RPS-BLAST 2.2.26 [Sep-21-2011]
Database: pdb70
27,921 sequences; 6,701,793 total letters
Searching..................................................done
Query= psy14485
(348 letters)
>1r30_A Biotin synthase; SAM radical protein, TIM barrel, FES cluster,
transferase; HET: SAM DTB; 3.40A {Escherichia coli}
SCOP: c.1.28.1
Length = 369
Score = 517 bits (1334), Expect = 0.0
Identities = 176/307 (57%), Positives = 232/307 (75%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
W L +V LF P DLLF AQ+VHR++FD +++++ LLSIKTG C EDC YCPQS+ Y
Sbjct: 30 WTLSQVTELFEKPLLDLLFEAQQVHRQHFDPRQVQVSTLLSIKTGACPEDCKYCPQSSRY 89
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
T + A +++ +E V+ +A+KAK+ G+TRFCMGAAW+ +RD+ +E M+ VK +GLE
Sbjct: 90 KTGLEAERLMEVEQVLESARKAKAAGSTRFCMGAAWKNPHERDMPYLEQMVQGVKAMGLE 149
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTLKNVRNVGIN 208
C+TLG L+E+QA RL GLDYYNHNLDTSP+ YG+II+TR Y+ RL+TL+ VR+ GI
Sbjct: 150 ACMTLGTLSESQAQRLANAGLDYYNHNLDTSPEFYGNIITTRTYQERLDTLEKVRDAGIK 209
Query: 209 ICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFIRT 268
+C GGI+GL E+ RA L+ QLANL PESVPIN LV++KGTPL + +D +FIRT
Sbjct: 210 VCSGGIVGLGETVKDRAGLLLQLANLPTPPESVPINMLVKVKGTPLADNDDVDAFDFIRT 269
Query: 269 IAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLK 328
IAVARI MPTS +R+SAGR++M E TQA CF+AGANSIFYG KLLTT N + + D +L +
Sbjct: 270 IAVARIMMPTSYVRLSAGREQMNEQTQAMCFMAGANSIFYGCKLLTTPNPEEDKDLQLFR 329
Query: 329 KLGINTR 335
KLG+N +
Sbjct: 330 KLGLNPQ 336
>3t7v_A Methylornithine synthase PYLB; TIM-barrel fold, mutase,
[4Fe-4S]-cluster, SAM, lysine, transferase; HET: SAM
MD0; 1.50A {Methanosarcina barkeri}
Length = 350
Score = 317 bits (815), Expect = e-107
Identities = 51/321 (15%), Positives = 115/321 (35%), Gaps = 26/321 (8%)
Query: 29 WKLDEVINLFNL---PFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQS 85
+++ L +L + L+ A + R ++ N + L + C C +C +
Sbjct: 23 LTDNDLRTLLSLESKEGLERLYSAARKVRDHYFGNRVFLNCFIYFS-TYCKNQCSFCYYN 81
Query: 86 THYNTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKI 145
L++E + + K G + D + ++ VK+
Sbjct: 82 CRNEINR---YRLTMEEIKETCKTLKGAGFHMVDLTMGEDPYYYEDPNRFVELVQIVKEE 138
Query: 146 -GLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVR 203
GL ++ G+++ + ++ G ++ +T +LY + + ++ R+N + +
Sbjct: 139 LGLPIMISPGLMDNATLLKAREKGANFLALYQETYDTELYRKLRVGQSFDGRVNARRFAK 198
Query: 204 NVGINICCGGIIGLSESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPL 263
G + G + G+ + + ++ P+ V + + +GTPL G L
Sbjct: 199 QQGYCVEDGILTGVGNDIESTILSLRGMSTN--DPDMVRVMTFLPQEGTPLEGFRDKSNL 256
Query: 264 EFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIFYG-------------D 310
++ I+V R+ P I S + + AGAN + D
Sbjct: 257 SELKIISVLRLMFPKRLIPASLDLEGIDG--MVLRLNAGANIVTSILPPDSQLEGVANYD 314
Query: 311 KLLTTDNTKTNDDSKLLKKLG 331
+ L + + L+ +G
Sbjct: 315 RDLEERDRDIKSVVRRLEIMG 335
>3iix_A Biotin synthetase, putative; adoMet radical, SAM radical, adoMet
cleavage, Fe4S4 cluster, HYDE, hydrogenase, maturation,
beta barrel; HET: OTY CSO 5AD CPS; 1.25A {Thermotoga
maritima} PDB: 3ciw_A* 3iiz_A* 3cix_A*
Length = 348
Score = 314 bits (807), Expect = e-106
Identities = 67/321 (20%), Positives = 132/321 (41%), Gaps = 25/321 (7%)
Query: 29 WKLDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHY 88
L E +++ + FN+ LF+ R+ + +E+ + ++ + C ++C YC
Sbjct: 18 EVLKEALSINDRGFNEALFKLADEIRRKYVGDEVHIRAIIEF-SNVCRKNCLYCGLR-RD 75
Query: 89 NTEITATKILSIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLE 148
N + + ++ E ++ A+ A GA + + D+ I +++ E+KK+G+
Sbjct: 76 NKNLKRYR-MTPEEIVERARLAVQFGAKTIVLQSGEDPYXMPDV--ISDIVKEIKKMGVA 132
Query: 149 TCLTLGMLNENQAYRLKKVGLDYYNHNLDTS-PKLYGDIISTRDYENRLNTLKNVRNVGI 207
L+LG + K+ G D Y +T+ P L+ + +ENRLN L ++ +G
Sbjct: 133 VTLSLGEWPREYYEKWKEAGADRYLLRHETANPVLHRKLRPDTSFENRLNCLLTLKELGY 192
Query: 208 NICCGGIIGLS-ESRDQRAELIFQLANLNPYPESVPINNLVQIKGTPLYGSSILDPLEFI 266
G ++GL ++ D + + L + + V I + TPL D +
Sbjct: 193 ETGAGSMVGLPGQTIDDLVDDLLFLKEHDF--DMVGIGPFIPHPDTPLANEKKGDFTLTL 250
Query: 267 RTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGANSIF--------------YGDKL 312
+ +A+ RI +P S I + + + GAN I Y K+
Sbjct: 251 KMVALTRILLPDSNIPATTAMGTIVPGGREITLRCGANVIMPNWTPSPYRQLYQLYPGKI 310
Query: 313 LTTDNTKTNDDS--KLLKKLG 331
+ K+++ LG
Sbjct: 311 CVFEKDTACIPCVMKMIELLG 331
>2pff_B Fatty acid synthase subunit beta; fatty acid synthase,
acyl-carrier-protein, beta-ketoacyl RED beta-ketoacyl
synthase, dehydratase; 4.00A {Saccharomyces cerevisiae}
Length = 2006
Score = 57.4 bits (138), Expect = 4e-09
Identities = 66/381 (17%), Positives = 110/381 (28%), Gaps = 161/381 (42%)
Query: 31 LDEVINLFNL--PF-NDLLFRA--------------QKVHRKYFDANEIELAVLLS-IKT 72
+E+ +L+ DL+ + +KV + + +L ++
Sbjct: 170 FEELRDLYQTYHVLVGDLIKFSAETLSELIRTTLDAEKVFTQGLN--------ILEWLEN 221
Query: 73 GGCTEDCGY-------CP-----QSTHYNTEITATKILSI----------------ESVI 104
T D Y CP Q HY + K+L + ++
Sbjct: 222 PSNTPDKDYLLSIPISCPLIGVIQLAHY---VVTAKLLGFTPGELRSYLKGATGHSQGLV 278
Query: 105 TAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRL 164
TA A++D +W ++ I + IG+ C +AY
Sbjct: 279 TAVAIAETD---------SWESF----FVSVRKAITVLFFIGVR-CY--------EAYP- 315
Query: 165 KKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNT----LKNVRNVGINICCGGIIGLSES 220
N P + D + EN L I L+
Sbjct: 316 ----------NTSLPPSILEDSL-----ENNEGVPSPML-------------SISNLT-- 345
Query: 221 RDQRAELIFQLANLNPY-PESVPI-----N---NLVQIKGTP--LYGSSILDPLEFIRTI 269
+ ++ + N + P + N NLV + G P LYG L+ +R
Sbjct: 346 ---QEQVQDYVNKTNSHLPAGKQVEISLVNGAKNLV-VSGPPQSLYG---LNLT--LRKA 396
Query: 270 AVARITMPTSRIRMSAGRKEMGETTQAFCFL-----------AGANSIFYGDKLLTTDNT 318
A + SRI S RK FL A+ + D L +N
Sbjct: 397 K-APSGLDQSRIPFS-ERKLKFSN----RFLPVASPFHSHLLVPASDLINKD--LVKNNV 448
Query: 319 KTNDDSKLLKKLGI---NTRN 336
N K + I +T +
Sbjct: 449 SFNA-----KDIQIPVYDTFD 464
Score = 34.6 bits (79), Expect = 0.056
Identities = 21/84 (25%), Positives = 33/84 (39%), Gaps = 28/84 (33%)
Query: 255 YGSSILD-----PLE----F-------IR--TIAVARITMPTSRIRMSAGRKEMGETTQA 296
YG SILD P+ F IR A+ T+ +++ KE+ E + +
Sbjct: 1657 YGFSILDIVINNPVNLTIHFGGEKGKRIRENYSAMIFETIVDGKLKTEKIFKEINEHSTS 1716
Query: 297 FCFLAGANSIFYGDK-LLT-TDNT 318
+ F +K LL+ T T
Sbjct: 1717 Y--------TFRSEKGLLSATQFT 1732
Score = 33.9 bits (77), Expect = 0.086
Identities = 41/264 (15%), Positives = 73/264 (27%), Gaps = 88/264 (33%)
Query: 12 SNSIKKNNAISSSQSLIWKL-----DEVINLFNLPFNDLLFRA-QKVHRKYFDANEI-EL 64
+ ++ ++ L+ K V F+ +L + Y + N+I L
Sbjct: 45 TEGFAADDEPTTPAELVGKFLGYVSSLVEPSKVGQFDQVLNLCLTEFENCYLEGNDIHAL 104
Query: 65 AV-LLSIKTGGCTEDCGYCPQSTHYNTEITATKILSIESVITAA-QKAKSDGATRFCM-- 120
A LL + + I A + + +A +A +G +
Sbjct: 105 AAKLLQENDTTLVKTKELI--KNYITARIMAKR--PFDKKSNSALFRAVGEGNAQLVAIF 160
Query: 121 ---GAA---WRELKDRDLDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNH 174
G + EL RDL Y
Sbjct: 161 GGQGNTDDYFEEL--RDL---------------------------------------Y-- 177
Query: 175 NLDTSPKLYGDIISTRDYENRLNTLKNVRNV---------GINICCGGIIGLSESRDQRA 225
T L GD+I L+ L +R G+NI + E+
Sbjct: 178 --QTYHVLVGDLIKFSA--ETLSEL--IRTTLDAEKVFTQGLNI-----LEWLENPSNTP 226
Query: 226 ELIFQLANLNPYPESVPINNLVQI 249
+ + L P S P+ ++Q+
Sbjct: 227 DKDY----LLSIPISCPLIGVIQL 246
>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis,
programmed cell death; HET: DTP; 6.90A {Drosophila
melanogaster} PDB: 3iz8_A*
Length = 1221
Score = 53.3 bits (127), Expect = 8e-08
Identities = 64/421 (15%), Positives = 118/421 (28%), Gaps = 142/421 (33%)
Query: 2 SLKIIQSSKESNSI-KKNNAISSSQSLIWKL----DEVINLF-------NLPF------- 42
K I S +E + I +A+S + L W L +E++ F N F
Sbjct: 41 MPKSILSKEEIDHIIMSKDAVSGTLRLFWTLLSKQEEMVQKFVEEVLRINYKFLMSPIKT 100
Query: 43 ---------------NDLLFRAQKVHRKYF-----DANEIELAVLLSIKT---------G 73
D L+ +V KY ++ A LL ++
Sbjct: 101 EQRQPSMMTRMYIEQRDRLYNDNQVFAKYNVSRLQPYLKLRQA-LLELRPAKNVLIDGVL 159
Query: 74 GCTEDCGYCPQSTHYNTEITATKILSIESVITAAQKAKSDGA-TRFCMGAAW----RELK 128
G G K + + A S + W
Sbjct: 160 GS----G---------------K-----TWV-ALDVCLSYKVQCKMDFKIFWLNLKNCNS 194
Query: 129 DRD-LDNIENMICEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDII 187
L+ ++ ++ ++ + + +K + + ++
Sbjct: 195 PETVLEMLQKLLYQIDPNWTS--------RSDHSSNIK--------LRIHSIQAELRRLL 238
Query: 188 STRDYENRLNTLKNVRNVGI----NICC--------GGII-GLSESRDQRAELIFQLANL 234
++ YEN L L NV+N N+ C + LS + L L
Sbjct: 239 KSKPYENCLLVLLNVQNAKAWNAFNLSCKILLTTRFKQVTDFLSAATTTHISLDHHSMTL 298
Query: 235 NPYPES---------VPINNL-VQI-KGTPLYGSSI-------LDPLEFIRTIAVARITM 276
P E +L ++ P S I L + + + ++
Sbjct: 299 TP-DEVKSLLLKYLDCRPQDLPREVLTTNPRRLSIIAESIRDGLATWDNWKHVNCDKL-- 355
Query: 277 PTSRIRMSAGRKEMGETTQAFCFLAGANSIFYGD-----KLLTT--DNTKTNDDSKLLKK 329
T+ I S E E + F L+ +F LL+ + +D ++ K
Sbjct: 356 -TTIIESSLNVLEPAEYRKMFDRLS----VFPPSAHIPTILLSLIWFDVIKSDVMVVVNK 410
Query: 330 L 330
L
Sbjct: 411 L 411
Score = 41.8 bits (97), Expect = 3e-04
Identities = 51/342 (14%), Positives = 101/342 (29%), Gaps = 104/342 (30%)
Query: 31 LDEVINLFNLPFNDLLFRAQKVHRKYFDANEIELAVLLSIKTGGCTEDCGYCPQSTHYNT 90
+D + D+L + FD +++ + SI + E+ + S
Sbjct: 7 MDFETGEHQYQYKDILSVFEDAFVDNFDCKDVQ-DMPKSILS---KEEIDHIIMSKD--- 59
Query: 91 EITATKILSIESVITAAQKAKSDGATRFCMGA----------AWR-ELKDRDLDNIENMI 139
++ T L T K + +F + E + + I
Sbjct: 60 AVSGTLRL----FWTLLSKQEE-MVQKFVEEVLRINYKFLMSPIKTEQRQPSM-MTRMYI 113
Query: 140 CEVKKIGLETCLTLGMLNENQAYRLKKVGLDYYNHNLDTSPKLYGDIISTRDYENRLNTL 199
+ + + N+NQ + V + + Y + L L
Sbjct: 114 EQRDR----------LYNDNQVFAKYNV----------SRLQPYLKL------RQALLEL 147
Query: 200 KNVRNVGINICCGGIIGLSES-------RDQRAEL-----IF--QLANLNPYPESV--PI 243
+ +NV I+ G++G ++ + + IF L N N PE+V +
Sbjct: 148 RPAKNVLID----GVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNS-PETVLEML 202
Query: 244 NNLVQIKGTPLYGSSILDPLEFIRTIAVARITMPTSRIRMSAGRKEMGETTQAFCFLAGA 303
L +DP R+ + I + I+ R L
Sbjct: 203 QKL----------LYQIDPNWTSRSDHSSNIKLRIHSIQAELRR-----------LLKSK 241
Query: 304 NSIFYGDKLLTTDNTKTNDDSKLLKKLGIN------TRNIKI 339
Y + LL N + ++K ++ TR ++
Sbjct: 242 P---YENCLLVLLNVQ---NAKAWNAFNLSCKILLTTRFKQV 277
>1qzv_F Plant photosystem I: subunit PSAF; photosynthesis,plant
photosynthetic reaction center, peripheral antenna; HET:
CL1 PQN; 4.44A {Pisum sativum} SCOP: i.5.1.1
Length = 154
Score = 34.2 bits (77), Expect = 0.024
Identities = 9/32 (28%), Positives = 16/32 (50%), Gaps = 6/32 (18%)
Query: 223 QRAELIFQL-ANLNPY-PESVPINNLVQIKGT 252
++ + +L A+L Y +S P + IK T
Sbjct: 18 EKQA-LKKLQASLKLYADDSAPA---LAIKAT 45
Score = 33.4 bits (75), Expect = 0.046
Identities = 12/28 (42%), Positives = 12/28 (42%), Gaps = 11/28 (39%)
Query: 158 ENQAYRLKKVGLDYYNHNLDTSPKLYGD 185
E QA LKK L S KLY D
Sbjct: 18 EKQA--LKK---------LQASLKLYAD 34
>3ngj_A Deoxyribose-phosphate aldolase; lyase, structural genomics,
structural genomics center for infectious disease,
ssgcid; 1.70A {Entamoeba histolytica}
Length = 239
Score = 31.4 bits (72), Expect = 0.34
Identities = 15/85 (17%), Positives = 26/85 (30%), Gaps = 16/85 (18%)
Query: 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK--------KIGLETC 150
E + A GA M +K + D++E + V K+ +E C
Sbjct: 93 PSEVKAYETKVAVEQGAEEVDMVINIGMVKAKKYDDVEKDVKAVVDASGKALTKVIIECC 152
Query: 151 LTLGMLNENQ---AYRL-KKVGLDY 171
L + + G +Y
Sbjct: 153 Y----LTNEEKVEVCKRCVAAGAEY 173
>1mzh_A Deoxyribose-phosphate aldolase; alpha-beta barrel, structural
genomics, PSI, protein structure initiative; 2.00A
{Aquifex aeolicus} SCOP: c.1.10.1
Length = 225
Score = 30.6 bits (70), Expect = 0.59
Identities = 16/85 (18%), Positives = 28/85 (32%), Gaps = 16/85 (18%)
Query: 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVKKIG--------LETC 150
+ A +A DGA + K D + + E+ + +ET
Sbjct: 68 KTSVKVKEAVEAVRDGAQELDIVWNLSAFKSEKYDFVVEELKEIFRETPSAVHKVIVETP 127
Query: 151 LTLGMLNENQ---AYRL-KKVGLDY 171
LNE + A + + G D+
Sbjct: 128 Y----LNEEEIKKAVEICIEAGADF 148
>1gqi_A Alpha-glucuronidase; (alpha-beta)8 barrel, glycoside hydrolase;
1.48A {Pseudomonas cellulosa} SCOP: c.1.8.10 d.92.2.2
PDB: 1gqj_A* 1gqk_A* 1gql_A* 1h41_A*
Length = 708
Score = 30.6 bits (69), Expect = 0.81
Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 6/45 (13%)
Query: 301 AGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNIKIKMKNNI 345
AG S++ L + D +++ LGIN I NN+
Sbjct: 168 AG-LSLWDWGSLPNYLAPRYTDYARINASLGINGTVI-----NNV 206
>3ndo_A Deoxyribose-phosphate aldolase; ssgcid, NIH, niaid, SBRI, UW,
emerald biostructures, ALS collaborative
crystallography; HET: GOL; 1.25A {Mycobacterium
smegmatis} PDB: 3ng3_A
Length = 231
Score = 29.9 bits (68), Expect = 0.97
Identities = 14/61 (22%), Positives = 21/61 (34%), Gaps = 8/61 (13%)
Query: 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK--------KIGLETC 150
T A+ A + GAT M DLD + I V+ K+ +E+
Sbjct: 78 VPGIKATEAELAVAAGATEIDMVIDVGAALAGDLDAVSADITAVRKAVRAATLKVIVESA 137
Query: 151 L 151
Sbjct: 138 A 138
>1yyc_A LEA protein, putative late embryogenesis abundant protein;
structural genomics, protein structure initiative, CESG;
NMR {Arabidopsis thaliana}
Length = 174
Score = 28.9 bits (64), Expect = 1.5
Identities = 11/79 (13%), Positives = 27/79 (34%), Gaps = 6/79 (7%)
Query: 215 IGLSESRDQRAELIFQLANLNPYPESVPINNL---VQIKGTPLYGSSILDPLEFIR---T 268
+ + +++ NPY +S+PI + ++ + +I DP + T
Sbjct: 52 VDFKGVTRDGVDYHAKVSVKNPYSQSIPICQISYILKSATRTIASGTIPDPGSLVGSGTT 111
Query: 269 IAVARITMPTSRIRMSAGR 287
+ + + S
Sbjct: 112 VLDVPVKVAYSIAVSLMKD 130
>1l8n_A Alpha-D-glucuronidase; hydrolase; HET: GCW XYP; 1.50A {Geobacillus
stearothermophilus} SCOP: c.1.8.10 d.92.2.2 PDB: 1k9d_A*
1mqq_A* 1mqp_A 1mqr_A* 1k9f_A* 1k9e_A*
Length = 679
Score = 29.4 bits (66), Expect = 1.8
Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 6/45 (13%)
Query: 301 AGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNIKIKMKNNI 345
AG SIF+ D N + D ++LL +GIN +I NN+
Sbjct: 162 AG-RSIFFVDDQFVKQNQRIKDYARLLASVGINAISI-----NNV 200
>3r12_A Deoxyribose-phosphate aldolase; TIM beta/alpha-barrel, structural
genomics, joint center for structural genomics, JCSG;
HET: MSE CIT; 1.75A {Thermotoga maritima} PDB: 1o0y_A*
3r13_A*
Length = 260
Score = 28.8 bits (65), Expect = 2.2
Identities = 13/61 (21%), Positives = 20/61 (32%), Gaps = 8/61 (13%)
Query: 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK--------KIGLETC 150
+ A A GA M LK ++ + + I V K+ +ETC
Sbjct: 109 ETRTKAHEAIFAVESGADEIDMVINVGMLKAKEWEYVYEDIRSVVESVKGKVVKVIIETC 168
Query: 151 L 151
Sbjct: 169 Y 169
>3oa3_A Aldolase; structural genomics, seattle structural genomics center
for infectious disease, ssgcid, pathogenic fungus; 1.60A
{Coccidioides immitis}
Length = 288
Score = 28.8 bits (65), Expect = 2.2
Identities = 13/61 (21%), Positives = 27/61 (44%), Gaps = 8/61 (13%)
Query: 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK--------KIGLETC 150
S + ++ A++A +GA+ M + L ++ ++ I V+ K+ LET
Sbjct: 124 STDQKVSEAKRAMQNGASELDMVMNYPWLSEKRYTDVFQDIRAVRLAAKDAILKVILETS 183
Query: 151 L 151
Sbjct: 184 Q 184
>1p1x_A Deoxyribose-phosphate aldolase; alpha-beta barrel, TIM barrel,
lyase; 0.99A {Escherichia coli} SCOP: c.1.10.1 PDB:
1jcl_A 1jcj_A* 1ktn_A 3npv_B 3npu_A 3npw_A 3nq2_A 3npx_A
3nq8_A 3q2d_A* 3nr0_A 3nqv_A
Length = 260
Score = 28.4 bits (64), Expect = 2.9
Identities = 10/63 (15%), Positives = 22/63 (34%), Gaps = 10/63 (15%)
Query: 99 SIESVITAAQKAKSDGATRFCMGAAWRELKDRDLDNIENMICEVK----------KIGLE 148
I+ + + A + GA + +R L + +++ K K+ +E
Sbjct: 83 DIDIALAETRAAIAYGADEVDVVFPYRALMAGNEQVGFDLVKACKEACAAANVLLKVIIE 142
Query: 149 TCL 151
T
Sbjct: 143 TGE 145
>1xo8_A AT1G01470; structural genomics, protein structure initiative,
center for eukaryotic structural genomics, CESG, unknown
function; NMR {Arabidopsis thaliana} SCOP: b.1.25.1
Length = 151
Score = 27.6 bits (61), Expect = 3.6
Identities = 15/74 (20%), Positives = 27/74 (36%), Gaps = 6/74 (8%)
Query: 215 IGLSESRDQRAELIFQLANLNPYPESVPINNL---VQIKGTPLYGSSILDPLEFIR---T 268
+ L + E + +++ NPY S+PI + G + I DP T
Sbjct: 29 VDLKDVNRDSVEYLAKVSVTNPYSHSIPICEISFTFHSAGREIGKGKIPDPGSLKAKDMT 88
Query: 269 IAVARITMPTSRIR 282
+ +P S +
Sbjct: 89 ALDIPVVVPYSILF 102
>2jg5_A Fructose 1-phosphate kinase; 1-phosphofructokinase, transferase;
2.3A {Staphylococcus aureus}
Length = 306
Score = 27.5 bits (62), Expect = 7.2
Identities = 8/53 (15%), Positives = 15/53 (28%), Gaps = 15/53 (28%)
Query: 288 KEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNIKIK 340
K + + A F G G ++ L I + I++
Sbjct: 47 KTLDVESTALGFAGGFP----GKFII-----------DTLNNSAIQSNFIEVD 84
>2f02_A Tagatose-6-phosphate kinase; LACC, structural genomics, PSI,
protein structure initiative YORK SGX research center
for structural genomics; HET: ATP; 1.90A {Enterococcus
faecalis} SCOP: c.72.1.1 PDB: 2awd_A*
Length = 323
Score = 27.2 bits (61), Expect = 7.6
Identities = 11/53 (20%), Positives = 15/53 (28%), Gaps = 15/53 (28%)
Query: 288 KEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNIKIK 340
++G A L G + G + LKK I IK
Sbjct: 49 HDLGGDVIATGVLGGFH----GAFIA-----------NELKKANIPQAFTSIK 86
>2abq_A Fructose 1-phosphate kinase; dimer, structural genomics, PSI,
protein structure initiative; 2.10A {Bacillus
halodurans} SCOP: c.72.1.1
Length = 306
Score = 27.1 bits (61), Expect = 8.0
Identities = 17/63 (26%), Positives = 23/63 (36%), Gaps = 25/63 (39%)
Query: 288 KEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGI---------NTR-NI 337
K +G T+A FL G G + L+K I +TR N+
Sbjct: 47 KRLGHETKALGFLGGFT----GAYVR-----------NALEKEEIGLSFIEVEGDTRINV 91
Query: 338 KIK 340
KIK
Sbjct: 92 KIK 94
>1atz_A VON willebrand factor; collagen-binding, hemostasis, dinucleotide
binding fold; 1.80A {Homo sapiens} SCOP: c.62.1.1 PDB:
4dmu_B 2adf_A 1fe8_A 1ao3_A
Length = 189
Score = 26.9 bits (60), Expect = 8.4
Identities = 13/47 (27%), Positives = 22/47 (46%), Gaps = 11/47 (23%)
Query: 94 ATKIL-------SIESVITAAQKAKSDGATRFCMG----AAWRELKD 129
A+K + S++SV AA A+S+ T F +G +L+
Sbjct: 108 ASKAVVILVTDVSVDSVDAAADAARSNRVTVFPIGIGDRYDAAQLRI 154
>3cqd_A 6-phosphofructokinase isozyme 2; phosphofructokinases, PFK-2,
glycolysis, transferase; HET: ATP; 1.98A {Escherichia
coli} PDB: 3n1c_A*
Length = 309
Score = 27.1 bits (61), Expect = 8.7
Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 25/70 (35%)
Query: 288 KEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGI---------NTR-NI 337
+G + A GA G+ L+ LL + TR N+
Sbjct: 49 AHLGGSATAIFPAGGAT----GEHLV-----------SLLADENVPVATVEAKDWTRQNL 93
Query: 338 KIKMKNNIKQ 347
+ ++ + +Q
Sbjct: 94 HVHVEASGEQ 103
>2jg1_A Tagatose-6-phosphate kinase; phosphoryl transfer, conformational
changes, transferase, lactose metabolism; HET: MSE ANP
TA6; 2.00A {Staphylococcus aureus} PDB: 2jgv_A* 2q5r_A*
Length = 330
Score = 27.2 bits (61), Expect = 9.9
Identities = 13/61 (21%), Positives = 18/61 (29%), Gaps = 17/61 (27%)
Query: 288 KEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNIKIKMK--NNI 345
++GE A F+ G G + K L I IK + N I
Sbjct: 67 AQVGEPVLASGFIGGEL----GQFIA-----------KKLDHADIKHAFYNIKGETRNCI 111
Query: 346 K 346
Sbjct: 112 A 112
>3ie7_A LIN2199 protein; phosphofructokinases, transferase, glycero ION,
PSI-II, NYSGXRC, kinase, structural genomics, structure
initiative; HET: ATP; 1.60A {Listeria innocua} PDB:
3hic_A* 3jul_A* 3q1y_A
Length = 320
Score = 26.8 bits (60), Expect = 9.9
Identities = 10/62 (16%), Positives = 15/62 (24%), Gaps = 18/62 (29%)
Query: 288 KEMGETTQAFCFLAGANSIFYGDKLLTTDNTKTNDDSKLLKKLGINTRNIKIKMK---NN 344
+ G +A N DKL +LK+ IN +
Sbjct: 50 SKFGIKNEALGIAGSDN----LDKLY-----------AILKEKHINHDFLVEAGTSTREC 94
Query: 345 IK 346
Sbjct: 95 FV 96
Database: pdb70
Posted date: Sep 4, 2012 3:40 AM
Number of letters in database: 6,701,793
Number of sequences in database: 27,921
Lambda K H
0.318 0.134 0.383
Gapped
Lambda K H
0.267 0.0745 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Sequences: 27921
Number of Hits to DB: 4,942,894
Number of extensions: 287092
Number of successful extensions: 658
Number of sequences better than 10.0: 1
Number of HSP's gapped: 643
Number of HSP's successfully gapped: 31
Length of query: 348
Length of database: 6,701,793
Length adjustment: 94
Effective length of query: 254
Effective length of database: 4,077,219
Effective search space: 1035613626
Effective search space used: 1035613626
Neighboring words threshold: 11
Window for multiple hits: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 58 (26.1 bits)