BLASTP 2.2.26 [Sep-21-2011]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for compositional score matrix adjustment: Altschul, Stephen F.,
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.
Query= psy14485
(348 letters)
Database: pdbaa
62,578 sequences; 14,973,337 total letters
Searching..................................................done
>pdb|1R30|A Chain A, The Crystal Structure Of Biotin Synthase, An S-
Adenosylmethionine-dependent Radical Enzyme
pdb|1R30|B Chain B, The Crystal Structure Of Biotin Synthase, An S-
Adenosylmethionine-dependent Radical Enzyme
Length = 369
Score = 325 bits (832), Expect = 3e-89, Method: Compositional matrix adjust.
Identities = 154/303 (50%), Positives = 204/303 (67%)
Query: 29 WKLDEVIXXXXXXXXXXXXRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W L +V AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y
Sbjct: 30 WTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRY 89
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
T + A +++ +E V+ +A+KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLE
Sbjct: 90 KTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLE 149
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVXXX 208
C+TLG L+E+QA RL GLDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+
Sbjct: 150 ACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIK 209
Query: 209 XXXXXXXXLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
L E+ RA L+ QLANL PESVPIN LV++KGTPL + +D +FIRT
Sbjct: 210 VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRT 269
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGXXXXXXXXXXXXXXSKLLK 328
IAVARI MPTS +R+SAGR++M E TQA CF+AGANSIFYG +L +
Sbjct: 270 IAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFR 329
Query: 329 KLG 331
KLG
Sbjct: 330 KLG 332
>pdb|3IIZ|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From
T. Maritima In Complex With S-Adenosyl-L-Methionine
Length = 348
Score = 45.4 bits (106), Expect = 4e-05, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 102/260 (39%), Gaps = 8/260 (3%)
Query: 49 AQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 108
A ++ RKY +E+ + ++ + C ++C YC + + ++ E ++ A+
Sbjct: 39 ADEIRRKYV-GDEVHIRAIIEF-SNVCRKNCLYC--GLRRDNKNLKRYRMTPEEIVERAR 94
Query: 109 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 168
A GA + + E D I +++ E+KK+G+ L+LG + K+ G
Sbjct: 95 LAVQFGAKTIVLQSG--EDPYXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAG 152
Query: 169 LDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAEL 227
D Y +T+ P L+ + +ENRLN L ++ + L
Sbjct: 153 ADRYLLRHETANPVLHRKLRPDTSFENRLNXLLTLKELGYETGAGSMVGLPGQTIDDLVD 212
Query: 228 IFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGR 287
+ + + V I + TPL D ++ +A+ RI +P S I +
Sbjct: 213 DLLFLKEHDF-DMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAM 271
Query: 288 KEMGETTQAFCFLAGANSIF 307
+ + GAN I
Sbjct: 272 GTIVPGGREITLRCGANVIM 291
>pdb|3CIW|A Chain A, X-Ray Structure Of The [fefe]-Hydrogenase Maturase Hyde
From Thermotoga Maritima
pdb|3IIX|A Chain A, X-Ray Structure Of The Fefe-Hydrogenase Maturase Hyde From
T. Maritima In Complex With Methionine And
5'deoxyadenosine
Length = 348
Score = 45.4 bits (106), Expect = 5e-05, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 102/260 (39%), Gaps = 8/260 (3%)
Query: 49 AQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 108
A ++ RKY +E+ + ++ + C ++C YC + + ++ E ++ A+
Sbjct: 39 ADEIRRKYV-GDEVHIRAIIEF-SNVCRKNCLYC--GLRRDNKNLKRYRMTPEEIVERAR 94
Query: 109 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 168
A GA + + E D I +++ E+KK+G+ L+LG + K+ G
Sbjct: 95 LAVQFGAKTIVLQSG--EDPYXMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAG 152
Query: 169 LDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAEL 227
D Y +T+ P L+ + +ENRLN L ++ + L
Sbjct: 153 ADRYLLRHETANPVLHRKLRPDTSFENRLNXLLTLKELGYETGAGSMVGLPGQTIDDLVD 212
Query: 228 IFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGR 287
+ + + V I + TPL D ++ +A+ RI +P S I +
Sbjct: 213 DLLFLKEHDF-DMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAM 271
Query: 288 KEMGETTQAFCFLAGANSIF 307
+ + GAN I
Sbjct: 272 GTIVPGGREITLRCGANVIM 291
>pdb|3CIX|A Chain A, X-ray Structure Of The [fefe]-hydrogenase Maturase Hyde
From Thermotoga Maritima In Complex With Thiocyanate
Length = 348
Score = 45.1 bits (105), Expect = 6e-05, Method: Compositional matrix adjust.
Identities = 54/260 (20%), Positives = 102/260 (39%), Gaps = 8/260 (3%)
Query: 49 AQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAAQ 108
A ++ RKY +E+ + ++ + C ++C YC + + ++ E ++ A+
Sbjct: 39 ADEIRRKYV-GDEVHIRAIIEF-SNVCRKNCLYC--GLRRDNKNLKRYRMTPEEIVERAR 94
Query: 109 KAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVG 168
A GA + + E D I +++ E+KK+G+ L+LG + K+ G
Sbjct: 95 LAVQFGAKTIVLQSG--EDPYYMPDVISDIVKEIKKMGVAVTLSLGEWPREYYEKWKEAG 152
Query: 169 LDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVRNVXXXXXXXXXXXLSESRDQRAEL 227
D Y +T+ P L+ + +ENRLN L ++ + L
Sbjct: 153 ADRYLLRHETANPVLHRKLRPDTSFENRLNXLLTLKELGYETGAGSMVGLPGQTIDDLVD 212
Query: 228 IFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGR 287
+ + + V I + TPL D ++ +A+ RI +P S I +
Sbjct: 213 DLLFLKEHDF-DMVGIGPFIPHPDTPLANEKKGDFTLTLKMVALTRILLPDSNIPATTAM 271
Query: 288 KEMGETTQAFCFLAGANSIF 307
+ + GAN I
Sbjct: 272 GTIVPGGREITLRCGANVIM 291
>pdb|2E1T|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1T|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Complexed With Malonyl-coa
pdb|2E1U|A Chain A, Crystal Structure Of Dendranthema Morifolium Dmat
pdb|2E1U|B Chain B, Crystal Structure Of Dendranthema Morifolium Dmat
Length = 454
Score = 29.3 bits (64), Expect = 3.7, Method: Compositional matrix adjust.
Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 10/90 (11%)
Query: 113 DGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYY 172
D +TRFC AW + R +N E+ + + + + ML+E AY LK+ ++ +
Sbjct: 174 DASTRFCFLKAWTSIA-RSGNNDESFLANGTRPLYDRIIKYPMLDE--AY-LKRAKVESF 229
Query: 173 NHNLDT------SPKLYGDIISTRDYENRL 196
N + T S KL I TR N+L
Sbjct: 230 NEDYVTQSLAGPSDKLRATFILTRAVINQL 259
>pdb|2QON|A Chain A, Human Epha3 Kinase And Juxtamembrane Region,
Y596f:y602f:y742a Triple Mutant
Length = 373
Score = 28.1 bits (61), Expect = 7.4, Method: Compositional matrix adjust.
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 6/64 (9%)
Query: 88 YNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGL 147
++ + T +++ + I + K SD MGA R+L R++ N++C+V GL
Sbjct: 140 HDAQFTVIQLVGMLRGIASGMKYLSD------MGAVHRDLAARNILINSNLVCKVSDFGL 193
Query: 148 ETCL 151
L
Sbjct: 194 SRVL 197
Database: pdbaa
Posted date: Mar 3, 2013 10:34 PM
Number of letters in database: 14,973,337
Number of sequences in database: 62,578
Lambda K H
0.319 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,425,936
Number of Sequences: 62578
Number of extensions: 257664
Number of successful extensions: 520
Number of sequences better than 100.0: 6
Number of HSP's better than 100.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 519
Number of HSP's gapped (non-prelim): 6
length of query: 348
length of database: 14,973,337
effective HSP length: 100
effective length of query: 248
effective length of database: 8,715,537
effective search space: 2161453176
effective search space used: 2161453176
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 52 (24.6 bits)