)
Query: 8 KKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE 67
+++ + +V + +W + D LDA+SSWW + GH + +++AL QL +
Sbjct: 49 GREAVSPVVAVAAHGAWLTLIRDGQPIEVLDAMSSWWTAIHGHGHPALDQALTTQLRVMN 108
Query: 68 HVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKK 127
HVM LTH+P +L++ L +T L F+ G+ +VEVA KM+ YW +G K+
Sbjct: 109 HVMFGGLTHEPAARLAKLLVDITPAGLDTVFFSDSGSVSVEVAAKMALQYWRGRGLPGKR 168
Query: 128 KFICLQNSYHGETLGALAVTNIQS-FKEIYTSLLNKTYIITTPDSRNINKGNSANEIARC 186
+ + + YHG+T A+++ + ++T +L
Sbjct: 169 RLMTWRGGYHGDTFLAMSICDPHGGMHSLWTDVLAAQVFAPQVPRDY----------DPA 218
Query: 187 AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
E L ++ ++AA+++EP+VQ AGGM +D YL +R+IC Y + LI DEIA
Sbjct: 219 YSAAFEAQLAQHAGELAAVVVEPVVQGAGGMRFHDPRYLHDLRDICRRYEVLLIFDEIAT 278
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSH 306
G GRTG FA +HA + PD +C+ K +TGGYL L+ + T + ++I +H
Sbjct: 279 GFGRTGALFAADHAGVSPDIMCVGKALTGGYLSLAATLCTADVAHTISA-GAAGALMHGP 337
Query: 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF 366
++ NPLAC ++A++E+ + RI++ +T L + P + + R G I
Sbjct: 338 TFMANPLACAVSVASVELLLGQDWRTRITELAAGLTAGLDTARALPAVTDVRVCGAIGVI 397
Query: 367 DVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426
+ + P AAL + LRP N VY MPPYI EI +TSA+ +
Sbjct: 398 E--CDRPVD----LAVATPAALDRGVWLRPFRNLVYAMPPYICTPAEITQITSAMVEVAR 451
Query: 427 EV 428
V
Sbjct: 452 LV 453
>4a0g_A Adenosylmethionine-8-amino-7-oxononanoate aminotransferase;
BIO3-BIO1, biotin synthesis; HET: PLP; 2.50A
{Arabidopsis thaliana} PDB: 4a0h_A* 4a0r_A* 4a0f_A*
Length = 831
Score = 511 bits (1317), Expect = e-175
Identities = 95/453 (20%), Positives = 185/453 (40%), Gaps = 54/453 (11%)
Query: 30 DVSGKRYLDAISSWWVNLFGHS-NSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSS 88
+ S + DA +SWW + + + + + + HVM ++P +K +E L
Sbjct: 376 NSSLSQQFDACASWWTQGPDPTFQAELAREMGYTAARFGHVMFPENVYEPALKCAELLLD 435
Query: 89 LT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN---------KKKFICLQNSYHG 138
+ ++ +G++A+E+ALKM+F + K I L+ SYHG
Sbjct: 436 GVGKGWASRVYFSDNGSTAIEIALKMAFRKFCVDHNFCEATEEEKHIVVKVIALRGSYHG 495
Query: 139 ETLGALAVTNIQSFKEIYTSLL----------------NKTYIITTPDSRNINKGNSANE 182
+TLGA+ + N ++ I+ P+S +
Sbjct: 496 DTLGAMEAQAPSPYTGFLQQPWYTGRGLFLDPPTVFLSNGSWNISLPESFSEIAPEYGTF 555
Query: 183 IARCAIFDL--------------------EILLKKNHNKIAAIIIEPLVQCAGGMIMYDS 222
+R IFD E + + A+IIEP++ AGGM M D
Sbjct: 556 TSRDEIFDKSRDASTLARIYSAYLSKHLQEHSGVRQSAHVGALIIEPVIHGAGGMHMVDP 615
Query: 223 IYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL 282
++ +++ C N I +I DE+ G R G E PD C +K +TGG +PL++
Sbjct: 616 LFQRVLVNECRNRKIPVIFDEVFTGFWRLGVETTTELLGCKPDIACFAKLLTGGMVPLAV 675
Query: 283 VMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQR---ISQDMK 339
+ TD +++S + + LH HSYS + + C A ++ F + ++
Sbjct: 676 TLATDAVFDSFSGDSKLKALLHGHSYSAHAMGCATAAKAIQWFKDPETNHNITSQGKTLR 735
Query: 340 KI--TKALTSLITHPKIINFRQKGMIWAFDV--IIEDPEQIETFSKKFFVAALKNELLLR 395
++ + + + +H + G ++A ++ + ++K + ++ + R
Sbjct: 736 ELWDEELVQQISSHSAVQRVVVIGTLFALELKADASNSGYASLYAKSLLIMLREDGIFTR 795
Query: 396 PIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
P+GN +YLM + + + + +++ E
Sbjct: 796 PLGNVIYLMCGPCTSPEICRRLLTKLYKRLGEF 828
>3n5m_A Adenosylmethionine-8-amino-7-oxononanoate aminotr;
aminotransferase, csgid; 2.05A {Bacillus anthracis}
Length = 452
Score = 411 bits (1059), Expect = e-141
Identities = 121/428 (28%), Positives = 197/428 (46%), Gaps = 22/428 (5%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
V + W + D+ GKRYLD +S W G+ + +A QL L + +S
Sbjct: 33 TVGAKAEGCW---VEDIQGKRYLDGMSGLWCVNSGYGRKELAEAAYKQLQTLSYFPMS-Q 88
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
+H+P IKL+EKL+ F+ + G+ A E A K++ Y+ KG ++ KF+
Sbjct: 89 SHEPAIKLAEKLNEWLG-GEYVIFFSNSGSEANETAFKIARQYYAQKGEPHRYKFMSRYR 147
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLE- 192
YHG T+ +A T + Y + +T PD R C +++
Sbjct: 148 GYHGNTMATMAATGQAQRRYQYEPFASGFLHVTPPDCYRMPGIERENIYDVECVK-EVDR 206
Query: 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252
++ + IAA I+EP + GG++M Y+K V E C + LI+DE+ G GRTG
Sbjct: 207 VMTWELSETIAAFIMEP-IITGGGILMAPQDYMKAVHETCQKHGALLISDEVICGFGRTG 265
Query: 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 312
K F + ++ PD + ++KGIT YLPLS +IY + K F H +++ GNP
Sbjct: 266 KAFGFMNYDVKPDIITMAKGITSAYLPLSATAVKREIYEAFKGKGEYEFFRHINTFGGNP 325
Query: 313 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIE 371
AC AL LEI +N+++R +Q + + L I HP + + R KG++ + ++
Sbjct: 326 AACALALKNLEIIENENLIERSAQMGSLLLEQLKEEIGEHPLVGDIRGKGLLVGIE-LVN 384
Query: 372 DPEQIETF----SKKFFVAALKNELLLRPIG-------NTVYLMPPYILNKNEIQHMTSA 420
D E E A + L++ G N + L PP +++ EI +
Sbjct: 385 DKETKEPIDNDKIASVVNACKEKGLIIGRNGMTTAGYNNILTLAPPLVISSEEIAFVIGT 444
Query: 421 IFQTFNEV 428
+ +
Sbjct: 445 LKTAMERI 452
>3a8u_X Omega-amino acid--pyruvate aminotransferase; large pleated sheet,
transaminase, pyridox phosphate; HET: PLP; 1.40A
{Pseudomonas putida}
Length = 449
Score = 389 bits (1001), Expect = e-133
Identities = 107/422 (25%), Positives = 194/422 (45%), Gaps = 10/422 (2%)
Query: 12 SNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVML 71
+ +I + + SW L+D G++ D++S W GH+ I +A+ QL+ L++
Sbjct: 31 RDPRLIVAAEGSW---LVDDKGRKVYDSLSGLWTCGAGHTRKEIQEAVAKQLSTLDYSPG 87
Query: 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 131
H +L+EK++ LT L H F+ G+ A+KM YW KG K K I
Sbjct: 88 FQYGHPLSFQLAEKITDLTPGNLNHVFFTDSGSECALTAVKMVRAYWRLKGQATKTKMIG 147
Query: 132 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFD 190
YHG + ++ + ++++ + + N E +
Sbjct: 148 RARGYHGVNIAGTSLGGVNGNRKLFGQPMQDVDHLPHTLLASNAYSRGMPKEGGIALADE 207
Query: 191 LE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249
L ++ + + IAA+ +EP + + G+++ YLK REICN +NI L+ DE+ G G
Sbjct: 208 LLKLIELHDASNIAAVFVEP-LAGSAGVLVPPEGYLKRNREICNQHNILLVFDEVITGFG 266
Query: 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY---YKNNINIFLHSH 306
RTG F + + PD +C++K +T G +P+ V+ + +IY + F H +
Sbjct: 267 RTGSMFGADSFGVTPDLMCIAKQVTNGAIPMGAVIASTEIYQTFMNQPTPEYAVEFPHGY 326
Query: 307 SYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAF 366
+YS +P+AC A LA L + K+N++Q +++ KAL + +I+ R G+ A
Sbjct: 327 TYSAHPVACAAGLAALCLLQKENLVQSVAEVAPHFEKALHGIKGAKNVIDIRNFGLAGAI 386
Query: 367 DVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426
I + +A K +R G+T+ P + ++ + A+ + N
Sbjct: 387 Q-IAPRDGDAIVRPFEAGMALWKAGFYVRFGGDTLQFGPTFNSKPQDLDRLFDAVGEVLN 445
Query: 427 EV 428
++
Sbjct: 446 KL 447
>3nui_A Pyruvate transaminase; amino transferase, transferase; 2.00A
{Vibrio fluvialis}
Length = 478
Score = 381 bits (982), Expect = e-130
Identities = 104/429 (24%), Positives = 194/429 (45%), Gaps = 16/429 (3%)
Query: 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLE-H 68
+V+ + + ++DV+G+RYLDA S W + G + + A K Q + +
Sbjct: 40 HQRGTVVVTHGEGPY---IVDVNGRRYLDANSGLWNMVAGFDHKGLIDAAKAQYERFPGY 96
Query: 69 VMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128
+ LSEKL ++ + G FY + G+ A + +KM + +G K+K
Sbjct: 97 HAFFGRMSDQTVMLSEKLVEVSPFDSGRVFYTNSGSEANDTMVKMLWFLHAAEGKPQKRK 156
Query: 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCA 187
+ N+YHG T + ++T + ++ L +T P R +G + +
Sbjct: 157 ILTRWNAYHGVTAVSASMTGK-PYNSVFGLPLPGFVHLTCPHYWRYGEEGETEEQFVARL 215
Query: 188 IFDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAV 246
+LE + ++ + IA EP V AGG+I Y + + I Y+I +I+DE+
Sbjct: 216 ARELEETIQREGADTIAGFFAEP-VMGAGGVIPPAKGYFQAILPILRKYDIPVISDEVIC 274
Query: 247 GCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY-YKNNINIFLHS 305
G GRTG + C + PD + SK +T G+ P+ V+ ++ + I F H
Sbjct: 275 GFGRTGNTWGCVTYDFTPDAIISSKNLTAGFFPMGAVILGPELSKRLETAIEAIEEFPHG 334
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWA 365
+ SG+P+ C AL +++ + + + + + + + L + P I +R G +WA
Sbjct: 335 FTASGHPVGCAIALKAIDVVMNEGLAENVRRLAPRFEERLKHIAERPNIGEYRGIGFMWA 394
Query: 366 FDVIIEDPEQIETF------SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS 419
+ ++D F S++ L+ RP+G +V L PP+IL + ++ M
Sbjct: 395 LE-AVKDKASKTPFDGNLSVSERIANTCTDLGLICRPLGQSVVLCPPFILTEAQMDEMFD 453
Query: 420 AIFQTFNEV 428
+ + ++V
Sbjct: 454 KLEKALDKV 462
>3gju_A Putative aminotransferase; pyridoxal phosphate, PLP-dependent
transferase-like fold, ST genomics, joint center for
structural genomics, JCSG; HET: MSE LLP PLP; 1.55A
{Mesorhizobium loti} PDB: 3fcr_A*
Length = 460
Score = 359 bits (924), Expect = e-121
Identities = 90/441 (20%), Positives = 183/441 (41%), Gaps = 18/441 (4%)
Query: 1 MNNIVYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALK 60
++ + S ++ + + D +G++ +DA + + G+ I A+
Sbjct: 21 STHMGTHARGESPTRIMAGGEGVT---VWDNNGRKSIDAFAGLYCVNVGYGRQKIADAIA 77
Query: 61 NQLNKLEHV-MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWY 119
Q L + + I L++ + + ++G G+ A E +K+ ++Y
Sbjct: 78 TQAKNLAYYHAYVGHGTEASITLAKMIIDRAPKGMSRVYFGLSGSDANETNIKLIWYYNN 137
Query: 120 NKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGN 178
G KKK I YHG + ++T + F + P R ++
Sbjct: 138 VLGRPEKKKIISRWRGYHGSGVMTGSLTGLDLFHNAFDLPRAPVLHTEAPYYFRRTDRSM 197
Query: 179 SANEIARCAIFDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI 237
S + ++ LE ++L + IAA I EP + GG++ + Y + ++ + Y++
Sbjct: 198 SEEQFSQHCADKLEEMILAEGPETIAAFIGEP-ILGTGGIVPPPAGYWEKIQAVLKKYDV 256
Query: 238 HLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIY-YK 296
L+ADE+ G GR G F +H I PD + ++KG+T Y PLS V+ D+++ +
Sbjct: 257 LLVADEVVTGFGRLGTMFGSDHYGIKPDLITIAKGLTSAYAPLSGVIVADRVWQVLVQGS 316
Query: 297 NNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALT-SLITHPKII 355
+ + H +YS +P+ A +A LE+ ++ +++ + L ++ H +
Sbjct: 317 DKLGSLGHGWTYSAHPICVAAGVANLELIDEMDLVTNAGETGAYFRAELAKAVGGHKNVG 376
Query: 356 NFRQKGMIWAFDVIIEDPEQIETF------SKKFFVAALKNELLLRPI--GNTVYLMPPY 407
R GM+ A + + D + F + A + ++ R + G+ + PP
Sbjct: 377 EVRGDGMLAAVE-FVADKDDRVFFDASQKIGPQVATALAASGVIGRAMPQGDILGFAPPL 435
Query: 408 ILNKNEIQHMTSAIFQTFNEV 428
L + + + S V
Sbjct: 436 CLTREQADIVVSKTADAVKSV 456
>4a6r_A Omega transaminase; transferase, PLP-binding enzyme, transaminase
fold type I; HET: TA8; 1.35A {Chromobacterium violaceum}
PDB: 4a6t_A* 4a6u_A 4a72_A* 4ah3_A*
Length = 459
Score = 335 bits (862), Expect = e-112
Identities = 105/411 (25%), Positives = 186/411 (45%), Gaps = 15/411 (3%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV-MLSNLTHKPVIKLSEKL 86
L D G + +D ++ W G+ +A + Q+ +L TH V++LS L
Sbjct: 44 LWDSEGNKIIDGMAGLWCVNVGYGRKDFAEAARRQMEELPFYNTFFKTTHPAVVELSSLL 103
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+ +T FY + G+ +V+ ++M YW +G KK I N YHG T+G ++
Sbjct: 104 AEVTPAGFDRVFYTNSGSESVDTMIRMVRRYWDVQGKPEKKTLIGRWNGYHGSTIGGASL 163
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAI 205
++ E + I P K + +E A LE +L+ +K+AA
Sbjct: 164 GGMKYMHEQGDLPIPGMAHIEQPWWYKHGKDMTPDEFGVVAARWLEEKILEIGADKVAAF 223
Query: 206 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPD 265
+ EP +Q AGG+I+ + Y + IC Y++ L+ADE+ G GRTG++F +H PD
Sbjct: 224 VGEP-IQGAGGVIVPPATYWPEIERICRKYDVLLVADEVICGFGRTGEWFGHQHFGFQPD 282
Query: 266 FLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIF 325
+KG++ GYLP+ V ++ + F H +YSG+P+ A A +
Sbjct: 283 LFTAAKGLSSGYLPIGAVFVGKRVAEGL---IAGGDFNHGFTYSGHPVCAAVAHANVAAL 339
Query: 326 NKDNILQRISQDM-KKITKALT-SLITHPKIINFRQKGMIWAFDVIIEDPEQIETF---- 379
+ I+QR+ D+ + K + + + R GM+ AF ++++ + E F
Sbjct: 340 RDEGIVQRVKDDIGPYMQKRWRETFSRFEHVDDVRGVGMVQAFT-LVKNKAKRELFPDFG 398
Query: 380 --SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
+N L++R G+ + PP ++ + E+ M + + E
Sbjct: 399 EIGTLCRDIFFRNNLIMRACGDHIVSAPPLVMTRAEVDEMLAVAERCLEEF 449
>3i5t_A Aminotransferase; pyridoxal 5'-phosphate, PSI-2, NYSGXRC, ST
genomics, protein structure initiative; HET: PLP; 2.00A
{Rhodobacter sphaeroides 2}
Length = 476
Score = 335 bits (862), Expect = e-111
Identities = 105/411 (25%), Positives = 193/411 (46%), Gaps = 14/411 (3%)
Query: 28 LIDVSGKRYLDAISSWW-VNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKL 86
+ G+R +D + W + G+ I A+ +Q L + + P +L+EK+
Sbjct: 48 VHTEDGRRLIDGPAGMWCAQV-GYGRREIVDAMAHQAMVLPYASPWYMATSPAARLAEKI 106
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
++LT L F+ + G++AV+ AL+ S Y G KK+ I + YHG T A
Sbjct: 107 ATLTPGDLNRIFFTTGGSTAVDSALRFSEFYNNVLGRPQKKRIIVRYDGYHGSTALTAAC 166
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE-ILLKKNHNKIAAI 205
T + ++ +++P+ R+ S + + E + + IAA
Sbjct: 167 TGRTGNWPNFDIAQDRISFLSSPNPRH-AGNRSQEAFLDDLVQEFEDRIESLGPDTIAAF 225
Query: 206 IIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHA-EIWP 264
+ EP + +GG+I+ + Y + IC ++I I+DE+ G GR G++FA E + P
Sbjct: 226 LAEP-ILASGGVIIPPAGYHARFKAICEKHDILYISDEVVTGFGRCGEWFASEKVFGVVP 284
Query: 265 DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINI-FLHSHSYSGNPLACCAALATLE 323
D + +KG+T GY+PL + ++ + I +N F + ++YS P+AC AALA +E
Sbjct: 285 DIITFAKGVTSGYVPLGGLAISEAVLARISGENAKGSWFTNGYTYSNQPVACAAALANIE 344
Query: 324 IFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETF---- 379
+ ++ I+ + + AL SL P + R G++ + DP + +
Sbjct: 345 LMEREGIVDQAREMADYFAAALASLRDLPGVAETRSVGLVGCVQ-CLLDPTRADGTAEDK 403
Query: 380 --SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
+ K + L++RP+G+ + PP I+++ +I M + + Q EV
Sbjct: 404 AFTLKIDERCFELGLIVRPLGDLCVISPPLIISRAQIDEMVAIMRQAITEV 454
>3i4j_A Aminotransferase, class III; structural GENOMICS,NYSGXRC, target
11246C, pyridoxal phosphate, PSI-2, protein structure
initiative; 1.70A {Deinococcus radiodurans}
Length = 430
Score = 330 bits (849), Expect = e-110
Identities = 107/445 (24%), Positives = 196/445 (44%), Gaps = 32/445 (7%)
Query: 1 MNNIVYFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALK 60
M+N+ Y K V + + L D +G+RYLD S V GH + + + +
Sbjct: 1 MSNVFYRSSKP--YPVAVRGEGVF---LYDDAGRRYLDGSSGALVANIGHGRAEVGERMA 55
Query: 61 NQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYN 120
Q +L V S + + + + +L+ + S G+ A E A+K++ Y
Sbjct: 56 AQAARLPFVHGSQFSSDVLEEYAGRLARFVGLPTFRFWAVSGGSEATESAVKLARQYHVE 115
Query: 121 KGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSA 180
+G + K I SYHG +LG+LA + + + +E+YT L+ P + A
Sbjct: 116 RGEPGRFKVITRVPSYHGASLGSLAASGMGARRELYTPLMRPEAWPKLPK------PDPA 169
Query: 181 NEIARCAIFDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHL 239
A A L +L ++ +AA + EP+V + + Y + VR+IC+ I
Sbjct: 170 RNGAEDAE-GLRALLEREGPETVAAFMAEPVVGASDAALAPAPGYYERVRDICDEAGIIF 228
Query: 240 IADEIAVGCGRTGKFFACEHAE-IWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNN 298
IADE+ G GR G A + PD L KG+ GY PL+ ++ ++Y ++
Sbjct: 229 IADEVMSGMGRCGSPLALSRWSGVTPDIAVLGKGLAAGYAPLAGLLAAPQVYETV--MGG 286
Query: 299 INIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINF 357
F+H +Y+G+P++ A L+ L+I ++++ + ++ L +L P+++
Sbjct: 287 SGAFMHGFTYAGHPVSVAAGLSVLDIVEREDLTGAAKERGAQLLAGLQALQARFPQMMQV 346
Query: 358 RQKGMIWAFDVIIEDPEQIETF-----SKKFFVAALKNELLLRP--------IGNTVYLM 404
R G++ + D + F + + AALK L+ P G+ + L
Sbjct: 347 RGTGLLLGVVL--GDLATGQAFETPGIASRIGAAALKRGLITYPGSGAEPNGRGDHLLLG 404
Query: 405 PPYILNKNEIQHMTSAIFQTFNEVI 429
PP + E+ + + + +V+
Sbjct: 405 PPLSITAAEVDGLLALLAGALEDVL 429
>3hmu_A Aminotransferase, class III; structural genomics, pyridoxal
phosphate, PSI-2, protein structure initiative; 2.10A
{Silicibacter pomeroyi}
Length = 472
Score = 331 bits (851), Expect = e-110
Identities = 113/429 (26%), Positives = 192/429 (44%), Gaps = 20/429 (4%)
Query: 10 KSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHV 69
VI + W L D G+ LDA++ W G+ + + Q+ +L +
Sbjct: 34 GEEGTRVITRARGVW---LNDSEGEEILDAMAGLWCVNIGYGRDELAEVAARQMRELPYY 90
Query: 70 -MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKK 128
TH P I L++KL+ L L H F+ G+ A + ++M YW NKG K
Sbjct: 91 NTFFKTTHVPAIALAQKLAELAPGDLNHVFFAGGGSEANDTNIRMVRTYWQNKGQPEKTV 150
Query: 129 FICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAI 188
I +N+YHG T+ + A+ + + + +I + A
Sbjct: 151 IISRKNAYHGSTVASSALGGMAGMHAQSGLIPDVHHINQPNWWAEGGDMDPEEFGLARAR 210
Query: 189 FDLE-ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247
+LE +L+ N++AA I EP VQ AGG+I+ Y ++ IC+ Y+I LIADE+ G
Sbjct: 211 -ELEEAILELGENRVAAFIAEP-VQGAGGVIVAPDSYWPEIQRICDKYDILLIADEVICG 268
Query: 248 CGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHS 307
GRTG +F + I P + ++KG++ GY P+ + D++ + I + F H ++
Sbjct: 269 FGRTGNWFGTQTMGIRPHIMTIAKGLSSGYAPIGGSIVCDEVAHVI----GKDEFNHGYT 324
Query: 308 YSGNPLACCAALATLEIFNKDNILQRISQDMKKI-TKALTSLITHPKIINFRQKGMIWAF 366
YSG+P+A AL L I ++NIL + + +L HP + + GM+ +
Sbjct: 325 YSGHPVAAAVALENLRILEEENILDHVRNVAAPYLKEKWEALTDHPLVGEAKIVGMMASI 384
Query: 367 DVIIEDPEQIETF-------SKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTS 419
+ + F N L++R +G+ + + PP ++ EI M
Sbjct: 385 A-LTPNKASRAKFASEPGTIGYICRERCFANNLIMRHVGDRMIISPPLVITPAEIDEMFV 443
Query: 420 AIFQTFNEV 428
I ++ +E
Sbjct: 444 RIRKSLDEA 452
>1zod_A DGD, 2,2-dialkylglycine decarboxylase; pyridoxal, cesium, lyase;
HET: MES PLP; 1.80A {Burkholderia cepacia} SCOP:
c.67.1.4 PDB: 1dka_A* 1m0o_A* 1m0p_A* 1m0n_A* 1zc9_A*
1zob_A* 1m0q_A* 2dkb_A* 1dgd_A* 1dge_A* 1d7u_A* 1d7s_A*
1d7r_A* 1d7v_A* 1z3z_A*
Length = 433
Score = 294 bits (754), Expect = 4e-96
Identities = 97/426 (22%), Positives = 185/426 (43%), Gaps = 30/426 (7%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
++I K S+ + D G+ LD S + GH + I + KL+H+ S +
Sbjct: 27 MIIERAKGSFVY---DADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDHLF-SEM 82
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
+PV+ L+ +L+++T L S GA + E A++M+ K + +
Sbjct: 83 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLV------TGKYEIVGFAQ 136
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLEI 193
S+HG T A + T + ++ ++ I P + R + N A + + ++
Sbjct: 137 SWHGMTGAAASATY-SAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDL 195
Query: 194 LLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGK 253
+ +++ +AA I EP + +GG+I Y+ ++ C + LI DE G GRTG
Sbjct: 196 IDRQSSGNLAAFIAEP-ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGT 254
Query: 254 FFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPL 313
FAC+ + PD L LSK + G PL+ ++T+ I + +L ++ +PL
Sbjct: 255 MFACQRDGVTPDILTLSKTLGAGL-PLAAIVTSAAIEERAHELG----YLFYTTHVSDPL 309
Query: 314 ACCAALATLEIFNKDNILQRISQDM-KKITKALTSLI-THPKIINFRQKGMIWAFDVIIE 371
L L++ +D ++ R + M ++ + L L+ I + R +G++ + I++
Sbjct: 310 PAAVGLRVLDVVQRDGLVAR-ANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVE-IVK 367
Query: 372 DPEQIE---TFSKKFFVAALKNELLLRPI-----GNTVYLMPPYILNKNEIQHMTSAIFQ 423
D E K + L + + G + PP ++++EI S + Q
Sbjct: 368 DRRTKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQ 427
Query: 424 TFNEVI 429
+
Sbjct: 428 AIERAL 433
>3oks_A 4-aminobutyrate transaminase; ssgcid, transferase, seattle
structural genomics center for infectious disease; HET:
LLP; 1.80A {Mycobacterium smegmatis} PDB: 3r4t_A* 3q8n_A
Length = 451
Score = 268 bits (688), Expect = 5e-86
Identities = 103/425 (24%), Positives = 179/425 (42%), Gaps = 31/425 (7%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ DV G R +D S V G+S + +A+++Q+ H
Sbjct: 45 VYAVRAGGGIVE---DVDGNRLIDLGSGIAVTTVGNSAPKVVEAVRSQVGDFTHTCFMVT 101
Query: 75 THKPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 133
++ + + E+L+ LT + + G+ AVE A+K++ + +K +
Sbjct: 102 PYEGYVAVCEQLNRLTPVRGDKRSALFNSGSEAVENAVKIA------RSHTHKPAVVAFD 155
Query: 134 NSYHGETLGALAVT-NIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDL 191
++YHG T +A+T + +K+ + + Y R+ G A
Sbjct: 156 HAYHGRTNLTMALTAKVMPYKDGFGPFAPEIYRAPLSYPFRDAEFGKELATDGELAAKRA 215
Query: 192 EILLKK--NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249
++ K + +AA++IEP +Q GG I+ +L + + C ++ IADE+ G
Sbjct: 216 ITVIDKQIGADNLAAVVIEP-IQGEGGFIVPADGFLPTLLDWCRKNDVVFIADEVQTGFA 274
Query: 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309
RTG FACEH I PD + +KGI GG LPLS V +I +S + +Y
Sbjct: 275 RTGAMFACEHEGIDPDLIVTAKGIAGG-LPLSAVTGRAEIMDSPHVSG------LGGTYG 327
Query: 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDV 368
GNP+AC AALAT+E + ++ R Q K + L L +I + R +G + A +
Sbjct: 328 GNPIACAAALATIETIESEGLVARAQQIEKIMKDRLGRLQAEDDRIGDVRGRGAMIAME- 386
Query: 369 IIEDPEQIE---TFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIF 422
+ E +K A +++ G N V +PP + + + +
Sbjct: 387 -LVKAGTTEPDADLTKALCAGAHAAGVIVLSCGTYGNVVRFLPPLSIGDDLLNEGLDVLE 445
Query: 423 QTFNE 427
+
Sbjct: 446 EVLRG 450
>1sff_A 4-aminobutyrate aminotransferase; enzyme complexes; HET: IK2; 1.90A
{Escherichia coli} SCOP: c.67.1.4 PDB: 1sf2_A* 1szk_A*
1szu_A* 1szs_A*
Length = 426
Score = 265 bits (679), Expect = 6e-85
Identities = 113/424 (26%), Positives = 190/424 (44%), Gaps = 34/424 (8%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ +N W DV G+ YLD V GH + + A++ QL KL H L
Sbjct: 25 IFADRAENCRVW---DVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTCFQVL 81
Query: 75 THKPVIKLSEKLSSLTQYKLGHC-FYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 133
++P ++L E ++ + G+ AVE A+K++ + I
Sbjct: 82 AYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAA------TKRSGTIAFS 135
Query: 134 NSYHGETLGALAVTNIQS-FKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDL 191
+YHG T LA+T + + + Y P I++ ++ I R IF
Sbjct: 136 GAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGISEDDAIASIHR--IFKN 193
Query: 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251
+ IAAI+IEP VQ GG +++ +R +C+ + I LIADE+ G GRT
Sbjct: 194 DA----APEDIAAIVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAGRT 248
Query: 252 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN 311
G FA E + PD +K I GG PL+ V ++ +++ +Y+GN
Sbjct: 249 GTLFAMEQMGVAPDLTTFAKSIAGG-FPLAGVTGRAEVMDAVAPGG------LGGTYAGN 301
Query: 312 PLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVII 370
P+AC AAL L++F ++N+LQ+ + +K+ L ++ HP+I + R G + A + +
Sbjct: 302 PIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE-LF 360
Query: 371 EDPEQIE---TFSKKFFVAALKNELLLR---PIGNTVYLMPPYILNKNEIQHMTSAIFQT 424
ED + + + + A L+L P N + ++ P + +I+ I Q
Sbjct: 361 EDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIISQC 420
Query: 425 FNEV 428
F+E
Sbjct: 421 FDEA 424
>3dxv_A Alpha-amino-epsilon-caprolactam racemase; fold-TYPE1,
pyridoxal-5'-phosphate dependent racemase, pyrid
phosphate, isomerase; HET: PLP; 2.21A {Achromobacter
obae} PDB: 2zuk_A* 3dxw_A*
Length = 439
Score = 264 bits (676), Expect = 2e-84
Identities = 95/426 (22%), Positives = 175/426 (41%), Gaps = 39/426 (9%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
L I + + LI+ +G+ +D +W G+ + I A+ + +
Sbjct: 27 LAISGGRGAR---LIEENGRELIDLSGAWGAASLGYGHPAIVAAVSAAAANPAGATILSA 83
Query: 75 THKPVIKLSEKLSSLT-QYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 133
++ P + L+E+L + ++G G+ A E A + + I
Sbjct: 84 SNAPAVTLAERLLASFPGEGTHKIWFGHSGSDANEAAYRAI------VKATGRSGVIAFA 137
Query: 134 NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDS-RNINKGNSANEIARCAIFDLE 192
+YHG T+G++A + + + ++ PD R + + I E
Sbjct: 138 GAYHGCTVGSMAFSGHSVQA--DAAKADGLILLPYPDPYRPYRNDPTGDAILT---LLTE 192
Query: 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252
L I A IEP +Q GG+I+ +L+ +IC + I ++ DE+ VG R+G
Sbjct: 193 KLAAVPAGSIGAAFIEP-IQSDGGLIVPPDGFLRKFADICRAHGILVVCDEVKVGLARSG 251
Query: 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLH-SHS--YS 309
+ EH PD L L KG+ GG LPLS V+ +I +
Sbjct: 252 RLHCFEHEGFVPDILVLGKGLGGG-LPLSAVIAPAEILDC----------ASAFAMQTLH 300
Query: 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDV 368
GNP++ A LA LE ++D++ + + + L+ L HP I + R +G+ +
Sbjct: 301 GNPISAAAGLAVLETIDRDDLPAMAERKGRLLRDGLSELAKRHPLIGDIRGRGLACGME- 359
Query: 369 IIEDPEQIE---TFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIF 422
++ D + E + K A + L++ +G N + PP + + +I +
Sbjct: 360 LVCDRQSREPARAETAKLIYRAYQLGLVVYYVGMNGNVLEFTPPLTITETDIHKALDLLD 419
Query: 423 QTFNEV 428
+ F+E+
Sbjct: 420 RAFSEL 425
>4ffc_A 4-aminobutyrate aminotransferase (GABT); structural genomics,
niaid, national institute of allergy AN infectious
diseases; HET: LLP; 1.80A {Mycobacterium abscessus}
Length = 453
Score = 264 bits (677), Expect = 3e-84
Identities = 103/423 (24%), Positives = 179/423 (42%), Gaps = 30/423 (7%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ D G ++D + V G S+ + A+ +Q H
Sbjct: 48 VYAVDADGGVIV---DADGNSFIDLGAGIAVTTVGASHPAVAAAIADQATHFTHTCFMVT 104
Query: 75 THKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 133
++ ++++E L++LT + GA AVE A+K++ + + +
Sbjct: 105 PYEQYVQVAELLNALTPGDHDKRTALFNSGAEAVENAIKVA------RLATGRPAVVAFD 158
Query: 134 NSYHGETLGALAVT-NIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192
N+YHG T +A+T +K + + Y + G + E AR AI +E
Sbjct: 159 NAYHGRTNLTMALTAKSMPYKSQFGPFAPEVYRMPASYPLRDEPGLTGEEAARRAISRIE 218
Query: 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252
+ +AAIIIEP +Q GG I+ +L + + + IADE+ G RTG
Sbjct: 219 TQI--GAQSLAAIIIEP-IQGEGGFIVPAPGFLATLTAWASENGVVFIADEVQTGFARTG 275
Query: 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 312
+FA EH I PD + ++KGI GG +PLS V ++ +++Y +Y GNP
Sbjct: 276 AWFASEHEGIVPDIVTMAKGIAGG-MPLSAVTGRAELMDAVYAGG------LGGTYGGNP 328
Query: 313 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIE 371
+ C AA+A L + + ++ R +T L++L I R +G + A + I
Sbjct: 329 VTCAAAVAALGVMRELDLPARARAIEASVTSRLSALAEEVDIIGEVRGRGAMLAIE--IV 386
Query: 372 DPEQIE---TFSKKFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIFQTF 425
P +E +K AL +L+ G N + L+PP ++ + + +A+
Sbjct: 387 KPGTLEPDAALTKSIAAEALSQGVLILTCGTFGNVIRLLPPLVIGDDLLDEGITALSDII 446
Query: 426 NEV 428
Sbjct: 447 RAK 449
>2pb2_A Acetylornithine/succinyldiaminopimelate aminotran; ARGD, pyridoxal
5'-phosphate, arginine metabolism, lysine biosynthesis,
gabaculine; HET: PLP; 1.91A {Salmonella typhimurium}
PDB: 2pb0_A*
Length = 420
Score = 258 bits (662), Expect = 2e-82
Identities = 98/405 (24%), Positives = 177/405 (43%), Gaps = 39/405 (9%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKL 86
+ D GK Y+D V GH + + +ALK+Q L H SN+ T++P ++L KL
Sbjct: 51 VWDQQGKEYIDFAGGIAVTALGHCHPALVEALKSQGETLWHT--SNVFTNEPALRLGRKL 108
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
T + + G A E A K++ HY + K K I N++HG +L ++V
Sbjct: 109 IDAT--FAERVLFMNSGTEANETAFKLARHYACVRHSPFKTKIIAFHNAFHGRSLFTVSV 166
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
+ + + D ++ DL + + A++
Sbjct: 167 GGQPKYSDGFGPKP--------ADIIHVPFN------------DLHAVKAVMDDHTCAVV 206
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
+EP +Q GG+ +LK +R++C+ + L+ DE+ G GRTG FA H + PD
Sbjct: 207 VEP-IQGEGGVQAATPEFLKGLRDLCDEHQALLVFDEVQCGMGRTGDLFAYMHYGVTPDI 265
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
L +K + GG P+S ++TT +I ++ + + H +Y GNPLAC A A +I N
Sbjct: 266 LTSAKALGGG-FPVSAMLTTQEIASAFHVGS------HGSTYGGNPLACAVAGAAFDIIN 318
Query: 327 KDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 385
+LQ I ++ + L ++ + R G++ E + + ++ F
Sbjct: 319 TPEVLQGIHTKRQQFVQHLQAIDEQFDIFSDIRGMGLLIG----AELKPKYKGRARDFLY 374
Query: 386 AALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEVI 429
A + +++ G + + P ++ + +I Q +V+
Sbjct: 375 AGAEAGVMVLNAGADVMRFAPSLVVEEADIHEGMQRFAQAVGKVV 419
>2cjg_A L-lysine-epsilon aminotransferase; internal aldimine, pyridoxal
phosphate, PLP, RV3290C, lysine amino transferase; HET:
PMP; 1.95A {Mycobacterium tuberculosis} PDB: 2cjd_A*
2cin_A* 2cjh_A* 2jjg_A* 2jje_A* 2jjh_A* 2jjf_A
Length = 449
Score = 259 bits (664), Expect = 2e-82
Identities = 82/426 (19%), Positives = 160/426 (37%), Gaps = 38/426 (8%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM----LSNLTH 76
S+ I G+RYLD + + G + + + ++ + S++
Sbjct: 43 GGSYLVDAIT--GRRYLDMFTFVASSALGMNPPALVDDREFHAELMQAALNKPSNSDVYS 100
Query: 77 KPVIKLSEKLSSLTQYK-LGHCFYGSDGASAVEVALKMSFHYWYNKGFLN------KKKF 129
+ + E + + L H F+ GA AVE ALK +F + + +
Sbjct: 101 VAMARFVETFARVLGDPALPHLFFVEGGALAVENALKAAFDWKSRHNQAHGIDPALGTQV 160
Query: 130 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189
+ L+ ++HG + L++TN + + I P R + + A+
Sbjct: 161 LHLRGAFHGRSGYTLSLTNTKPTITARFPKFD-WPRIDAPYMRPGLDEPAMAALEAEALR 219
Query: 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249
+ + IA + EP +Q GG + + +RE+C+ ++ LI DE+ GCG
Sbjct: 220 QARAAFETRPHDIACFVAEP-IQGEGGDRHFRPEFFAAMRELCDEFDALLIFDEVQTGCG 278
Query: 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL----HS 305
TG +A + ++ PD + K + + N+F +
Sbjct: 279 LTGTAWAYQQLDVAPDIVAFGKKTQVCGVMAGRRVDEVA----------DNVFAVPSRLN 328
Query: 306 HSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKII-NFRQKGMI 363
++ GN A LE+ + + +R Q K + L L P ++ + R +G++
Sbjct: 329 STWGGNLTDMVRARRILEVIEAEGLFERAVQHGKYLRARLDELAADFPAVVLDPRGRGLM 388
Query: 364 WAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIF 422
AF + + + +++ P G +TV PP ++ EI +A+
Sbjct: 389 CAFS--LPTTAD----RDELIRQLWQRAVIVLPAGADTVRFRPPLTVSTAEIDAAIAAVR 442
Query: 423 QTFNEV 428
V
Sbjct: 443 SALPVV 448
>2eo5_A 419AA long hypothetical aminotransferase; PLP enzyme, structural
genomics, NPPSFA, N project on protein structural and
functional analyses; HET: PLP; 1.90A {Sulfolobus
tokodaii}
Length = 419
Score = 254 bits (652), Expect = 5e-81
Identities = 98/428 (22%), Positives = 187/428 (43%), Gaps = 49/428 (11%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFG-HSNSYINKALKNQLNKLEHVMLSN 73
LVI + W + DV G +YLD S VN G S+ + K Q+ KL H ++
Sbjct: 26 LVIDHGEGVWIY---DVDGNKYLDFTSGIGVNNLGWPSHPEVIKIGIEQMQKLAHAAAND 82
Query: 74 LTHKPVIKLSEKLSSLTQYKL-GHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132
+ P ++L++KL + + F+ + G A+E ++K+ + +K I
Sbjct: 83 FYNIPQLELAKKLVTYSPGNFQKKVFFSNSGTEAIEASIKVVKNT-------GRKYIIAF 135
Query: 133 QNSYHGETLGALAVT-NIQSFKEIYTSLLNKTYIITTPD----SRNINKGNSANEIARCA 187
+HG T G++++T + + I + + P+ +IN + +E+
Sbjct: 136 LGGFHGRTFGSISLTASKAVQRSIVGPFMPGVIHVPYPNPYRNPWHINGYENPSELVNRV 195
Query: 188 IFDLEILLKKNH---NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244
I +E + N ++A I EP +Q GG ++ + ++++ Y I L+ DE+
Sbjct: 196 IEFIEDYIFVNLVPPEEVAGIFFEP-IQGEGGYVIPPKNFFAELQKLAKKYGILLVDDEV 254
Query: 245 AVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF-- 302
+G GRTGK FA E+ PD + L+K + GG +P+ + + F
Sbjct: 255 QMGLGRTGKLFAIENFNTVPDVITLAKALGGGIMPIGATIFRKDL-----------DFKP 303
Query: 303 -LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKG 361
+HS+++ GN LAC ++I ++L +++ K + L L R G
Sbjct: 304 GMHSNTFGGNALACAIGSKVIDIV--KDLLPHVNEIGKIFAEELQGLADD-----VRGIG 356
Query: 362 MIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSA 420
+ W + + + + + K LLL P G + + ++PP ++++ E +
Sbjct: 357 LAWGLE--YNEKK----VRDRIIGESFKRGLLLLPAGRSAIRVIPPLVISEEEAKQGLDI 410
Query: 421 IFQTFNEV 428
+ + V
Sbjct: 411 LKKVIKVV 418
>2ord_A Acoat, acetylornithine aminotransferase; TM1785, acetylornithine
aminotransferase (EC 2.6.1.11) (ACOA structural
genomics; HET: MSE PLP; 1.40A {Thermotoga maritima MSB8}
PDB: 2e54_A*
Length = 397
Score = 251 bits (643), Expect = 6e-80
Identities = 106/407 (26%), Positives = 187/407 (45%), Gaps = 49/407 (12%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKL 86
+ D G YLD S VN+ GHS+ + +A+K+Q KL H SNL ++P ++L+E L
Sbjct: 34 IYDEKGNAYLDFTSGIAVNVLGHSHPRLVEAIKDQAEKLIHC--SNLFWNRPQMELAELL 91
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
S T G F+ + G A E A+K++ Y K K + + NS+HG TLG+L
Sbjct: 92 SKNT--FGGKVFFANTGTEANEAAIKIARKYGKKKS-EKKYRILSAHNSFHGRTLGSLTA 148
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
T +++ + L+ G ++E L +K + A+
Sbjct: 149 TGQPKYQKPFEPLV---------------PG-----FEYFEFNNVEDLRRKMSEDVCAVF 188
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
+EP +Q G++ +L+ R++C+ Y+ L+ DE+ G GRTGK FA + + PD
Sbjct: 189 LEP-IQGESGIVPATKEFLEEARKLCDEYDALLVFDEVQCGMGRTGKLFAYQKYGVVPDV 247
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL---HSHSYSGNPLACCAALATLE 323
L +KG+ GG +P+ V+ ++ N+ H ++ GNPLAC A + ++
Sbjct: 248 LTTAKGLGGG-VPIGAVIVNER----------ANVLEPGDHGTTFGGNPLACRAGVTVIK 296
Query: 324 IFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKK 382
K+ L+ + + + K L + + + + R G++ E +++
Sbjct: 297 ELTKEGFLEEVEEKGNYLMKKLQEMKEEYDVVADVRGMGLMIGIQFREEVS------NRE 350
Query: 383 FFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
+N+LL+ P G NT+ +PP + EI + + +
Sbjct: 351 VATKCFENKLLVVPAGNNTIRFLPPLTVEYGEIDLAVETLKKVLQGI 397
>3nx3_A Acoat, acetylornithine aminotransferase; csgid, structural
genomics, center for structural genomics O infectious
diseases; 1.80A {Campylobacter jejuni subsp}
Length = 395
Score = 249 bits (639), Expect = 3e-79
Identities = 111/403 (27%), Positives = 190/403 (47%), Gaps = 41/403 (10%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKL 86
L D K+YLD S V G++++ N +K Q++KL H SNL ++ + ++ L
Sbjct: 30 LFDDKAKKYLDFSSGIGVCALGYNHAKFNAKIKAQVDKLLHT--SNLYYNENIAAAAKNL 87
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+ + L F+ + G ++E A+K + Y +NKG + +FI ++S+HG TLGAL++
Sbjct: 88 AKAS--ALERVFFTNSGTESIEGAMKTARKYAFNKG-VKGGQFIAFKHSFHGRTLGALSL 144
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
T + +++ + L++ + D+ + K + K AII
Sbjct: 145 TANEKYQKPFKPLIS--------------------GVKFAKYNDISSVEKLVNEKTCAII 184
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
+E VQ GG+ + + K +R++C+ +I LIADEI G GR+GKFFA EHA+I PD
Sbjct: 185 LES-VQGEGGINPANKDFYKALRKLCDEKDILLIADEIQCGMGRSGKFFAYEHAQILPDI 243
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
+ +K + G L + + K+ ++ + H +Y GNPL C A EIF
Sbjct: 244 MTSAKALGCG-LSVGAFVINQKVASNSLEAGD-----HGSTYGGNPLVCAGVNAVFEIFK 297
Query: 327 KDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFV 385
++ IL+ +++ + ++L LI + G + + K
Sbjct: 298 EEKILENVNKLTPYLEQSLDELINEFDFCKKRKGLGFMQGLSLDKSVK------VAKVIQ 351
Query: 386 AALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
+N LLL G N + +PP IL K I M+ + +
Sbjct: 352 KCQENALLLISCGENDLRFLPPLILQKEHIDEMSEKLRKALKS 394
>3ruy_A Ornithine aminotransferase; structural genomics, csgid, center for
structural genomics O infectious diseases, alpha and
beta protein; HET: LLP; 2.65A {Bacillus anthracis}
Length = 392
Score = 245 bits (629), Expect = 7e-78
Identities = 104/416 (25%), Positives = 182/416 (43%), Gaps = 47/416 (11%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+VI + W D G RY+D +S++ GH + I AL +Q N++ S
Sbjct: 20 IVISKAEGVWVE---DPEGNRYMDLLSAYSAVNQGHRHPKIINALIDQANRVTLT--SRA 74
Query: 75 THKPV-IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFIC 131
H EK++ LT + GA AVE A+K + + Y+ + N+ + I
Sbjct: 75 FHSDQLGPWYEKVAKLTNK--EMVLPMNTGAEAVETAIKTARRWAYDVKKVEANRAEIIV 132
Query: 132 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191
++++HG T+GA+++++ + +K + + P I G DL
Sbjct: 133 CEDNFHGRTMGAVSMSSNEEYKRGFGPM--------LPGIIVIPYG------------DL 172
Query: 192 EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRT 251
E L AA I+EP +Q G+ + + +LK E+C N+ +ADEI G GRT
Sbjct: 173 EALKAAITPNTAAFILEP-IQGEAGINIPPAGFLKEALEVCKKENVLFVADEIQTGLGRT 231
Query: 252 GKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGN 311
GK FAC+ + PD L K + GG P+S I + H ++ GN
Sbjct: 232 GKVFACDWDNVTPDMYILGKALGGGVFPISCAAANRDILGVFEPGS------HGSTFGGN 285
Query: 312 PLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIE 371
PLAC ++A LE+ ++ + +R S + + I +P I R KG+ + +
Sbjct: 286 PLACAVSIAALEVLEEEKLTER-SLQLGEKLVGQLKEIDNPMITEVRGKGLFIG--IELN 342
Query: 372 DPEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFN 426
+P ++ + LL + N + + PP ++++ +++ I +
Sbjct: 343 EP------ARPYCEQLKAAGLLCKETHENVIRIAPPLVISEEDLEWAFQKIKAVLS 392
>1z7d_A Ornithine aminotransferase; structural genomics consortium, SGC,
malaria; 2.10A {Plasmodium yoelii yoelii} SCOP: c.67.1.4
PDB: 3lg0_A 3ntj_A
Length = 433
Score = 246 bits (631), Expect = 1e-77
Identities = 99/413 (23%), Positives = 167/413 (40%), Gaps = 45/413 (10%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPV- 79
K + + DV+ KRY D +S++ GH + I A+ NQ L S
Sbjct: 55 KGVFVY---DVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTIC--SRAFFSVPL 109
Query: 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYH 137
L++L Y + GA A E A K+ + Y + N K + +N++
Sbjct: 110 GICERYLTNLLGY--DKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKNNFS 167
Query: 138 GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK 197
G TLG ++ + + + P + DLE L ++
Sbjct: 168 GRTLGCISASTTKKCTSNFGPF--------APQFSKVPYD------------DLEALEEE 207
Query: 198 NHNK-IAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 256
+ + A I+EP +Q G+I+ YL+ V +IC YN+ +ADE+ G GRTGK
Sbjct: 208 LKDPNVCAFIVEP-IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKLLC 266
Query: 257 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 316
H + PD + L K ++GG+ P+S V+ D I I H +Y GNPLA
Sbjct: 267 VHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKPGE------HGSTYGGNPLAAS 320
Query: 317 AALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDVIIEDPEQ 375
+ L + + + + + + L + + + R KG++ A + E
Sbjct: 321 ICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEF---KNEL 377
Query: 376 IETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
+ + +N L+ R + T+ L PP + K ++ T I +T
Sbjct: 378 VN--VLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKF 428
>1vef_A Acetylornithine/acetyl-lysine aminotransferase; PLP, riken
structural genomics/proteomics initiative, RSGI,
structural genomics; HET: PLP; 1.35A {Thermus
thermophilus} SCOP: c.67.1.4 PDB: 1wkg_A* 1wkh_A*
Length = 395
Score = 242 bits (621), Expect = 1e-76
Identities = 97/396 (24%), Positives = 169/396 (42%), Gaps = 46/396 (11%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKL 86
+ D G Y+D + + V GH N + +A+K Q L + + L
Sbjct: 39 VWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAM--PQTLPTPMRGEFYRTL 96
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+++ +L F + G A E ALK + + +KKF+ + G T+G+L+V
Sbjct: 97 TAILPPELNRVFPVNSGTEANEAALKFARAHTG------RKKFVAAMRGFSGRTMGSLSV 150
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
T ++E + L+ I D+E L + + AA+I
Sbjct: 151 TWEPKYREPFLPLV--------EPVEFIPYN------------DVEALKRAVDEETAAVI 190
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
+EP VQ GG+ +L+ REI LI DEI G GRTGK FA EH I PD
Sbjct: 191 LEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTGKRFAFEHFGIVPDI 249
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
L L+K + GG +PL + + +++ S+ H ++ GNPLA A +A +
Sbjct: 250 LTLAKALGGG-VPLGVAVMREEVARSMPKGG------HGTTFGGNPLAMAAGVAAIRYLE 302
Query: 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 386
+ + +R ++ + L ++ PKI R G++ ++ + I
Sbjct: 303 RTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKAAPYIAR-------L 354
Query: 387 ALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAI 421
++ +L G + +PP ++ K +++ + A+
Sbjct: 355 EKEHRVLALQAGPTVIRFLPPLVIEKEDLERVVEAV 390
>2oat_A Ornithine aminotransferase; 5-fluoromethylornithine, PLP-dependent
ENZ pyridoxal phosphate; HET: PFM; 1.95A {Homo sapiens}
SCOP: c.67.1.4 PDB: 1oat_A* 2byj_A* 2byl_A* 1gbn_A*
2can_A*
Length = 439
Score = 241 bits (616), Expect = 2e-75
Identities = 103/412 (25%), Positives = 185/412 (44%), Gaps = 44/412 (10%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPV 79
K + W DV G++Y D +SS+ GH + I ALK+Q++KL S + +
Sbjct: 66 KGIYLW---DVEGRKYFDFLSSYSAVNQGHCHPKIVNALKSQVDKLTLT--SRAFYNNVL 120
Query: 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFL--NKKKFICLQNSYH 137
+ E ++ L Y + G A E A K++ + Y + K K + ++
Sbjct: 121 GEYEEYITKLFNY--HKVLPMNTGVEAGETACKLARKWGYTVKGIQKYKAKIVFAAGNFW 178
Query: 138 GETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKK 197
G TL A++ + + + + P I DL L +
Sbjct: 179 GRTLSAISSSTDPTSYDGFGPF--------MPGFDIIPYN------------DLPALERA 218
Query: 198 -NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFA 256
+AA ++EP +Q G+++ D YL VRE+C + + IADEI G RTG++ A
Sbjct: 219 LQDPNVAAFMVEP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTGRWLA 277
Query: 257 CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACC 316
++ + PD + L K ++GG P+S V+ D I +I H +Y GNPL C
Sbjct: 278 VDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HGSTYGGNPLGCR 331
Query: 317 AALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQI 376
A+A LE+ ++N+ + + + I + + + R KG++ A ++I++ +
Sbjct: 332 VAIAALEVLEEENLAEN-ADKLGIILRNELMKLPSDVVTAVRGKGLLNA--IVIKETKDW 388
Query: 377 ETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
+ + K + N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 389 D--AWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 438
>2eh6_A Acoat, acetylornithine aminotransferase; ARGD, structural genomics,
NPPSFA, national project on prote structural and
functional analyses; HET: PLP; 1.90A {Aquifex aeolicus}
Length = 375
Score = 233 bits (597), Expect = 2e-73
Identities = 111/400 (27%), Positives = 188/400 (47%), Gaps = 48/400 (12%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL-THKPVIKLSEKL 86
L D GK YLD +S VN GH+ + +ALK Q+ KL HV SNL + +L+ KL
Sbjct: 22 LYDEEGKEYLDFVSGIGVNSLGHAYPKLTEALKEQVEKLLHV--SNLYENPWQEELAHKL 79
Query: 87 SSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAV 146
+ G F+ + G +VE A+K++ YW +KG NK KFI +NS+HG T G+L+
Sbjct: 80 VKHF-WTEGKVFFANSGTESVEAAIKLARKYWRDKG-KNKWKFISFENSFHGRTYGSLSA 137
Query: 147 TNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
T F + + L+ + + D++ + K + A II
Sbjct: 138 TGQPKFHKGFEPLVP--------------------GFSYAKLNDIDSVYKLLDEETAGII 177
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
IE +Q GG+ +L ++EIC ++ LI DE+ G GRTG+F+A +H + PD
Sbjct: 178 IEV-IQGEGGVNEASEDFLSKLQEICKEKDVLLIIDEVQTGIGRTGEFYAYQHFNLKPDV 236
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
+ L+KG+ GG +P+ ++ +++ S + H ++ GNPLAC A ++
Sbjct: 237 IALAKGLGGG-VPIGAILAREEVAQSFTPGS------HGSTFGGNPLACRAGTVVVDEV- 288
Query: 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 386
+ +L + + + L L + + +G++ ++ E K + +
Sbjct: 289 -EKLLPHVREVGNYFKEKLKELGK--GKV--KGRGLMLGLELERE--------CKDYVLK 335
Query: 387 ALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTF 425
AL+ LL+ + +PP I+ K I S + +
Sbjct: 336 ALEKGLLINCTAGKVLRFLPPLIIQKEHIDRAISVLREIL 375
>1ohv_A 4-aminobutyrate aminotransferase; PLP-dependent enzyme, 4- AMIN
acid, antiepileptic drug target; HET: PLP; 2.3A {Sus
scrofa} SCOP: c.67.1.4 PDB: 1ohw_A* 1ohy_A*
Length = 472
Score = 226 bits (579), Expect = 2e-69
Identities = 88/443 (19%), Positives = 158/443 (35%), Gaps = 59/443 (13%)
Query: 21 KNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKP-- 78
+ ++ L+DV G R LD S G+S+ + K ++ N + L P
Sbjct: 53 RGNY---LVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPALGILPPE 109
Query: 79 --VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN----------- 125
V KL E L S+ + + G+ + E A K F ++ +K
Sbjct: 110 NFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSKEELETC 169
Query: 126 ---------KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR---N 173
+ ++HG T+G LA T+ ++ +I + I P +
Sbjct: 170 MINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFD-WPIAPFPRLKYPLE 228
Query: 174 INKGNSANEIARC--AIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREI 231
+ E ARC + DL + +K +A II+EP +Q GG + + +R+I
Sbjct: 229 EFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFRKLRDI 287
Query: 232 CNNYNIHLIADEIAVGCGRTGKFFACEHA--EIWPDFLCLSKGITGGYLPLS-LVMTTDK 288
+ + DE+ G G TGKF+A EH + D + SK + G +
Sbjct: 288 SRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTG-GFFHKEEFRPNA 346
Query: 289 IYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSL 348
Y +++ G+P + I ++++L + K + L L
Sbjct: 347 PYR------------IFNTWLGDPSKNLLLAEVINIIKREDLLSNAAHAGKVLLTGLLDL 394
Query: 349 I-THPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTVYLMP 405
+P+ I R +G +FD D K A ++L G ++ P
Sbjct: 395 QARYPQFISRVRGRGTFCSFD--TPDES----IRNKLISIARNKGVMLGGCGDKSIRFRP 448
Query: 406 PYILNKNEIQHMTSAIFQTFNEV 428
+ + + +
Sbjct: 449 TLVFRDHHAHLFLNIFSDILADF 471
>2yky_A Beta-transaminase; transferase; HET: PLP SFE; 1.69A {Mesorhizobium
SP} PDB: 2ykv_A* 2yku_A* 2ykx_A*
Length = 465
Score = 86.5 bits (215), Expect = 1e-18
Identities = 47/235 (20%), Positives = 75/235 (31%), Gaps = 46/235 (19%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGR 250
LLK++ + AAI++EP + AGG + + +L L+R + LI DE V R
Sbjct: 223 TADLLKRHGHDCAAILVEP-MLGAGGCVPAERAFLDLLRAEASRCGALLIFDE--VMTSR 279
Query: 251 TGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI----YNSIYYKNNIN 300
A E I D L K I GG + +M ++ +
Sbjct: 280 LSGGGAQEMLGISADLTTLGKYIGGG-MSFGAFGGRRDLM--ERFDPARDGAFA------ 330
Query: 301 IFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIINF 357
H+ +++ N L A A L +S + L + P
Sbjct: 331 ---HAGTFNNNILTMSAGHAALTQIYTRQAASDLSASGDRFRANLNRIAVENQAPLQFT- 386
Query: 358 RQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 405
+ I + + FF L+ G +YL P
Sbjct: 387 GLGSLGTIHFSRAPIRSAGDVRAADQQLK-ELFFFHMLRK-------G--IYLAP 431
Score = 41.0 bits (97), Expect = 6e-04
Identities = 12/38 (31%), Positives = 19/38 (50%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 65
DV G Y++ + + LFGHS+ I A++ L
Sbjct: 94 FQDVDGHAYVNFLGEYTAGLFGHSHPVIRAAVERALAV 131
>2cy8_A D-phgat, D-phenylglycine aminotransferase; structural genomics,
NPPSFA, national PROJ protein structural and functional
analyses; 2.30A {Pseudomonas stutzeri}
Length = 453
Score = 81.5 bits (202), Expect = 7e-17
Identities = 44/246 (17%), Positives = 80/246 (32%), Gaps = 61/246 (24%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
+ + + + IAA I EP G+ +L+ E+ Y I DE V
Sbjct: 191 MREVFANHGSDIAAFIAEP---VGSHFGVTPVSDSFLREGAELARQYGALFILDE--VIS 245
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSL------VMT------TDKIYNSIYY 295
G R G ++ PD CL+K GG LP + VM K+
Sbjct: 246 GFRVGNHGMQALLDVQPDLTCLAKASAGG-LPGGILGGREDVMGVLSRGSDRKVL----- 299
Query: 296 KNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HP 352
H +++GNP+ AA+A ++ +D++ +I+ + +A+ L
Sbjct: 300 --------HQGTFTGNPITAAAAIAAIDTILEDDVCAKINDLGQFAREAMNHLFARKGLN 351
Query: 353 KIINFRQKGMIWAF--------DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGN 399
+ + D + ++ +A + G
Sbjct: 352 WLAY-GRFSGFHLMPGLPPNTTDTGSITRAEVARPDVKMI-AAMRMALILE-------G- 401
Query: 400 TVYLMP 405
V +
Sbjct: 402 -VDIGG 406
Score = 40.7 bits (96), Expect = 6e-04
Identities = 14/51 (27%), Positives = 20/51 (39%), Gaps = 3/51 (5%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 65
L I + K DV G YLD + GH + +N A+ L+
Sbjct: 41 LFISDAQGVHKT---DVDGNVYLDFFGGHGALVLGHGHPRVNAAIAEALSH 88
>3l44_A Glutamate-1-semialdehyde 2,1-aminomutase 1; alpha beta class,
PLP-dependent transferase-like, bacillus A csgid,
porphyrin biosynthesis; HET: LLP; 2.05A {Bacillus
anthracis}
Length = 434
Score = 81.0 bits (201), Expect = 9e-17
Identities = 54/238 (22%), Positives = 91/238 (38%), Gaps = 53/238 (22%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
L+ L K +++AAI++EP G G++ +L+ V E+ + +I DE V
Sbjct: 192 LKEALDKWGHEVAAILVEP---IVGNFGIVEPKPGFLEKVNELVHEAGALVIYDE--VIT 246
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL----------SLVMTTDKIYNSIYYKN 297
R A + + PD L K I GG LP+ V Y
Sbjct: 247 AFRFMYGGAQDLLGVTPDLTALGKVIGGG-LPIGAYGGKKEIMEQVAPLGPAY------- 298
Query: 298 NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKI 354
+ + +GNP + + +A LE+ ++ + +++ + + K +
Sbjct: 299 ------QAGTMAGNPASMASGIACLEVLQQEGLYEKLDELGATLEKGILEQAAKHNIDIT 352
Query: 355 INFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 405
+N R KG + + IED + E F KFF L+ G V L P
Sbjct: 353 LN-RLKGALTVYFTTNTIEDYDAAQDTDGEMF-GKFFKLMLQE-------G--VNLAP 399
Score = 39.0 bits (92), Expect = 0.002
Identities = 11/51 (21%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 65
+ + K ++ DV G +Y+D ++++ + GH++ +I KA+
Sbjct: 39 IAMERGKGAY---FWDVDGNKYIDYLAAYGPIITGHAHPHITKAITTAAEN 86
>4e77_A Glutamate-1-semialdehyde 2,1-aminomutase; structural genomics,
center for structural genomics of infec diseases, csgid,
porphyrin biosynthesis; 2.00A {Yersinia pestis}
Length = 429
Score = 80.6 bits (200), Expect = 1e-16
Identities = 54/239 (22%), Positives = 92/239 (38%), Gaps = 54/239 (22%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
+ ++ ++A II+EP AG I +L +R +C+ + LI DE V
Sbjct: 190 VRQAFEQYPQEVACIIVEP---VAGNMNCIPPLPEFLPGLRALCDEFGALLIIDE--VMT 244
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 299
G R A ++ + PD CL K I GG +P+ VM + + +Y
Sbjct: 245 GFRVALAGAQDYYHVIPDLTCLGKIIGGG-MPVGAFGGRREVM--NALAPTGPVY----- 296
Query: 300 NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIIN 356
+ + SGNP+A A A L ++ + + +++ + L P ++N
Sbjct: 297 ----QAGTLSGNPIAMAAGFACLTEISQVGVYETLTELTDSLATGLRHAAKEENIPLVVN 352
Query: 357 FRQKGMIWAFDVIIEDPEQIETFS----------KKFFVAALKNELLLRPIGNTVYLMP 405
GM F + + + + K+FF L+ G VYL P
Sbjct: 353 -HVGGMFGLF---FTNADTVTCYQDVMNCDVERFKRFFHLMLEE-------G--VYLAP 398
Score = 39.0 bits (92), Expect = 0.002
Identities = 14/51 (27%), Positives = 26/51 (50%), Gaps = 3/51 (5%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 65
L I ++ + DV GK Y+D + SW + GH++ I +A+ + +
Sbjct: 37 LFIERADGAYLF---DVDGKAYIDYVGSWGPMILGHNHPAIRQAVIEAVER 84
>3fq8_A Glutamate-1-semialdehyde 2,1-aminomutase; drug resistance,
microev0lution, integrated approach, chlorophyll
biosynthesis; HET: PMP; 2.00A {Synechococcus elongatus
pcc 6301} PDB: 2hp1_A* 2hoz_A* 2hoy_A* 2hp2_A* 3fq7_A*
2gsa_A* 3gsb_A* 4gsa_A* 3fqa_A* 2cfb_A*
Length = 427
Score = 79.8 bits (198), Expect = 2e-16
Identities = 58/236 (24%), Positives = 98/236 (41%), Gaps = 49/236 (20%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
++ L +N +IA +I+EP G G I+ D+ +L+ +REI ++ L+ DE V
Sbjct: 189 VKALFAENPGEIAGVILEP---IVGNSGFIVPDAGFLEGLREITLEHDALLVFDE--VIT 243
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 299
G R E + PD L K I GG LP+ +M + +Y
Sbjct: 244 GFRIAYGGVQEKFGVTPDLTTLGKIIGGG-LPVGAYGGKREIM--QLVAPAGPMY----- 295
Query: 300 NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIIN 356
+ + SGNPLA A + TLE+ + + + Q K+++ L ++ H
Sbjct: 296 ----QAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGG 351
Query: 357 FRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 405
+ GM F + + + E ++ F +F L+ G +YL P
Sbjct: 352 -QVSGMFGFFFTEGPVHNYEDAKKSDLQKF-SRFHRGMLEQ-------G--IYLAP 396
Score = 39.0 bits (92), Expect = 0.002
Identities = 16/51 (31%), Positives = 30/51 (58%), Gaps = 3/51 (5%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 65
+V +K+++ W DV G RY+D + +W + GH++ + +ALK + K
Sbjct: 36 IVFDRVKDAYAW---DVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEK 83
>2epj_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.70A {Aeropyrum
pernix} PDB: 2zsl_A* 2zsm_A*
Length = 434
Score = 78.3 bits (194), Expect = 6e-16
Identities = 50/238 (21%), Positives = 93/238 (39%), Gaps = 53/238 (22%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
LE + + ++IA +I+EP G+I +L ++ + LI DE V
Sbjct: 193 LERVFAEYGDRIAGVIVEP---VIANAGVIPPRREFLAALQRLSRESGALLILDE--VVT 247
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL----------SLVMTTDKIYNSIYYKN 297
G R G A + I D + L K I GG P+ SL+ K++
Sbjct: 248 GFRLGLEGAQGYFNIEGDIIVLGKIIGGG-FPVGAVAGSREVMSLLTPQGKVF------- 299
Query: 298 NINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKI 354
++ +++ +P+ A LATL+ ++ + + K + +A + ++ P
Sbjct: 300 ------NAGTFNAHPITMAAGLATLKALEEEPVYSVSREAAKALEEAASEVLDRTGLPYT 353
Query: 355 INFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 405
IN R + M+ F + + Q + + K L+ G V++ P
Sbjct: 354 IN-RVESMMQLFIGVEEVSNAAQARKADKKFY-VKLHEEMLRR-------G--VFIAP 400
Score = 39.8 bits (94), Expect = 0.002
Identities = 9/51 (17%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 65
++ + ++ L V G R +D + ++ + GH + + +A++ L +
Sbjct: 40 FYVKRGEGAY---LYTVDGARIVDLVLAYGPLILGHKHPRVLEAVEEALAR 87
>3k28_A Glutamate-1-semialdehyde 2,1-aminomutase 2; biosynthesis of
cofactors, prosthetic groups, and carriers, csgid,
cytoplasm, isomerase; HET: MSE PLP; 1.95A {Bacillus
anthracis str} PDB: 3bs8_A*
Length = 429
Score = 74.4 bits (184), Expect = 1e-14
Identities = 54/236 (22%), Positives = 89/236 (37%), Gaps = 50/236 (21%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
++ ++ + IA +I+EP AG G++ +L+ +RE+ LI DE V
Sbjct: 190 VKYAFEQFGDDIACVIVEP---VAGNMGVVPPQPGFLEGLREVTEQNGALLIFDE--VMT 244
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 299
G R + + PD CL K I GG LP+ + +M ++ IY
Sbjct: 245 GFRVAYNCGQGYYGVTPDLTCLGKVIGGG-LPVGAYGGKAEIM--RQVAPSGPIY----- 296
Query: 300 NIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLIT---HPKIIN 356
+ + SGNPLA A TL + + + L P IN
Sbjct: 297 ----QAGTLSGNPLAMAAGYETLVQL-TPESYVEFERKAEMLEAGLRKAAEKHGIPHHIN 351
Query: 357 FRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 405
R MI F D + + + ++ F ++ ++ G V+L P
Sbjct: 352 -RAGSMIGIFFTDEPVINYDAAKSSNLQFF-AAYYREMVEQ-------G--VFLPP 396
Score = 39.0 bits (92), Expect = 0.002
Identities = 15/51 (29%), Positives = 25/51 (49%), Gaps = 3/51 (5%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 65
L + K S + D+ G Y+D + SW + GH+N + +ALK +
Sbjct: 37 LFMERGKGSK---VYDIDGNEYIDYVLSWGPLIHGHANDRVVEALKAVAER 84
>2e7u_A Glutamate-1-semialdehyde 2,1-aminomutase; PLP enzyme, GSA,
structural genomics, NPPSFA; HET: PMP; 1.90A {Thermus
thermophilus}
Length = 424
Score = 67.9 bits (167), Expect = 2e-12
Identities = 65/237 (27%), Positives = 97/237 (40%), Gaps = 51/237 (21%)
Query: 191 LEILLKKNHNKIAAIIIEPLVQCAG--GMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
L +LK+ +IAAII EP G G+++ +LK + E Y + LIADE V
Sbjct: 189 LREVLKRRGEEIAAIIFEP---VVGNAGVLVPTEDFLKALHE-AKAYGVLLIADE--VMT 242
Query: 249 G-RTGKFFACEHAEIWPDFLCLSKGITGGYLPL------SLVMTTDKI--YNSIYYKNNI 299
G R A E + PD + L K + GG LP +M +K+ +Y
Sbjct: 243 GFRLAFGGATELLGLKPDLVTLGKILGGG-LPAAAYAGRREIM--EKVAPLGPVY----- 294
Query: 300 NIFLHSHSYSGNPLACCAALATLEIFNKD-NILQRISQDMKKITKALTSLIT---HPKII 355
+ + SGNPLA A LATLE+ ++ + ++ L ++ P +
Sbjct: 295 ----QAGTLSGNPLAMAAGLATLELLEENPGYYAYLEDLGARLEAGLKEVLKEKGLPHTV 350
Query: 356 NFRQKGMIWAF--DVIIEDPEQ-----IETFSKKFFVAALKNELLLRPIGNTVYLMP 405
N R MI F + + + E F K+FF L G +Y P
Sbjct: 351 N-RVGSMITVFFTEGPVVTFQDARRTDTELF-KRFFHGLLDR-------G--IYWPP 396
Score = 38.6 bits (91), Expect = 0.003
Identities = 11/51 (21%), Positives = 24/51 (47%), Gaps = 3/51 (5%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 65
+ + ++ + D G RYLD + SW + GH++ + ++ L +
Sbjct: 36 PFLVRGEGAY---VWDADGNRYLDYVMSWGPLILGHAHPKVLARVRETLER 83
>1ax4_A Tryptophanase; tryptophan biosynthesis, tryptophan indole-lyase,
pyridoxal 5'-phosphate, monovalent cation binding site;
HET: LLP; 2.10A {Proteus vulgaris} SCOP: c.67.1.2
Length = 467
Score = 54.0 bits (129), Expect = 4e-08
Identities = 47/280 (16%), Positives = 80/280 (28%), Gaps = 46/280 (16%)
Query: 79 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNS--- 135
L +K L Y + G A + + Y + K + + N
Sbjct: 78 YYDLKDKAKELFNYD--YIIPAHQGRGAENILFPV--LLKYKQKEGKAKNPVFISNFHFD 133
Query: 136 ---YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192
H E G A+ + ++ + KG+ I L+
Sbjct: 134 TTAAHVELNGCKAINIVTE-------------KAFDSETYDDWKGDFD-------IKKLK 173
Query: 193 ILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG---- 247
+ ++ + I AI+ AGG LK V EI + I ++ D
Sbjct: 174 ENIAQHGADNIVAIVSTVTCNSAGGQP-VSMSNLKEVYEIAKQHGIFVVMDSARFCENAY 232
Query: 248 --CGRTGKFFACEHAEIWPDFLCLSKGIT-----GGYLPL-SLVMTTDKIYNSIYYKNNI 299
R K+ E+ D + +T L + LV D +
Sbjct: 233 FIKARDPKYKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRC 292
Query: 300 NIFLHSHSYSGNPLACCAALA--TLEIFNKDNILQRISQD 337
+Y G AA+ E ++ + RI Q
Sbjct: 293 VPMEGFVTYGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQV 332
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 47.5 bits (112), Expect = 6e-06
Identities = 60/395 (15%), Positives = 109/395 (27%), Gaps = 135/395 (34%)
Query: 76 HKPVIKLSEKLSSLTQYKLGHCFYGSDGAS----AVEVAL------KMSFH-YWYNKGFL 124
+P +KL + L L K G G+ A++V L KM F +W N
Sbjct: 134 LQPYLKLRQALLELRPAK-NVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNC 192
Query: 125 NKKKFIC--LQNSYH-----GETLGALAVTNIQSFKEIYTSL----LNKTY--------- 164
N + + LQ + + + I L +K Y
Sbjct: 193 NSPETVLEMLQKLLYQIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLN 252
Query: 165 ----------------IITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIE 208
++TT + + ++A L + ++
Sbjct: 253 VQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLD 312
Query: 209 PLVQCAGGMIMYDSIYLKLVREIC--NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
Q L RE+ N + +IA+ I + W D
Sbjct: 313 CRPQ-------------DLPREVLTTNPRRLSIIAESIR------------DGLATW-DN 346
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
+ ++ T I +S+ N + + + L +F
Sbjct: 347 ----------WKHVNCDKLTTIIESSL---NVLEPAEYRKMFD-----------RLSVFP 382
Query: 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 386
I L S +IW FDVI D + V
Sbjct: 383 PS----------AHIPTILLS--------------LIW-FDVIKSDVMVV--------VN 409
Query: 387 ALKNELLL--RPIGNTVYLMPPYILNKNEIQHMTS 419
L L+ +P +T+ + Y+ K ++++ +
Sbjct: 410 KLHKYSLVEKQPKESTISIPSIYLELKVKLENEYA 444
Score = 41.0 bits (95), Expect = 8e-04
Identities = 26/116 (22%), Positives = 44/116 (37%), Gaps = 19/116 (16%)
Query: 323 EIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMI-----W-AFDVIIEDPEQI 376
++F K N+ R+ Q K+ +AL L ++ G++ W A DV +
Sbjct: 124 QVFAKYNV-SRL-QPYLKLRQALLELRPAKNVLID---GVLGSGKTWVALDV-CLSYKVQ 177
Query: 377 ETFSKKFFVAALKN----ELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
K F LKN E +L + +Y + P N +S I + +
Sbjct: 178 CKMDFKIFWLNLKNCNSPETVLEMLQKLLYQIDP---NWTSRSDHSSNIKLRIHSI 230
Score = 41.0 bits (95), Expect = 8e-04
Identities = 62/421 (14%), Positives = 128/421 (30%), Gaps = 118/421 (28%)
Query: 6 YFKKKSSNN--LVIRSLKNSWKWSLIDVSGK-----RYLDAISSWWVNLFGHSNSYINKA 58
K K N LV+ +++N+ W+ ++S K R+ V F + + + +
Sbjct: 237 LLKSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQ------VTDFLSAATTTHIS 290
Query: 59 LKNQLNKLEHV----MLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114
L + L +L L ++ + +L S ++
Sbjct: 291 LDHHSMTLTPDEVKSLLLKYLDCRPQDLPREVLTTNPRRLSII-----AES-----IRDG 340
Query: 115 FHYW--YNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSR 172
W + +K I +++S L +++++ L + P S
Sbjct: 341 LATWDNWKHVNCDKLTTI-IESSL--NVL------EPAEYRKMFDRL----SVF--PPSA 385
Query: 173 NINKGNSANEIARCAIF-------DLEILLKKNHNKIAAIIIEPLVQC--AGGMIMYDSI 223
+I ++ D+ +++ K H LV+ I SI
Sbjct: 386 HI-------PTILLSLIWFDVIKSDVMVVVNKLHKY-------SLVEKQPKESTISIPSI 431
Query: 224 YLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLV 283
YL+L ++ N Y +H V K F + L Y
Sbjct: 432 YLELKVKLENEYALH----RSIVDHYNIPKTFDSDD---------LIPPYLDQY------ 472
Query: 284 MTTDKIYNSI-YYKNNIN----------IFL----------HSHSYSGNPLACCAALATL 322
Y+ I ++ NI +FL H + + L L
Sbjct: 473 -----FYSHIGHHLKNIEHPERMTLFRMVFLDFRFLEQKIRHDSTAWNASGSILNTLQQL 527
Query: 323 E-----IFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPE-QI 376
+ I + D +R+ + + + K + + ++ + I E+ Q+
Sbjct: 528 KFYKPYICDNDPKYERLVNAILDFLPKIEENLICSKYTDLLRIALMAEDEAIFEEAHKQV 587
Query: 377 E 377
+
Sbjct: 588 Q 588
Score = 34.1 bits (77), Expect = 0.098
Identities = 47/320 (14%), Positives = 97/320 (30%), Gaps = 87/320 (27%)
Query: 152 FKEIYTSLLNKTYIITTPDSRNI-NKGNSANEIARCAIFDL-------------EILLKK 197
K++ + I++ + +I ++ + R +F E +L+
Sbjct: 35 CKDVQDMPKS---ILSKEEIDHIIMSKDAVSGTLR--LFWTLLSKQEEMVQKFVEEVLRI 89
Query: 198 NHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVR--EICNNYNI-----------HLI---- 240
N+ + + I Q + MY +L ++ YN+ L+
Sbjct: 90 NYKFLMSPIKTEQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQALLELRP 149
Query: 241 ADEIAV----GCGRTGKFFACEHAEIWPDFLCLSKGIT----GG--YLPLSLVMTTD--- 287
A + + G G+T ++ CLS + +L L + +
Sbjct: 150 AKNVLIDGVLGSGKT-----WVALDV-----CLSYKVQCKMDFKIFWLNLKNCNSPETVL 199
Query: 288 KIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDM--KKITKAL 345
++ + Y+ + N S S L +I + + + K L
Sbjct: 200 EMLQKLLYQIDPNWTSRSDHSSNIKL------------RIHSIQAELRRLLKSKPYENCL 247
Query: 346 TSL--ITHPKIIN-F----------RQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNEL 392
L + + K N F R K + ++ S +K L
Sbjct: 248 LVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVK-SL 306
Query: 393 LLRPIGNTVYLMPPYILNKN 412
LL+ + +P +L N
Sbjct: 307 LLKYLDCRPQDLPREVLTTN 326
>2ez2_A Beta-tyrosinase, tyrosine phenol-lyase; PLP-dependent enzyme,
pyridoxal-5'-phosphate, domain lyase; 1.85A {Citrobacter
freundii} PDB: 2ez1_A 2vlf_A* 2vlh_A* 2yct_A* 1tpl_A
2tpl_A* 2ycn_A* 2yhk_A* 2ycp_A* 1c7g_A*
Length = 456
Score = 46.7 bits (110), Expect = 9e-06
Identities = 48/303 (15%), Positives = 85/303 (28%), Gaps = 61/303 (20%)
Query: 77 KPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNS- 135
+ L + L +K H G A + ++ K N
Sbjct: 75 ENFYHLERTVQELFGFK--HIVPTHQGRGAENLLSQL----------AIKPGQYVAGNMY 122
Query: 136 -----YHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFD 190
YH E GA+ V ++ KG+ +
Sbjct: 123 FTTTRYHQEKNGAVFVDIVR-------------DEAHDAGLNIAFKGDID-------LKK 162
Query: 191 LEILLKKNH-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD--EIAVG 247
L+ L+ + IA I + V AGG ++ VRE+ + I + D
Sbjct: 163 LQKLIDEKGAENIAYICLAVTVNLAGGQP-VSMANMRAVRELTEAHGIKVFYDATRCVEN 221
Query: 248 C----GRTGKFFACEHAEIWPDF--------LCLSKGITGGYLPLSLVMTTDK-IYNSIY 294
+ F AEI + + K + D +++S
Sbjct: 222 AYFIKEQEQGFENKSIAEIVHEMFSYADGCTMSGKKDCLVNI--GGFLCMNDDEMFSSA- 278
Query: 295 YKNNINIFLHSHSYSGNPLACCAALAT--LEIFNKDNILQRISQDMKKITKALTSLITHP 352
K + ++ SY G A+A E + I R+ Q K + +
Sbjct: 279 -KELVVVYEGMPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQVRYLGDKLKAAGVPIV 337
Query: 353 KII 355
+ +
Sbjct: 338 EPV 340
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 44.7 bits (105), Expect = 6e-05
Identities = 54/359 (15%), Positives = 109/359 (30%), Gaps = 152/359 (42%)
Query: 18 RSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKL--EHVMLSNLT 75
K+++ +S++D+ ++ + + FG K ++ + + E ++ L
Sbjct: 1651 NHFKDTYGFSILDIV----INNPVNLTI-HFGGEKG---KRIRENYSAMIFETIVDGKLK 1702
Query: 76 HKPVIK-LSEKLSSLTQYKLGHCFYGSDG----------AS-AVEVALKMSFHYWYNKGF 123
+ + K ++E +S T F G A +E A F +KG
Sbjct: 1703 TEKIFKEINEHSTSYT-------FRSEKGLLSATQFTQPALTLMEKAA---FEDLKSKGL 1752
Query: 124 LNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEI 183
+ G +LG E Y +A
Sbjct: 1753 IPADATFA------GHSLG-----------E---------Y--------------AA--- 1769
Query: 184 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYL-----KLVREIC------ 232
L A M + + + ++
Sbjct: 1770 --------------------------LASLADVMSIESLVEVVFYRGMTMQVAVPRDELG 1803
Query: 233 -NNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYN 291
+NY + IA+ GR F+ E + ++ G G+L + +V
Sbjct: 1804 RSNYGM------IAINPGRVAASFSQEALQ----YVVERVGKRTGWL-VEIV-------- 1844
Query: 292 SIYYKNNINIFLHSHS-Y--SGNPLACCAALATL-EIFNKDNILQRISQDMKKITKALT 346
N N+ + Y +G+ AL T+ + N + Q+I D+ ++ K+L+
Sbjct: 1845 ------NYNV---ENQQYVAAGDL----RALDTVTNVLNFIKL-QKI--DIIELQKSLS 1887
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 41.1 bits (95), Expect = 1e-04
Identities = 14/55 (25%), Positives = 19/55 (34%), Gaps = 28/55 (50%)
Query: 60 KNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMS 114
K L KL+ +SL KL Y D A A +A+K +
Sbjct: 19 KQALKKLQ-------------------ASL---KL----YADDSAPA--LAIKAT 45
Score = 36.5 bits (83), Expect = 0.006
Identities = 8/22 (36%), Positives = 11/22 (50%), Gaps = 5/22 (22%)
Query: 150 QSFKEIYTSLLNKTYIITTPDS 171
Q+ K++ SL K Y DS
Sbjct: 20 QALKKLQASL--KLY---ADDS 36
>2oqx_A Tryptophanase; lyase, pyridoxal phosphate, tryptophan catabolism;
HET: CME EPE; 1.90A {Escherichia coli} SCOP: c.67.1.2
PDB: 2c44_A 2v1p_A* 2v0y_A*
Length = 467
Score = 36.5 bits (84), Expect = 0.015
Identities = 45/279 (16%), Positives = 89/279 (31%), Gaps = 40/279 (14%)
Query: 79 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHG 138
L+E + ++ Y+ + G A ++ + + + L++ K + N +
Sbjct: 76 YYALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFD 133
Query: 139 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 198
T G + + +Y R KGN + LE +++
Sbjct: 134 TTQGHSQINGCT-VRNVYIKEA------FDTGVRYDFKGN-------FDLEGLERGIEEV 179
Query: 199 H-NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD-----EIAVGCGRTG 252
N + I+ AGG LK + I Y+I ++ D E A +
Sbjct: 180 GPNNVPYIVATITSNSAGGQP-VSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQRE 238
Query: 253 KFFACEH-AEIWPDF--------LCLSKGITGGYLPL-SLVMTTDKIYNSIY--YKNNIN 300
+ +I + + K +P+ L+ D + +Y +
Sbjct: 239 AEYKDWTIEQITRETYKYADMLAMSAKK---DAMVPMGGLLCMKDDSFFDVYTECRTLCV 295
Query: 301 IFLHSHSYSGNPLACCAALATL--EIFNKDNILQRISQD 337
+ +Y G LA + N D + RI+Q
Sbjct: 296 VQEGFPTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQV 334
>1o69_A Aminotransferase; structural genomics, unknown function; HET: X04;
1.84A {Campylobacter jejuni} SCOP: c.67.1.4 PDB: 1o62_A
1o61_A*
Length = 394
Score = 33.4 bits (77), Expect = 0.13
Identities = 15/53 (28%), Positives = 22/53 (41%), Gaps = 8/53 (15%)
Query: 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD 242
L++ +K+ K A+I+ G D I EIC +I LI D
Sbjct: 111 LLKLAIKECEKKPKALIL---THLYGNAAKMDEI-----VEICKENDIVLIED 155
>3pj0_A LMO0305 protein; structural genomics, joint center for structural
genomics, J protein structure initiative, PSI-biology,
lyase; HET: LLP MSE; 1.80A {Listeria monocytogenes}
Length = 359
Score = 33.5 bits (77), Expect = 0.14
Identities = 17/92 (18%), Positives = 38/92 (41%), Gaps = 12/92 (13%)
Query: 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD----- 242
+ ++ +K +++++IE + GG + L+ + E C+ I L D
Sbjct: 125 LLTID-DIKSLREPVSSVLIELPQREIGGQL-PAFEELEKISEYCHEQGISLHLDGARLW 182
Query: 243 EIAVGCGRTGKFFACEHAE-IWPDFLCLSKGI 273
EI ++ + C + ++ + KGI
Sbjct: 183 EITPFYQKSAEEI-CALFDSVY---VSFYKGI 210
>1iay_A ACC synthase 2, 1-aminocyclopropane-1-carboxylate synthase 2;
protein-cofactor-inhibitor complex, V6-dependent enzyme,
LYA; HET: PLP AVG; 2.70A {Solanum lycopersicum} SCOP:
c.67.1.4 PDB: 1iax_A*
Length = 428
Score = 31.1 bits (71), Expect = 0.63
Identities = 11/20 (55%), Positives = 13/20 (65%)
Query: 225 LKLVREICNNYNIHLIADEI 244
LK V N +NIHL+ DEI
Sbjct: 210 LKSVLSFTNQHNIHLVCDEI 229
>1c4k_A Protein (ornithine decarboxylase); lyase; HET: PLP GTP; 2.70A
{Lactobacillus SP} SCOP: c.23.1.4 c.67.1.5 d.125.1.1
PDB: 1ord_A*
Length = 730
Score = 30.8 bits (69), Expect = 0.95
Identities = 26/198 (13%), Positives = 55/198 (27%), Gaps = 29/198 (14%)
Query: 72 SNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFIC 131
L H+ +EK ++ Y ++ G+S A + G +
Sbjct: 167 DLLIHEGPAVAAEKHAARV-YNADKTYFVLGGSSN---ANNTVTSALVSNG----DLVLF 218
Query: 132 LQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL 191
+N++ ALA+ + Y+ T + G ++ I +L
Sbjct: 219 DRNNHKSVYNSALAMAGGRPV-----------YLQTNRNPYGFIGGIYDSDFDEKKIREL 267
Query: 192 EILL----KKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVG 247
+ K +I +Y+ V + + ++ D VG
Sbjct: 268 AAKVDPERAKWKRPFRLAVI---QLGTYDGTIYN---AHEVVKRIGHLCDYIEFDSAWVG 321
Query: 248 CGRTGKFFACEHAEIWPD 265
+ + D
Sbjct: 322 YEQFIPMMRNSSPLLIDD 339
>3piu_A 1-aminocyclopropane-1-carboxylate synthase; fruit ripening,
ethylene biosynthesis, lyase, pyridoxal 5'-P binding;
HET: LLP PLR; 1.35A {Malus domestica} PDB: 1m4n_A*
1m7y_A* 1ynu_A* 1b8g_A*
Length = 435
Score = 30.8 bits (70), Expect = 1.1
Identities = 9/20 (45%), Positives = 12/20 (60%)
Query: 225 LKLVREICNNYNIHLIADEI 244
L L+ + IHLI+DEI
Sbjct: 213 LYLLLSFVEDKGIHLISDEI 232
>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure,
structural genomics, PSI-2, protein structure
initiative; 1.80A {Methanococcus maripaludis S2} PDB:
3c0b_A
Length = 334
Score = 29.5 bits (66), Expect = 1.9
Identities = 15/89 (16%), Positives = 34/89 (38%), Gaps = 13/89 (14%)
Query: 162 KTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYD 221
+ Y TPD + +K +S I++ DL+ + + + IA E + ++ +
Sbjct: 211 EEYTCDTPDGKGTDKRSSLVRISKVLCSDLDQISEIDAENIAKNYYELWKE-----LILE 265
Query: 222 SIYLKLVREICNNYNIHLIADEIAVGCGR 250
++ + Y + + G G
Sbjct: 266 NV-----ENVAEKYGSKKV---VITGLGE 286
>3lws_A Aromatic amino acid beta-eliminating lyase/threonine aldolase;
structural genomics, joint center for structural
genomics, JCSG; HET: LLP MSE; 2.00A {Exiguobacterium
sibiricum}
Length = 357
Score = 29.2 bits (66), Expect = 2.9
Identities = 18/94 (19%), Positives = 34/94 (36%), Gaps = 17/94 (18%)
Query: 188 IFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNI--HLIAD--- 242
+ L+ + K IA +++E + GG+ L+ + C I HL D
Sbjct: 124 LMTLDEI--KALPDIACLLLELPQREIGGVA-PAFSELETISRYCRERGIRLHL--DGAR 178
Query: 243 --EIAVGCGRTGKFFACEHAE-IWPDFLCLSKGI 273
E+ +T + I+ + KG+
Sbjct: 179 LFEMLPYYEKTAAEI-AGLFDSIY---ISFYKGL 208
>2vyc_A Biodegradative arginine decarboxylase; pyridoxal phosphate,
PLP-dependent E lyase, acid resistance; HET: LLP; 2.4A
{Escherichia coli}
Length = 755
Score = 28.9 bits (64), Expect = 3.7
Identities = 24/205 (11%), Positives = 53/205 (25%), Gaps = 32/205 (15%)
Query: 74 LTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQ 133
L H SEK ++ + + G S + + + + +
Sbjct: 201 LDHTGAFGESEKYAARV-FGADRSWSVVVGTSG---SNRTIMQ-----ACMTDNDVVVVD 251
Query: 134 NSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDL-- 191
+ H L +T + Y++ + + I E+ +
Sbjct: 252 RNCHKSIEQGLMLTGAKPV-----------YMVPSRNRYGIIGPIYPQEMQPETLQKKIS 300
Query: 192 ---EILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGC 248
K ++ G + Y+ K +++ + L DE G
Sbjct: 301 ESPLTKDKAGQKPSYCVVTNC--TYDG--VCYN---AKEAQDLLEKTSDRLHFDEAWYGY 353
Query: 249 GRTGKFFACEHAEIWPDFLCLSKGI 273
R +A +A +
Sbjct: 354 ARFNPIYADHYAMRGEPGDHNGPTV 378
>3fdb_A Beta C-S lyase, putative PLP-dependent beta-cystathionase;
PLP-dependent transferase-like fold, structural
genomics; HET: LLP; 1.99A {Corynebacterium diphtheriae}
Length = 377
Score = 28.2 bits (64), Expect = 5.6
Identities = 5/20 (25%), Positives = 12/20 (60%)
Query: 225 LKLVREICNNYNIHLIADEI 244
L + ++ + Y+ ++ DEI
Sbjct: 172 LNELCDLAHRYDARVLVDEI 191
>2ra8_A Uncharacterized protein Q64V53_bacfr; WGR domain, LRR domain,
leucine rich repeats, BFR43, structural genomics, PSI-2;
1.95A {Bacteroides fragilis}
Length = 362
Score = 28.0 bits (61), Expect = 5.8
Identities = 10/59 (16%), Positives = 24/59 (40%), Gaps = 5/59 (8%)
Query: 63 LNKLEHVMLS--NLTHKPVIKLSEKLSSLTQYK---LGHCFYGSDGASAVEVALKMSFH 116
L +LE + +S LT + L + + + K + + + + ++ +L M
Sbjct: 278 LPQLETMDISAGVLTDEGARLLLDHVDKIKHLKFINMKYNYLSDEMKKELQKSLPMKID 336
>1d2f_A MALY protein; aminotransferase fold, large PLP-binding domain,
small C-TER domain, open alpha-beta structure.,
transferase; HET: PLP; 2.50A {Escherichia coli} SCOP:
c.67.1.3
Length = 390
Score = 27.9 bits (63), Expect = 6.8
Identities = 6/20 (30%), Positives = 15/20 (75%)
Query: 225 LKLVREICNNYNIHLIADEI 244
L+++ ++C + + +I+DEI
Sbjct: 184 LEIMADLCERHGVRVISDEI 203
>3l9w_A Glutathione-regulated potassium-efflux system Pro linker, ancillary
protein KEFF; potassium channel regulation, domains,
antiport; HET: FMN AMP GSH; 1.75A {Escherichia coli}
PDB: 3eyw_A* 3l9x_A*
Length = 413
Score = 27.8 bits (62), Expect = 6.8
Identities = 9/31 (29%), Positives = 15/31 (48%), Gaps = 3/31 (9%)
Query: 47 LFGHSN---SYINKALKNQLNKLEHVMLSNL 74
++ H S+ NK + Q LE V + +L
Sbjct: 242 IYAHPYPHHSHANKRMLEQARTLEGVEIRSL 272
>3dzz_A Putative pyridoxal 5'-phosphate-dependent C-S LYA; putative
PLP-dependent aminotransferase; HET: MSE LLP PG4; 1.61A
{Lactobacillus delbrueckii subsp}
Length = 391
Score = 27.8 bits (63), Expect = 7.0
Identities = 8/20 (40%), Positives = 14/20 (70%)
Query: 225 LKLVREICNNYNIHLIADEI 244
+K + E+C + + LI+DEI
Sbjct: 182 VKRIAELCAKHQVLLISDEI 201
>3b1d_A Betac-S lyase; HET: PLP PLS EPE; 1.66A {Streptococcus anginosus}
PDB: 3b1c_A* 3b1e_A*
Length = 392
Score = 27.9 bits (63), Expect = 7.2
Identities = 6/20 (30%), Positives = 14/20 (70%)
Query: 225 LKLVREICNNYNIHLIADEI 244
L+ + +C +++ L++DEI
Sbjct: 186 LEQIGHLCQKHHVILVSDEI 205
>4dq6_A Putative pyridoxal phosphate-dependent transferas; structural
genomics, niaid, national institute of allergy AN
infectious diseases; HET: PLP; 1.50A {Clostridium
difficile} PDB: 4dgt_A*
Length = 391
Score = 27.9 bits (63), Expect = 7.3
Identities = 9/20 (45%), Positives = 15/20 (75%)
Query: 225 LKLVREICNNYNIHLIADEI 244
LK + +IC +N+ +I+DEI
Sbjct: 186 LKKLGDICLKHNVKIISDEI 205
>1c7n_A Cystalysin; transferase, aminotransferase, pyridoxal phosphate;
HET: PLP; 1.90A {Treponema denticola} SCOP: c.67.1.3
PDB: 1c7o_A*
Length = 399
Score = 27.9 bits (63), Expect = 7.5
Identities = 6/20 (30%), Positives = 13/20 (65%)
Query: 225 LKLVREICNNYNIHLIADEI 244
L+ +++I ++ L +DEI
Sbjct: 186 LQKIKDIVLKSDLMLWSDEI 205
>3kax_A Aminotransferase, classes I and II; PLP, C-S lyase, transf
structural genomics, center for structural genomics of
INFE diseases, csgid; HET: LLP MSE PLP; 1.70A {Bacillus
anthracis str} PDB: 3t32_A*
Length = 383
Score = 27.8 bits (63), Expect = 7.7
Identities = 8/20 (40%), Positives = 13/20 (65%)
Query: 225 LKLVREICNNYNIHLIADEI 244
L + +C YN+ ++ADEI
Sbjct: 178 LTKLGSLCTKYNVIVVADEI 197
>3l8a_A METC, putative aminotransferase, probable beta-cystathi;
beta-cystathionase, lyase; HET: PLP; 1.54A
{Streptococcus mutans}
Length = 421
Score = 27.9 bits (63), Expect = 8.1
Identities = 7/20 (35%), Positives = 13/20 (65%)
Query: 225 LKLVREICNNYNIHLIADEI 244
L + E+C + + L++DEI
Sbjct: 216 LIKIAELCKKHGVILVSDEI 235
>3b8x_A WBDK, pyridoxamine 5-phosphate-dependent dehydrase; aspartate
aminotransferase, colitose, perosamine, O-antigen,
pyridoxal phosphate,; HET: G4M; 1.70A {Escherichia coli}
PDB: 2gms_A* 2gmu_A* 2r0t_A* 3gr9_A*
Length = 390
Score = 27.6 bits (62), Expect = 8.7
Identities = 13/54 (24%), Positives = 21/54 (38%), Gaps = 8/54 (14%)
Query: 189 FDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD 242
D+E L + + AI+ V G +D I +I +I L+ D
Sbjct: 116 IDIESLKEAVTDSTKAILT---VNLLGNPNNFDEI-----NKIIGGRDIILLED 161
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.322 0.136 0.410
Gapped
Lambda K H
0.267 0.0782 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 6,593,365
Number of extensions: 400317
Number of successful extensions: 1114
Number of sequences better than 10.0: 1
Number of HSP's gapped: 946
Number of HSP's successfully gapped: 103
Length of query: 430
Length of database: 6,701,793
Length adjustment: 96
Effective length of query: 334
Effective length of database: 4,021,377
Effective search space: 1343139918
Effective search space used: 1343139918
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (26.4 bits)