RPS-BLAST 2.2.26 [Sep-21-2011]
Database: scop70_1_75
13,730 sequences; 2,407,596 total letters
Searching..................................................done
Query= psy14484
(430 letters)
>d2byla1 c.67.1.4 (A:36-439) Ornithine aminotransferase {Human (Homo
sapiens) [TaxId: 9606]}
Length = 404
Score = 243 bits (621), Expect = 3e-77
Identities = 105/416 (25%), Positives = 182/416 (43%), Gaps = 40/416 (9%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ + K + L DV G++Y D +SS GH + I ALK+Q++KL S
Sbjct: 25 VALERGKGIY---LWDVEGRKYFDFLSSISAVNQGHCHPKIVNALKSQVDKLTLT--SRA 79
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN--KKKFICL 132
+ V+ E+ + + G A E A K++ + Y + K K +
Sbjct: 80 FYNNVLGEYEEYITKLFNYHKVLPMNT-GVEAGETACKLARKWGYTVKGIQKYKAKIVFA 138
Query: 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192
++ G TL A++ + + + + + II D + LE
Sbjct: 139 AGNFWGRTLSAISSSTDPTSYDGFGPFMPGFDIIPYND-----------------LPALE 181
Query: 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252
L+ +AA ++EP +Q G+++ D YL VRE+C + + IADEI G RTG
Sbjct: 182 RALQ--DPNVAAFMVEP-IQGEAGVVVPDPGYLMGVRELCTRHQVLFIADEIQTGLARTG 238
Query: 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 312
++ A ++ + PD + L K ++GG P+S V+ D I +I H +Y GNP
Sbjct: 239 RWLAVDYENVRPDIVLLGKALSGGLYPVSAVLCDDDIMLTIKPGE------HFSTYGGNP 292
Query: 313 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIED 372
L C A+A LE+ ++N+ + + + L L + R KG++ A I
Sbjct: 293 LGCRVAIAALEVLEEENLAENADKLGIILRNELMKL-PSDVVTAVRGKGLLNA----IVI 347
Query: 373 PEQIETFSKKFFVAALKNELLLRPI-GNTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
E + + K + N LL +P G+ + PP ++ ++E++ I +T
Sbjct: 348 KETKDWDAWKVCLRLRDNGLLAKPTHGDIIRFAPPLVIKEDELRESIEIINKTILS 403
>d1sffa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Escherichia coli [TaxId: 562]}
Length = 425
Score = 241 bits (615), Expect = 4e-76
Identities = 109/426 (25%), Positives = 185/426 (43%), Gaps = 30/426 (7%)
Query: 11 SSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVM 70
+ + +N + DV G+ YLD V GH + + A++ QL KL H
Sbjct: 20 QIHPIFADRAENCR---VWDVEGREYLDFAGGIAVLNTGHLHPKVVAAVEAQLKKLSHTC 76
Query: 71 LSNLTHKPVIKLSEKLS-SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKF 129
L ++P ++L E ++ + + G+ AVE A+K++ +
Sbjct: 77 FQVLAYEPYLELCEIMNQKVPGDFAKKTLLVTTGSEAVENAVKIARAATK------RSGT 130
Query: 130 ICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIF 189
I +YHG T LA+T + L+ +E A
Sbjct: 131 IAFSGAYHGRTHYTLALTGKVNPYSAGMGLMPGHVYRALYPCPLHGI----SEDDAIASI 186
Query: 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCG 249
IAAI+IEP VQ GG +++ +R +C+ + I LIADE+ G G
Sbjct: 187 HRIFKNDAAPEDIAAIVIEP-VQGEGGFYASSPAFMQRLRALCDEHGIMLIADEVQSGAG 245
Query: 250 RTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYS 309
RTG FA E + PD +K I GG+ PL+ V ++ +++ +Y+
Sbjct: 246 RTGTLFAMEQMGVAPDLTTFAKSIAGGF-PLAGVTGRAEVMDAVAP------GGLGGTYA 298
Query: 310 GNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLI-THPKIINFRQKGMIWAFDV 368
GNP+AC AAL L++F ++N+LQ+ + +K+ L ++ HP+I + R G + A +
Sbjct: 299 GNPIACVAALEVLKVFEQENLLQKANDLGQKLKDGLLAIAEKHPEIGDVRGLGAMIAIE- 357
Query: 369 IIEDPEQIETFSK---KFFVAALKNELLLRPIG---NTVYLMPPYILNKNEIQHMTSAIF 422
+ ED + + +K + A L+L G N + ++ P + +I+ I
Sbjct: 358 LFEDGDHNKPDAKLTAEIVARARDKGLILLSCGPYYNVLRILVPLTIEDAQIRQGLEIIS 417
Query: 423 QTFNEV 428
Q F+E
Sbjct: 418 QCFDEA 423
>d1vefa1 c.67.1.4 (A:9-395) Acetylornithine/acetyl-lysine
aminotransferase ArgD {Thermus thermophilus [TaxId:
274]}
Length = 387
Score = 234 bits (597), Expect = 8e-74
Identities = 99/409 (24%), Positives = 170/409 (41%), Gaps = 45/409 (11%)
Query: 13 NNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLS 72
++L+I + + + D G Y+D + + V GH N + +A+K Q L +
Sbjct: 19 HDLLIVRGQGAR---VWDAEGNEYIDCVGGYGVANLGHGNPEVVEAVKRQAETLMAMP-Q 74
Query: 73 NLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICL 132
L + L+++ +L F + G A E ALK + + +KKF+
Sbjct: 75 TLPTPMRGEFYRTLTAILPPELNRVFPVNSGTEANEAALKFARAHTG------RKKFVAA 128
Query: 133 QNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLE 192
+ G T+G+L+VT ++E + L+ I D +E
Sbjct: 129 MRGFSGRTMGSLSVTWEPKYREPFLPLVEPVEFIPYND--------------------VE 168
Query: 193 ILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTG 252
L + + AA+I+EP VQ GG+ +L+ REI LI DEI G GRTG
Sbjct: 169 ALKRAVDEETAAVILEP-VQGEGGVRPATPEFLRAAREITQEKGALLILDEIQTGMGRTG 227
Query: 253 KFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNP 312
K FA EH I PD L L+K + GG ++ H ++ GNP
Sbjct: 228 KRFAFEHFGIVPDILTLAKALGGGVPL-------GVAVMREEVARSMPKGGHGTTFGGNP 280
Query: 313 LACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIED 372
LA A +A + + + +R ++ + L ++ PKI R G++ ++ +
Sbjct: 281 LAMAAGVAAIRYLERTRLWERAAELGPWFMEKLRAI-PSPKIREVRGMGLMVGLELKEKA 339
Query: 373 PEQIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAI 421
I K+ V L L+ + +PP ++ K +++ + A+
Sbjct: 340 APYIARLEKEHRV------LALQAGPTVIRFLPPLVIEKEDLERVVEAV 382
>d1z7da1 c.67.1.4 (A:7-410) Ornithine aminotransferase {Plasmodium
yoelii yoelii [TaxId: 73239]}
Length = 404
Score = 224 bits (571), Expect = 1e-69
Identities = 93/415 (22%), Positives = 164/415 (39%), Gaps = 37/415 (8%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+V++ K + + DV+ KRY D +S++ GH + I A+ NQ L +
Sbjct: 23 VVLKRAKGVF---VYDVNDKRYYDFLSAYSSVNQGHCHPNILNAMINQAKNLTICSRA-F 78
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
P+ L++L Y A+ L + Y K N K + +N
Sbjct: 79 FSVPLGICERYLTNLLGYDKVLMMNTGAEANETAYKLCRKWGYEVKKIPENMAKIVVCKN 138
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194
++ G TLG ++ + + + + + D + +
Sbjct: 139 NFSGRTLGCISASTTKKCTSNFGPFAPQFSKVPYDDLEALEE------------------ 180
Query: 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 254
+ + A I+EP +Q G+I+ YL+ V +IC YN+ +ADE+ G GRTGK
Sbjct: 181 -ELKDPNVCAFIVEP-IQGEAGVIVPSDNYLQGVYDICKKYNVLFVADEVQTGLGRTGKL 238
Query: 255 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 314
H + PD + L K ++GG+ P+S V+ D I I H +Y GNPLA
Sbjct: 239 LCVHHYNVKPDVILLGKALSGGHYPISAVLANDDIMLVIKP------GEHGSTYGGNPLA 292
Query: 315 CCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVIIEDP 373
+ L + + + + + + L + + + R KG++ A + E
Sbjct: 293 ASICVEALNVLINEKLCENAEKLGGPFLENLKRELKDSKIVRDVRGKGLLCAIEFKNELV 352
Query: 374 EQIETFSKKFFVAALKNELLLRPIG-NTVYLMPPYILNKNEIQHMTSAIFQTFNE 427
+ +N L+ R + T+ L PP + K ++ T I +T
Sbjct: 353 N-----VLDICLKLKENGLITRDVHDKTIRLTPPLCITKEQLDECTEIIVKTVKF 402
>d1s0aa_ c.67.1.4 (A:) Adenosylmethionine-8-amino-7-oxononanoate
aminotransferase, BioA {Escherichia coli [TaxId: 562]}
Length = 429
Score = 214 bits (545), Expect = 9e-66
Identities = 141/402 (35%), Positives = 221/402 (54%), Gaps = 15/402 (3%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLS 87
LI G+R +D +SSWW + G+++ +N A+K+Q++ + HVM +TH P I+L KL
Sbjct: 37 LILSDGRRLVDGMSSWWAAIHGYNHPQLNAAMKSQIDAMSHVMFGGITHAPAIELCRKLV 96
Query: 88 SLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVT 147
++T L F G+ AVEVA+KM+ YW K +++F+ +N YHG+T GA++V
Sbjct: 97 AMTPQPLECVFLADSGSVAVEVAMKMALQYWQAK-GEARQRFLTFRNGYHGDTFGAMSVC 155
Query: 148 NI-QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAII 206
+ S ++ L + P SR + + + + + + ++IAA+I
Sbjct: 156 DPDNSMHSLWKGYLPENLFAPAPQSRMDGEWDERDMVGFARLMA------AHRHEIAAVI 209
Query: 207 IEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDF 266
IEP+VQ AGGM MY +LK +R+IC+ I LIADEIA G GRTGK FACEHAEI PD
Sbjct: 210 IEPIVQGAGGMRMYHPEWLKRIRKICDREGILLIADEIATGFGRTGKLFACEHAEIAPDI 269
Query: 267 LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFN 326
LCL K +TGG + LS +TT ++ + F+H ++ GNPLAC AA A+L I
Sbjct: 270 LCLGKALTGGTMTLSATLTTREVAET-ISNGEAGCFMHGPTFMGNPLACAAANASLAILE 328
Query: 327 KDNILQRISQDMKKITKALTSLITHPKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVA 386
+ Q+++ ++ + L + + R G I + P + K F
Sbjct: 329 SGDWQQQVADIEVQLREQLAPARDAEMVADVRVLGAIGVVE--TTHPVNMAALQKFF--- 383
Query: 387 ALKNELLLRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFNEV 428
++ + +RP G +YLMPPYI+ ++Q +T+A+ + +
Sbjct: 384 -VEQGVWIRPFGKLIYLMPPYIILPQQLQRLTAAVNRAVQDE 424
>d2gsaa_ c.67.1.4 (A:) Glutamate-1-semialdehyde aminomutase
(aminotransferase) {Synechococcus sp., strain GR6
[TaxId: 1131]}
Length = 427
Score = 202 bits (515), Expect = 3e-61
Identities = 83/432 (19%), Positives = 156/432 (36%), Gaps = 42/432 (9%)
Query: 6 YFKKKSSNNLVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNK 65
FK +V +K+++ W DV G RY+D + +W + GH++ + +ALK + K
Sbjct: 27 AFKSVGGQPIVFDRVKDAYAW---DVDGNRYIDYVGTWGPAICGHAHPEVIEALKVAMEK 83
Query: 66 LEHVMLSNLTHKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLN 125
+ ++ + + + G A L++ Y
Sbjct: 84 GTSFGAPCALENVLAEMVNDAVP----SIEMVRFVNSGTEACMAVLRLMRAYT------G 133
Query: 126 KKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSAN--EI 183
+ K I + YHG L + + P S + K +AN
Sbjct: 134 RDKIIKFEGCYHGHADMFLVKAG------------SGVATLGLPSSPGVPKKTTANTLTT 181
Query: 184 ARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE 243
+ ++ L +N +IA +I+EP + G I+ D+ +L+ +REI ++ L+ DE
Sbjct: 182 PYNDLEAVKALFAENPGEIAGVILEP-IVGNSGFIVPDAGFLEGLREITLEHDALLVFDE 240
Query: 244 IAVGCGRTGKFFACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFL 303
+ G E + PD L K I GG + +I +
Sbjct: 241 VMTGFRIA-YGGVQEKFGVTPDLTTLGKIIGGGLPVGA-YGGKREIMQLVA---PAGPMY 295
Query: 304 HSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKALTSLITHPKIINF--RQKG 361
+ + SGNPLA A + TLE+ + + + Q K+++ L ++ + G
Sbjct: 296 QAGTLSGNPLAMTAGIKTLELLRQPGTYEYLDQITKRLSDGLLAIAQETGHAACGGQVSG 355
Query: 362 MIWAF--DVIIEDPEQIETFS----KKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQ 415
M F + + + E + +F L+ + L P + +I
Sbjct: 356 MFGFFFTEGPVHNYEDAKKSDLQKFSRFHRGMLEQGIYLAPSQF-EAGFTSLAHTEEDID 414
Query: 416 HMTSAIFQTFNE 427
+A +
Sbjct: 415 ATLAAARTVMSA 426
>d1zoda1 c.67.1.4 (A:3-433) Dialkylglycine decarboxylase
{Pseudomonas cepacia [TaxId: 292]}
Length = 431
Score = 183 bits (465), Expect = 5e-54
Identities = 93/423 (21%), Positives = 178/423 (42%), Gaps = 24/423 (5%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
++I K S+ + D G+ LD S + GH + I + KL+H + S +
Sbjct: 25 MIIERAKGSF---VYDADGRAILDFTSGQMSAVLGHCHPEIVSVIGEYAGKLDH-LFSEM 80
Query: 75 THKPVIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQN 134
+PV+ L+ +L+++T L S GA + E A++M+ K + +
Sbjct: 81 LSRPVVDLATRLANITPPGLDRALLLSTGAESNEAAIRMAKLVT------GKYEIVGFAQ 134
Query: 135 SYHGETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEIL 194
S+HG T A + T K + + + I R + N A + + +++
Sbjct: 135 SWHGMTGAAASATYSAGRKGVGPAAVGSFAIPAPFTYRPRFERNGAYDYLAELDYAFDLI 194
Query: 195 LKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKF 254
+++ +AA I EP + +GG+I Y+ ++ C + LI DE G GRTG
Sbjct: 195 DRQSSGNLAAFIAEP-ILSSGGIIELPDGYMAALKRKCEARGMLLILDEAQTGVGRTGTM 253
Query: 255 FACEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHSYSGNPLA 314
FAC+ + PD L LSK + G ++V +I + + +L ++ +PL
Sbjct: 254 FACQRDGVTPDILTLSKTLGAGLPLAAIVT-----SAAIEERAHELGYLFYTTHVSDPLP 308
Query: 315 CCAALATLEIFNKDNILQRISQDMKKITKALTSLIT-HPKIINFRQKGMIWAFDVII--E 371
L L++ +D ++ R + ++ + L L+ I + R +G++ +++
Sbjct: 309 AAVGLRVLDVVQRDGLVARANVMGDRLRRGLLDLMERFDCIGDVRGRGLLLGVEIVKDRR 368
Query: 372 DPEQIETFSKKFFVAALKNELL-----LRPIGNTVYLMPPYILNKNEIQHMTSAIFQTFN 426
E + K + L L +G + PP ++++EI S + Q
Sbjct: 369 TKEPADGLGAKITRECMNLGLSMNIVQLPGMGGVFRIAPPLTVSEDEIDLGLSLLGQAIE 428
Query: 427 EVI 429
+
Sbjct: 429 RAL 431
>d1ohwa_ c.67.1.4 (A:) 4-aminobutyrate aminotransferase,
GABA-aminotransferase {Pig (Sus scrofa) [TaxId: 9823]}
Length = 461
Score = 153 bits (386), Expect = 2e-42
Identities = 81/446 (18%), Positives = 147/446 (32%), Gaps = 55/446 (12%)
Query: 15 LVIRSLKNSWKWSLIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNL 74
+ ++ L+DV G R LD S G+S+ + K ++ N + L
Sbjct: 37 CNYEESRGNY---LVDVDGNRMLDLYSQISSIPIGYSHPALVKLVQQPQNVSTFINRPAL 93
Query: 75 THKP----VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKG-------- 122
P V KL E L S+ + + G+ + E A K F ++ +K
Sbjct: 94 GILPPENFVEKLRESLLSVAPKGMSQLITMACGSCSNENAFKTIFMWYRSKERGQSAFSK 153
Query: 123 ------------FLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNK----TYII 166
+ ++HG T+G LA T+ ++ +I + +
Sbjct: 154 EELETCMINQAPGCPDYSILSFMGAFHGRTMGCLATTHSKAIHKIDIPSFDWPIAPFPRL 213
Query: 167 TTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLK 226
P + + + DL + +K +A II+EP +Q GG + +
Sbjct: 214 KYPLEEFVKENQQEEARCLEEVEDLIVKYRKKKKTVAGIIVEP-IQSEGGDNHASDDFFR 272
Query: 227 LVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIW--PDFLCLSKGITGGYLPLSLVM 284
+R+I + + DE+ G G TGKF+A EH + D + SK + G
Sbjct: 273 KLRDISRKHGCAFLVDEVQTGGGSTGKFWAHEHWGLDDPADVMTFSKKMMTGGFFHKEEF 332
Query: 285 TTDKIYNSIYYKNNINIFLHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKA 344
+ Y + N + ++L + K +
Sbjct: 333 RPNAPYRIFNTWLGDPSKNLLLAEVINIIKRE------------DLLSNAAHAGKVLLTG 380
Query: 345 LTSLIT-HPKII-NFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIG-NTV 401
L L +P+ I R +G +FD E K A ++L G ++
Sbjct: 381 LLDLQARYPQFISRVRGRGTFCSFDTPDES------IRNKLISIARNKGVMLGGCGDKSI 434
Query: 402 YLMPPYILNKNEIQHMTSAIFQTFNE 427
P + + + +
Sbjct: 435 RFRPTLVFRDHHAHLFLNIFSDILAD 460
>d2v1pa1 c.67.1.2 (A:5-471) Tryptophan indol-lyase (tryptophanase)
{Escherichia coli [TaxId: 562]}
Length = 467
Score = 110 bits (274), Expect = 6e-27
Identities = 44/435 (10%), Positives = 107/435 (24%), Gaps = 57/435 (13%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTH--------KPV 79
+ + S L + +I+ + + M + + +
Sbjct: 17 RTTRAYREEAIIKSGMNPFLLDSEDVFIDLLTDSGTGAVTQSMQAAMMRGDEAFSGSRSY 76
Query: 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
L+E + ++ Y+ + G A ++ + + + L++ K + N +
Sbjct: 77 YALAESVKNIFGYQ--YTIPTHQGRGAEQIYIPVLIKKREQEKGLDRSKMVAFSNYFFDT 134
Query: 140 TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199
T G + + + G + + LE +++
Sbjct: 135 TQGHSQINGCT--------------VRNVYIKEAFDTGVRYDFKGNFDLEGLERGIEEVG 180
Query: 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE------IAVGCGRTGK 253
I+ + + G LK + I Y+I ++ D R +
Sbjct: 181 PNNVPYIVATITSNSAGGQPVSLANLKAMYSIAKKYDIPVVMDSARFAENAYFIKQREAE 240
Query: 254 FFACEHAEIWPDF--------LCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHS 305
+ +I + + K L + + +
Sbjct: 241 YKDWTIEQITRETYKYADMLAMSAKKDAMVPMGGLLCMKDDSFFDVYTECRTLCVVQEGF 300
Query: 306 HSYSGNPLACCAALAT-LEIFNKDNILQRISQDMKKITKALTSLI-------THPKIINF 357
+Y G LA L + L ++ + L + H ++
Sbjct: 301 PTYGGLEGGAMERLAVGLYDGMNLDWLAYRIAQVQYLVDGLEEIGVVCQQAGGHAAFVDA 360
Query: 358 RQKGMIWAFDVIIEDPEQIETF----------SKKFFVAALKNELLLRPIGNTVYL-MPP 406
+ D E + K L + L +P
Sbjct: 361 GKLLPHIPADQFPAQALACELYKVAGIRAVEIGSFLLGRDPKTGKQLPCPAELLRLTIPR 420
Query: 407 YILNKNEIQHMTSAI 421
+ + + A
Sbjct: 421 ATYTQTHMDFIIEAF 435
>d1ax4a_ c.67.1.2 (A:) Tryptophan indol-lyase (tryptophanase)
{Proteus vulgaris [TaxId: 585]}
Length = 465
Score = 98.5 bits (244), Expect = 5e-23
Identities = 56/434 (12%), Positives = 107/434 (24%), Gaps = 58/434 (13%)
Query: 28 LIDVSGKRYLDAISSWWVNLFGHSNSYI--------NKALKNQLNKLEHVMLSNLTHKPV 79
+ + + + L S YI N +Q + + +
Sbjct: 18 VPSREEREAALKEAGYNPFLLPSSAVYIDLLTDSGTNAMSDHQWAAMITGDEAYAGSRNY 77
Query: 80 IKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGE 139
L +K L Y + G A + + Y +G FI +++H +
Sbjct: 78 YDLKDKAKELFNYD--YIIPAHQGRGAENILFPVLLKYKQKEGKAKNPVFI---SNFHFD 132
Query: 140 TLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNH 199
T A N I T + I L+ + ++
Sbjct: 133 TTAAHVELNGCKAINIVTEKAFDSETYDDWK-------------GDFDIKKLKENIAQHG 179
Query: 200 NKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADE------IAVGCGRTGK 253
I+ + + G LK V EI + I ++ D R K
Sbjct: 180 ADNIVAIVSTVTCNSAGGQPVSMSNLKEVYEIAKQHGIFVVMDSARFCENAYFIKARDPK 239
Query: 254 FFACEHAEIWP------DFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIFLHSHS 307
+ E+ D L +S LV D + +
Sbjct: 240 YKNATIKEVIFDMYKYADALTMSAKKDPLLNIGGLVAIRDNEEIFTLARQRCVPMEGFVT 299
Query: 308 YSGNPLACCAAL--ATLEIFNKDNILQRISQD-------MKKITKALTSLITH------- 351
Y G AA+ E ++ + RI Q + H
Sbjct: 300 YGGLAGRDMAAMVQGLEEGTEEEYLHYRIGQVKYLGDRLREAGIPIQYPTGGHAVFVDCK 359
Query: 352 ---PKIINFRQKGMIWAFDVIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYL-MPPY 407
P+I + + +E + + L +
Sbjct: 360 KLVPQIPGDQFPAQAVINALYLESGVRAVEIGSFLLGRDPATGEQKHADMEFMRLTIARR 419
Query: 408 ILNKNEIQHMTSAI 421
+ + + ++ A+
Sbjct: 420 VYTNDHMDYIADAL 433
>d1c7ga_ c.67.1.2 (A:) Tyrosine phenol-lyase {Erwinia herbicola
[TaxId: 549]}
Length = 456
Score = 52.1 bits (124), Expect = 7e-08
Identities = 48/355 (13%), Positives = 91/355 (25%), Gaps = 53/355 (14%)
Query: 79 VIKLSEKLSSLTQYKLGHCFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHG 138
L + + L +K H G A + G +H
Sbjct: 77 FYHLEKTVKELFGFK--HIVPTHQGRGAENLL----SQLAIKPGQYVAGNMYFTTTRFHQ 130
Query: 139 ETLGALAVTNIQSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKN 198
E GA V + + P +I+ + L L+K+
Sbjct: 131 EKNGATFVDIV--------RDEAHDASLNLPFKGDID------------LNKLATLIKEK 170
Query: 199 HNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIAD-----EIAVGCGRTGK 253
+ A I + G ++ V E+ + Y I + D E A
Sbjct: 171 GAENIAYICLAVTVNLAGGQPVSMANMRAVHEMASTYGIKIFYDATRCVENAYFIKEQEA 230
Query: 254 FFA-----------CEHAEIWPDFLCLSKGITGGYLPLSLVMTTDKIYNSIYYKNNINIF 302
+ +A+ + K L M ++++++ +
Sbjct: 231 GYENVSIKDIVHEMFSYADGC--TMSGKKDCLVNIGGF-LCMNDEEMFSAAKELVVVYEG 287
Query: 303 LHSHSYSGNPLACCAALATLEIFNKDNILQRISQDMKKITKAL-TSLITHPKIINFRQKG 361
+ S+ A+ E + I R+ Q + L L I G
Sbjct: 288 MPSYGGLAGRDMEAMAIGLREAMQYEYIEHRVKQV-----RYLGDKLREAGVPIVEPTGG 342
Query: 362 MIWAFDVIIEDPE-QIETFSKKFFVAALKNELLLRPIGNTVYLMPPYILNKNEIQ 415
D P + F + A++ E +R + + E
Sbjct: 343 HAVFLDARRFCPHLTQDQFPAQSLAASIYMETGVRSMERG-IVSAGRSKETGENH 396
>d1b5pa_ c.67.1.1 (A:) Aspartate aminotransferase, AAT {Thermus
thermophilus [TaxId: 274]}
Length = 382
Score = 30.5 bits (68), Expect = 0.35
Identities = 17/102 (16%), Positives = 38/102 (37%), Gaps = 13/102 (12%)
Query: 186 CAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIA 245
+ D E + + + A+++ G + + L + ++ +L++DEI
Sbjct: 149 GFVPDPERVRRAITPRTKALVV-NSPNNPTGAVYPKEVLEALA-RLAVEHDFYLVSDEIY 206
Query: 246 VGCGRTGKFFACEHAEIWPD----FLCLSK--GITG---GYL 278
G+ F+ + P+ +K +TG GY
Sbjct: 207 EHLLYEGEHFSP--GRVAPEHTLTVNGAAKAFAMTGWRIGYA 246
>d1gdea_ c.67.1.1 (A:) Aromatic aminoacid aminotransferase, AroAT
{Archaeon Pyrococcus horikoshii [TaxId: 53953]}
Length = 388
Score = 29.8 bits (66), Expect = 0.60
Identities = 10/55 (18%), Positives = 26/55 (47%), Gaps = 2/55 (3%)
Query: 190 DLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEI 244
+++ L K +K A+II G ++ ++ + +++ +I+DE+
Sbjct: 148 NVDELKKYVTDKTRALII-NSPCNPTGAVLTKKDLEEIA-DFVVEHDLIVISDEV 200
>d2vglb_ a.118.1.10 (B:) Adaptin beta subunit N-terminal fragment
{Human (Homo sapiens) [TaxId: 9606]}
Length = 579
Score = 28.2 bits (62), Expect = 2.5
Identities = 15/139 (10%), Positives = 42/139 (30%), Gaps = 2/139 (1%)
Query: 106 AVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALAVTNIQSFKEIYTSLLNKTYI 165
++ + + ++ L ++ L A+ V + F E+ + +
Sbjct: 219 ILDCLSNYNPKDDREAQSICERVTPRLSHANSAVVLSAVKV--LMKFLELLPKDSDYYNM 276
Query: 166 ITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEPLVQCAGGMIMYDSIYL 225
+ + + S + L+ + +I I+ I L
Sbjct: 277 LLKKLAPPLVTLLSGEPEVQYVALRNINLIVQKRPEILKQEIKVFFVKYNDPIYVKLEKL 336
Query: 226 KLVREICNNYNIHLIADEI 244
++ + + NI + E+
Sbjct: 337 DIMIRLASQANIAQVLAEL 355
>d2q8za1 c.1.2.3 (A:1-323) Protozoan orotidine monophosphate
decarboxylase {Plasmodium falciparum (isolate 3D7)
(Plasmodium falciparum 3D7) [TaxId: 36329]}
Length = 323
Score = 27.7 bits (60), Expect = 2.6
Identities = 35/244 (14%), Positives = 69/244 (28%), Gaps = 10/244 (4%)
Query: 37 LDAISSWWVNLFGHSNSYINKALKNQLNKLEHVMLSNLTHKPVIKLSEKLSSLTQYKLGH 96
I ++ N ++ + I K LK + + L P + E+ S Y H
Sbjct: 26 EKDIENFMKNEKENNYNNIKKNLKEKYINNVSIKKDILLKAPDNIIREEKSEEFFYFFNH 85
Query: 97 -CFYGSDGASAVEVALKMSFHYWYNKGFLNKKKFICLQNSYHGETLGALA------VTNI 149
CFY + + + KM+F ++ G + + + + + + + N
Sbjct: 86 FCFYIINETNKYALTFKMNFAFYIPYGSVGIDVLKNVFDYLYELNIPTILDMKINDIGNT 145
Query: 150 QSFKEIYTSLLNKTYIITTPDSRNINKGNSANEIARCAIFDLEILLKKNHNKIAAIIIEP 209
+ K+ T N + +L K N
Sbjct: 146 VKNYRKFIFEYLKSDSCTVNIYMGTNMLKDICYDEEKNKYYSAFVLVKTTNPD---SAIF 202
Query: 210 LVQCAGGMIMYDSIYLKLVREICNNYNIHLIADEIAVGCGRTGKFFACEHAEIWPDFLCL 269
+ I + + + N+ + I G +P+ L
Sbjct: 203 QKNLSLDNKQAYVIMAQEALNMSSYLNLEQNNEFIGFVVGANSYDEMNYIRTYFPNCYIL 262
Query: 270 SKGI 273
S GI
Sbjct: 263 SPGI 266
>d1usya_ d.104.1.1 (A:) ATP phosphoribosyltransferase regulatory
subunit HisZ {Thermotoga maritima [TaxId: 2336]}
Length = 275
Score = 27.8 bits (61), Expect = 2.6
Identities = 11/46 (23%), Positives = 17/46 (36%), Gaps = 3/46 (6%)
Query: 353 KIINFRQKGMIWAFDVIIEDP--EQIETFSKKFFVAALKNELLLRP 396
K+ +F K F P E+ E + FF+ N +R
Sbjct: 8 KVFSFYSKATKKGFSPF-FVPALEKAEEPAGNFFLDRKGNLFSIRE 52
>d1a79a2 d.75.1.1 (A:9-82) Tetrameric tRNA splicing endonuclease,
N-terminal domain {Archaeon Methanococcus jannaschii
[TaxId: 2190]}
Length = 74
Score = 25.8 bits (57), Expect = 3.0
Identities = 10/37 (27%), Positives = 16/37 (43%), Gaps = 1/37 (2%)
Query: 368 VIIEDPEQIETFSKKFFVAALKNELLLRPIGNTVYLM 404
VI+ D I S + + N L L + +YL+
Sbjct: 11 VIVFDKNGISKLSARHYGNVEGNFLSLSLV-EALYLI 46
>d2huha1 b.7.5.1 (A:81-227) Putative DNA mismatch repair protein
BT2179 {Bacteroides thetaiotaomicron [TaxId: 818]}
Length = 147
Score = 25.9 bits (57), Expect = 6.7
Identities = 14/51 (27%), Positives = 25/51 (49%), Gaps = 9/51 (17%)
Query: 60 KNQLNKLEHVMLSNL--------THKPVIKLSEKLSSLTQYKLGHCFYGSD 102
K+ LN++E V + + KP + + ++ ++ YKL H F SD
Sbjct: 75 KDVLNEMERVAVQLIAFKDGKPAAIKPAVSVELRIDTVKFYKL-HTFSASD 124
Database: scop70_1_75
Posted date: Mar 27, 2010 6:21 PM
Number of letters in database: 2,407,596
Number of sequences in database: 13,730
Lambda K H
0.322 0.136 0.410
Gapped
Lambda K H
0.267 0.0500 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 13730
Number of Hits to DB: 1,650,168
Number of extensions: 79646
Number of successful extensions: 246
Number of sequences better than 10.0: 1
Number of HSP's gapped: 211
Number of HSP's successfully gapped: 30
Length of query: 430
Length of database: 2,407,596
Length adjustment: 88
Effective length of query: 342
Effective length of database: 1,199,356
Effective search space: 410179752
Effective search space used: 410179752
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 54 (25.1 bits)